RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7246
         (178 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 42/168 (25%), Positives = 58/168 (34%), Gaps = 52/168 (30%)

Query: 21  KVNSKKPVVEEKDKQ-----SNNKKN--VS---KS-YH-NKHNRKRS------QVMLGSK 62
           K NS  P      KQ      N  KN  VS   +S Y  N   RK        Q    S+
Sbjct: 355 KTNSHLP----AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ----SR 406

Query: 63  C-HKRRRIDYSRRFIP---PTKFLLGGNIHDPLNLNSLQD--EEINR--AMNAVTPKSSP 114
                R++ +S RF+P   P  F      H  L    L    + IN+    N V+  +  
Sbjct: 407 IPFSERKLKFSNRFLPVASP--F------HSHL----LVPASDLINKDLVKNNVSFNAKD 454

Query: 115 LPTPQH--RKG----EIEVIIPPNICDPLNLAQCDDENTADYEAQFIL 156
           +  P +    G     +   I   I D +       E T  ++A  IL
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502


>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
           oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
           1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1
           d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A*
           2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A*
           1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A*
           1iqx_A* ...
          Length = 646

 Score = 27.9 bits (61), Expect = 2.1
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 93  LNSLQDEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIPP 131
                  EI+     +  +++ L  P+ R   + V+ P 
Sbjct: 10  FRLASAGEISEVQGIL--RTAGLLGPEKRIAYLGVLDPA 46


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 5.3
 Identities = 30/217 (13%), Positives = 55/217 (25%), Gaps = 80/217 (36%)

Query: 11  REKFDD----NKNSKV----------NSKKPVVEEKDKQSNNK-------KNVSKSYHNK 49
           R+ FD       ++ +          +  K  V     + +         K  + S  + 
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 50  HNRKRSQVMLGSKCHKR--------RRID-----------YSRRFIP------------- 77
           +   + ++      H+         +  D           Y    I              
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 78  --PTKFL----LGGNI-HDPLN-------LNSLQDEEINRAMNAVTPKSSPLPTPQHRKG 123
                FL    L   I HD          LN+LQ  +  +    +       P  +    
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDND---PKYERLVN 546

Query: 124 EIEVIIP---PNI-----CDPLNLAQCDDENTADYEA 152
            I   +P    N+      D L +A   ++     EA
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583


>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
           changes, replication; 1.95A {Escherichia coli} SCOP:
           c.37.1.11 PDB: 1g8y_A 1olo_A
          Length = 279

 Score = 26.6 bits (58), Expect = 5.3
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 87  IHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIPPN--ICDPLNLAQCDD 144
           +   L+    Q       +  +      +  P+   G           + D L     ++
Sbjct: 90  LGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEE 149

Query: 145 ENTADYEAQFILPLKKMKR 163
           EN +   AQ I  ++ +  
Sbjct: 150 ENASGPMAQVIGRMEAIAA 168


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,597,105
Number of extensions: 140658
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 14
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.2 bits)