RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7246
         (178 letters)



>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
          (SteCRISP) {Chinese green tree viper (Trimeresurus
          stejnegeri) [TaxId: 39682]}
          Length = 164

 Score = 25.2 bits (54), Expect = 3.7
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 33 DKQSNNKKNVSKSYHNKHNRKRSQV 57
          D +S  K  +     + HN  R  V
Sbjct: 5  DSESPRKPEIQNEIVDLHNSLRRSV 29


>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus
          filiformis [TaxId: 276]}
          Length = 86

 Score = 24.1 bits (52), Expect = 4.7
 Identities = 5/51 (9%), Positives = 14/51 (27%)

Query: 20 SKVNSKKPVVEEKDKQSNNKKNVSKSYHNKHNRKRSQVMLGSKCHKRRRID 70
           +     PV   +       +    + HN+   +   + +G      +   
Sbjct: 16 GRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGG 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 653,178
Number of extensions: 29312
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 6
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.4 bits)