Query psy7247
Match_columns 104
No_of_seqs 101 out of 152
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:48:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954|consensus 100.0 1.9E-40 4.1E-45 275.2 9.8 102 2-103 250-353 (532)
2 PF15297 CKAP2_C: Cytoskeleton 55.2 20 0.00044 30.1 4.2 56 5-61 81-141 (353)
3 PF12843 DUF3820: Protein of u 51.5 15 0.00032 24.1 2.2 40 61-102 5-44 (67)
4 PHA00098 hypothetical protein 44.0 13 0.00028 26.5 1.2 12 8-19 48-59 (112)
5 PF02186 TFIIE_beta: TFIIE bet 36.6 47 0.001 21.1 2.9 10 60-69 8-17 (65)
6 PF08248 Tryp_FSAP: Tryptophyl 34.6 20 0.00044 16.2 0.6 7 8-14 3-9 (12)
7 COG3956 Protein containing tet 34.6 2.3E+02 0.005 24.6 7.3 73 7-82 249-337 (488)
8 KOG4402|consensus 32.5 85 0.0018 23.3 4.0 43 11-64 76-118 (144)
9 PF04716 ETC_C1_NDUFA5: ETC co 32.1 1.3E+02 0.0028 18.7 4.9 37 22-58 6-42 (57)
10 PF02096 60KD_IMP: 60Kd inner 28.9 1.9E+02 0.0041 21.0 5.4 17 85-101 53-69 (198)
11 PF11116 DUF2624: Protein of u 28.9 92 0.002 21.2 3.4 30 22-51 50-80 (85)
12 COG4840 Uncharacterized protei 26.9 24 0.00052 23.3 0.3 43 62-104 12-60 (71)
13 PF13075 DUF3939: Protein of u 26.8 26 0.00057 26.0 0.5 67 5-72 50-122 (140)
14 PF07806 Nod_GRP: Nodule-speci 24.7 31 0.00067 20.3 0.4 9 5-13 18-26 (38)
15 PF12569 NARP1: NMDA receptor- 24.7 64 0.0014 28.0 2.5 54 25-78 94-150 (517)
16 PF13040 DUF3901: Protein of u 24.7 93 0.002 18.3 2.5 22 76-97 13-38 (40)
17 PF05391 Lsm_interact: Lsm int 23.9 53 0.0011 17.0 1.2 14 11-24 7-20 (21)
18 PRK14507 putative bifunctional 21.4 75 0.0016 31.9 2.5 73 2-77 1510-1591(1693)
19 PF02042 RWP-RK: RWP-RK domain 21.0 1.2E+02 0.0025 18.7 2.5 20 80-99 23-42 (52)
20 PLN02390 molybdopterin synthas 20.0 91 0.002 21.8 2.1 26 51-77 79-104 (111)
No 1
>KOG1954|consensus
Probab=100.00 E-value=1.9e-40 Score=275.19 Aligned_cols=102 Identities=47% Similarity=0.689 Sum_probs=97.3
Q ss_pred CccccccCCCCCCCChhhHHhhHHHHhHHHHHHhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHh
Q psy7247 2 FETPCTIIWDQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIGALRAEMPSTFPLELQLE 81 (104)
Q Consensus 2 ~~vYiGSFWd~Pl~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin~lvkRArlvkvHA~Ii~~Lkk~MP~~fGK~~kk~ 81 (104)
++|||||||++||..+++++||++|++|||+||+++|+++++||||++|||||+|||||||||+|+|+||++|||+++|+
T Consensus 250 ~rvYigSfw~hPl~~~a~rrLfeaee~dl~rDlq~lp~ka~~rKind~ikrAr~akvHAyiis~lkkemp~~~gk~~~kk 329 (532)
T KOG1954|consen 250 SRVYIGSFWDHPLQDPANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKKEMPSVFGKEKKKK 329 (532)
T ss_pred eeEEeeccccCcccCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh--hcHHHHHHHHhHhCCCCCCC
Q psy7247 82 LE--NNRVENNRVEKSHSSPITRM 103 (104)
Q Consensus 82 ~~--~~~~~f~~i~~~~~~~~~~~ 103 (104)
++ |+++||.+||++||||+|..
T Consensus 330 ~lidnl~~iy~~l~re~~Is~gDf 353 (532)
T KOG1954|consen 330 RLIDNLIDIYEKLQREHNISPGDF 353 (532)
T ss_pred HHHHhHHHHHHHHhHhhcCCCcCC
Confidence 75 44668999999999999864
No 2
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=55.22 E-value=20 Score=30.12 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=37.9
Q ss_pred ccccCCCCCCCChhhHHhhHHHHhHHHHHHh-----ccchhhHHhhHHHHHHHHHHHHHHHH
Q psy7247 5 PCTIIWDQPFRYDLNRKLFEDEEQDLFKDLQ-----TLPKNAIIRKLNDVIKRARLAKVHAF 61 (104)
Q Consensus 5 YiGSFWd~Pl~~~~~~~LFe~E~~dLl~dL~-----~lP~~~~~RKin~lvkRArlvkvHA~ 61 (104)
-.||||.. +...+..++|...-...|.|-. +-|..-..-.+|+||+..-.|+=||.
T Consensus 81 ~~~sFw~t-m~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aK 141 (353)
T PF15297_consen 81 PVGSFWTT-MAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAK 141 (353)
T ss_pred Cccccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 46899954 3444445567776665555543 34777778899999998877776664
No 3
>PF12843 DUF3820: Protein of unknown function (DUF3820); InterPro: IPR024530 This protein family is mostly found in bacteria and is currently functionally uncharacterised.
Probab=51.47 E-value=15 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCCCChHHHHhhhhcHHHHHHHHhHhCCCCCC
Q psy7247 61 FIIGALRAEMPSTFPLELQLELENNRVENNRVEKSHSSPITR 102 (104)
Q Consensus 61 ~Ii~~Lkk~MP~~fGK~~kk~~~~~~~~f~~i~~~~~~~~~~ 102 (104)
.++.-....|| |||-+-.-....|..|-.--+..+-|.|+
T Consensus 5 ~L~~l~~~~MP--FGKyKG~~l~dLP~~YL~W~~~kGfP~Gk 44 (67)
T PF12843_consen 5 ILIELAQTKMP--FGKYKGRPLADLPESYLVWFARKGFPKGK 44 (67)
T ss_pred HHHHHHhcCCC--CcccCCcCHhhCCHHHHHHHHHcCCCchH
Confidence 45566778899 99988777788888887777766777664
No 4
>PHA00098 hypothetical protein
Probab=44.00 E-value=13 Score=26.47 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=9.9
Q ss_pred cCCCCCCCChhh
Q psy7247 8 IIWDQPFRYDLN 19 (104)
Q Consensus 8 SFWd~Pl~~~~~ 19 (104)
+||||||+.+..
T Consensus 48 p~~~qpL~Id~~ 59 (112)
T PHA00098 48 PFNKQPLRIEPT 59 (112)
T ss_pred CcCCCceEeCHH
Confidence 899999996554
No 5
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=36.63 E-value=47 Score=21.09 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=7.2
Q ss_pred HHHHHHHHhh
Q psy7247 60 AFIIGALRAE 69 (104)
Q Consensus 60 A~Ii~~Lkk~ 69 (104)
++|++|||++
T Consensus 8 ~~~VeymK~r 17 (65)
T PF02186_consen 8 AKAVEYMKKR 17 (65)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5677777776
No 6
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=34.59 E-value=20 Score=16.20 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=5.3
Q ss_pred cCCCCCC
Q psy7247 8 IIWDQPF 14 (104)
Q Consensus 8 SFWd~Pl 14 (104)
-||+.|.
T Consensus 3 pfw~ppi 9 (12)
T PF08248_consen 3 PFWPPPI 9 (12)
T ss_pred ccCCCCc
Confidence 4899875
No 7
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=34.57 E-value=2.3e+02 Score=24.62 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=45.9
Q ss_pred ccCCCCCCCChhhHHhhHHHHhHHHHHHhccchhhHHhhHHHHHHHHHHHHHHHHH------------HHHHHhhC----
Q psy7247 7 TIIWDQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFI------------IGALRAEM---- 70 (104)
Q Consensus 7 GSFWd~Pl~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin~lvkRArlvkvHA~I------------i~~Lkk~M---- 70 (104)
|-=||+--.+.+-++..-+|-=.|+..|-.--..-...-+.|++- .|..||.| |+.+-..|
T Consensus 249 GCPWDk~QtHqtlKryliEE~yEl~EAId~edddhmvEELGDvLl---QVllHaqIGkdeGyf~I~dVI~~i~~KMIrRH 325 (488)
T COG3956 249 GCPWDKKQTHQTLKRYLIEECYELLEAIDEEDDDHMVEELGDVLL---QVLLHAQIGKDEGYFNINDVISGISEKMIRRH 325 (488)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhccchHhHHHHHHHHHH---HHHHHHhhcccCCeeeHHHHHHHHHHHHHHhC
Confidence 445776655666666665665556655555544555555666554 35568765 56666666
Q ss_pred CCCCChHHHHhh
Q psy7247 71 PSTFPLELQLEL 82 (104)
Q Consensus 71 P~~fGK~~kk~~ 82 (104)
|-+||.++.+..
T Consensus 326 PHvF~d~qve~~ 337 (488)
T COG3956 326 PHVFKDEQVEDS 337 (488)
T ss_pred cccccccccccH
Confidence 999999876554
No 8
>KOG4402|consensus
Probab=32.47 E-value=85 Score=23.30 Aligned_cols=43 Identities=21% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCCCCChhhHHhhHHHHhHHHHHHhccchhhHHhhHHHHHHHHHHHHHHHHHHH
Q psy7247 11 DQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIG 64 (104)
Q Consensus 11 d~Pl~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin~lvkRArlvkvHA~Ii~ 64 (104)
..|+.+.. |+.+..+-+.+|..||-. ||++-.|....-+|-++
T Consensus 76 ~sp~~~~~----~~~dD~v~vnel~~lp~~-------dl~~kIr~iqn~vYqLG 118 (144)
T KOG4402|consen 76 ESPYKNIS----FLKDDAVTVNELSHLPAD-------DLAKKIRNIQNSVYQLG 118 (144)
T ss_pred CCccchhh----hhhhhHHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHh
Confidence 44555544 889999999999999964 45555555555555443
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=32.07 E-value=1.3e+02 Score=18.68 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=27.2
Q ss_pred hhHHHHhHHHHHHhccchhhHHhhHHHHHHHHHHHHH
Q psy7247 22 LFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKV 58 (104)
Q Consensus 22 LFe~E~~dLl~dL~~lP~~~~~RKin~lvkRArlvkv 58 (104)
-+..=....|+.|..+|.+++=|+--+-+-+-|+..|
T Consensus 6 ~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv 42 (57)
T PF04716_consen 6 ALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIV 42 (57)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 3444456678888999999999988877776666554
No 10
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=28.94 E-value=1.9e+02 Score=21.00 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=13.7
Q ss_pred cHHHHHHHHhHhCCCCC
Q psy7247 85 NRVENNRVEKSHSSPIT 101 (104)
Q Consensus 85 ~~~~f~~i~~~~~~~~~ 101 (104)
...+..++.++||++|.
T Consensus 53 ~~~~~~~l~k~~~~~p~ 69 (198)
T PF02096_consen 53 MQQEMQKLYKKHGVNPL 69 (198)
T ss_pred HHHHHHHHHHHcCCCcH
Confidence 44578899999999875
No 11
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=28.94 E-value=92 Score=21.16 Aligned_cols=30 Identities=17% Similarity=0.547 Sum_probs=24.7
Q ss_pred hhH-HHHhHHHHHHhccchhhHHhhHHHHHH
Q psy7247 22 LFE-DEEQDLFKDLQTLPKNAIIRKLNDVIK 51 (104)
Q Consensus 22 LFe-~E~~dLl~dL~~lP~~~~~RKin~lvk 51 (104)
.|. .|...|+.+|..+-.....+++|+|..
T Consensus 50 Ifn~~~r~~llkeia~iT~p~ta~~vn~Lf~ 80 (85)
T PF11116_consen 50 IFNEQERKKLLKEIAKITSPQTAKQVNELFE 80 (85)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344 457889999999999999999999875
No 12
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.91 E-value=24 Score=23.35 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=27.9
Q ss_pred HHHHHHhhCC----CCCChHHHHh--hhhcHHHHHHHHhHhCCCCCCCC
Q psy7247 62 IIGALRAEMP----STFPLELQLE--LENNRVENNRVEKSHSSPITRMQ 104 (104)
Q Consensus 62 Ii~~Lkk~MP----~~fGK~~kk~--~~~~~~~f~~i~~~~~~~~~~~~ 104 (104)
.|..+++++- .+|--++-.. ...+..+|+=|+++-|.||..||
T Consensus 12 mi~eI~~KLnmvN~gvl~~e~~d~~~~edLtdiy~mvkkkenfSpsEmq 60 (71)
T COG4840 12 MIEEIREKLNMVNVGVLDPEKYDNANYEDLTDIYDMVKKKENFSPSEMQ 60 (71)
T ss_pred HHHHHHHHHhhhhhhccCHHhcccccHHHHHHHHHHHHHhccCCHHHHH
Confidence 4455555543 3444444332 24556689999999999999886
No 13
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=26.76 E-value=26 Score=25.97 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=38.5
Q ss_pred ccccCCCCC-CCChhhHHhhHHHHhHHHHHHhccchhhHHhhHH-----HHHHHHHHHHHHHHHHHHHHhhCCC
Q psy7247 5 PCTIIWDQP-FRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLN-----DVIKRARLAKVHAFIIGALRAEMPS 72 (104)
Q Consensus 5 YiGSFWd~P-l~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin-----~lvkRArlvkvHA~Ii~~Lkk~MP~ 72 (104)
|.|.+=+++ |-+.+.-.+|++|+.++-.++- .-+.|+++=+. -++.-.+.-+|+-.-++++-+++|+
T Consensus 50 yL~g~p~q~FymSkeTyeifeeee~~ip~~iD-~VQ~AVD~Y~~e~~~lPi~~~~~~~~Vd~~kL~~YL~E~P~ 122 (140)
T PF13075_consen 50 YLGGIPDQRFYMSKETYEIFEEEEKDIPKEID-KVQKAVDQYVKETGKLPIIPYDELRQVDFFKLGHYLDELPK 122 (140)
T ss_pred hcCCCCCcceeeeHHHHHhhhHHHHhCHHHHH-HHHHHHHHHHHhcCccCCcCCCccceeeHHHHHHHHhcCCC
Confidence 777888887 4567788999999988877642 22222222111 1122223344444444777777774
No 14
>PF07806 Nod_GRP: Nodule-specific GRP repeat; InterPro: IPR012488 The region featured in this family is found repeated in a number of plant proteins, some of which are expressed specifically in nodules formed during symbiotic interactions with certain bacterial species]. Some of these proteins are also termed glycine-rich proteins (GRPs), due to the presence of a glycine-rich C-terminal region in their structures []. Bacterial infection is required for the induction of nodule-specific GRP genes, and it is thought that nodule-specific GRPs may play non-redundant roles required at specific stages of nodule development []. Members of this group of proteins may be cytosolic, whereas others are thought to be membrane-associated [].
Probab=24.75 E-value=31 Score=20.32 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=6.6
Q ss_pred ccccCCCCC
Q psy7247 5 PCTIIWDQP 13 (104)
Q Consensus 5 YiGSFWd~P 13 (104)
+=||||+.-
T Consensus 18 WgGsfw~~~ 26 (38)
T PF07806_consen 18 WGGSFWGDE 26 (38)
T ss_pred ccCcCcccc
Confidence 459999843
No 15
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.72 E-value=64 Score=28.03 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHhHHHHHHhc-cchhhHHhhHHHHHHH--HHHHHHHHHHHHHHHhhCCCCCChHH
Q psy7247 25 DEEQDLFKDLQT-LPKNAIIRKLNDVIKR--ARLAKVHAFIIGALRAEMPSTFPLEL 78 (104)
Q Consensus 25 ~E~~dLl~dL~~-lP~~~~~RKin~lvkR--ArlvkvHA~Ii~~Lkk~MP~~fGK~~ 78 (104)
++...+++++.. .|+..+.|++---.-. .=..++.+||...|++-+||+|..=+
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk 150 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK 150 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 345667777755 4998888887321111 11335689999999999999997655
No 16
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=24.66 E-value=93 Score=18.32 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=15.6
Q ss_pred hHHHHhhhhcHH----HHHHHHhHhC
Q psy7247 76 LELQLELENNRV----ENNRVEKSHS 97 (104)
Q Consensus 76 K~~kk~~~~~~~----~f~~i~~~~~ 97 (104)
.++|+..++++. ++.+|..+|.
T Consensus 13 ~eNK~ell~d~~~me~Ieerie~k~~ 38 (40)
T PF13040_consen 13 RENKQELLNDKEAMEKIEERIEEKHE 38 (40)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 466777777755 6888888774
No 17
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=23.92 E-value=53 Score=17.02 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=11.4
Q ss_pred CCCCCChhhHHhhH
Q psy7247 11 DQPFRYDLNRKLFE 24 (104)
Q Consensus 11 d~Pl~~~~~~~LFe 24 (104)
..|..|++.|++|-
T Consensus 7 ~~p~SNddFrkmfl 20 (21)
T PF05391_consen 7 AKPKSNDDFRKMFL 20 (21)
T ss_pred cCccchHHHHHHHc
Confidence 35888999999984
No 18
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=21.36 E-value=75 Score=31.88 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=43.1
Q ss_pred Cccccc-cCCCCCCCChhhHHh--hHHHHhHHHHHHhcc-chhhHHhhHHHHHH-----HHHHHHHHHHHHHHHHhhCCC
Q psy7247 2 FETPCT-IIWDQPFRYDLNRKL--FEDEEQDLFKDLQTL-PKNAIIRKLNDVIK-----RARLAKVHAFIIGALRAEMPS 72 (104)
Q Consensus 2 ~~vYiG-SFWd~Pl~~~~~~~L--Fe~E~~dLl~dL~~l-P~~~~~RKin~lvk-----RArlvkvHA~Ii~~Lkk~MP~ 72 (104)
|-+|=| .+||--|..|+||+- |.+ ...+|.+|... +......-..++.. |+++.-++..+ .||++.|.
T Consensus 1510 PD~YQG~E~wd~SLVDPDNRRPVDf~~-r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~~~L--~lRr~~p~ 1586 (1693)
T PRK14507 1510 PDTYQGTEFWDFSLVDPDNRRPVDYAA-RARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLWRLL--ADRRARPA 1586 (1693)
T ss_pred CcccCCcccccccCcCCCCCCCCCHHH-HHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHHHHH--HHHHhChh
Confidence 456776 599999999999877 555 55666776432 11100011112232 34444444433 79999999
Q ss_pred CCChH
Q psy7247 73 TFPLE 77 (104)
Q Consensus 73 ~fGK~ 77 (104)
+|...
T Consensus 1587 lF~~G 1591 (1693)
T PRK14507 1587 LFRDG 1591 (1693)
T ss_pred hhccC
Confidence 99543
No 19
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=21.00 E-value=1.2e+02 Score=18.73 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=14.3
Q ss_pred HhhhhcHHHHHHHHhHhCCC
Q psy7247 80 LELENNRVENNRVEKSHSSP 99 (104)
Q Consensus 80 k~~~~~~~~f~~i~~~~~~~ 99 (104)
++.-.-...+++++|++||+
T Consensus 23 ~~Lgv~~T~LKr~CR~~GI~ 42 (52)
T PF02042_consen 23 KELGVSVTTLKRRCRRLGIP 42 (52)
T ss_pred HHhCCCHHHHHHHHHHcCCC
Confidence 33334455799999999986
No 20
>PLN02390 molybdopterin synthase catalytic subunit
Probab=20.05 E-value=91 Score=21.78 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCChH
Q psy7247 51 KRARLAKVHAFIIGALRAEMPSTFPLE 77 (104)
Q Consensus 51 kRArlvkvHA~Ii~~Lkk~MP~~fGK~ 77 (104)
-|...-..-.++|+.||.+-| +|-|+
T Consensus 79 HR~~Af~A~~~~id~lK~~vP-IWKkE 104 (111)
T PLN02390 79 HRADALDACKFLIDELKASVP-IWKKE 104 (111)
T ss_pred CHHHHHHHHHHHHHHHhhcCC-EEEee
Confidence 467778888999999999999 66554
Done!