Query psy7247
Match_columns 104
No_of_seqs 101 out of 152
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:48:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpt_A EH domain-containing pr 99.7 7.7E-16 2.6E-20 128.2 12.3 102 2-103 257-360 (550)
2 4ap8_A Molybdopterin synthase 38.7 16 0.00054 25.5 2.0 25 52-77 107-131 (135)
3 2llk_A Cyclin-D-binding MYB-li 37.9 7.4 0.00025 24.4 0.2 45 5-50 8-52 (73)
4 2wp4_A Molybdopterin-convertin 33.2 25 0.00086 24.6 2.3 25 52-77 110-134 (147)
5 2q5w_E Molybdopterin-convertin 28.9 28 0.00096 24.4 2.0 25 52-77 102-126 (149)
6 1rxq_A YFIT; nickel-binding, h 28.0 97 0.0033 20.1 4.5 56 2-57 6-72 (178)
7 2omd_A Molybdopterin-convertin 27.6 31 0.001 24.3 2.0 25 52-77 108-132 (154)
8 1fm0_E Molybdopterin convertin 27.4 31 0.0011 24.2 2.0 25 52-77 104-128 (150)
9 1iv8_A Maltooligosyl trehalose 23.8 16 0.00054 31.9 -0.1 62 2-74 581-650 (720)
10 3rpf_A Molybdopterin synthase 22.2 45 0.0015 23.4 2.0 26 52-78 101-126 (148)
11 2x3v_A Syndapin I, protein kin 21.2 2.5E+02 0.0086 20.7 7.2 10 3-12 10-19 (337)
No 1
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.66 E-value=7.7e-16 Score=128.24 Aligned_cols=102 Identities=41% Similarity=0.621 Sum_probs=94.3
Q ss_pred CccccccCCCCCCCChhhHHhhHHHHhHHHHHHhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHh
Q psy7247 2 FETPCTIIWDQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIGALRAEMPSTFPLELQLE 81 (104)
Q Consensus 2 ~~vYiGSFWd~Pl~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin~lvkRArlvkvHA~Ii~~Lkk~MP~~fGK~~kk~ 81 (104)
.++|+|+||..|...+...++|.+|..++|.++..+|.++++++|+++++|++.++|||+|+.+++++||.+|||..+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~E~e~l~~~l~elP~~~~v~~i~~~~~~~~~~~I~a~I~v~~~sqk~i~iGk~g~~~ 336 (550)
T 2qpt_A 257 LRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVHAYIISYLKKEMPTVFGKENKKK 336 (550)
T ss_dssp CCEEESCCSSSCCSSCTTHHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCHHHHHH
T ss_pred hhhccccCCCCcccCCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccCCeEEEEEEEEEeecccceeEECCchHHH
Confidence 46899999999988899999999999999999999999999999999999999999999999999999999999999866
Q ss_pred hh--hcHHHHHHHHhHhCCCCCCC
Q psy7247 82 LE--NNRVENNRVEKSHSSPITRM 103 (104)
Q Consensus 82 ~~--~~~~~f~~i~~~~~~~~~~~ 103 (104)
.+ +++.+|++|++.||+|+|.+
T Consensus 337 ~li~~l~~~~~~i~~~~~~~~~d~ 360 (550)
T 2qpt_A 337 QLILKLPVIFAKIQLEHHISPGDF 360 (550)
T ss_dssp HHHHTHHHHHHHHHHTTCCCTTTC
T ss_pred HHHHhHHHHHHHHHHHhCCCcccc
Confidence 53 45668999999999999875
No 2
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=38.75 E-value=16 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLE 77 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~ 77 (104)
|.-.-..-.++|++||++-| +|-|+
T Consensus 107 R~~Af~A~~~~id~lK~~~P-iWKkE 131 (135)
T 4ap8_A 107 RAASLEAVSYAIDTLKAKVP-IWKKE 131 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-EEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCC-ceece
Confidence 55667778899999999999 66554
No 3
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=37.91 E-value=7.4 Score=24.37 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=26.3
Q ss_pred ccccCCCCCCCChhhHHhhHHHHhHHHHHHhccchhhHHhhHHHHH
Q psy7247 5 PCTIIWDQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVI 50 (104)
Q Consensus 5 YiGSFWd~Pl~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin~lv 50 (104)
-+|-+|-.-|..+.++.-|+.||..+|-++...--+. +.+|...+
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l 52 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL 52 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh
Confidence 3567787777778888899999999998886652222 88888776
No 4
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=33.15 E-value=25 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLE 77 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~ 77 (104)
|.-.-..-.++|++||.+-| +|-||
T Consensus 110 R~~Af~A~~~~iD~lK~~aP-iWKkE 134 (147)
T 2wp4_A 110 RAEAFDAARMCIELLKQEVP-IWKKE 134 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCC-EEEEE
Confidence 55566788999999999999 66443
No 5
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=28.86 E-value=28 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLE 77 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~ 77 (104)
|.-.-..-.++|++||.+-| +|-|+
T Consensus 102 R~~Af~A~~~~iD~lK~~aP-iWKkE 126 (149)
T 2q5w_E 102 RKDAYRANEYAIERIKEIVP-IWKKE 126 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCC-EEEEE
Confidence 45566788999999999999 66544
No 6
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=28.01 E-value=97 Score=20.05 Aligned_cols=56 Identities=7% Similarity=0.141 Sum_probs=38.3
Q ss_pred CccccccCCCC-CCCChhhH---HhhHHHHhHHHHHHhccchhhHH-------hhHHHHHHHHHHHH
Q psy7247 2 FETPCTIIWDQ-PFRYDLNR---KLFEDEEQDLFKDLQTLPKNAII-------RKLNDVIKRARLAK 57 (104)
Q Consensus 2 ~~vYiGSFWd~-Pl~~~~~~---~LFe~E~~dLl~dL~~lP~~~~~-------RKin~lvkRArlvk 57 (104)
.|-.||-||-. |....+-. ..++.+...|..-|.+||..... +-+.+++.+-..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~l~~L~~e~l~~~~~~~~wSi~evv~HL~~~~ 72 (178)
T 1rxq_A 6 LSYPIGEYKPRESISKEQKDKWIQVLEEVPAKLKQAVEVMTDSQLDTPYRDGGWTVRQVVHHLADSH 72 (178)
T ss_dssp CSCTTCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSBSSTTSCBHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 35679999975 44444333 67888888888888888765543 35778887766543
No 7
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=27.60 E-value=31 Score=24.35 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLE 77 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~ 77 (104)
|.-.-..-.++|++||.+-| +|-||
T Consensus 108 R~~Af~A~~~~iD~lK~~aP-iWKkE 132 (154)
T 2omd_A 108 REETFKACRYAVDETKKRVP-IWKKE 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-EEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCC-EEEEE
Confidence 55566778999999999999 55443
No 8
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=27.44 E-value=31 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLE 77 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~ 77 (104)
|.-.-..-.++|++||.+-| +|-|+
T Consensus 104 R~~Af~A~~~~iD~lK~~aP-iWKkE 128 (150)
T 1fm0_E 104 RSSAFEAGQFIMDYLKTRAP-FWKRE 128 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-EEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCC-EEEEE
Confidence 34455678999999999999 66554
No 9
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Probab=23.77 E-value=16 Score=31.85 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=37.4
Q ss_pred Cccccc-cCCCCCCCChhhHHh--hHHHHhHHHHHHhccchhhHHhhHHHHHH-----HHHHHHHHHHHHHHHHhhCCCC
Q psy7247 2 FETPCT-IIWDQPFRYDLNRKL--FEDEEQDLFKDLQTLPKNAIIRKLNDVIK-----RARLAKVHAFIIGALRAEMPST 73 (104)
Q Consensus 2 ~~vYiG-SFWd~Pl~~~~~~~L--Fe~E~~dLl~dL~~lP~~~~~RKin~lvk-----RArlvkvHA~Ii~~Lkk~MP~~ 73 (104)
|-+|=| .+|+.-+..|+||+- |.... .++.+|..-| + +++. |+++.-+++.+ .||++-|.+
T Consensus 581 Pd~YqG~E~~~~slvDPDNRRpvd~~~r~-~~l~~~~~~~-------~-~l~~~~~~g~~K~~~~~~~l--~~R~~~p~l 649 (720)
T 1iv8_A 581 PDFYQGTEIWRYLLTDPDNRVPVDFKKLH-EILEKSXKFE-------K-NMLESMDDGRIKMYLTYXLL--SLRKQLAED 649 (720)
T ss_dssp EEEETTTTSCCCCCSTTGGGCCCCHHHHH-HHHHTCSSCC-------T-HHHHCGGGSHHHHHHHHHHH--HHHHHTHHH
T ss_pred CccccCcCcccccCCCCCCCCCCChHHHH-HHHHHhhccc-------h-hhhcccccchHHHHHHHHHH--HHHhhchhh
Confidence 456766 499999999999987 54433 3455554322 2 3322 34444433332 578888888
Q ss_pred C
Q psy7247 74 F 74 (104)
Q Consensus 74 f 74 (104)
|
T Consensus 650 f 650 (720)
T 1iv8_A 650 F 650 (720)
T ss_dssp H
T ss_pred h
Confidence 7
No 10
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=22.20 E-value=45 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLEL 78 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~~ 78 (104)
|.-.-..-.++|+.||.+-| +|-||-
T Consensus 101 R~~Af~A~~~~id~lK~~~P-iWKkE~ 126 (148)
T 3rpf_A 101 RKNALELYENFIEDFKHNAP-IWKYDL 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCC-EEEEEE
Confidence 45556677899999999999 666553
No 11
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=21.19 E-value=2.5e+02 Score=20.67 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=5.4
Q ss_pred ccccccCCCC
Q psy7247 3 ETPCTIIWDQ 12 (104)
Q Consensus 3 ~vYiGSFWd~ 12 (104)
..|..|||+.
T Consensus 10 ~~~~~~FW~~ 19 (337)
T 2x3v_A 10 EEITDSFWEV 19 (337)
T ss_dssp ----CCTTST
T ss_pred cccccCCCCC
Confidence 4678899986
Done!