Query psy7247
Match_columns 104
No_of_seqs 101 out of 152
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 21:48:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7247.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7247hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzea_ a.24.18.1 (A:) Oxygen- 35.1 38 0.0028 20.9 5.1 43 9-52 1-43 (112)
2 d1s05a_ a.24.3.2 (A:) Cytochro 25.8 34 0.0025 21.1 3.6 45 26-75 7-56 (129)
3 d1fm0e_ d.41.5.1 (E:) Molybdop 22.7 20 0.0015 23.5 2.0 26 52-78 103-128 (149)
4 d2cqha1 d.58.7.1 (A:2-81) IGF- 19.1 26 0.0019 19.4 1.7 23 1-24 1-23 (80)
5 d2di4a1 a.269.1.1 (A:406-607) 15.8 70 0.0051 20.5 3.6 23 80-102 177-199 (202)
6 d1od6a_ c.26.1.3 (A:) Phosphop 15.6 16 0.0012 21.8 0.1 15 1-17 1-15 (160)
7 d2qalr1 a.4.8.1 (R:19-73) Ribo 15.1 48 0.0035 18.1 2.2 16 41-56 31-46 (55)
8 d2ivda2 d.16.1.5 (A:307-414) P 14.9 24 0.0017 21.3 0.8 29 2-30 56-84 (108)
9 d1mo6a2 d.48.1.1 (A:270-329) R 14.6 63 0.0046 18.0 2.6 21 75-95 33-54 (60)
10 d1xp8a2 d.48.1.1 (A:283-341) R 13.8 69 0.005 17.8 2.7 21 75-95 32-53 (59)
No 1
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=35.06 E-value=38 Score=20.88 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=29.2
Q ss_pred CCCCCCCChhhHHhhHHHHhHHHHHHhccchhhHHhhHHHHHHH
Q psy7247 9 IWDQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKR 52 (104)
Q Consensus 9 FWd~Pl~~~~~~~LFe~E~~dLl~dL~~lP~~~~~RKin~lvkR 52 (104)
||-+|+...+...=...-..+| .+|.++...-.|.-+...+++
T Consensus 1 f~~~~l~p~eaa~ri~~sa~~L-~~l~~lI~k~~W~~v~~~Lr~ 43 (112)
T d1nzea_ 1 FYLQPLPPTEAAQRAKVSASEI-LNVKQFIDRKAWPSLQNDLRL 43 (112)
T ss_dssp CCCCCCCTTTHHHHHHHHHHHH-HTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHH
Confidence 7888887766555555555566 778887777777776665553
No 2
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=25.75 E-value=34 Score=21.14 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=33.7
Q ss_pred HHhHHHHHHhccchhhHHhhHHHHHHH-----HHHHHHHHHHHHHHHhhCCCCCC
Q psy7247 26 EEQDLFKDLQTLPKNAIIRKLNDVIKR-----ARLAKVHAFIIGALRAEMPSTFP 75 (104)
Q Consensus 26 E~~dLl~dL~~lP~~~~~RKin~lvkR-----ArlvkvHA~Ii~~Lkk~MP~~fG 75 (104)
+++++++.+ ......|..+++- +..++.+|-.|..+-+.+|.+|.
T Consensus 7 ~Rq~~mk~~-----~~~~~~l~~m~kg~~~~d~~~~~~~a~~l~~~a~~~~~~Fp 56 (129)
T d1s05a_ 7 KTQKLMKDN-----GRNMMVLGAIAKGEKPYDQAAVDAALKQFDETAKDLPKLFP 56 (129)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHTCTTCCSHHHHHHHHHHHHGGGSTTTSCC
T ss_pred HHHHHHHHH-----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 345555554 3456778888874 57788899999999999999994
No 3
>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}
Probab=22.69 E-value=20 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChHH
Q psy7247 52 RARLAKVHAFIIGALRAEMPSTFPLEL 78 (104)
Q Consensus 52 RArlvkvHA~Ii~~Lkk~MP~~fGK~~ 78 (104)
|...-..-.++|+.||.+-| +|-|+.
T Consensus 103 R~~Af~a~~~~id~lK~~vP-iWKkE~ 128 (149)
T d1fm0e_ 103 RSSAFEAGQFIMDYLKTRAP-FWKREA 128 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCC-eEeeEe
Confidence 66677788999999999999 776664
No 4
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.15 E-value=26 Score=19.45 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=12.7
Q ss_pred CCccccccCCCCCCCChhhHHhhH
Q psy7247 1 MFETPCTIIWDQPFRYDLNRKLFE 24 (104)
Q Consensus 1 ~~~vYiGSFWd~Pl~~~~~~~LFe 24 (104)
|-+||||..= ......+-+.+|.
T Consensus 1 mn~l~V~nLp-~~~te~~L~~~F~ 23 (80)
T d2cqha1 1 MNKLYIGNLS-PAVTADDLRQLFG 23 (80)
T ss_dssp CCCEEEECCC-TTCCHHHHHHHHH
T ss_pred CCEEEEECCC-CCCCHHHHHHHHH
Confidence 7789999852 2233334445553
No 5
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=15.84 E-value=70 Score=20.48 Aligned_cols=23 Identities=13% Similarity=-0.187 Sum_probs=17.4
Q ss_pred HhhhhcHHHHHHHHhHhCCCCCC
Q psy7247 80 LELENNRVENNRVEKSHSSPITR 102 (104)
Q Consensus 80 k~~~~~~~~f~~i~~~~~~~~~~ 102 (104)
+++.....++..|.++|++++..
T Consensus 177 e~etL~~~ei~~il~~~~~~~~~ 199 (202)
T d2di4a1 177 EKETITCEEFVEVFKLYGIELKD 199 (202)
T ss_dssp HHSEECHHHHHHHHHHHTCCCCC
T ss_pred HhCccCHHHHHHHHHHCCCCCcc
Confidence 33455567899999999998753
No 6
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=15.63 E-value=16 Score=21.75 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=10.5
Q ss_pred CCccccccCCCCCCCCh
Q psy7247 1 MFETPCTIIWDQPFRYD 17 (104)
Q Consensus 1 ~~~vYiGSFWd~Pl~~~ 17 (104)
|-.+|.|||- |...+
T Consensus 1 Mk~ifgGsFd--P~H~G 15 (160)
T d1od6a_ 1 MHVVYPGSFD--PLTNG 15 (160)
T ss_dssp CEEEEEECCT--TCCHH
T ss_pred CeEEeeeccC--CcCHH
Confidence 5558889987 77654
No 7
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=15.13 E-value=48 Score=18.14 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=13.1
Q ss_pred hHHhhHHHHHHHHHHH
Q psy7247 41 AIIRKLNDVIKRARLA 56 (104)
Q Consensus 41 ~~~RKin~lvkRArlv 56 (104)
...|+|.-.|||||..
T Consensus 31 k~Qr~l~~aIkrAR~~ 46 (55)
T d2qalr1 31 KYQRQLARAIKRARYL 46 (55)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4568999999999864
No 8
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Probab=14.87 E-value=24 Score=21.29 Aligned_cols=29 Identities=7% Similarity=-0.062 Sum_probs=17.1
Q ss_pred CccccccCCCCCCCChhhHHhhHHHHhHH
Q psy7247 2 FETPCTIIWDQPFRYDLNRKLFEDEEQDL 30 (104)
Q Consensus 2 ~~vYiGSFWd~Pl~~~~~~~LFe~E~~dL 30 (104)
.+||+|..|+..+...+..+|-+.-.+||
T Consensus 56 lrv~~Gg~~~~~~~~~~d~~l~~~a~~dL 84 (108)
T d2ivda2 56 YSCMVGGARQPGLVEQDEDALAALAREEL 84 (108)
T ss_dssp EEEEEECTTCGGGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcccccCCHHHHHHHHHHHH
Confidence 47899998887555444444444444433
No 9
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.57 E-value=63 Score=17.98 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=14.6
Q ss_pred ChHHHHhh-hhcHHHHHHHHhH
Q psy7247 75 PLELQLEL-ENNRVENNRVEKS 95 (104)
Q Consensus 75 GK~~kk~~-~~~~~~f~~i~~~ 95 (104)
|+++.+.- ..+|..+.+|..+
T Consensus 33 Gre~a~~~L~enpel~~eie~~ 54 (60)
T d1mo6a2 33 GKENARNFLVENADVADEIEKK 54 (60)
T ss_dssp SHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHH
Confidence 78887775 4677777777643
No 10
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=13.75 E-value=69 Score=17.76 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=14.5
Q ss_pred ChHHHHhh-hhcHHHHHHHHhH
Q psy7247 75 PLELQLEL-ENNRVENNRVEKS 95 (104)
Q Consensus 75 GK~~kk~~-~~~~~~f~~i~~~ 95 (104)
|+++.+.. ..+|..+.+|..+
T Consensus 32 Gre~a~~~L~enpel~~eie~~ 53 (59)
T d1xp8a2 32 GKEKTIAYIAERPEMEQEIRDR 53 (59)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCHHHHHHHHHH
Confidence 78887775 4667777776543
Done!