RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7247
         (104 letters)



>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
           membrane protein, endocytosis; HET: ANP; 3.10A {Mus
           musculus}
          Length = 550

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 9   IWDQPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIGALRA 68
            W QP     NR+LFE EEQDLF+D+Q LP++A +RKLND++KRARL +VHA+II  L+ 
Sbjct: 264 FWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVHAYIISYLKK 323

Query: 69  EMPSTFPLELQLELENNRVEN--NRVEKSHSSPITRM 103
           EMP+ F  E + +    ++     +++  H       
Sbjct: 324 EMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDF 360


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 8/49 (16%)

Query: 3   ETPCTII-WDQPFRYDLNR-------KLFEDEEQDLFKDLQTLPKNAII 43
           +   T   W       L          L   E + +F  L   P +A I
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387



 Score = 33.3 bits (75), Expect = 0.008
 Identities = 16/120 (13%), Positives = 43/120 (35%), Gaps = 32/120 (26%)

Query: 9   IWDQPFRYDLN--------RKLFEDEEQD--------------LFKDLQTLPKNAIIRKL 46
           +++  F  + +        + +   EE D              LF  L +  +  + + +
Sbjct: 24  VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 47  NDVIKRARLAKVHAFIIGALRAEMPSTFPLELQLELENNRVENN--RVEKSHSSPITRMQ 104
            +V     L   + F++  ++ E      +      + +R+ N+     K +   ++R+Q
Sbjct: 84  EEV-----LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQ 135



 Score = 31.7 bits (71), Expect = 0.027
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 12  QPFRYDLNRKLFEDEEQDLFKDLQTLPKNAIIR-----KLNDVIKRARLAK---VH 59
           QP    +  +++ ++   L+ D Q   K  + R     KL   +   R AK   + 
Sbjct: 104 QP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156



 Score = 26.7 bits (58), Expect = 1.4
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 19  NRKLFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIGALRA 68
           N   +E     +   L  + +N I  K  D+++ A +A+  A    A + 
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586



 Score = 26.7 bits (58), Expect = 1.8
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 55  LAKVHAFIIGALRAEMPSTFPLELQLELENNRVENNRVE 93
           L K        L  E+ +T P  L +  E+ R      +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345


>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid
          binding DNA repair protein, DNA-binding protein; 2.10A
          {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
          Length = 180

 Score = 27.6 bits (62), Expect = 0.55
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 22 LFEDEEQDLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIGALRAEMPSTFPLELQL 80
          L  D++  L  +LQ +   A     + + ++  + +V A +             L L +
Sbjct: 40 LLGDDDATLISELQQMFPAADNAPADLMFQQH-VREVIASLNQRDT-----PLTLPLDI 92


>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
           HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
           3udx_A* 3ue0_A* 3ue1_A*
          Length = 731

 Score = 26.1 bits (58), Expect = 2.8
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 4   TPCTIIWDQPFRYD 17
           TP +++ D P    
Sbjct: 442 TPYSMVNDSPITIG 455


>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
           c.2.1.1 PDB: 1iyz_A 2cf2_D
          Length = 302

 Score = 25.6 bits (57), Expect = 3.7
 Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 7/50 (14%)

Query: 35  QTLPKNAII-------RKLNDVIKRARLAKVHAFIIGALRAEMPSTFPLE 77
           + + +N  +             +    L  +   +   LR  +   FP  
Sbjct: 231 RLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFA 280


>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical;
           PFAM04748, structural PSI, protein structure initiative;
           2.50A {Bacillus halodurans} SCOP: c.6.2.7
          Length = 245

 Score = 24.6 bits (53), Expect = 6.6
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 29  DLFKDLQTLPKNAIIRKLNDVIKRARLAKVHAFIIGALRAEMPSTF 74
            +F D     +  +I+ +  + K+A+        IG +      T+
Sbjct: 157 SIFLDNTHSSRKEVIKNMRKLAKKAK-QGSEPIGIGHVGVRGDETY 201


>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
           c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
           1bhq_1 1bho_1 1idn_1 3qa3_G
          Length = 194

 Score = 24.6 bits (54), Expect = 7.2
 Identities = 10/38 (26%), Positives = 12/38 (31%)

Query: 43  IRKLNDVIKRARLAKVHAFIIGALRAEMPSTFPLELQL 80
                DVI  A    V  ++IG   A        EL  
Sbjct: 122 PLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNT 159


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,537,763
Number of extensions: 80816
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 19
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)