BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7249
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 273 bits (698), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 132/188 (70%), Positives = 147/188 (78%), Gaps = 10/188 (5%)
Query: 82 RFYAVVKDPESSSRTKGVKRKTRHSQDPPVEHHVGWILDVKEHRPRTSSV-SSTGTSPC- 139
RFYA RT KRK RH+ +PPVE HVGW+LD EHRPRT+S+ SS GTSP
Sbjct: 1254 RFYAAPNSHSIDPRTP-RKRKLRHTANPPVEAHVGWLLDTVEHRPRTTSMGSSAGTSPTA 1312
Query: 140 -------SSVPNSLPSFQHPSHALLKERHFTQEAYHKYHSRCLRERSRLGPGKSQEMNTL 192
SSVP SLP FQHPSHALLKE +FTQ+AYHKYHSRCL+ER RLG G+SQEMNTL
Sbjct: 1313 SSYGSFGSSVPQSLPVFQHPSHALLKENNFTQQAYHKYHSRCLKERRRLGYGQSQEMNTL 1372
Query: 193 YRFWSFFLRDNFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEKKFRPELYEDFQ 252
YRFWSFFLR+NFN++MY EFRSLA EDA GFRYG ECLFR+FSYGLEKKFRP +Y+DFQ
Sbjct: 1373 YRFWSFFLRENFNKSMYNEFRSLALEDAGNGFRYGLECLFRFFSYGLEKKFRPNIYQDFQ 1432
Query: 253 IETIHDYE 260
ETI DYE
Sbjct: 1433 DETIADYE 1440
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 17 RFYAVVKDPESSSRTKGVKRKTRHSQDPPVEHHVGWILDVKEHRPRTSS 65
RFYA RT KRK RH+ +PPVE HVGW+LD EHRPRT+S
Sbjct: 1254 RFYAAPNSHSIDPRTP-RKRKLRHTANPPVEAHVGWLLDTVEHRPRTTS 1301
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 250 bits (638), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 119/188 (63%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 79 KTPRFYAVVKDPESSSRTKGVKRKTRHSQDPPVEHHVGWILDVKEHRPRTSSVSST---G 135
+TPRFY VVK+ + KRKTRHS +PP+E HVGW++D +EHRPRT+S+SS+ G
Sbjct: 773 QTPRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEG 832
Query: 136 TSPCSS---VPNSLPSFQHPSHALLKERHFTQEAYHKYHSRCLRERSRLGPGKSQEMNTL 192
T S P SLP FQHPSH LLKE FTQ YHKY RCL ER RLG G+SQEMNTL
Sbjct: 833 TPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTL 892
Query: 193 YRFWSFFLRDNFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEKKFRPELYEDFQ 252
+RFWSFFLRD+FN+ MY+EF+ LA EDA G+RYG ECLFRY+SYGLEKKFR ++++DFQ
Sbjct: 893 FRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQ 952
Query: 253 IETIHDYE 260
ET+ DYE
Sbjct: 953 EETVKDYE 960
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/188 (62%), Positives = 142/188 (75%), Gaps = 6/188 (3%)
Query: 79 KTPRFYAVVKDPESSSRTKGVKRKTRHSQDPPVEHHVGWILDVKEHRPRTSSVSST---G 135
+T RFY VVK+ + KRKTRHS +PP+E HVGW++D +EHRPRT+S+SS+ G
Sbjct: 796 QTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEG 855
Query: 136 TSPCSS---VPNSLPSFQHPSHALLKERHFTQEAYHKYHSRCLRERSRLGPGKSQEMNTL 192
T S P SLP FQHPSH LLKE FTQ YHKY RCL ER RLG G+SQEMNTL
Sbjct: 856 TPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTL 915
Query: 193 YRFWSFFLRDNFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEKKFRPELYEDFQ 252
+RFWSFFLRD+FN+ MY+EF+ LA EDA G+RYG ECLFRY+SYGLEKKFR ++++DFQ
Sbjct: 916 FRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQ 975
Query: 253 IETIHDYE 260
ET+ DYE
Sbjct: 976 EETVKDYE 983
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 241 bits (615), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/191 (60%), Positives = 140/191 (73%), Gaps = 9/191 (4%)
Query: 79 KTPRFYAVVKDPESSSRTKGVKRKTRHSQDPPVEHHVGWILDVKEHRPRTSSVSSTGTSP 138
KTPRFY VVK+P++ KRKTRHS +PP+E HVGW++D ++ P TSSVS++ SP
Sbjct: 615 KTPRFYPVVKEPKAIDVKSPRKRKTRHSTNPPLECHVGWVMDSRDRGPGTSSVSTSNASP 674
Query: 139 C---------SSVPNSLPSFQHPSHALLKERHFTQEAYHKYHSRCLRERSRLGPGKSQEM 189
P+S P FQHPSH LLKE FTQ+ YHKY RCL ER RLG G+SQEM
Sbjct: 675 SEGAPLAGSYGCTPHSFPKFQHPSHELLKENGFTQQVYHKYRRRCLSERKRLGIGQSQEM 734
Query: 190 NTLYRFWSFFLRDNFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEKKFRPELYE 249
NTL+RFWSFFLRD+FN+ MY+EFR LA EDA +RYG ECLFR++SYGLEKKFR E+++
Sbjct: 735 NTLFRFWSFFLRDHFNKKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEKKFRREIFQ 794
Query: 250 DFQIETIHDYE 260
DFQ ET DYE
Sbjct: 795 DFQEETKKDYE 805
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,695,835
Number of Sequences: 539616
Number of extensions: 4220747
Number of successful extensions: 11251
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 11149
Number of HSP's gapped (non-prelim): 126
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)