Query psy7249
Match_columns 261
No_of_seqs 128 out of 160
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 21:51:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00684 DM15 Tandem repeat 99.7 2.6E-18 5.6E-23 117.3 3.3 39 161-202 1-39 (39)
2 smart00684 DM15 Tandem repeat 99.6 1.4E-15 3E-20 103.9 3.8 39 203-241 1-39 (39)
3 PF04844 Ovate: Transcriptiona 41.4 99 0.0021 23.1 5.6 51 207-257 3-56 (59)
4 TIGR01568 A_thal_3678 uncharac 34.9 1.3E+02 0.0029 23.0 5.5 50 207-256 9-62 (66)
5 PF04718 ATP-synt_G: Mitochond 18.7 1.3E+02 0.0029 24.2 3.1 32 204-235 57-88 (103)
6 cd05133 RasGAP_IQGAP1 IQGAP1 i 14.7 3.6E+02 0.0078 26.5 5.5 61 198-258 8-70 (360)
7 COG1137 YhbG ABC-type (unclass 11.7 2.4E+02 0.0052 26.6 3.2 58 173-257 71-133 (243)
8 PF02083 Urotensin_II: Urotens 11.3 88 0.0019 16.8 0.1 7 228-234 4-10 (12)
9 cd05131 RasGAP_IQGAP2 IQGAP2 i 10.4 6.7E+02 0.014 24.2 5.8 61 198-258 8-70 (339)
10 PF02807 ATP-gua_PtransN: ATP: 10.2 2.1E+02 0.0045 22.2 1.9 16 246-261 59-74 (76)
No 1
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=99.72 E-value=2.6e-18 Score=117.30 Aligned_cols=39 Identities=46% Similarity=0.985 Sum_probs=36.3
Q ss_pred CccHHHHHHHHHHHHHhhhhcCCCCcccchhhHHHHHHHHHH
Q psy7249 161 HFTQEAYHKYHSRCLRERSRLGPGKSQEMNTLYRFWSFFLRD 202 (261)
Q Consensus 161 gF~~~~Y~~fr~~aL~eR~~~g~G~s~eMn~LfRFwSyfL~~ 202 (261)
+||++||++||++||+||++.| ++|||||||||||||++
T Consensus 1 ~Fn~~~Y~eFr~laled~~~~~---~~gm~~LfRFwsy~L~~ 39 (39)
T smart00684 1 NFNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39 (39)
T ss_pred CchhhHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhccC
Confidence 4999999999999999999655 99999999999999985
No 2
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=99.58 E-value=1.4e-15 Score=103.93 Aligned_cols=39 Identities=56% Similarity=1.007 Sum_probs=37.5
Q ss_pred HhhHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhhccc
Q psy7249 203 NFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEK 241 (261)
Q Consensus 203 ~Fn~~mY~eFr~lAleD~~~g~~YGLE~l~~Fy~y~Lek 241 (261)
|||.+||+||+++||||++++..||||||++||+|+|++
T Consensus 1 ~Fn~~~Y~eFr~laled~~~~~~~gm~~LfRFwsy~L~~ 39 (39)
T smart00684 1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39 (39)
T ss_pred CchhhHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhccC
Confidence 799999999999999999998899999999999999975
No 3
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=41.45 E-value=99 Score=23.09 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhcccc---hhHHHHHHHhhhhcccccchHHHHHHHHHHHh
Q psy7249 207 NMYKEFRSLAREDASLGFR---YGYECLFRYFSYGLEKKFRPELYEDFQIETIH 257 (261)
Q Consensus 207 ~mY~eFr~lAleD~~~g~~---YGLE~l~~Fy~y~Lek~fr~~v~~dF~~~~l~ 257 (261)
+=|.|||+--+|-+.+... -.||-|++.|=-.-.+..-..|.+.|.+....
T Consensus 3 DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~ 56 (59)
T PF04844_consen 3 DPYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVE 56 (59)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence 3489999999998887533 47999999887777788899999999887654
No 4
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=34.87 E-value=1.3e+02 Score=22.97 Aligned_cols=50 Identities=18% Similarity=0.033 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhccc---c-hhHHHHHHHhhhhcccccchHHHHHHHHHHH
Q psy7249 207 NMYKEFRSLAREDASLGF---R-YGYECLFRYFSYGLEKKFRPELYEDFQIETI 256 (261)
Q Consensus 207 ~mY~eFr~lAleD~~~g~---~-YGLE~l~~Fy~y~Lek~fr~~v~~dF~~~~l 256 (261)
+=|.|||+--+|-+.+.. . -.||.|+..|=-.-.+.....|.+.|.+...
T Consensus 9 DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~ 62 (66)
T TIGR01568 9 DPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVDILS 62 (66)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHH
Confidence 458999999888887643 2 4689999998877778888999999988764
No 5
>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=18.71 E-value=1.3e+02 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHHh
Q psy7249 204 FNRNMYKEFRSLAREDASLGFRYGYECLFRYF 235 (261)
Q Consensus 204 Fn~~mY~eFr~lAleD~~~g~~YGLE~l~~Fy 235 (261)
.-..+.+-+++|+.+|+.....+|+|++.=|+
T Consensus 57 ~~~~~~~~~~~l~~~e~~~~~l~~~Ev~~wF~ 88 (103)
T PF04718_consen 57 SPKSKLKQWKNLTVKEAAKNGLVGAEVYGWFF 88 (103)
T ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHh
Confidence 33556777999999999999999999987665
No 6
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=14.74 E-value=3.6e+02 Score=26.50 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=50.7
Q ss_pred HHHHHHhhHHHHHHHHH--HHHHHhhcccchhHHHHHHHhhhhcccccchHHHHHHHHHHHhh
Q psy7249 198 FFLRDNFNRNMYKEFRS--LAREDASLGFRYGYECLFRYFSYGLEKKFRPELYEDFQIETIHD 258 (261)
Q Consensus 198 yfL~~~Fn~~mY~eFr~--lAleD~~~g~~YGLE~l~~Fy~y~Lek~fr~~v~~dF~~~~l~d 258 (261)
|+|.+-|..-|-+||.. -++.|+-.++..-..-+..|+.-+-.+.|=++|.......+++|
T Consensus 8 ~lLLklf~~~l~~Ei~~~~~~~~dllr~Ns~~~km~~~y~r~~~g~~yLk~vL~p~I~~iie~ 70 (360)
T cd05133 8 YLLLRLFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDD 70 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHhccCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhcC
Confidence 78999999999999997 35999999988877778889886666777788888888877764
No 7
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=11.68 E-value=2.4e+02 Score=26.63 Aligned_cols=58 Identities=33% Similarity=0.475 Sum_probs=32.3
Q ss_pred HHHHhhhhcCCCCc-ccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhhcccccch----HH
Q psy7249 173 RCLRERSRLGPGKS-QEMNTLYRFWSFFLRDNFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEKKFRP----EL 247 (261)
Q Consensus 173 ~aL~eR~~~g~G~s-~eMn~LfRFwSyfL~~~Fn~~mY~eFr~lAleD~~~g~~YGLE~l~~Fy~y~Lek~fr~----~v 247 (261)
+-+-+|.++|+||- +|- ++ ||+|+++|. |.+.+.+..-.+.+.-|+ .|
T Consensus 71 lPm~~RArlGigYLpQE~-SI-------------------Fr~LtV~dN-------i~~vlE~~~~d~~~~~~~~~l~~L 123 (243)
T COG1137 71 LPMHKRARLGIGYLPQEA-SI-------------------FRKLTVEDN-------IMAVLEIREKDLKKAERKEELDAL 123 (243)
T ss_pred CChHHHhhcCcccccccc-hH-------------------hhcCcHHHH-------HHHHHhhhhcchhHHHHHHHHHHH
Confidence 34567899999995 443 22 677888773 444444444333322222 45
Q ss_pred HHHHHHHHHh
Q psy7249 248 YEDFQIETIH 257 (261)
Q Consensus 248 ~~dF~~~~l~ 257 (261)
.++|+-..|.
T Consensus 124 L~ef~i~hlr 133 (243)
T COG1137 124 LEEFHITHLR 133 (243)
T ss_pred HHHhchHHHh
Confidence 5555544443
No 8
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=11.30 E-value=88 Score=16.85 Aligned_cols=7 Identities=43% Similarity=1.393 Sum_probs=4.8
Q ss_pred HHHHHHH
Q psy7249 228 YECLFRY 234 (261)
Q Consensus 228 LE~l~~F 234 (261)
-||||.|
T Consensus 4 ~~CFWKY 10 (12)
T PF02083_consen 4 SECFWKY 10 (12)
T ss_pred cchhhhh
Confidence 4777765
No 9
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=10.39 E-value=6.7e+02 Score=24.21 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHHHHhhHHHHHHHHH--HHHHHhhcccchhHHHHHHHhhhhcccccchHHHHHHHHHHHhh
Q psy7249 198 FFLRDNFNRNMYKEFRS--LAREDASLGFRYGYECLFRYFSYGLEKKFRPELYEDFQIETIHD 258 (261)
Q Consensus 198 yfL~~~Fn~~mY~eFr~--lAleD~~~g~~YGLE~l~~Fy~y~Lek~fr~~v~~dF~~~~l~d 258 (261)
|+|.+-|..-|.+|+.. -++.|+-.++..=..-+..|+.-.....|=.+|+....++.+++
T Consensus 8 ~lllkl~~~~l~~Ei~~~~~~~~d~~r~Ns~~~km~~~y~r~~~g~~yLk~lL~p~v~~ii~~ 70 (339)
T cd05131 8 YLLLKLFETALREEIKSKVDQIQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKEIIED 70 (339)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHhccCcHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcC
Confidence 78999999999999996 35899988877633334577774444555566777777766553
No 10
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=10.18 E-value=2.1e+02 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhC
Q psy7249 246 ELYEDFQIETIHDYEN 261 (261)
Q Consensus 246 ~v~~dF~~~~l~d~~~ 261 (261)
+||++|-..+|+||+.
T Consensus 59 ~vF~~lfdpvI~dyH~ 74 (76)
T PF02807_consen 59 DVFKELFDPVIEDYHG 74 (76)
T ss_dssp HHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3788888888888864
Done!