Query psy7249
Match_columns 261
No_of_seqs 128 out of 160
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:51:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_E RPL6; ribosome, eukaryo 20.5 57 0.0019 28.4 2.7 21 6-26 6-26 (191)
2 3izc_G 60S ribosomal protein R 13.5 81 0.0028 27.1 1.9 12 13-24 4-15 (176)
3 2x32_A X158, cellulose-binding 11.2 70 0.0024 26.5 0.8 11 47-57 4-14 (179)
4 3bqo_A Telomeric repeat-bindin 10.3 1.4E+02 0.0047 26.5 2.3 25 191-215 20-44 (211)
5 3bu8_A Telomeric repeat-bindin 9.3 1.3E+02 0.0044 27.0 1.8 25 191-215 14-38 (235)
6 3gwb_A Peptidase M16 inactive 8.7 1.6E+02 0.0055 25.5 2.2 64 158-222 338-402 (434)
7 3eoq_A Putative zinc protease; 7.3 2.2E+02 0.0074 24.8 2.4 65 157-222 321-386 (406)
8 4f43_A Protelomerase; recombin 7.2 2.6E+02 0.0089 26.1 3.0 32 145-176 78-109 (320)
9 3on0_A Protein TRAM; DNA bindi 6.4 89 0.003 25.7 -0.6 15 159-176 56-70 (127)
10 2lez_A Secreted effector prote 6.0 3.5E+02 0.012 22.6 2.9 39 215-254 6-44 (145)
No 1
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=20.46 E-value=57 Score=28.42 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=14.4
Q ss_pred CCCCccCCCCCceecccCCCC
Q psy7249 6 SGRESQRRKTPRFYAVVKDPE 26 (261)
Q Consensus 6 ~~~~~~~~~~~Rfy~v~k~~~ 26 (261)
.|......++|||||....+.
T Consensus 6 ~~~~~~~~k~p~~YPtedv~~ 26 (191)
T 4a18_E 6 AGKNRGVSKISKWYKADDEAT 26 (191)
T ss_dssp CCTTSSTTSHHHHCCCCCSCC
T ss_pred cCCCcccccccccCCcccccc
Confidence 355555678999999755443
No 2
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=13.51 E-value=81 Score=27.13 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=9.3
Q ss_pred CCCCceecccCC
Q psy7249 13 RKTPRFYAVVKD 24 (261)
Q Consensus 13 ~~~~Rfy~v~k~ 24 (261)
.++|||||....
T Consensus 4 ~k~p~~YPtedv 15 (176)
T 3izc_G 4 QKAPKWYPSEDV 15 (176)
T ss_dssp SCCCCCCCCCCC
T ss_pred ccccCcCCcccc
Confidence 589999997443
No 3
>2x32_A X158, cellulose-binding protein; carbohydrate-binding protein, oxidoreduction, marine bacteri polyisoprenoid transport; HET: OTP; 1.55A {Saccharophagus degradans} PDB: 2x34_A*
Probab=11.20 E-value=70 Score=26.52 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.1
Q ss_pred cccceeeccCC
Q psy7249 47 EHHVGWILDVK 57 (261)
Q Consensus 47 e~hvGW~~~~~ 57 (261)
+||+||..|+.
T Consensus 4 ~~~~~w~iD~~ 14 (179)
T 2x32_A 4 HHHLAYSLDAT 14 (179)
T ss_dssp --CEEEEECTT
T ss_pred ccccccEEccc
Confidence 57999999976
No 4
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=10.29 E-value=1.4e+02 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Q psy7249 191 TLYRFWSFFLRDNFNRNMYKEFRSL 215 (261)
Q Consensus 191 ~LfRFwSyfL~~~Fn~~mY~eFr~l 215 (261)
-.+.||.+-+..-|+.++|.||++.
T Consensus 20 WvlDfyf~~~c~aFR~~r~~dFrq~ 44 (211)
T 3bqo_A 20 WMLDFLCLSLCRAFRDGRSEDFRRT 44 (211)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4578999999999999999999985
No 5
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=9.34 E-value=1.3e+02 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Q psy7249 191 TLYRFWSFFLRDNFNRNMYKEFRSL 215 (261)
Q Consensus 191 ~LfRFwSyfL~~~Fn~~mY~eFr~l 215 (261)
-.+.||.+-|..-|+.+.|.||++.
T Consensus 14 WvlDfyf~~~c~aFR~~r~~dFrq~ 38 (235)
T 3bu8_A 14 WVLKFYFHEALRAFRGSRYGDFRQI 38 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHH
Confidence 3578999999999999999999985
No 6
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=8.65 E-value=1.6e+02 Score=25.50 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=35.2
Q ss_pred hhCCccHHHHHHHHHHHHHhhhhcCCCC-cccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q psy7249 158 KERHFTQEAYHKYHSRCLRERSRLGPGK-SQEMNTLYRFWSFFLRDNFNRNMYKEFRSLAREDASL 222 (261)
Q Consensus 158 ~~ngF~~~~Y~~fr~~aL~eR~~~g~G~-s~eMn~LfRFwSyfL~~~Fn~~mY~eFr~lAleD~~~ 222 (261)
+++|++++-..+.+...+.+-.. ..-. ..-++.|...+.+++......++.+..+.++.+|+..
T Consensus 338 ~~~~~~~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 402 (434)
T 3gwb_A 338 LKNGPTQKELDDAKRELAGSFPL-STASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKA 402 (434)
T ss_dssp HHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhhhhh-hccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHH
Confidence 34578888888877766654321 1111 1223344444444444445567777777888888654
No 7
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=7.34 E-value=2.2e+02 Score=24.77 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=40.6
Q ss_pred hhhCCccHHHHHHHHHHHHHhhhhcCCCC-cccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q psy7249 157 LKERHFTQEAYHKYHSRCLRERSRLGPGK-SQEMNTLYRFWSFFLRDNFNRNMYKEFRSLAREDASL 222 (261)
Q Consensus 157 L~~ngF~~~~Y~~fr~~aL~eR~~~g~G~-s~eMn~LfRFwSyfL~~~Fn~~mY~eFr~lAleD~~~ 222 (261)
|+++||+++-...-++..+.+-.. +... ..-++.|-+.|-++.......++.+..+.++.+|+..
T Consensus 321 l~~~~~t~~el~~ak~~l~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (406)
T 3eoq_A 321 LGREGVGEEEVERAKTPLATGLVF-AGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNA 386 (406)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHH
Confidence 445678888888877766554321 1111 1235556666666655556677778888888888764
No 8
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A {Agrobacterium tumefaciens} PDB: 4f41_A*
Probab=7.21 E-value=2.6e+02 Score=26.10 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=24.4
Q ss_pred CCCcccccchhhhhhCCccHHHHHHHHHHHHH
Q psy7249 145 SLPSFQHPSHALLKERHFTQEAYHKYHSRCLR 176 (261)
Q Consensus 145 sl~~F~hps~~lL~~ngF~~~~Y~~fr~~aL~ 176 (261)
.|-+--+|.|..|...||+.++|++=|+.-|+
T Consensus 78 ~l~~~~~~~hp~l~~~~~~~~~~~~~~~~~~~ 109 (320)
T 4f43_A 78 AIREAFGDDHPMLKIATGDAAMYDEARRVKME 109 (320)
T ss_dssp HHHHHTCTTCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHhhccCCHHHHhHHHhccch
Confidence 34345677889999999999999996654444
No 9
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=6.37 E-value=89 Score=25.66 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=7.4
Q ss_pred hCCccHHHHHHHHHHHHH
Q psy7249 159 ERHFTQEAYHKYHSRCLR 176 (261)
Q Consensus 159 ~ngF~~~~Y~~fr~~aL~ 176 (261)
++||||. +|++..|+
T Consensus 56 ~s~Fnq~---~Fnk~lLe 70 (127)
T 3on0_A 56 EGGFNQM---EYNKLMLE 70 (127)
T ss_dssp ---CCHH---HHHHHHHH
T ss_pred cCCCCHH---HHHHHHHH
Confidence 6889994 45555555
No 10
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=6.04 E-value=3.5e+02 Score=22.57 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHhhcccchhHHHHHHHhhhhcccccchHHHHHHHHH
Q psy7249 215 LAREDASLGFRYGYECLFRYFSYGLEKKFRPELYEDFQIE 254 (261)
Q Consensus 215 lAleD~~~g~~YGLE~l~~Fy~y~Lek~fr~~v~~dF~~~ 254 (261)
.|+++|-..+ ==||+++.|+.++--++--..-|+.|++.
T Consensus 6 ~am~~ATsPq-gi~E~IiNFFT~ggvrr~n~~~y~e~~e~ 44 (145)
T 2lez_A 6 AAMRQATSPK-TILEYIINFFTCGGIRRRNETQYQELIET 44 (145)
T ss_dssp HHHHTTSCHH-HHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred HHHHhccChH-HHHHHHHHhhcccchhhhhHHHHHHHHHH
Confidence 3566655432 23799999999998776667778888764
Done!