Query psy7249
Match_columns 261
No_of_seqs 128 out of 160
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 21:51:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7249.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7249hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fgea2 d.185.1.1 (A:798-993) 17.8 42 0.003 25.1 3.2 67 155-222 92-158 (196)
2 d1sska_ b.148.1.1 (A:) Nucleoc 13.6 2.5E+02 0.018 21.7 6.9 76 54-131 1-77 (158)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 11.6 47 0.0034 20.4 1.5 11 191-201 9-19 (37)
4 d1tuza_ a.39.1.7 (A:) Diacylgl 11.5 36 0.0026 24.6 1.1 45 207-251 29-78 (118)
5 d1jxha_ c.72.1.2 (A:) 4-amino- 11.4 36 0.0026 27.4 1.1 42 155-196 222-266 (266)
6 d3bqoa1 a.146.1.1 (A:62-265) T 11.4 56 0.0041 26.7 2.3 25 191-215 16-40 (204)
7 d1h6pa_ a.146.1.1 (A:) TRF2 {H 8.3 71 0.0051 26.0 1.8 25 191-215 13-37 (203)
8 d2hxva2 c.97.1.2 (A:1-147) Rib 6.0 1.4E+02 0.01 21.9 2.4 16 208-223 1-16 (147)
9 d1qh4a1 a.83.1.1 (A:2-102) Cre 5.3 1.4E+02 0.01 21.5 1.9 15 246-260 82-96 (101)
10 d1oyja1 a.45.1.1 (A:86-230) Cl 5.3 3.6E+02 0.026 18.6 4.4 20 193-212 19-38 (145)
No 1
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.80 E-value=42 Score=25.06 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=46.9
Q ss_pred hhhhhCCccHHHHHHHHHHHHHhhhhcCCCCcccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q psy7249 155 ALLKERHFTQEAYHKYHSRCLRERSRLGPGKSQEMNTLYRFWSFFLRDNFNRNMYKEFRSLAREDASL 222 (261)
Q Consensus 155 ~lL~~ngF~~~~Y~~fr~~aL~eR~~~g~G~s~eMn~LfRFwSyfL~~~Fn~~mY~eFr~lAleD~~~ 222 (261)
..|+++++++..-+..+..++..-. ........+..++.-|-+++...+...+-+.-+..|+||+..
T Consensus 92 ~~l~~~~~t~eeL~~ak~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~I~~VT~edi~~ 158 (196)
T d2fgea2 92 DFLRGLDVDQETLTKAIIGTIGDVD-SYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKD 158 (196)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 4567889999998888887776432 111112345566666667777778888888888899999764
No 2
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus, (SARS-CoV) [TaxId: 227859]}
Probab=13.58 E-value=2.5e+02 Score=21.75 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=32.9
Q ss_pred ccCCCCCCCCccccccCCCcCcCCCCCCcccccCCCCCCcccccCccccccCCCC-CCccccceeEecccCCCCCCCCc
Q psy7249 54 LDVKEHRPRTSSEAKAKSGRESQRRKTPRFYAVVKDPESSSRTKGVKRKTRHSQD-PPVEHHVGWILDVKEHRPRTSSV 131 (261)
Q Consensus 54 ~~~~ehr~~t~s~s~~~Sp~~~~~~~~Prf~P~~k~~~~~~~k~~~k~kt~hs~~-~~~e~~vgw~~~~~~~r~r~~~~ 131 (261)
|++..|+--.++.+.++..+.+.+....-+|-.++.-....++.+.+.-..-..+ .+.+++-+|.-..+ |.+.+.|
T Consensus 1 ~~~~~~~~~~~~~~~Pr~~~~~~p~~~~SwF~~L~~~~k~~~~f~~g~GVP~n~~~k~~qq~GYW~rq~R--r~r~gkG 77 (158)
T d1sska_ 1 MGSSHHHHHHSSGLVPRGSAMGLPNNTASWFTALTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATR--RVRGGDG 77 (158)
T ss_dssp CCSSCCSSCCSSCCSCCCCCCCSCSSCSCSSCEEEECSSSCCCCCTTCCSCCCSSSCSSCCEEEEEEECC--CCCCTTT
T ss_pred CCccccccccccCcccCCCCCCCCCCCcchhhhhhhcCCCCCccCCCCccccCCCCCHHHhhhhHHhhhh--hccCCCC
Confidence 3444444444455555555555555444555444311112222222111111122 35677778864432 4555544
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=11.56 E-value=47 Score=20.41 Aligned_cols=11 Identities=45% Similarity=1.298 Sum_probs=9.2
Q ss_pred hhHHHHHHHHH
Q psy7249 191 TLYRFWSFFLR 201 (261)
Q Consensus 191 ~LfRFwSyfL~ 201 (261)
.||-||-||.-
T Consensus 9 ~ly~Fw~FFag 19 (37)
T d1eysh2 9 TIWAFWLFFFG 19 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78999999864
No 4
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.52 E-value=36 Score=24.58 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHhhh----h-cccccchHHHHHH
Q psy7249 207 NMYKEFRSLAREDASLGFRYGYECLFRYFSY----G-LEKKFRPELYEDF 251 (261)
Q Consensus 207 ~mY~eFr~lAleD~~~g~~YGLE~l~~Fy~y----~-Lek~fr~~v~~dF 251 (261)
+||++|+.++......+..--.+.+-.||.- + .+..+-..||+-|
T Consensus 29 ~l~~~Fk~~~~~~~~p~g~i~~~~F~~~~~~~f~~~~~~~~l~~rlF~~F 78 (118)
T d1tuza_ 29 DVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSF 78 (118)
T ss_dssp HHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHS
T ss_pred HHHHHHhccccccCCcccccCHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 6888888776432223333455666666642 2 1234555666655
No 5
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}
Probab=11.43 E-value=36 Score=27.42 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=28.5
Q ss_pred hhhhhCCccHHHH--HHHHHHHHHhhhhcCCCCcc-cchhhHHHH
Q psy7249 155 ALLKERHFTQEAY--HKYHSRCLRERSRLGPGKSQ-EMNTLYRFW 196 (261)
Q Consensus 155 ~lL~~ngF~~~~Y--~~fr~~aL~eR~~~g~G~s~-eMn~LfRFw 196 (261)
+|++.....+-.- .+|=.+||+.-.++++|+.. -++.+|+||
T Consensus 222 ~La~G~~l~~Av~~A~~~v~~~i~~s~~~~~G~g~gp~~h~~~~~ 266 (266)
T d1jxha_ 222 LRPRHRSWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW 266 (266)
T ss_dssp HGGGSSSHHHHHHHHHHHHHHHHTTGGGCCCCSSSCBCCTTTTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcCCCchhhhhcC
Confidence 4555443333322 35668899888778888765 699999999
No 6
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.40 E-value=56 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Q psy7249 191 TLYRFWSFFLRDNFNRNMYKEFRSL 215 (261)
Q Consensus 191 ~LfRFwSyfL~~~Fn~~mY~eFr~l 215 (261)
=.+.||.+-+..-|+.+.|.||++.
T Consensus 16 Wvldfyf~~ac~aFR~~r~~dFr~~ 40 (204)
T d3bqoa1 16 WMLDFLCLSLCRAFRDGRSEDFRRT 40 (204)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4678999999999999999999985
No 7
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.34 E-value=71 Score=26.04 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Q psy7249 191 TLYRFWSFFLRDNFNRNMYKEFRSL 215 (261)
Q Consensus 191 ~LfRFwSyfL~~~Fn~~mY~eFr~l 215 (261)
=.+.|+.+-|..-|+.+.|.||++.
T Consensus 13 W~ldfy~~~~c~aFr~~~~~dF~~~ 37 (203)
T d1h6pa_ 13 WVLKFYFHEALRAFRGSRYGDFRQI 37 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3578999999999999999999985
No 8
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=6.03 E-value=1.4e+02 Score=21.92 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhcc
Q psy7249 208 MYKEFRSLAREDASLG 223 (261)
Q Consensus 208 mY~eFr~lAleD~~~g 223 (261)
||+.|.++||+-|+.+
T Consensus 1 ~he~~M~~Al~~A~~~ 16 (147)
T d2hxva2 1 MYETFMKRAIELAKKG 16 (147)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhc
Confidence 8999999999998754
No 9
>d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Probab=5.30 E-value=1.4e+02 Score=21.52 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhh
Q psy7249 246 ELYEDFQIETIHDYE 260 (261)
Q Consensus 246 ~v~~dF~~~~l~d~~ 260 (261)
.||.|+-..+|+||+
T Consensus 82 ~vF~~lFDpvI~dyH 96 (101)
T d1qh4a1 82 EVFKELFDPVIEDRH 96 (101)
T ss_dssp HHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 467777888888876
No 10
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=5.25 E-value=3.6e+02 Score=18.62 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q psy7249 193 YRFWSFFLRDNFNRNMYKEF 212 (261)
Q Consensus 193 fRFwSyfL~~~Fn~~mY~eF 212 (261)
=|||..|..+++-+.++.-+
T Consensus 19 ~R~W~~~vd~~i~~~~~~~~ 38 (145)
T d1oyja1 19 ARFWADYVDRKLYDCGSRLW 38 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 36777777666655555433
Done!