RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7249
(261 letters)
>gnl|CDD|128927 smart00684, DM15, Tandem repeat in fly CG14066 (La related
protein), human KIAA0731 and worm R144.7. Unknown
function.
Length = 39
Score = 55.5 bits (134), Expect = 7e-11
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 203 NFNRNMYKEFRSLAREDASLGFRYGYECLFRYFSYGLEK 241
NFN+NMY+EFR L ED RY CL+R++SYGL K
Sbjct: 1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
Score = 52.0 bits (125), Expect = 2e-09
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 161 HFTQEAYHKYHSRCLRERSRLGPGKSQEMNTLYRFWSFFLRD 202
+F Q Y ++ CL +R LG E+N LYRFWS+ LR
Sbjct: 1 NFNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
>gnl|CDD|151289 pfam10840, DUF2645, Protein of unknown function (DUF2645). This
family of proteins appear to be restricted to
Enterobacteriaceae. Some members in the family are
annotated as YjeO however no function for this protein
is currently known.
Length = 103
Score = 28.2 bits (63), Expect = 1.8
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 185 KSQEMNTL------YRFWSFFLRDNF 204
KS +N Y W FF+R F
Sbjct: 77 KSLFLNITAIALLGYWIWRFFIRLQF 102
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.1 bits (65), Expect = 2.7
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 1 EAKSKSGRESQRRK---TPRFYAVVKDPESSSRTKGVKRKTRHSQDPP-----VEHHVGW 52
E K++SG+E ++ K + P+ + + K + + + P E V
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE- 155
Query: 53 ILDVKEHRPRTSSEAKAKSGRESQRRKTPRFYAVVKDPESSSRTKGVKRKTRHSQDPPVE 112
+ +AKS + +K P K+P + + R+ + +
Sbjct: 156 -EPRDREEEKKRERVRAKSRPKKPPKKKPP--NKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 113 H 113
Sbjct: 213 V 213
>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a
number of closely related proteins with the
phosphosugar-binding domain SIS (Sugar ISomerase)
followed by two copies of the CBS (named after
Cystathionine Beta Synthase) domain. One is GutQ, a
protein of the glucitol operon. Another is KpsF, a
virulence factor involved in capsular polysialic acid
biosynthesis in some pathogenic strains of E. coli
[Energy metabolism, Sugars].
Length = 268
Score = 28.2 bits (63), Expect = 4.6
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 110 PVEHHVGWILDVKEHRPRTSSVSSTGTSPCSSVPNSLPSFQHPSHALLKERHFTQEAYHK 169
+ ++LD+K + +P +S +L + AL++ R+F+QE +
Sbjct: 87 SLARAADYVLDIKVEK----EACPINLAPTTSTTLTLALGDALAVALMRARNFSQEDFAS 142
Query: 170 YH 171
+H
Sbjct: 143 FH 144
>gnl|CDD|224474 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and
secretion].
Length = 137
Score = 27.3 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 60 RPRTSSE--AKAKSGRESQ----RRKTPRFYAVVKDPESSSRTKGVK 100
R S A A S R RRK F A + P ++ GVK
Sbjct: 20 RLNVISSNIANADSTRTPDGGPYRRKQVVFSAELFAPTGATGGAGVK 66
>gnl|CDD|150784 pfam10151, DUF2359, Uncharacterized conserved protein (DUF2359).
This is a 450 amino acid region of a family of proteins
conserved from insects to humans. The mouse protein,
Q8BM55, is annotated as being a putative Vitamin
K-dependent carboxylation gamma-carboxyglutamic (GLA)
domain containing protein, but this could not be
confirmed. The function is not known.
Length = 469
Score = 27.6 bits (61), Expect = 8.0
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 120 DVKEHRPRTSSVSSTGTSPCSSVPNSLPSFQHPSHALLKERHFTQEAYHKYHSRCLRERS 179
DV+ H S ++ + S ++ SH L+ + +E Y Y+S+ +
Sbjct: 284 DVRSHGSFQGSTTARFLQESGLLQVSQQAWSKVSHYSLQGNSWLEENYPTYYSKFVE--- 340
Query: 180 RLGPGKSQEMNTLYRFWSF 198
+GP Q F
Sbjct: 341 VVGPALQQAWAKTTLAGQF 359
>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 720
Score = 27.4 bits (61), Expect = 8.5
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 233 RYFSYGLEKKFRP------ELYEDFQIETIHDYE 260
YF + F P EL++ I T D+
Sbjct: 526 SYFDKYVTGDFVPKSDKVKELFKGIFIPTAADWA 559
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.395
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,084,409
Number of extensions: 1176679
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 23
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)