RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7249
         (261 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.7 bits (76), Expect = 0.061
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 17/95 (17%)

Query: 157 LKERHFTQEAYHKYHSRCLRERSRLGPGKSQEMNTLYRFWSFFLRDNFNRNMYKEFRSLA 216
           L E+   +       S  L  +      K +    L+R     + D+     Y   ++  
Sbjct: 416 LVEKQPKESTIS-IPSIYLELKV-----KLENEYALHRS----IVDH-----YNIPKTFD 460

Query: 217 REDASLGFRYGYECLFRYFSYGLEKKFRPELYEDF 251
            +D    +   Y   + +  + L+    PE    F
Sbjct: 461 SDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLF 493


>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS
           domain, structural genomics, PSI-2, P structure
           initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
           subsp} PDB: 3fna_A*
          Length = 149

 Score = 27.1 bits (61), Expect = 4.1
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 155 ALLKERHFTQEAYHKYH 171
           +  + R FT E +   H
Sbjct: 1   SNAEARGFTAEDFALSH 17


>3etn_A Putative phosphosugar isomerase involved in capsu formation;
           YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis
           nctc 9343}
          Length = 220

 Score = 27.3 bits (61), Expect = 4.6
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 155 ALLKERHFTQEAYHKYH 171
             +K   FT E Y K H
Sbjct: 189 QTMKRTEFTIEEYSKRH 205


>3fxa_A SIS domain protein; structural genomics, joint center for
           structural genomics, J protein structure initiative,
           PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
          Length = 201

 Score = 26.4 bits (59), Expect = 9.0
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 155 ALLKERHFTQEAYHKYH 171
            L+   ++T+E +   H
Sbjct: 173 CLMTYMNYTKEQFSVIH 189


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,940,156
Number of extensions: 219355
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 14
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)