RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7249
         (261 letters)



>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis
           [TaxId: 1423]}
          Length = 186

 Score = 26.3 bits (57), Expect = 3.5
 Identities = 5/59 (8%), Positives = 15/59 (25%)

Query: 114 HVGWILDVKEHRPRTSSVSSTGTSPCSSVPNSLPSFQHPSHALLKERHFTQEAYHKYHS 172
            +   +          S  +            L  +      L++++    E    +H+
Sbjct: 125 DLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHA 183


>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 78

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 193 YRFWSFFLRDNFNRNMYKEFRSLAREDA 220
           +R    FL  +  +   KE  ++  E+ 
Sbjct: 8   FRVKGKFLMGDKLQPFTKELNAIREEEI 35


>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 192

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 3/18 (16%), Positives = 10/18 (55%)

Query: 155 ALLKERHFTQEAYHKYHS 172
            ++ ++H T++     H+
Sbjct: 169 EIMMQKHLTEKDLEARHA 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 969,655
Number of extensions: 43766
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 11
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)