BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7251
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVD 81
EYYFS DNL D FLR+KMDPEG++PVTLIASF RV +LTTD+ ++ AI++SDKLEL +
Sbjct: 738 EYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFE 797
Query: 82 NFKV 85
+KV
Sbjct: 798 GYKV 801
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVD 81
EYYFS DNL RD FLR+KMD +GFLP+TLIASF RV++LTTDI+ + A++ S +E+VD
Sbjct: 412 EYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD 471
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 83.2 bits (204), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 49/60 (81%)
Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVD 81
EYYFS DNL RD FLR+KMD +GFLP+TLIASF RV++LTTDI+ + A++ S +E+V+
Sbjct: 387 EYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVE 446
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 49/60 (81%)
Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVD 81
EYYFS +NL RD FLR KMD +GFLP++LIA F RV++LTT++N +L A++ S ++E+VD
Sbjct: 224 EYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVD 283
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELV 80
EYYFS +NL +D+FLRK MD EG++P+ +ASF+R++S +TD+N + A + SD +++
Sbjct: 333 LEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDIIDVA 392
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELV 80
EYYFS +NL D +L +MD + ++P+ +A F+ VR LT DIN + +++S +++
Sbjct: 276 LEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVD 335
Query: 81 D 81
D
Sbjct: 336 D 336
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 22 EYYFSADNLVRDIFLRKKMDP-EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDK 76
EYYF NL RD FL++++ EG++PV ++ +F R++SL+ D ++ AI+KSD+
Sbjct: 52 EYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDAIEKSDE 107
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 22 EYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDK 76
EYYF NL RD FLR+++ + +G++P++++ +F R+ SL+TD++ ++ A+ KS++
Sbjct: 59 EYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEE 115
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 9 VTLITSFSHYMPFEYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRV 67
L H + EYYF NL RD FL++++ EG++P+ ++ F+R+ LTTD N +
Sbjct: 11 AALEAKICHQI--EYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVI 68
Query: 68 LLAIQKSDKLELVD 81
+ A+ KS K EL++
Sbjct: 69 VEALSKS-KAELME 81
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 9 VTLITSFSHYMPFEYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRV 67
L H + EYYF NL RD FL++++ EG++P+ ++ F+R+ LTTD N +
Sbjct: 11 AALEAKICHQI--EYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVI 68
Query: 68 LLAIQKSDKLELVD 81
+ A+ KS K EL++
Sbjct: 69 VEALSKS-KAELME 81
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
Query: 22 EYYFSADNLVRDIFLRKK--MDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
EYYF NL RD FL+++ +D +G++P+ + F+R+ LTTD N +L A++KS K EL
Sbjct: 22 EYYFGDHNLPRDKFLKQQILLD-DGWVPLETMIKFNRLSKLTTDFNTILQALKKS-KTEL 79
Query: 80 VD 81
++
Sbjct: 80 LE 81
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRV--RSLTTDINRVLLAIQK 73
EYYFS +NL D +LR K+ +GF P++LI+ F RV S D N +L A+++
Sbjct: 270 EYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRVVNMSFGGDTNLILAALRE 323
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 22 EYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELV 80
EYYF NL RD FL++++ EG++P+ + F+R+ LTTD N ++ A+ KS
Sbjct: 22 EYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKS------ 75
Query: 81 DNFKVNQIIVIADTNGKQRSDYLP 104
K N + V AD +RS P
Sbjct: 76 ---KANLMEVSADKTKIRRSPSRP 96
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 22 EYYFSADNLVRDIFLRKK--MDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
EYYF NL RD FL+++ +D G++P+ + F+R+ LTTD N +L A++KS K EL
Sbjct: 21 EYYFGDHNLPRDKFLKQQVLLD-NGWVPLETMIKFNRLSKLTTDFNIILQALKKS-KTEL 78
Query: 80 VD 81
++
Sbjct: 79 LE 80
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 22 EYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKS 74
EYYF NL RD FL++++ EG++P+ + F+R+ LTTD N ++ A+ KS
Sbjct: 22 EYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKS 75
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E+ FS +NL +D++L +MD + F+P+ +A+ ++ LTTD + +L ++ S +++
Sbjct: 127 LEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E+ FS +NL +D++L +MD + F+P+ +A+ ++ LTT+ + +L ++ S +++
Sbjct: 123 LEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQV 181
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
+++F NL +D FLR++++ +G++ ++L+ SF++++ LTTD + A++ S +EL
Sbjct: 37 DFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVEL 96
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
+++F NL +D FLR++++ +G++ ++L+ASF++++ +TTD + A++ S +E+
Sbjct: 45 DFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEI 104
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
+++F NL +D FLR++++ +G++ ++L+ SF++++ LTTD + A++ S +EL
Sbjct: 38 DFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVEL 97
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 22 EYYFSADNLVRDIFLRK--KMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E+YFS +NL +D FL K + + G++ V L+ SF +V+ LT D A++ S LEL
Sbjct: 101 EFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLEL 160
Query: 80 VDNFK 84
++ +
Sbjct: 161 NEDHR 165
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 22 EYYFSADNLVRDIFLRK--KMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E+YFS +NL +D FL K + + G++ V L+ SF +V+ LT D A++ S LEL
Sbjct: 101 EFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLEL 160
Query: 80 VDNFK 84
++ +
Sbjct: 161 NEDHR 165
>sp|Q12034|SLF1_YEAST Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLF1 PE=1 SV=1
Length = 447
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVR--SLTTDINRVLLAIQKSDKL 77
E+YFS +NL D FLR K +GF+P++LI F R+ SL D N +L +++
Sbjct: 280 EFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLSLGGDPNLILASMR----- 334
Query: 78 ELVDNFKVNQI-IVIADTNGKQR 99
E++ + + N + I + G Q+
Sbjct: 335 EVLQHKETNHLEIALGSIEGAQK 357
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDIN------RVLLAIQKS 74
E+ S +NL D++L +MD + ++P+T +A+ ++ L+TD++ R L +Q
Sbjct: 164 LEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVD 223
Query: 75 DKLELVDNFKVNQIIVI 91
+K E V + N+ IVI
Sbjct: 224 EKGEKVRPNQ-NRCIVI 239
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
+++F NL +D FLR++++ +G++ ++L+ SF++++ LTTD + A++ S +EL
Sbjct: 43 DFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVEL 102
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
+++F NL +D FLR++++ +G++ ++L+ SF++++ LTTD + A++ S +EL
Sbjct: 43 DFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVEL 102
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELV 80
E+ S +NL D++L +MD + ++P+T +A+ ++ L+TD++ +++ + +S L V
Sbjct: 166 LEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVD-LIVEVLRSLPLVQV 224
Query: 81 D 81
D
Sbjct: 225 D 225
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP-EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E+YFS N D FLR + +G++P++ IA+F+R++ +++V+ A++ S+ LE+
Sbjct: 38 EFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRP-VDKVIEALRSSEILEV 95
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 22 EYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E++F NL +D F++ ++ +G++ + ++ +F+R+++LT D+ + A++ S +E+
Sbjct: 51 EFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEV 110
Query: 80 VD 81
D
Sbjct: 111 ND 112
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 22 EYYFSADNLVRDIFL---RKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLE 78
E+YFS NL D FL +K D G++P+ IA+F R+R + ++ A++KS +L
Sbjct: 72 EFYFSDTNLPHDKFLWTTSQKND--GWVPIQTIANFKRMRRFQP-LEAIVNALRKSPELL 128
Query: 79 LVDNF--KVNQIIVIADTNGK---QRSDYL 103
VD KV ++I + + K +RS Y
Sbjct: 129 EVDEAGEKVRRMIPLVRVDNKSVMERSVYC 158
>sp|Q9D9Q6|CALR3_MOUSE Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=2
Length = 380
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 20 PFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
P+E A+ + +D++L +KM P G+L ++ F + ++ ++ +V +
Sbjct: 257 PYEDGLKAEGIDKDVWLHQKMRPAGYLTQYDLSEFENIGAIGLELWQVRSGT-------I 309
Query: 80 VDNFKVNQIIVIADTNGK 97
DNF + A+ GK
Sbjct: 310 FDNFLITDDEEYAEKFGK 327
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 21 FEYYFSADNLVR------DIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKS 74
++Y F D ++ D+ +K+ E L L R+ LT R LL + +
Sbjct: 171 YDYVFDTDAMIDYTNEEDDLLPEEKLQYEARLAQALETEEKRI--LTIQEARKLLPVHQY 228
Query: 75 DKLELVDNFKVNQIIVIADTNGKQRSDYLPN 105
K EL+ K NQ+++I G ++ LP
Sbjct: 229 -KDELLQEIKKNQVLIIMGETGSGKTTQLPQ 258
>sp|P22881|RP54_RHISN RNA polymerase sigma-54 factor OS=Rhizobium sp. (strain NGR234)
GN=rpoN PE=3 SV=2
Length = 519
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 10 TLITSFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLL 69
TL + + F + AD L+ L ++D G+L + + +R+ + D+ RVLL
Sbjct: 155 TLRETLIEQVAFAFAAPADRLIAQ-HLIDQLDEAGYLHAEIAETAARLGASAADVTRVLL 213
Query: 70 AIQKSD 75
+Q+ D
Sbjct: 214 VLQQFD 219
>sp|Q8CST0|RNJ2_STAES Ribonuclease J 2 OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_0952 PE=3 SV=2
Length = 557
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 68 LLAIQKSDKLELVDNFKVNQIIVIADTNG---KQRSDYLPNNNHLHSNNNKRLTSLRSRL 124
++ I++ D + L N ++IADT + + +PNN +H++++ + L+ L
Sbjct: 321 IMNIEEGDSIFLAITASANMEVIIADTLNELVRAGAHIIPNNKKIHASSHGCMEELKMML 380
Query: 125 TLLSP 129
++ P
Sbjct: 381 NIMKP 385
>sp|Q5HPR6|RNJ2_STAEQ Ribonuclease J 2 OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP0842 PE=3 SV=2
Length = 557
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 68 LLAIQKSDKLELVDNFKVNQIIVIADTNG---KQRSDYLPNNNHLHSNNNKRLTSLRSRL 124
++ I++ D + L N ++IADT + + +PNN +H++++ + L+ L
Sbjct: 321 IMNIEEGDSIFLAITASANMEVIIADTLNELVRAGAHIIPNNKKIHASSHGCMEELKMML 380
Query: 125 TLLSP 129
++ P
Sbjct: 381 NIMKP 385
>sp|Q57878|ATGT_METJA tRNA-guanine(15) transglycosylase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=tgtA PE=1 SV=2
Length = 655
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 5 GFLPVTLITSF---SHYMP--FEYYFSADNLVRDIF---LRKKMDPEGFLPVT----LIA 52
GF+P + T + H +P F+Y + D F L+KK+ + L + I
Sbjct: 432 GFIPYYIDTVYPLSQHEIPELFDYEKEINKRFVDEFIDWLKKKIGEDNILDIMTYNYYIN 491
Query: 53 SFSRVRSLTTDINRVLLAIQKSDKLELVDNFKVNQIIVI-ADTNGKQRSDYLPNNNHLHS 111
FS + + D R+ +Q +++D+ +N+I V+ + T G+ R +
Sbjct: 492 YFSANKKINADALRIRKMLQYQYGFDIIDDELMNKIKVVRSKTTGRLR--------QVLD 543
Query: 112 NNNKRLTSLRSRLTLLSPN 130
N + L S+RS LL P+
Sbjct: 544 ENGEILFSVRSNDNLLIPS 562
>sp|Q8C2K5|RASL3_MOUSE RAS protein activator like-3 OS=Mus musculus GN=Rasal3 PE=2 SV=1
Length = 1041
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 103 LPNNNHLHSNNNKRLTSLRSRLTLLSPNGQRMMISLLLLALTTQTIGNR 151
L + L SN + RL SL RLT + + ++ SL L L ++T G+R
Sbjct: 973 LDSKGGLPSNGSHRLKSLEQRLTEMECSQDQLRDSLQSLQLLSKTPGSR 1021
>sp|Q96JI7|SPTCS_HUMAN Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3
Length = 2443
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 7 LPVTLITSFSHYMPFEYYFSADNLVR----DIFLRKKMDPEGFLPVTLIASFSRVR 58
L V L+T Y Y F D L + ++ +RKK+DP G L L+ R R
Sbjct: 2158 LVVRLLTGIGRYNEMTYIF--DLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCR 2211
>sp|P33985|RP54_RHIML RNA polymerase sigma-54 factor OS=Rhizobium meliloti GN=rpoN PE=3
SV=1
Length = 513
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 10 TLITSFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLL 69
TL + +PF + L+ +L ++D G+L L + R+ S + D+ RVL
Sbjct: 151 TLREALIEQLPFALESGSHRLIAQ-YLIDQLDDAGYLHADLAETAQRLASASEDVTRVLD 209
Query: 70 AIQKSD 75
+Q+ D
Sbjct: 210 VLQQFD 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,740,058
Number of Sequences: 539616
Number of extensions: 1964861
Number of successful extensions: 10407
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 10249
Number of HSP's gapped (non-prelim): 170
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)