Query psy7251
Match_columns 151
No_of_seqs 139 out of 604
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 21:54:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08036 LARP_5 La RNA-binding 100.0 7.6E-33 1.6E-37 193.7 4.8 72 15-86 2-74 (75)
2 cd08035 LARP_4 La RNA-binding 100.0 6.3E-33 1.4E-37 194.4 4.2 72 15-86 2-74 (75)
3 cd08037 LARP_1 La RNA-binding 100.0 9.4E-33 2E-37 192.7 3.9 72 15-87 2-73 (73)
4 cd08038 LARP_2 La RNA-binding 100.0 1.5E-32 3.2E-37 191.7 4.4 72 15-87 2-73 (73)
5 cd08034 LARP_1_2 La RNA-bindin 100.0 2.7E-32 5.9E-37 190.3 4.6 72 15-87 2-73 (73)
6 cd08033 LARP_6 La RNA-binding 100.0 2.5E-32 5.5E-37 192.1 4.1 73 15-87 2-77 (77)
7 cd08031 LARP_4_5_like La RNA-b 100.0 6.7E-32 1.5E-36 189.1 4.0 72 15-86 2-74 (75)
8 cd08032 LARP_7 La RNA-binding 100.0 7.2E-32 1.6E-36 191.9 4.2 73 15-87 7-82 (82)
9 smart00715 LA Domain in the RN 100.0 1.5E-31 3.4E-36 189.1 3.7 76 13-88 3-80 (80)
10 cd08029 LA_like_fungal La-moti 100.0 2E-31 4.2E-36 187.1 4.0 72 15-87 2-76 (76)
11 cd08028 LARP_3 La RNA-binding 100.0 7E-31 1.5E-35 186.8 3.9 74 14-87 5-82 (82)
12 cd07323 LAM LA motif RNA-bindi 100.0 1.6E-30 3.4E-35 181.7 4.5 73 15-87 2-75 (75)
13 cd08030 LA_like_plant La-motif 100.0 1.7E-30 3.6E-35 187.7 4.0 74 14-87 2-90 (90)
14 PF05383 La: La domain; Inter 99.9 9.6E-27 2.1E-31 157.0 0.9 58 17-74 1-61 (61)
15 KOG1855|consensus 99.9 2.6E-25 5.6E-30 196.1 5.8 115 14-128 141-259 (484)
16 KOG2591|consensus 99.8 9.5E-20 2E-24 165.1 2.6 97 7-103 90-192 (684)
17 KOG4213|consensus 99.8 2.4E-19 5.3E-24 144.0 4.4 99 15-129 15-118 (205)
18 KOG2590|consensus 99.1 1.6E-11 3.5E-16 110.0 2.9 63 15-82 302-364 (448)
19 COG5193 LHP1 La protein, small 99.1 2.1E-11 4.6E-16 107.7 1.0 60 15-74 272-331 (438)
20 COG5193 LHP1 La protein, small 99.0 1.4E-10 3.1E-15 102.5 2.9 77 16-92 74-163 (438)
21 PF09421 FRQ: Frequency clock 95.4 0.015 3.3E-07 57.0 3.6 49 41-89 474-524 (989)
22 KOG2590|consensus 93.1 0.038 8.2E-07 50.3 1.0 88 16-108 102-192 (448)
23 PF01885 PTS_2-RNA: RNA 2'-pho 92.4 0.2 4.2E-06 40.3 4.1 50 40-89 27-82 (186)
24 PRK00819 RNA 2'-phosphotransfe 91.6 0.32 7E-06 39.1 4.5 49 40-89 28-78 (179)
25 KOG2278|consensus 90.6 0.3 6.4E-06 40.0 3.4 37 39-75 28-64 (207)
26 PTZ00315 2'-phosphotransferase 74.8 5.2 0.00011 37.8 4.8 50 40-89 400-456 (582)
27 COG1859 KptA RNA:NAD 2'-phosph 50.0 22 0.00047 29.6 3.6 49 40-89 54-104 (211)
28 PF10736 DUF2527: Protein of u 20.1 44 0.00095 20.6 0.4 10 20-29 15-24 (38)
No 1
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=7.6e-33 Score=193.71 Aligned_cols=72 Identities=21% Similarity=0.444 Sum_probs=69.4
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeE
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVN 86 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVR 86 (151)
+.|++||||||||+||++|.||+++|++||||||++|++|||||+||.|.+.|++||+.|+.|||+++ .|||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR 74 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR 74 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999987 5888
No 2
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=6.3e-33 Score=194.39 Aligned_cols=72 Identities=28% Similarity=0.504 Sum_probs=69.7
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeE
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVN 86 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVR 86 (151)
+.|++||||||||+||++|.||+++|+++|||||++|++|||||+||.|.+.|++||+.|+.|||++| .+||
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVR 74 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR 74 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhhCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999987 5888
No 3
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=9.4e-33 Score=192.66 Aligned_cols=72 Identities=54% Similarity=0.843 Sum_probs=69.8
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCCceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDNFKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed~kVRR 87 (151)
++|++||||||||+||++|.||+++|++||||||++|++|||||+|+.|.+.|++||+.|+.||++++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~-~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM-KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc-hhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999988 8886
No 4
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=1.5e-32 Score=191.66 Aligned_cols=72 Identities=49% Similarity=0.822 Sum_probs=69.6
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCCceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDNFKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed~kVRR 87 (151)
++|++||||||||+||++|.||+++|+++|||||++|++|||||+|+.|.+.|.+||+.|+.||++++ +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~-~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ-KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhCCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC-cccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999987 8875
No 5
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=2.7e-32 Score=190.27 Aligned_cols=72 Identities=57% Similarity=0.875 Sum_probs=69.8
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCCceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDNFKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed~kVRR 87 (151)
++|++||||||||+||++|.||+++|+++|||||++|++|||||+++.|.+.|.+||+.|+.|||+++ +|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e~-kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDE-KVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHcCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEecC-eecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999995 8985
No 6
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=2.5e-32 Score=192.10 Aligned_cols=73 Identities=41% Similarity=0.684 Sum_probs=70.2
Q ss_pred hhhhcccceecCCCCCCcchHHhhhc--CCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRR 87 (151)
++|++||||||||+||++|.||+++| ++||||||++|++|||||+++.|.+.|.+||+.|+.|||++| .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 47999999999999999999999999 789999999999999999999999999999999999999987 58997
No 7
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=6.7e-32 Score=189.12 Aligned_cols=72 Identities=33% Similarity=0.592 Sum_probs=69.7
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeE
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVN 86 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVR 86 (151)
++|++||||||||+||++|.||+++|+++|||||++|++|||||+++.|.+.|++||+.|+.|||++| ++||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR 74 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVR 74 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhCCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999987 5888
No 8
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.97 E-value=7.2e-32 Score=191.88 Aligned_cols=73 Identities=26% Similarity=0.515 Sum_probs=70.2
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcC--CCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMD--PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~--~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRR 87 (151)
++|++||||||||+||++|.||+++|+ +||||||++|++|||||+|+.|.+.|++||+.|+.|||++| ++|||
T Consensus 7 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 7 ADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 589999999999999999999999995 89999999999999999999999999999999999999987 58997
No 9
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.97 E-value=1.5e-31 Score=189.10 Aligned_cols=76 Identities=49% Similarity=0.764 Sum_probs=72.1
Q ss_pred chhhhhcccceecCCCCCCcchHHhhhcCC-CCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEec
Q psy7251 13 TSFSHYMPFEYYFSADNLVRDIFLRKKMDP-EGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQI 88 (151)
Q Consensus 13 ~~~~i~kQvEfYFSd~NL~~D~fLr~~m~~-~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRRk 88 (151)
..++|++||||||||+||++|.||+++|+. +|||||++|++|||||+++.|.+.|.+||+.|+.|||++| .+|||+
T Consensus 3 ~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR~ 80 (80)
T smart00715 3 LKQKIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRRR 80 (80)
T ss_pred HHHHHHHHHHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCcC
Confidence 457899999999999999999999999976 9999999999999999999999999999999999999987 589984
No 10
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=2e-31 Score=187.10 Aligned_cols=72 Identities=32% Similarity=0.498 Sum_probs=68.5
Q ss_pred hhhhcccceecCCCCCCcchHHhhhc--CCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRR 87 (151)
++|++||||||||+||++|.||+++| ++||||||++|++|||||+++.+ +.|.+||+.|+.|||++| ++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 58999999999999999999999999 79999999999999999999865 999999999999999987 58997
No 11
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.96 E-value=7e-31 Score=186.75 Aligned_cols=74 Identities=30% Similarity=0.584 Sum_probs=70.6
Q ss_pred hhhhhcccceecCCCCCCcchHHhhhcC-CCCcEehHhhhcccccccccCCHHHHHHHHhcCC--cEEEeCC-ceeEe
Q psy7251 14 SFSHYMPFEYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSD--KLELVDN-FKVNQ 87 (151)
Q Consensus 14 ~~~i~kQvEfYFSd~NL~~D~fLr~~m~-~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~--~LEv~ed-~kVRR 87 (151)
..+|++||||||||+||++|.||+++|+ ++|||||++|++|||||+++.|.+.|.+||+.|+ .|||++| .+|||
T Consensus 5 ~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 5 EKKIIRQIEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHHHHHHHHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCccCC
Confidence 4689999999999999999999999996 6999999999999999999999999999999999 9999987 58997
No 12
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=1.6e-30 Score=181.71 Aligned_cols=73 Identities=42% Similarity=0.717 Sum_probs=70.4
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEe
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQ 87 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRR 87 (151)
++|++||||||||+||++|.||+++|+++|||||++|++|||||+++.|.+.|.+||+.|+.|||+++ .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhcCCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999987 68986
No 13
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=1.7e-30 Score=187.70 Aligned_cols=74 Identities=36% Similarity=0.569 Sum_probs=69.4
Q ss_pred hhhhhcccceecCCCCCCcchHHhhhc--CCCCcEehHhhhcccccccccCC------------HHHHHHHHhcCCcEEE
Q psy7251 14 SFSHYMPFEYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTD------------INRVLLAIQKSDKLEL 79 (151)
Q Consensus 14 ~~~i~kQvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rvk~lt~d------------~~~I~~Al~~S~~LEv 79 (151)
+++|++||||||||+||++|.||+++| +++|||||++|++|||||+|+.+ .+.|++||+.|+.|||
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 578999999999999999999999999 79999999999999999999853 6899999999999999
Q ss_pred eCC-ceeEe
Q psy7251 80 VDN-FKVNQ 87 (151)
Q Consensus 80 ~ed-~kVRR 87 (151)
++| .+|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 998 58997
No 14
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.92 E-value=9.6e-27 Score=156.98 Aligned_cols=58 Identities=45% Similarity=0.791 Sum_probs=52.9
Q ss_pred hhcccceecCCCCCCcchHHhhhcCC--CCcEehHhhhccccccccc-CCHHHHHHHHhcC
Q psy7251 17 HYMPFEYYFSADNLVRDIFLRKKMDP--EGFLPVTLIASFSRVRSLT-TDINRVLLAIQKS 74 (151)
Q Consensus 17 i~kQvEfYFSd~NL~~D~fLr~~m~~--~G~Vpl~~i~~F~rvk~lt-~d~~~I~~Al~~S 74 (151)
|++||||||||+||++|+||+++|+. ||||||++|++|+|||+++ .|.+.|.+||+.|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 68999999999999999999999965 9999999999999999999 8999999999987
No 15
>KOG1855|consensus
Probab=99.91 E-value=2.6e-25 Score=196.08 Aligned_cols=115 Identities=31% Similarity=0.480 Sum_probs=96.6
Q ss_pred hhhhhcccceecCCCCCCcchHHhhhc--CCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEeccc
Q psy7251 14 SFSHYMPFEYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQIIV 90 (151)
Q Consensus 14 ~~~i~kQvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRRk~p 90 (151)
..+|.+||||||||+||.+|.||.++| +.+|||||++|++|+|||+||.|+.+|..||+.|.+|+|++| .||||..|
T Consensus 141 ~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisP 220 (484)
T KOG1855|consen 141 AAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISP 220 (484)
T ss_pred HHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCC
Confidence 468999999999999999999999999 799999999999999999999999999999999999999998 58999999
Q ss_pred cCCCCCC-ccCCCCCCCCCCCCCchhhHHHHHhhhcccC
Q psy7251 91 IADTNGK-QRSDYLPNNNHLHSNNNKRLTSLRSRLTLLS 128 (151)
Q Consensus 91 l~~~p~~-w~~~~lp~~~~~~~~~~~~i~~~~~~f~~v~ 128 (151)
|++.+.. -+...+-..+-......+++..+++.++.++
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~Ik 259 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIK 259 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhccccee
Confidence 9986654 3333332222222334488989988887665
No 16
>KOG2591|consensus
Probab=99.77 E-value=9.5e-20 Score=165.10 Aligned_cols=97 Identities=24% Similarity=0.452 Sum_probs=88.4
Q ss_pred CCCcccchhhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-cee
Q psy7251 7 LPVTLITSFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKV 85 (151)
Q Consensus 7 ~P~~~~~~~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kV 85 (151)
.|.+.+.+.-+++|+|||||.+||..|.||..+||+|.||||.++++|+.|++|++|+++|.++|+.|+.|||++. .||
T Consensus 90 ~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekgekV 169 (684)
T KOG2591|consen 90 PPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKGEKV 169 (684)
T ss_pred CccchhHHHHHHHHHHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCcccc
Confidence 4455566778899999999999999999999999999999999999999999999999999999999999999986 477
Q ss_pred -----EeccccCCCCCCccCCCC
Q psy7251 86 -----NQIIVIADTNGKQRSDYL 103 (151)
Q Consensus 86 -----RRk~pl~~~p~~w~~~~l 103 (151)
|+...|+|.|+..|+.++
T Consensus 170 rp~~kRcIvilREIpettp~e~V 192 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVV 192 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHH
Confidence 678899999999998765
No 17
>KOG4213|consensus
Probab=99.77 E-value=2.4e-19 Score=144.04 Aligned_cols=99 Identities=30% Similarity=0.500 Sum_probs=89.6
Q ss_pred hhhhcccceecCCCCCCcchHHhhhc--CCCCcEehHhhhcccccccccCCHHHHHHHHhcCC--cEEEeCC-ceeEecc
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSD--KLELVDN-FKVNQII 89 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~--~LEv~ed-~kVRRk~ 89 (151)
++|++||||||+|.||+||.||++++ ..+|||||.+++.|||+.++++|.+.|+.|++.|. ++++++| +++||-.
T Consensus 15 ~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k~rr~~ 94 (205)
T KOG4213|consen 15 AKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTKIRRSP 94 (205)
T ss_pred HhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhhhhcCc
Confidence 57999999999999999999999999 48999999999999999999999999999999875 8899998 6899754
Q ss_pred ccCCCCCCccCCCCCCCCCCCCCchhhHHHHHhhhcccCC
Q psy7251 90 VIADTNGKQRSDYLPNNNHLHSNNNKRLTSLRSRLTLLSP 129 (151)
Q Consensus 90 pl~~~p~~w~~~~lp~~~~~~~~~~~~i~~~~~~f~~v~P 129 (151)
..++|+.+. +..+....|-.|..|
T Consensus 95 ----------skplpEvt~------e~~~~~~~r~v~~K~ 118 (205)
T KOG4213|consen 95 ----------SKPLPEVTD------EYKEGIKERTVYKKI 118 (205)
T ss_pred ----------CCCCccccH------HHHHHHHHhhhhccC
Confidence 667888777 888888899998887
No 18
>KOG2590|consensus
Probab=99.15 E-value=1.6e-11 Score=109.96 Aligned_cols=63 Identities=41% Similarity=0.636 Sum_probs=57.9
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN 82 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed 82 (151)
+.+.+|||||||.+||++|.|++++| |+|.+|++|+||..++.|+++|.+||+.|..||+..+
T Consensus 302 ~~~~~~ie~~FSeE~~~~d~~n~~k~-----~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d 364 (448)
T KOG2590|consen 302 AFIQEPIEFYFSEENLQRDRFNREKF-----VPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD 364 (448)
T ss_pred cccccccccccchHHHhhhhhhhccc-----chhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch
Confidence 46789999999999999999998755 7799999999999999999999999999999998655
No 19
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.1e-11 Score=107.71 Aligned_cols=60 Identities=40% Similarity=0.670 Sum_probs=56.8
Q ss_pred hhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcC
Q psy7251 15 FSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKS 74 (151)
Q Consensus 15 ~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S 74 (151)
..+..|||||||.+||+.|.|||++|+.+||||+++|..|.|..++..|.+++..||+.+
T Consensus 272 ~a~k~QiEyYFseenl~~d~~lrkk~~kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 272 MAKKEQIEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhHHhhhHhhhhHHhhhhhhHHHhhhhhcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999999999877
No 20
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.4e-10 Score=102.52 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=67.6
Q ss_pred hhhcccceecC-----CCCCCcchHHhhhc----CCCCcEehHhhhcccccccccCCHHHHHHHHhcC---CcEEEeCCc
Q psy7251 16 SHYMPFEYYFS-----ADNLVRDIFLRKKM----DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKS---DKLELVDNF 83 (151)
Q Consensus 16 ~i~kQvEfYFS-----d~NL~~D~fLr~~m----~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S---~~LEv~ed~ 83 (151)
.+..|+||||| |.|.++|+||+..- ..+|||||..+++|+||+..+...+.+..|++.| .+++++.++
T Consensus 74 w~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssg 153 (438)
T COG5193 74 WTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSG 153 (438)
T ss_pred ccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeecccc
Confidence 37889999999 99999999999865 3699999999999999999999999999999999 688998764
Q ss_pred -eeEeccccC
Q psy7251 84 -KVNQIIVIA 92 (151)
Q Consensus 84 -kVRRk~pl~ 92 (151)
++||+.++-
T Consensus 154 sn~~r~~k~~ 163 (438)
T COG5193 154 SNKNRTEKLI 163 (438)
T ss_pred ccccccchhh
Confidence 677765443
No 21
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=95.36 E-value=0.015 Score=56.97 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=44.0
Q ss_pred CCCCcEehHhhhcccccccccCCHHHHHHHHhc-CCcEEEeCCc-eeEecc
Q psy7251 41 DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQK-SDKLELVDNF-KVNQII 89 (151)
Q Consensus 41 ~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~-S~~LEv~ed~-kVRRk~ 89 (151)
|.+|||-|.+||+.-++--+....+.|..|+.+ |..+||+.|| |||=|-
T Consensus 474 DaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 474 DAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred ccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 788999999999999999999999999999975 9999999875 898654
No 22
>KOG2590|consensus
Probab=93.12 E-value=0.038 Score=50.29 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=74.2
Q ss_pred hhhcccceecCCCCCCcchHHhhhcCCCC---cEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCCceeEeccccC
Q psy7251 16 SHYMPFEYYFSADNLVRDIFLRKKMDPEG---FLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDNFKVNQIIVIA 92 (151)
Q Consensus 16 ~i~kQvEfYFSd~NL~~D~fLr~~m~~~G---~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed~kVRRk~pl~ 92 (151)
.-.++.+|||+-.++.+|.|+...++..| +.+++.+..|.++...+++...+..+++.|...+... .+.|++.
T Consensus 102 ~~~k~~s~~~~~~~~~~~~~~~~k~~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa~~~~~~-~~~~~~~--- 177 (448)
T KOG2590|consen 102 KSDKKKSWPASKPFTPRDSFKGSKPTNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSASSNPVP-NNSRAKP--- 177 (448)
T ss_pred cccccccCcccCCCCccccccCCCccccCCCccCCCccccccccccCcccccccccCcCCCCCcCCcCc-ccccccc---
Confidence 34579999999999999999999998777 8999999999999999999999999999866555443 4788776
Q ss_pred CCCCCccCCCCCCCCC
Q psy7251 93 DTNGKQRSDYLPNNNH 108 (151)
Q Consensus 93 ~~p~~w~~~~lp~~~~ 108 (151)
.+++|+...-+..+.
T Consensus 178 -~~qr~~~~~~~~~~~ 192 (448)
T KOG2590|consen 178 -LNQRWPDSSPSSGGV 192 (448)
T ss_pred -ccccCCCCCCCCcCc
Confidence 778898877665544
No 23
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=92.36 E-value=0.2 Score=40.34 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=33.5
Q ss_pred cCCCCcEehHhhhcccccccccCCHHHHHHHHhcCC--cEEEe---CC-ceeEecc
Q psy7251 40 MDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSD--KLELV---DN-FKVNQII 89 (151)
Q Consensus 40 m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~--~LEv~---ed-~kVRRk~ 89 (151)
|+++|||+|+.|+...+.+....+.+.|.+.++.++ -.|+. ++ .+||...
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 589999999999999999887778899999998876 55666 22 5898764
No 24
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=91.56 E-value=0.32 Score=39.10 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=37.1
Q ss_pred cCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCc--EEEeCCceeEecc
Q psy7251 40 MDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDK--LELVDNFKVNQII 89 (151)
Q Consensus 40 m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~--LEv~ed~kVRRk~ 89 (151)
||++|||+|+.++...+.+....+.+.|.+.++.++. .|++ +++||...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~-~~~IRA~q 78 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS-GDRIRARQ 78 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec-CceEEecc
Confidence 5899999999999887644333478899999988774 4554 56888764
No 25
>KOG2278|consensus
Probab=90.63 E-value=0.3 Score=40.02 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=33.3
Q ss_pred hcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCC
Q psy7251 39 KMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSD 75 (151)
Q Consensus 39 ~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~ 75 (151)
+|++|||||+..+++.|+.+-..-.++.|.++++.-+
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 4589999999999999999999878999999998765
No 26
>PTZ00315 2'-phosphotransferase; Provisional
Probab=74.83 E-value=5.2 Score=37.77 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=39.0
Q ss_pred cCCCCcEehHhhhcccccccccCCHHHHHHHHhcCC--cEEEe---CCc--eeEecc
Q psy7251 40 MDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSD--KLELV---DNF--KVNQII 89 (151)
Q Consensus 40 m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~--~LEv~---ed~--kVRRk~ 89 (151)
||++|||+|+.|+.-.+.+....+.+.|.+.++.++ -.+++ +++ +||...
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 489999999999998887765567899999999876 56776 233 588654
No 27
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=49.99 E-value=22 Score=29.65 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=36.9
Q ss_pred cCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCc--EEEeCCceeEecc
Q psy7251 40 MDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDK--LELVDNFKVNQII 89 (151)
Q Consensus 40 m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~--LEv~ed~kVRRk~ 89 (151)
+|.+||++|+.++.-.|-+---.+.+.|..+++.+++ .++++ ++||.+.
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K~Rf~l~~-~~IRA~y 104 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDKGRFELKE-GKIRARY 104 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCCceeEecc-cceeecc
Confidence 4899999999988876554333467888888888764 66665 5899876
No 28
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=20.10 E-value=44 Score=20.55 Aligned_cols=10 Identities=60% Similarity=0.836 Sum_probs=7.8
Q ss_pred ccceecCCCC
Q psy7251 20 PFEYYFSADN 29 (151)
Q Consensus 20 QvEfYFSd~N 29 (151)
-+|||||.+-
T Consensus 15 ~Vey~FsAdp 24 (38)
T PF10736_consen 15 SVEYHFSADP 24 (38)
T ss_pred eEEEEEecCc
Confidence 5899999753
Done!