Query psy7251
Match_columns 151
No_of_seqs 139 out of 604
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 21:54:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s29_A LA protein; winged heli 100.0 1.1E-34 3.9E-39 208.8 4.7 87 6-92 3-92 (92)
2 2cqk_A C-MPL binding protein; 100.0 5.3E-33 1.8E-37 203.3 3.6 77 13-89 14-91 (101)
3 2voo_A Lupus LA protein; RNA-b 99.9 8.6E-26 2.9E-30 177.4 6.3 79 11-89 10-92 (193)
4 3htx_A HEN1; HEN1, small RNA m 92.7 0.041 1.4E-06 52.7 2.0 91 3-93 97-208 (950)
5 1wfx_A Probable RNA 2'-phospho 90.7 0.36 1.2E-05 37.8 5.2 48 40-89 24-75 (186)
6 2k9l_A RNA polymerase sigma fa 32.2 21 0.0007 23.4 1.7 54 14-72 15-70 (76)
7 2h2m_A Protein MURR1, COMM dom 18.9 38 0.0013 24.5 1.0 39 19-61 20-59 (108)
8 2kzv_A Uncharacterized protein 14.2 1.2E+02 0.004 20.8 2.6 41 41-81 22-67 (92)
9 3f2g_A Alkylmercury lyase; MER 13.4 2.3E+02 0.0078 22.4 4.5 53 38-96 29-81 (220)
10 2jo7_A Glycosylphosphatidylino 13.4 56 0.0019 26.1 0.8 41 32-72 15-59 (224)
No 1
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=100.00 E-value=1.1e-34 Score=208.83 Aligned_cols=87 Identities=36% Similarity=0.573 Sum_probs=81.7
Q ss_pred CCCCcccchhhhhcccceecCCCCCCcchHHhhhc--CCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-
Q psy7251 6 FLPVTLITSFSHYMPFEYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN- 82 (151)
Q Consensus 6 ~~P~~~~~~~~i~kQvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed- 82 (151)
+.|.+++...+|++||||||||+||++|.||+++| ++||||||++|++|||||+++.|.+.|++||+.|+.|||++|
T Consensus 3 ~~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg 82 (92)
T 1s29_A 3 HMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDG 82 (92)
T ss_dssp TSCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTS
T ss_pred CCCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCC
Confidence 55777777889999999999999999999999999 799999999999999999999999999999999999999987
Q ss_pred ceeEeccccC
Q psy7251 83 FKVNQIIVIA 92 (151)
Q Consensus 83 ~kVRRk~pl~ 92 (151)
.+|||+.|||
T Consensus 83 ~~VRR~~PlP 92 (92)
T 1s29_A 83 LMVRRRDPLP 92 (92)
T ss_dssp SEEEESSCCC
T ss_pred CEEeCCCCCC
Confidence 5999999876
No 2
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.97 E-value=5.3e-33 Score=203.28 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=73.8
Q ss_pred chhhhhcccceecCCCCCCcchHHhhhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCC-ceeEecc
Q psy7251 13 TSFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDN-FKVNQII 89 (151)
Q Consensus 13 ~~~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed-~kVRRk~ 89 (151)
..++|++||||||||+||++|.||+++|++||||||++|++|||||+|+.|.+.|++||+.|+.|||++| .+|||+.
T Consensus 14 l~~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kVRr~~ 91 (101)
T 2cqk_A 14 LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH 91 (101)
T ss_dssp HHHHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEECC
T ss_pred HHHHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCeeeeCC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999987 5999986
No 3
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.92 E-value=8.6e-26 Score=177.36 Aligned_cols=79 Identities=32% Similarity=0.566 Sum_probs=73.5
Q ss_pred ccchhhhhcccceecCCCCCCcchHHhhhcC-CCCcEehHhhhcccccccccCCHHHHHHHHhcC--CcEEEeCC-ceeE
Q psy7251 11 LITSFSHYMPFEYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKS--DKLELVDN-FKVN 86 (151)
Q Consensus 11 ~~~~~~i~kQvEfYFSd~NL~~D~fLr~~m~-~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S--~~LEv~ed-~kVR 86 (151)
.....+|++||||||||+||++|.||+++|+ ++|||||++|++|+|||+++.|.+.|..|++.| ..|+++++ .+||
T Consensus 10 ~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vr 89 (193)
T 2voo_A 10 AALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIR 89 (193)
T ss_dssp HHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEE
T ss_pred HHHHHHHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEE
Confidence 4456899999999999999999999999996 699999999999999999999999999999999 99999987 6899
Q ss_pred ecc
Q psy7251 87 QII 89 (151)
Q Consensus 87 Rk~ 89 (151)
|+.
T Consensus 90 R~~ 92 (193)
T 2voo_A 90 RSP 92 (193)
T ss_dssp ECT
T ss_pred ecc
Confidence 873
No 4
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=92.69 E-value=0.041 Score=52.71 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCCCCCcccchhhhhcccceecCCCCCCcchHHhhhc--------CCCCcEehHhhhcc-cccccccC--------C--
Q psy7251 3 PEGFLPVTLITSFSHYMPFEYYFSADNLVRDIFLRKKM--------DPEGFLPVTLIASF-SRVRSLTT--------D-- 63 (151)
Q Consensus 3 ~~g~~P~~~~~~~~i~kQvEfYFSd~NL~~D~fLr~~m--------~~~G~Vpl~~i~~F-~rvk~lt~--------d-- 63 (151)
|.+.-|.+.+.-+.|..+|+|.|||+=|.-.+=|..++ +.-|.||+.+|+.+ -|+-.++. |
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~ 176 (950)
T 3htx_A 97 PQNDDLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPF 176 (950)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTH
T ss_pred ccccCcchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChH
Confidence 34444555666678999999999999888888777766 35589999999998 45544442 1
Q ss_pred --HHHHHHHHhcCCcEEEeCCceeEeccccCC
Q psy7251 64 --INRVLLAIQKSDKLELVDNFKVNQIIVIAD 93 (151)
Q Consensus 64 --~~~I~~Al~~S~~LEv~ed~kVRRk~pl~~ 93 (151)
++.|.+|...++-+-+++++-|||+.|.+.
T Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 208 (950)
T 3htx_A 177 LAISYVMKAAAKLADYIVASPHGLRRKNAYPS 208 (950)
T ss_dssp HHHHHHHHHHHHCCSSEEEETTEEEESSCCCH
T ss_pred HHHHHHHHHhhcCCCcEEeCCcccccCCCCCH
Confidence 357888888887666887669999998775
No 5
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=90.67 E-value=0.36 Score=37.83 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=35.2
Q ss_pred cCCCCcEehHhhhcccccc--cccCCHHHHHHHHhcCC--cEEEeCCceeEecc
Q psy7251 40 MDPEGFLPVTLIASFSRVR--SLTTDINRVLLAIQKSD--KLELVDNFKVNQII 89 (151)
Q Consensus 40 m~~~G~Vpl~~i~~F~rvk--~lt~d~~~I~~Al~~S~--~LEv~ed~kVRRk~ 89 (151)
||++|||+|+.++. .+.+ ....+.+.|.++++.++ -.+++++ +||...
T Consensus 24 ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~-~IRA~q 75 (186)
T 1wfx_A 24 LTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRNG-EIRARY 75 (186)
T ss_dssp CCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEETT-EEEESS
T ss_pred cCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeecc-EEEecc
Confidence 58999999999998 3333 23346788888888765 5677655 888754
No 6
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=32.21 E-value=21 Score=23.38 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=35.5
Q ss_pred hhhhhcccceecCCCCCCcchHHhhhcCCCCcE--ehHhhhcccccccccCCHHHHHHHHh
Q psy7251 14 SFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFL--PVTLIASFSRVRSLTTDINRVLLAIQ 72 (151)
Q Consensus 14 ~~~i~kQvEfYFSd~NL~~D~fLr~~m~~~G~V--pl~~i~~F~rvk~lt~d~~~I~~Al~ 72 (151)
.+.+..|+...||+.-..==.||-..+|.+||. ++..|+.- +..+.+.|.++++
T Consensus 15 ~ehL~~Ql~~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~-----l~~~~~eve~vL~ 70 (76)
T 2k9l_A 15 LEELQQNIKLELEGKEQELALELLNYLNEKGFLSKSVEEISDV-----LRCSVEELEKVRQ 70 (76)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHH-----HTSCHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH-----cCCCHHHHHHHHH
Confidence 567889998445554433345777778999995 67777642 2356666666665
No 7
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=18.85 E-value=38 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=29.4
Q ss_pred cccceecCCCCCCcchHHhhhcCCCCcEehHhhhcc-ccccccc
Q psy7251 19 MPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASF-SRVRSLT 61 (151)
Q Consensus 19 kQvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F-~rvk~lt 61 (151)
.|=+|| .++-+ .|.+|++++=++ |+...+..+ +||+.+.
T Consensus 20 aq~~y~-~~~~I-tee~L~~~lypd--vt~eef~~~~~K~~~li 59 (108)
T 2h2m_A 20 AQDTFH-GYPGI-TEELLRSQLYPE--VPPEEFRPFLAKMRGIL 59 (108)
T ss_dssp CCCSSS-CCSSC-CHHHHHHHHCSS--SCSSTHHHHHTTTSTTH
T ss_pred HHHHHc-CCccc-cHHHHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence 455655 88877 999999999666 888877766 6777663
No 8
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=14.17 E-value=1.2e+02 Score=20.77 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCCCcEehHhhhcc-ccc-ccccC---CHHHHHHHHhcCCcEEEeC
Q psy7251 41 DPEGFLPVTLIASF-SRV-RSLTT---DINRVLLAIQKSDKLELVD 81 (151)
Q Consensus 41 ~~~G~Vpl~~i~~F-~rv-k~lt~---d~~~I~~Al~~S~~LEv~e 81 (151)
+.+||+.|+.|-++ +|. -.+.. ....+.+-++.++.+|+.+
T Consensus 22 dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~~~~~fe~~~ 67 (92)
T 2kzv_A 22 RDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQE 67 (92)
T ss_dssp TTTSSCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHHTCTTEEEEE
T ss_pred CCCCcEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhcCcEEEEE
Confidence 67999999998876 221 11211 2345666667788999964
No 9
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=13.41 E-value=2.3e+02 Score=22.40 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=36.1
Q ss_pred hhcCCCCcEehHhhhcccccccccCCHHHHHHHHhcCCcEEEeCCceeEeccccCCCCC
Q psy7251 38 KKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVDNFKVNQIIVIADTNG 96 (151)
Q Consensus 38 ~~m~~~G~Vpl~~i~~F~rvk~lt~d~~~I~~Al~~S~~LEv~ed~kVRRk~pl~~~p~ 96 (151)
+.+-...-|+++.++ +.+..+.+.+.++|..-+.++++++++|= -.||...|.
T Consensus 29 r~la~Grpv~~~~LA-----~~~g~~~~~v~~~L~~l~~~~~D~~G~Iv-gyp~S~~pT 81 (220)
T 3f2g_A 29 RELAKGRPVSRTTLA-----GILDWPAERVAAVLEQATSTEYDKDGNII-GYGLTLRET 81 (220)
T ss_dssp HHHTTTSCBCHHHHH-----HHHTCCHHHHHHHHHHCTTCEECTTSCEE-ESSEESSCC
T ss_pred HHHhcCCCCCHHHHH-----HHhCcCHHHHHHHHHhCCcEEECCCCCEE-EecCCCCCC
Confidence 333433346777666 35566889999999999999999887872 245554444
No 10
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=13.35 E-value=56 Score=26.07 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=33.8
Q ss_pred cchHHhhhcCCCCcEehHhhhccccccc----ccCCHHHHHHHHh
Q psy7251 32 RDIFLRKKMDPEGFLPVTLIASFSRVRS----LTTDINRVLLAIQ 72 (151)
Q Consensus 32 ~D~fLr~~m~~~G~Vpl~~i~~F~rvk~----lt~d~~~I~~Al~ 72 (151)
|.+||...|+++|-.-|-.+..|=|+-. +..|-..|.+|=+
T Consensus 15 RE~~Ls~Ii~sdGp~tIlQLid~LRiidtDlLlkVD~~~V~kAG~ 59 (224)
T 2jo7_A 15 REAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGK 59 (224)
T ss_dssp HHHHHHHHHHCCSCCCTTHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHccCCCeeHHHHHHHHHHhccchhhccCHHHHHHHHH
Confidence 6789999999999999999999999986 3467777666644
Done!