RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7251
(151 letters)
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Length = 101
Score = 80.7 bits (199), Expect = 7e-21
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVD 81
E+ FS +NL +D++L +MD + F+P+ +A+ ++ LTTD + +L ++ S +++ +
Sbjct: 23 EFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDE 82
Query: 82 N 82
Sbjct: 83 K 83
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding,
RNA binding protein; 1.60A {Trypanosoma brucei} SCOP:
a.4.5.46
Length = 92
Score = 77.1 bits (190), Expect = 1e-19
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 22 EYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
E+YFS N+ RDIFL+ KM + EGF+ + + +F RV S+TTD+ V+ AI+ S+KL L
Sbjct: 19 EFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVL 78
Query: 80 V-DNFKV 85
D V
Sbjct: 79 SEDGLMV 85
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 63.3 bits (153), Expect = 2e-13
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 22 EYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLE 78
EYYF NL RD FL++++ EG++P+ ++ F+R+ LTTD N ++ A+ KS
Sbjct: 21 EYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAEL 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 3e-04
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 14 SFSHYMPFEYYFSADNLV--RDIFLRKKM--DPEGFLPVTLIA-SFSRVR-SLTTDINRV 67
S + M E S +V R + ++ + D G +IA + RV S + + +
Sbjct: 1772 SLADVMSIE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 68 L---LAIQKSDKLELVDNFKV-NQIIVIADTNGKQRS-DYLPNN-NHLHSNNNKRLTSLR 121
+ + + +E+V N+ V NQ V A G R+ D + N N + + L+
Sbjct: 1829 VVERVGKRTGWLVEIV-NYNVENQQYVAA---GDLRALDTVTNVLNFIKLQKID-IIELQ 1883
Query: 122 SRLTL 126
L+L
Sbjct: 1884 KSLSL 1888
Score = 35.4 bits (81), Expect = 0.005
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 6 FLPVTLITSF-SHYM-PFEYYFSADNLVRDI-FLRKKMDPEGFLPVTLIASFSRVRSLTT 62
FLPV + F SH + P + D + ++ F K + +PV S +R L+
Sbjct: 420 FLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ----IPVYDTFDGSDLRVLSG 473
Query: 63 DINRVLLAIQKSDKL--ELVDNFKVNQIIV 90
I+ ++ + E FK I+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 35.0 bits (80), Expect = 0.006
Identities = 28/207 (13%), Positives = 53/207 (25%), Gaps = 106/207 (51%)
Query: 3 PEGFL---PVTL----ITSFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFS 55
+ +L P++ + +HY+ + + GF P L S
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYV--------------VTAKLL----GFTPGEL---RS 265
Query: 56 RVRSLTTDINRVLLA--IQKSDK-----------LEL----------------------- 79
++ T ++ A I ++D + +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 80 ---------------VDNFKVNQII-VIADTNGKQRSDYLPNNNHLHSNNNKRLTSLRSR 123
+ N Q+ + TN +LP + SL
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS-----HLPAGKQVE-------ISLV-- 371
Query: 124 LTLLSPNGQRMMI------SLLLLALT 144
NG + ++ SL L LT
Sbjct: 372 ------NGAKNLVVSGPPQSLYGLNLT 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.017
Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 37/133 (27%)
Query: 10 TLITSFSHYMPFEYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLL 69
L+T+ R + + ++L +LT D + LL
Sbjct: 268 ILLTT-----------------RFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLL 307
Query: 70 AI---QKSDKL--ELVDNFKVN--QIIVIADT--NGKQRSDYLPNNNHLHSNNNKRLTSL 120
+ L E++ N ++ +IA++ +G D H N +K T +
Sbjct: 308 LKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDNW-----KHVNCDKLTTII 359
Query: 121 RSRLTLLSPNGQR 133
S L +L P R
Sbjct: 360 ESSLNVLEPAEYR 372
Score = 32.1 bits (72), Expect = 0.064
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 53/160 (33%)
Query: 19 MPFEYYFSA-DNLVRDIFLRKKMDPEGFLPVTLIASFSRVR----SLTTDINRVL----- 68
M Y D L D + K + V+ + + ++R L N ++
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 69 -----LAIQ--KSDKLELVDNFKV------------------NQIIVIADTNGKQRSDYL 103
+A+ S K++ +FK+ +++ D N RSD+
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 104 PNNNHLHSNNNKRLTSLRSRLT--LLSPNGQRMMISLLLL 141
N R+ S+++ L L S + LL+L
Sbjct: 221 SNIKL-------RIHSIQAELRRLLKSKPYEN---CLLVL 250
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast,
nucleotidyltransferase; NMR {Saccharomyces cerevisiae}
SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H
1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H*
1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H
1y1y_H ...
Length = 146
Score = 30.7 bits (69), Expect = 0.10
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 27 ADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRS---LTTDINRVLLAIQKSDKLELV 80
++ L DIF ++DP + V I + S + LT DIN L + D L +
Sbjct: 2 SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVT 58
>3h0g_H DNA-directed RNA polymerases I, II, and III subunit rpabc3;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 125
Score = 30.2 bits (68), Expect = 0.13
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 26 SADNLVRDIFLRKKMDPEGFLPVTLIA--SFSRVRSLTTDINRVLLAIQKSDKLELV 80
S L+ +IF +D + + V+ I S +LT DIN + ++K L
Sbjct: 2 SESVLLDEIFTVTSVDKQKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.19
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 115 KRLTSLRSRLTLLSPNGQRMMISLLLLALTTQTI 148
+ L L++ L L + + S LA+ T+
Sbjct: 20 QALKKLQASLKLYADD------SAPALAIKA-TM 46
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 27.9 bits (62), Expect = 1.3
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 21 FEYYFSADNLVRDIFLRKKMDPEGFLPVTLIAS---FSRVRSLTTDINRVLLAIQKSDKL 77
E +F D + +++ F L+ + T I +L
Sbjct: 126 VELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEILEKSWLPQNC 185
Query: 78 ELVDNFKV-------NQIIVIAD 93
LVD K+ + IV+AD
Sbjct: 186 TLVD-MKIEFGVDVTTKEIVLAD 207
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function
from thermoplasma acidophi structural genomics,PSI,
MCSG; 2.70A {Thermoplasma acidophilum}
Length = 252
Score = 27.4 bits (60), Expect = 1.6
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 1 MDPEGFLPVTLITSFSHYMPFEYYFSADNLV 31
+ + PV + PF Y + N V
Sbjct: 59 LISQHIPPVAVFVGGKLRHPFRIYANNSNTV 89
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 26.8 bits (60), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 79 LV--DNFKVNQ-IIVIADTNGKQRSDYL 103
LV D F+ + I+V+A TN R D L
Sbjct: 158 LVEMDGFEKDTAIVVMAATN---RPDIL 182
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 26.8 bits (60), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 79 LV--DNFKVNQ-IIVIADTNGKQRSDYL 103
LV D F + IIV+A TN R D L
Sbjct: 143 LVEMDGFDSKEGIIVMAATN---RPDIL 167
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 25.6 bits (55), Expect = 8.7
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 35 FLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVL 68
++R+ + +G + + V + + R +
Sbjct: 61 YMREWLAQQGMVKTGECPAADSVYAYANSLQRTV 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.384
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,210,425
Number of extensions: 122795
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 21
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)