RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7251
         (151 letters)



>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 79.7 bits (197), Expect = 4e-21
 Identities = 18/61 (29%), Positives = 39/61 (63%)

Query: 22 EYYFSADNLVRDIFLRKKMDPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELVD 81
          E+ FS +NL +D++L  +MD + F+P+  +A+   ++ LTTD + +L  ++ S  +++ +
Sbjct: 16 EFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDE 75

Query: 82 N 82
           
Sbjct: 76 K 76


>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
          {Trypanosoma brucei [TaxId: 5691]}
          Length = 92

 Score = 74.4 bits (183), Expect = 4e-19
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 22 EYYFSADNLVRDIFLRKKM--DPEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLEL 79
          E+YFS  N+ RDIFL+ KM  + EGF+ +  + +F RV S+TTD+  V+ AI+ S+KL L
Sbjct: 19 EFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVL 78

Query: 80 VDN 82
           ++
Sbjct: 79 SED 81


>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 73.3 bits (180), Expect = 2e-18
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 22 EYYFSADNLVRDIFLRKKMD-PEGFLPVTLIASFSRVRSLTTDINRVLLAIQKSDKLELV 80
          EYYF   NL RD FL++++   EG++P+ ++  F+R+  LTTD N ++ A+ KS    + 
Sbjct: 18 EYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELME 77

Query: 81 DN 82
           +
Sbjct: 78 IS 79


>d1twfh_ b.40.4.8 (H:) RNA polymerase subunit RBP8 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 145

 Score = 25.8 bits (57), Expect = 1.7
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 27 ADNLVRDIFLRKKMDPEGFLPVTLIASFSRVR---SLTTDINRVLLAIQKSDKLELV 80
          ++ L  DIF   ++DP  +  V  I + S  +    LT DIN  L  +   D L + 
Sbjct: 1  SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVT 57


>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
           {Vibrio cholerae [TaxId: 666]}
          Length = 340

 Score = 24.2 bits (52), Expect = 7.3
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 19/94 (20%)

Query: 27  ADNLVRDIFLRKKMDPEGFLPVTLIASF---------SRVRSLTTDINRVLLAIQKSDKL 77
            D  + DI         GF PV     F           VR +  ++NR+      +   
Sbjct: 71  LDKWIDDI-------VSGFQPVAERCLFIMAHPQATVRHVRFIEQNLNRLFDDKPHTPST 123

Query: 78  ELVDNFKVNQIIVIADTNGKQRSDYLPNNNHLHS 111
           EL     +  ++     N  + S +  +   LH 
Sbjct: 124 ELAIADNLKVLLRQFFANTDEHSRWHLD---LHC 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,746
Number of extensions: 22662
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 9
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)