BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7253
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 41/50 (82%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DLIAIPDF GAMENWGLITYRETS+L+D + +SAS WV V+AHELA
Sbjct: 324 DLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELA 373
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 41/50 (82%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DLIAIPDF GAMENWGLITYRETS+L+D + +SAS WV V+AHELA
Sbjct: 324 DLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELA 373
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+AHELA
Sbjct: 276 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELA 325
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+AHELA
Sbjct: 275 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELA 324
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+AHELA
Sbjct: 319 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELA 368
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 43 DDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DL AIPDF +GAMENWGL TYRE+++L+D +++SAS + + VAHELA
Sbjct: 312 QDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELA 362
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 43 DDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DL AIPDF +GAMENWGL TYRE+++L+D +++SAS + + VAHELA
Sbjct: 261 QDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELA 311
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 43 DDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DL AIPDF +GAMENWGL TYRE+++L+D +++SAS + + VAHELA
Sbjct: 270 QDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELA 320
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+AH+LA
Sbjct: 275 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLA 324
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D I +PDF GAMENWGL+TYRE S+L+D +S+S V V+AHELA
Sbjct: 278 DQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELA 327
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 45 LIAIPDFGTGAMENWGLITYRETSILYDEQETSA-SGHNWVAVVVAHELA 93
LI++P+FG GAMENWG IT+RE I D E SA + A V+AHE+A
Sbjct: 221 LISVPEFGAGAMENWGAITFRE--IYMDIAENSAVTVKRNSATVIAHEIA 268
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 45 LIAIPDFGTGAMENWGLITYRETSILYDEQETSA-SGHNWVAVVVAHELA 93
LI++P+FG GAMENWG IT+RE I D E SA + A V+AHE+A
Sbjct: 221 LISVPEFGAGAMENWGAITFRE--IYMDIAENSAVTVKRNSANVIAHEIA 268
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
+L+A+ DF GAMEN GL + S+L ++ + + + VV HE
Sbjct: 256 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHE 303
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
+L+A+ DF GAMEN GL + S+L ++ + + + VV HE
Sbjct: 256 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHE 303
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
+L+A+ DF GAMEN GL + S+L ++ + + + VV HE
Sbjct: 255 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHE 302
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
+L+A+ DF GAMEN GL + S+L ++ + + + VV HE
Sbjct: 255 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHE 302
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 45 LIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
++A+ DF GA EN GL + +L D + + + + VV HE
Sbjct: 248 VVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHE 294
>pdb|2PV0|B Chain B, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|A Chain A, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|C Chain C, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PVC|B Chain B, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|A Chain A, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|C Chain C, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
Length = 386
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 46 IAIPDFGTGAMEN---------------WGLITYRETSILYDEQETSASGHNWVAVVVAH 90
+ IPD G+++N W L++ E S+L +++S W +V +
Sbjct: 307 VTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKN 366
Query: 91 ELAPIRHNAK 100
P+R K
Sbjct: 367 CFLPLREYFK 376
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 23 DVNSVPFLDSWARPAVRDCLDDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHN 82
+ N + F+D+ A P D I++ D+ A+E W L+ R +L + SG
Sbjct: 69 ESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERW-LVDKRGCIVL-----PTGSGKT 122
Query: 83 WVAVVVAHELA 93
VA+ +EL+
Sbjct: 123 HVAMAAINELS 133
>pdb|2QRV|B Chain B, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|C Chain C, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|F Chain F, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|G Chain G, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
Length = 230
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 46 IAIPDFGTGAMEN---------------WGLITYRETSILYDEQETSASGHNWVAVVVAH 90
+ IPD G+++N W L++ E S+L +++S W +V +
Sbjct: 151 VTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKN 210
Query: 91 ELAPIRHNAK 100
P+R K
Sbjct: 211 CFLPLREYFK 220
>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
Fulgidus Xpb
Length = 237
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 23 DVNSVPFLDSWARPAVRDCLDDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHN 82
+ N + F+D+ A P D I++ D+ A+E W L+ R +L + SG
Sbjct: 69 ESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERW-LVDKRGCIVL-----PTGSGKT 122
Query: 83 WVAVVVAHELA 93
VA+ +EL+
Sbjct: 123 HVAMAAINELS 133
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 10 EPLIKVSVVGSAKDVNSVPFLDSWARPAVRD 40
E ++ +S V S D++S+PF SW P+V +
Sbjct: 216 ETILVLSGVSSLDDIDSMPFRPSWIYPSVAE 246
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 1 MGLIHVSDR--EPLIKVSVVGSAKD---VNSVPFLDSWARPAVRDCLDDLIAIPDFGTGA 55
GL+H D+ L+ +V D V+S P+L +W RP +GTG
Sbjct: 457 QGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPE------------SWGTGD 504
Query: 56 MENWGL 61
NWG+
Sbjct: 505 SHNWGV 510
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 1 MGLIHVSDR--EPLIKVSVVGSAKD---VNSVPFLDSWARPAVRDCLDDLIAIPDFGTGA 55
GL+H D+ L+ +V D V+S P+L +W RP +GTG
Sbjct: 457 QGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPE------------SWGTGD 504
Query: 56 MENWGL 61
NWG+
Sbjct: 505 SHNWGV 510
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 1 MGLIHVSDR--EPLIKVSVVGSAKD---VNSVPFLDSWARPAVRDCLDDLIAIPDFGTGA 55
GL+H D+ L+ +V D V+S P+L +W RP +GTG
Sbjct: 457 QGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPE------------SWGTGD 504
Query: 56 MENWGL 61
NWG+
Sbjct: 505 SHNWGV 510
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 2 GLIHVSDR--EPLIKVSVVGSAKD---VNSVPFLDSWARPAVRDCLDDLIAIPDFGTGAM 56
GL+H D+ L+ +V D V+S P+L +W RP +GTG
Sbjct: 460 GLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPE------------SWGTGDS 507
Query: 57 ENWGL 61
NWG+
Sbjct: 508 HNWGV 512
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 45 LIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
++A+ F GAMEN GL + +L + + + V+ HE
Sbjct: 252 IVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHE 298
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 45 LIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
++A+ F GAMEN GL + +L + + + V+ HE
Sbjct: 273 IVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHE 319
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 45 LIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 91
++A+ F GAMEN GL + +L + + + V+ HE
Sbjct: 273 IVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHE 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,754,021
Number of Sequences: 62578
Number of extensions: 141609
Number of successful extensions: 218
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 32
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)