RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7253
(119 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 101 bits (253), Expect = 2e-26
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DL AIPDF +GAMENWGL TYRE+++L+D +++SAS + + VAHELA
Sbjct: 262 DLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELA 311
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 101 bits (252), Expect = 2e-26
Identities = 36/50 (72%), Positives = 41/50 (82%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DLIAIPDF GAMENWGLITYRETS+L+D + +SAS WV V+AHELA
Sbjct: 324 DLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELA 373
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 97.4 bits (243), Expect = 4e-25
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
LI++P+FG GAMENWG IT+RE + E ++ + A V+AHE+A
Sbjct: 220 HLISVPEFGAGAMENWGAITFREIYMDIAE-NSAVTVKRNSANVIAHEIA 268
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 76.4 bits (188), Expect = 1e-17
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 42 LDDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D L+ + + G ME+ + T + +D V+AHELA
Sbjct: 262 YDILVNVDSYPYGGMESPNMTFATPTLLAHDRSNID---------VIAHELA 304
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 70.2 bits (172), Expect = 1e-15
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 42 LDDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
D L+ P F G MEN L T + D+ + ++AHELA
Sbjct: 261 YDLLMLPPSFPFGGMENPRLSFITPTVVAGDKS---------LVNLIAHELA 303
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 70.3 bits (172), Expect = 2e-15
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAP 94
+L+A+ DF GAMEN GL + S+L ++ + + + VV HE
Sbjct: 255 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFH 305
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 69.0 bits (169), Expect = 4e-15
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 44 DLIAIP-DFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELA 93
DL+ +P F G MEN L T + D+ ++ V+AH+++
Sbjct: 263 DLLVLPPSFPYGGMENPCLTFVTPTLLAGDK---------SLSNVIAHQIS 304
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 60.7 bits (147), Expect = 4e-12
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAP 94
++A+ DF GAMEN GL + +L D + + + + VV HE
Sbjct: 247 MVVAVGDFNMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFH 297
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 56.1 bits (135), Expect = 1e-10
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 44 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAP 94
++A+ F GAMEN GL + +L + + + V+ HE
Sbjct: 272 MIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFH 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.17
Identities = 28/134 (20%), Positives = 37/134 (27%), Gaps = 52/134 (38%)
Query: 4 IHVSDREPLIKVS--VVGSAKDVNSVPFLDSWARPAVRDCLDDL-----------IAIP- 49
I S+R+ V + PF PA DL I IP
Sbjct: 407 IPFSERKLKFSNRFLPV-------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 50 -DFGTGA-ME-------------------NWGLIT-YRETSIL-YDEQETSASG----HN 82
D G+ + W T ++ T IL + S G N
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 83 ----WVAVVVAHEL 92
V V+VA L
Sbjct: 520 KDGTGVRVIVAGTL 533
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 25.4 bits (56), Expect = 5.0
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 63 TYRETSILYDEQETSASGHNWVAVVVAHELAPIRHN 98
++ ++ D + VA +AHE+ HN
Sbjct: 116 SHSSGAVNQDHSKNPVG----VACTMAHEMG---HN 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,852,993
Number of extensions: 98868
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 18
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)