BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7254
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ HI+L NMP T + + GLL D F+ +V+MSTYLVA++VCD+ +++
Sbjct: 222 IKIRRESRHIALSNMPKVKTIE----LEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGF 277
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T+ GV VS+YA PD Q +AL S ++DFYE++F + YPL K DLIAIPDF GAME
Sbjct: 278 TSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAME 337
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGLITYRETS+L+D + +SAS WV V+AHELAHQ
Sbjct: 338 NWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQ 375
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 7/224 (3%)
Query: 340 TFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLS 399
T LP W+K NV+ +G+Y V Y+ H WD LI L NH + P DR LI D F L
Sbjct: 611 TLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLV 670
Query: 400 RAGLVNATVPLELSTYLLKEKD---YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLL 456
AG + L+++ YL E + + LE F H + + ++Y+ +
Sbjct: 671 GAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYF 730
Query: 457 TPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKG--FRIPPNL 514
P+ W D GS ++++RS +L A + ++++ F+ WME IP ++
Sbjct: 731 KPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDV 790
Query: 515 REVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASR 558
++VY G + W +Y + +E+ +L L S+
Sbjct: 791 LKIVYSVGAQ--TTAGWNYLLEQYELSMSSAEQNKILYALSTSK 832
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 272 VIPIATSGEVFPWNNVRLPTFAHPLRYVINIHPNLTTLD 310
P+AT+GE FPW +RLP+ PL Y + +HPNLT+LD
Sbjct: 52 AFPVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSLD 90
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ HI+L NMP T + + GLL D F+ +V+MSTYLVA++VCD+ +++
Sbjct: 222 IKIRRESRHIALSNMPKVKTIE----LEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGF 277
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T+ GV VS+YA PD Q +AL S ++DFYE++F + YPL K DLIAIPDF GAME
Sbjct: 278 TSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAME 337
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGLITYRETS+L+D + +SAS WV V+AHELAHQ
Sbjct: 338 NWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQ 375
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 7/224 (3%)
Query: 340 TFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLS 399
T LP W+K NV+ +G+Y V Y+ H WD LI L NH + P DR LI D F L
Sbjct: 611 TLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLV 670
Query: 400 RAGLVNATVPLELSTYLLKEKD---YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLL 456
AG + L+++ YL E + + LE F H + + ++Y+ +
Sbjct: 671 GAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYF 730
Query: 457 TPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKG--FRIPPNL 514
P+ W D GS ++++RS +L A + ++++ F+ WME IP ++
Sbjct: 731 KPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDV 790
Query: 515 REVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASR 558
++VY G + W +Y + +E+ +L L S+
Sbjct: 791 LKIVYSVGAQ--TTAGWNYLLEQYELSMSSAEQNKILYALSTSK 832
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 272 VIPIATSGEVFPWNNVRLPTFAHPLRYVINIHPNLTTLD 310
P+AT+GE FPW +RLP+ PL Y + +HPNLT+LD
Sbjct: 52 AFPVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSLD 90
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ H+++ NMP+ + V GL+ D F +V+MSTYLVAF++ D+++++ +
Sbjct: 160 IKIRREPRHLAISNMPLVKSVTVA----EGLIEDHFDVTVKMSTYLVAFIISDFESVSKI 215
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T GV VSVYA PD + QA +AL+ + +++FYE++F +PYPLPKQDL AIPDF +GAME
Sbjct: 216 TKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAME 275
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGL TYRE+++L+D +++SAS + + VAHELAHQ
Sbjct: 276 NWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQ 313
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 8/233 (3%)
Query: 337 TDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAF 396
TDV LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF
Sbjct: 541 TDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAF 599
Query: 397 TLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRL---FEQYVK 453
L G ++ L+LS YL E + +P L + + + F+ ++
Sbjct: 600 QLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLI 659
Query: 454 KLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEK--GFRIP 511
+LL + W D GS E+++RS +L A + V+ ++ F W E +P
Sbjct: 660 RLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLP 719
Query: 512 PNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQ 564
++ V+ G + + W ++KY + +E+ + L +++ LQ
Sbjct: 720 VDVTLAVFAVGAQ--STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQ 770
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 282 FPWNNVRLPTFAHPLRYVINIHPNLTTL 309
FPWN +RLP + P+ Y + IH NLTTL
Sbjct: 2 FPWNKIRLPEYVIPVHYDLLIHANLTTL 29
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ H+++ NMP+ + V GL+ D F +V+MSTYLVAF++ D+++++ +
Sbjct: 211 IKIRREPRHLAISNMPLVKSVTVA----EGLIEDHFDVTVKMSTYLVAFIISDFESVSKI 266
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T GV VSVYA PD + QA +AL+ + +++FYE++F +PYPLPKQDL AIPDF +GAME
Sbjct: 267 TKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAME 326
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGL TYRE+++L+D +++SAS + + VAHELAHQ
Sbjct: 327 NWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQ 364
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 28/243 (11%)
Query: 337 TDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAF 396
TDV LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF
Sbjct: 592 TDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAF 650
Query: 397 TLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASP-YRLFEQ----- 450
L G ++ L+LS YL E + +P FQ L+E P Y+L E+
Sbjct: 651 QLVSIGKLSIEKALDLSLYLKHETEIMP------VFQ----GLNELIPMYKLMEKRDMNE 700
Query: 451 -------YVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGW 503
++ +LL + W D GS E+++RS +L A + V+ ++ F W
Sbjct: 701 VETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKW 760
Query: 504 MEK--GFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPW 561
E +P ++ V+ G + + W ++KY + +E+ + L +++
Sbjct: 761 KESNGNLSLPVDVTLAVFAVGAQ--STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKE 818
Query: 562 ILQ 564
LQ
Sbjct: 819 KLQ 821
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 274 PIATSGEVFPWNNVRLPTFAHPLRYVINIHPNLTTL 309
P + G FPWN +RLP + P+ Y + IH NLTTL
Sbjct: 45 PKRSDGTPFPWNKIRLPEYVIPVHYDLLIHANLTTL 80
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ H+++ NMP+ + V GL+ D F +V+MSTYLVAF++ D+++++ +
Sbjct: 169 IKIRREPRHLAISNMPLVKSVTVA----EGLIEDHFDVTVKMSTYLVAFIISDFESVSKI 224
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T GV VSVYA PD + QA +AL+ + +++FYE++F +PYPLPKQDL AIPDF +GAME
Sbjct: 225 TKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAME 284
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGL TYRE+++L+D +++SAS + + VAHELAHQ
Sbjct: 285 NWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQ 322
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 8/233 (3%)
Query: 337 TDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAF 396
TDV LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF
Sbjct: 550 TDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAF 608
Query: 397 TLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRL---FEQYVK 453
L G ++ L+LS YL E + +P L + + + F+ ++
Sbjct: 609 QLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLI 668
Query: 454 KLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEK--GFRIP 511
+LL + W D GS E+++RS++L A + V+ ++ F W E +P
Sbjct: 669 RLLRDLIDKQTWTDEGSVSERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLP 728
Query: 512 PNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQ 564
++ V+ G + + W ++KY + +E+ + L +++ LQ
Sbjct: 729 VDVTLAVFAVGAQ--STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQ 779
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 274 PIATSGEVFPWNNVRLPTFAHPLRYVINIHPNLTTL 309
P + G FPWN +RLP + P+ Y + IH NLTTL
Sbjct: 3 PKRSDGTPFPWNKIRLPEYVIPVHYDLLIHANLTTL 38
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALNTSTHMMDF 92
+F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN + +++F
Sbjct: 201 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 260
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
+ + YPLPK D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+A
Sbjct: 261 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIA 320
Query: 153 HELAHQ 158
HELAHQ
Sbjct: 321 HELAHQ 326
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 346 SIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 405
S W+ NVN +G+++V YD+ W + L+TN V +RA +I D+F L+ A +V
Sbjct: 551 SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVP 610
Query: 406 ATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI-- 463
T+ L+ + +L EK+Y+PW AL ++S + Y ++Y++K + P+ H
Sbjct: 611 VTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFET 670
Query: 464 ---GWEDTGSHL-EKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIP--PNLREV 517
W + +L ++ + ++ A G+ +K+ F+ WM P PNLR
Sbjct: 671 LTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST 730
Query: 518 VYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566
+Y I GG +W W + ++ +E L L S + W+L R+
Sbjct: 731 IYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRY 779
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALNTSTHMMDF 92
+F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN + +++F
Sbjct: 202 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 261
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
+ + YPLPK D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+A
Sbjct: 262 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIA 321
Query: 153 HELAHQ 158
HELAHQ
Sbjct: 322 HELAHQ 327
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 346 SIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 405
S W+ NVN +G+++V YD+ W + L+TN V +RA +I D+F L+ A +V
Sbjct: 552 SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVP 611
Query: 406 ATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI-- 463
T+ L+ + +L EK+Y+PW AL ++S + Y ++Y++K + P+ H
Sbjct: 612 VTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFET 671
Query: 464 ---GWEDTGSHL-EKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIP--PNLREV 517
W + +L ++ + ++ A G+ +K+ F+ WM P PNLR
Sbjct: 672 LTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST 731
Query: 518 VYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566
+Y I GG +W W + ++ +E L L S + W+L R+
Sbjct: 732 IYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRY 780
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALNTSTHMMDF 92
+F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN + +++F
Sbjct: 245 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 304
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
+ + YPLPK D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+A
Sbjct: 305 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIA 364
Query: 153 HELAHQ 158
HELAHQ
Sbjct: 365 HELAHQ 370
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 346 SIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 405
S W+ NVN +G+++V YD+ W + L+TN V +RA +I D+F L+ A +V
Sbjct: 595 SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVP 654
Query: 406 ATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI-- 463
T+ L+ + +L EK+Y+PW AL ++S + Y ++Y++K + P+ H
Sbjct: 655 VTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFET 714
Query: 464 ---GWEDTGSHL-EKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIP--PNLREV 517
W + +L ++ + ++ A G+ +K+ F+ WM P PNLR
Sbjct: 715 LTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST 774
Query: 518 VYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566
+Y I GG +W W + ++ +E L L S + W+L R+
Sbjct: 775 IYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRY 823
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALNTSTHMMDF 92
+F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN + +++F
Sbjct: 201 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 260
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
+ + YPLPK D IA+PDF GAMENWGL+TYRE ++L+D Q +S S V V+A
Sbjct: 261 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIA 320
Query: 153 HELAHQ 158
H+LAHQ
Sbjct: 321 HQLAHQ 326
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 346 SIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 405
S W+ NVN +G+++V YD+ W + L+TN V +RA +I D+F L+ A +V
Sbjct: 551 SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVP 610
Query: 406 ATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI-- 463
T+ L+ + +L EK+Y+PW AL ++S + Y ++Y++K + P+ H
Sbjct: 611 VTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFET 670
Query: 464 ---GWEDTGSHL-EKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIP--PNLREV 517
W + +L ++ + ++ A G+ +K+ F+ WM P PNLR
Sbjct: 671 LTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST 730
Query: 518 VYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566
+Y I GG +W W + ++ +E L L S + W+L R+
Sbjct: 731 IYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRY 779
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLP--QAKFALNTSTHMMDF 92
+F + +MSTYL+AF+V ++ + + GV + ++A P + +ALN + +++F
Sbjct: 204 EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNF 263
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
+ + PYPLPK D I +PDF GAMENWGL+TYRE S+L+D +S+S V V+A
Sbjct: 264 FAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIA 323
Query: 153 HELAHQ 158
HELAHQ
Sbjct: 324 HELAHQ 329
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 8/227 (3%)
Query: 348 KWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNAT 407
+W+ N+N +G+YRV YD+ W + L+ +H +RA +I+DAF L+ A V T
Sbjct: 554 EWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVT 613
Query: 408 VPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI---- 463
+ L + +L++E+ Y+PW AL ++ + Y + Y+KK +TP+ H
Sbjct: 614 LALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNT 673
Query: 464 -GWEDTGSHL-EKLMRSDILAAAVLVGVDTVVKESKSKFNGWME--KGFRIPPNLREVVY 519
W + +L ++ + ++ A GV + F WME I PNLR VY
Sbjct: 674 NNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVY 733
Query: 520 YAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566
I GG +EW W ++ + + +E L L S++ WIL R+
Sbjct: 734 CNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRY 780
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 28/243 (11%)
Query: 337 TDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAF 396
TDV LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF
Sbjct: 58 TDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAF 116
Query: 397 TLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASP-YRLFEQ----- 450
L G ++ L+LS YL E + +P FQ L+E P Y+L E+
Sbjct: 117 QLVSIGKLSIEKALDLSLYLKHETEIMP------VFQ----GLNELIPMYKLMEKRDMNE 166
Query: 451 -------YVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGW 503
++ +LL + W D GS E+++RS +L A + V+ ++ F W
Sbjct: 167 VETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKW 226
Query: 504 MEK--GFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPW 561
E +P ++ V+ G + + W ++KY + +E+ + L +++
Sbjct: 227 KESNGNLSLPVDVTLAVFAVGAQ--STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKE 284
Query: 562 ILQ 564
LQ
Sbjct: 285 KLQ 287
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYE 94
+FQ++ MSTYL+ + ++ + + + + + + D+ ++K+ L+ + ++FYE
Sbjct: 151 EFQDTPRMSTYLLYVGIGKFRYEYE-KYRDIDLILASLKDI--RSKYPLDMARKSVEFYE 207
Query: 95 EFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSA-SGHNWVAVVVAH 153
+FG+PY LPK LI++P+FG GAMENWG IT+RE I D E SA + A V+AH
Sbjct: 208 NYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE--IYMDIAENSAVTVKRNSATVIAH 265
Query: 154 ELAHQ 158
E+AHQ
Sbjct: 266 EIAHQ 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 350 IKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 405
IK N + +GFYRV YD DA + ++ SP DR L+DD F +G ++
Sbjct: 474 IKINADSAGFYRVLYD----DATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHID 525
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 35 DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYE 94
+FQ++ MSTYL+ + ++ + + + + + + D+ ++K+ L+ + ++FYE
Sbjct: 151 EFQDTPRMSTYLLYVGIGKFRYEYE-KYRDIDLILASLKDI--RSKYPLDMARKSVEFYE 207
Query: 95 EFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSA-SGHNWVAVVVAH 153
+FG+PY LPK LI++P+FG GAMENWG IT+RE I D E SA + A V+AH
Sbjct: 208 NYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE--IYMDIAENSAVTVKRNSANVIAH 265
Query: 154 ELAHQ 158
E+AHQ
Sbjct: 266 EIAHQ 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 350 IKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 405
IK N + +GFYRV YD DA + ++ SP DR L+DD F +G ++
Sbjct: 474 IKINADSAGFYRVLYD----DATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHID 525
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 45 YLVAFVVCDYQA-----ITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGV 99
YL A V D + IT T K V + V++ + + ++AL M F E++FG+
Sbjct: 189 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 248
Query: 100 PYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159
Y L + +L+A+ DF GAMEN GL + S+L ++ + + + VV HE HQ
Sbjct: 249 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 308
Query: 160 S 160
+
Sbjct: 309 T 309
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 45 YLVAFVVCDYQA-----ITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGV 99
YL A V D + IT T K V + V++ + + ++AL M F E++FG+
Sbjct: 188 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 247
Query: 100 PYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159
Y L + +L+A+ DF GAMEN GL + S+L ++ + + + VV HE HQ
Sbjct: 248 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 307
Query: 160 S 160
+
Sbjct: 308 T 308
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 45 YLVAFVVCDYQA-----ITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGV 99
YL A V D + IT T K V + V++ + + ++AL M F E++FG+
Sbjct: 188 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 247
Query: 100 PYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159
Y L + +L+A+ DF GAMEN GL + S+L ++ + + + VV HE HQ
Sbjct: 248 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 307
Query: 160 S 160
+
Sbjct: 308 T 308
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 45 YLVAFVVCDYQA-----ITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGV 99
YL A V D + IT T K V + V++ + + ++AL M F E++FG+
Sbjct: 189 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 248
Query: 100 PYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159
Y L + +L+A+ DF GAMEN GL + S+L ++ + + + VV HE HQ
Sbjct: 249 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 308
Query: 160 S 160
+
Sbjct: 309 T 309
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 44 TYLVAFVVCDYQAITD----VTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGV 99
+YL A V D D + + V + Y P+ FA+ + + + E FG+
Sbjct: 180 SYLFALVAGDLAVTEDYFTTXSGRNVKIEFYTTEADKPKVGFAVESLKNAXKWDETRFGL 239
Query: 100 PYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAH 157
Y L ++A+ DF GA EN GL + +L D + + + + VV HE H
Sbjct: 240 EYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFH 297
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 37 QESVEMSTYLVAFVVCDYQAITDV----TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 92
Q+ YL A V D+ + D + + V++ +Y L +A +A+ + + M +
Sbjct: 198 QDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKW 257
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
EE FG+ Y L ++A+ F GAMEN GL + +L + + + V+
Sbjct: 258 DEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG 317
Query: 153 HELAH 157
HE H
Sbjct: 318 HEYFH 322
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 37 QESVEMSTYLVAFVVCDYQAITDV----TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 92
Q+ YL A V D+ + D + + V++ +Y L +A +A+ + + M +
Sbjct: 198 QDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKW 257
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
EE FG+ Y L ++A+ F GAMEN GL + +L + + + V+
Sbjct: 258 DEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG 317
Query: 153 HELAH 157
HE H
Sbjct: 318 HEYFH 322
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 37 QESVEMSTYLVAFVVCDYQAITDV----TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 92
Q+ YL A V D+ + D + + V++ +Y L +A +A+ + + M +
Sbjct: 177 QDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKW 236
Query: 93 YEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVA 152
EE FG+ Y L ++A+ F GAMEN GL + +L + + + V+
Sbjct: 237 DEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG 296
Query: 153 HELAH 157
HE H
Sbjct: 297 HEYFH 301
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 45 YLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLP 104
YL+A V D + A +YA +L A + + M+D E+ +G Y
Sbjct: 205 YLIAIGVGDLE----FKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWG 259
Query: 105 KQDLIAIP-DFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVS 160
+ DL+ +P F G MEN L T + +G + ++AHELAH S
Sbjct: 260 RYDLLMLPPSFPFGGMENPRLSFITPTVV---------AGDKSLVNLIAHELAHSWS 307
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 422 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPIS 460
Y W +H+QHWS SLSE L KKL PI
Sbjct: 268 YEKWEKIKQHYQHWSDSLSEEGRGLL-----KKLQIPIE 301
>pdb|1PWU|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWU|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWW|A Chain A, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc.
pdb|1PWW|B Chain B, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc
Length = 776
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 422 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPIS 460
Y W +H+QHWS SLSE L KKL PI
Sbjct: 268 YEKWEKIKQHYQHWSDSLSEEGRGLL-----KKLQIPIE 301
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 422 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 459
Y W +H+QHWS SLSE L KKL PI
Sbjct: 18 YEKWEKIKQHYQHWSDSLSEEGRGLL-----KKLQIPI 50
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 422 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 459
Y W +H+QHWS SLSE +KKL PI
Sbjct: 11 YEKWEKIKQHYQHWSDSLSEEG-----RGLLKKLQIPI 43
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 134 YDEQET---SASGHNWVAVVVAHELAHQVSVVGSAKDVNSVL-----WKKQSNVKMNDHD 185
+D+ ET S+ G+N + +V AHEL H + + S KD +++ + +S+ + D D
Sbjct: 98 FDDDETWTSSSKGYN-LFIVAAHELGHSLGLDHS-KDPGALMFPIYTYTGKSHFMLPDDD 155
Query: 186 VDDVAFLTG 194
V + FL G
Sbjct: 156 VQGIQFLYG 164
>pdb|3REN|A Chain A, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
pdb|3REN|B Chain B, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
Length = 350
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 331 IVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRAS 390
IV +N + +SIKWIK + GF TY+ DA Q + SP+ ++
Sbjct: 236 IVILNRIEAGENEESSIKWIKEKFKKDGFLVATYNGKNGDATSQ-------IESPSIYSN 288
Query: 391 LIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWA 426
+ A + L N + +L Y +K KD V +
Sbjct: 289 VALIANYIGDKELFNKAID-KLKYYQIKNKDSVLYG 323
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 304 PNLTTLDVKVVYHFKKIRNLGGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQ 356
P+ L+ V+YH K Y E +V MN DV + IKW V Q
Sbjct: 32 PSRPALEEDVIYHVK----YDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQ 80
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 73 PDLLPQAKFALNTSTHMMDFYE--EFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRET 130
P LL + + TS M+ E EFF Y L L PD AM++ ++ ET
Sbjct: 283 PTLLTLPRIKVTTSQDMLSIMEKLEFFDFSYDLNLCGLTEDPDLQVSAMQHQTVLELTET 342
Query: 131 SI 132
+
Sbjct: 343 GV 344
>pdb|1TFF|A Chain A, Structure Of Otubain-2
Length = 234
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 347 IKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNA 406
++ ++ + + S +V D D ++Q L+ L+ AF +RA
Sbjct: 106 VELVEKDGSVSSLLKVFNDQSASDHIVQFLR-------------LLTSAFIRNRADFFRH 152
Query: 407 TVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI 463
+ E + P AT +H Q T+LS+A L +YV ++ T ++HH+
Sbjct: 153 FIDEEXDIKDFCTHEVEPXATECDHIQ--ITALSQALSIALQVEYVDEMDTALNHHV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,210,387
Number of Sequences: 62578
Number of extensions: 722386
Number of successful extensions: 1567
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 55
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)