Query psy7254
Match_columns 567
No_of_seqs 257 out of 1776
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:58:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 9E-105 2E-109 901.8 43.8 527 1-566 182-763 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1.1E-83 2.3E-88 730.8 42.6 510 1-564 147-720 (831)
3 COG0308 PepN Aminopeptidase N 100.0 9.4E-58 2E-62 518.3 37.3 516 1-563 163-744 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 3E-53 6.5E-58 475.9 41.0 509 1-554 135-749 (863)
5 PRK14015 pepN aminopeptidase N 100.0 1.3E-52 2.8E-57 472.2 41.4 510 1-555 148-760 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 1.6E-43 3.5E-48 387.3 13.5 239 1-288 153-451 (601)
7 PF11838 ERAP1_C: ERAP1-like C 100.0 4E-41 8.6E-46 346.8 19.3 214 349-566 1-223 (324)
8 PF01433 Peptidase_M1: Peptida 100.0 1.9E-41 4.2E-46 358.1 12.9 185 1-200 153-340 (390)
9 KOG1047|consensus 100.0 1.1E-31 2.5E-36 273.8 11.8 240 2-285 159-457 (613)
10 KOG1932|consensus 99.7 2.3E-16 5E-21 173.2 11.4 181 1-200 203-386 (1180)
11 PF13485 Peptidase_MA_2: Pepti 98.2 7E-07 1.5E-11 78.2 2.2 82 143-243 21-128 (128)
12 COG3975 Predicted protease wit 98.0 4.7E-05 1E-09 79.6 10.5 115 63-195 168-298 (558)
13 PF07607 DUF1570: Protein of u 93.8 0.018 3.8E-07 50.3 0.1 35 149-195 3-43 (128)
14 PF10460 Peptidase_M30: Peptid 92.8 0.29 6.3E-06 50.4 7.0 125 62-200 16-188 (366)
15 PF05299 Peptidase_M61: M61 gl 92.4 0.062 1.3E-06 46.5 1.3 40 147-197 4-57 (122)
16 PRK04860 hypothetical protein; 91.0 0.25 5.4E-06 45.0 3.8 69 82-159 5-75 (160)
17 PF10023 DUF2265: Predicted am 89.8 0.27 5.9E-06 49.9 3.2 41 144-198 162-202 (337)
18 PF10026 DUF2268: Predicted Zn 88.0 0.97 2.1E-05 42.8 5.5 95 85-197 4-111 (195)
19 smart00731 SprT SprT homologue 86.2 0.49 1.1E-05 42.6 2.2 63 88-159 5-71 (146)
20 COG4324 Predicted aminopeptida 86.2 0.51 1.1E-05 45.6 2.4 115 70-198 71-234 (376)
21 PF01863 DUF45: Protein of unk 85.4 1.5 3.2E-05 41.7 5.3 77 81-170 109-187 (205)
22 PF11940 DUF3458: Domain of un 84.1 58 0.0013 34.1 17.9 255 290-557 6-298 (367)
23 PF04450 BSP: Peptidase of pla 83.3 3.1 6.8E-05 39.6 6.4 101 81-194 25-132 (205)
24 PF13646 HEAT_2: HEAT repeats; 81.0 3.1 6.7E-05 33.1 4.8 75 474-555 14-88 (88)
25 PF13699 DUF4157: Domain of un 78.0 4.6 0.0001 32.1 4.7 63 88-159 5-73 (79)
26 PF12725 DUF3810: Protein of u 74.9 3.8 8.3E-05 41.9 4.4 32 146-197 195-226 (318)
27 PF01435 Peptidase_M48: Peptid 72.6 2.7 5.8E-05 40.4 2.6 67 90-165 37-105 (226)
28 PRK04351 hypothetical protein; 70.9 2.9 6.3E-05 37.7 2.1 17 143-159 57-73 (149)
29 PRK05457 heat shock protein Ht 65.0 9.1 0.0002 38.5 4.6 64 87-159 80-146 (284)
30 PF01431 Peptidase_M13: Peptid 64.8 5.2 0.00011 38.0 2.7 32 133-164 22-53 (206)
31 COG3590 PepO Predicted metallo 63.1 2.2 4.7E-05 46.0 -0.3 38 133-170 473-518 (654)
32 PRK03072 heat shock protein Ht 61.2 12 0.00026 37.7 4.7 65 86-159 72-139 (288)
33 PF01447 Peptidase_M4: Thermol 60.7 13 0.00029 33.5 4.4 27 77-104 67-93 (150)
34 COG4783 Putative Zn-dependent 60.4 7.9 0.00017 41.1 3.2 54 101-159 89-142 (484)
35 PRK01345 heat shock protein Ht 59.3 14 0.0003 37.9 4.7 65 86-159 69-136 (317)
36 PF12315 DUF3633: Protein of u 58.7 6.7 0.00015 37.0 2.1 39 147-198 93-134 (212)
37 PF01347 Vitellogenin_N: Lipop 57.7 44 0.00096 37.5 9.0 87 475-565 505-596 (618)
38 PRK04897 heat shock protein Ht 57.6 15 0.00033 37.2 4.7 65 86-159 82-149 (298)
39 PF10263 SprT-like: SprT-like 56.1 14 0.00031 33.3 3.8 16 144-159 57-72 (157)
40 PRK03982 heat shock protein Ht 56.0 17 0.00038 36.6 4.8 63 86-159 70-137 (288)
41 COG0501 HtpX Zn-dependent prot 55.5 16 0.00034 36.8 4.5 60 92-159 107-169 (302)
42 PRK03001 M48 family peptidase; 55.4 15 0.00032 37.0 4.2 65 86-159 69-136 (283)
43 cd04269 ZnMc_adamalysin_II_lik 55.1 35 0.00075 32.0 6.5 15 145-159 129-143 (194)
44 PRK02870 heat shock protein Ht 54.8 19 0.0004 37.2 4.8 64 88-159 119-185 (336)
45 COG0362 Gnd 6-phosphogluconate 54.5 82 0.0018 33.1 9.1 119 383-517 310-444 (473)
46 COG3091 SprT Zn-dependent meta 54.2 18 0.00039 32.3 3.8 73 86-165 7-81 (156)
47 PF06114 DUF955: Domain of unk 53.5 5.9 0.00013 33.4 0.8 31 129-165 28-58 (122)
48 COG1451 Predicted metal-depend 51.9 20 0.00042 34.7 4.2 77 81-170 120-198 (223)
49 PRK02391 heat shock protein Ht 51.6 23 0.00049 35.9 4.8 65 86-159 78-145 (296)
50 cd04279 ZnMc_MMP_like_1 Zinc-d 49.7 56 0.0012 29.4 6.7 36 65-100 2-40 (156)
51 PF13574 Reprolysin_2: Metallo 46.6 10 0.00022 35.1 1.2 13 147-159 111-123 (173)
52 KOG2661|consensus 46.4 12 0.00026 37.8 1.8 22 142-165 270-291 (424)
53 KOG2653|consensus 45.1 85 0.0018 32.4 7.5 115 387-517 319-449 (487)
54 PF14675 FANCI_S1: FANCI solen 43.8 1.3E+02 0.0027 29.2 8.3 117 386-503 3-123 (223)
55 PHA02456 zinc metallopeptidase 42.7 11 0.00024 31.6 0.7 14 146-159 78-91 (141)
56 cd04272 ZnMc_salivary_gland_MP 42.1 43 0.00093 32.2 4.9 13 147-159 145-157 (220)
57 PRK01265 heat shock protein Ht 41.3 38 0.00083 34.7 4.6 63 87-159 86-152 (324)
58 PF01421 Reprolysin: Reprolysi 38.8 40 0.00086 31.7 4.1 19 144-165 128-146 (199)
59 smart00638 LPD_N Lipoprotein N 35.4 6.6E+02 0.014 27.9 17.7 171 381-565 369-552 (574)
60 PF08219 TOM13: Outer membrane 35.0 24 0.00052 27.5 1.5 16 148-163 53-68 (77)
61 PF08014 DUF1704: Domain of un 33.5 1.5E+02 0.0034 30.7 7.6 91 89-195 118-214 (349)
62 PF08325 WLM: WLM domain; Int 33.3 28 0.00061 32.6 2.0 25 139-165 74-98 (186)
63 PF09768 Peptidase_M76: Peptid 31.0 1.8E+02 0.0039 26.9 6.8 69 80-159 9-83 (173)
64 KOG2719|consensus 28.6 63 0.0014 34.2 3.8 65 90-158 223-291 (428)
65 COG3227 LasB Zinc metalloprote 28.6 66 0.0014 34.4 3.9 26 73-98 265-290 (507)
66 PF13688 Reprolysin_5: Metallo 28.4 31 0.00066 32.3 1.4 18 145-165 140-157 (196)
67 PF06262 DUF1025: Possibl zinc 28.4 39 0.00085 28.0 1.8 36 121-158 49-84 (97)
68 PF13402 M60-like: Peptidase M 27.8 53 0.0011 33.2 3.1 104 79-198 145-257 (307)
69 TIGR02421 QEGLA conserved hypo 27.7 1.9E+02 0.0042 30.1 7.1 76 105-195 155-237 (366)
70 COG5442 FlaF Flagellar biosynt 27.5 48 0.001 27.4 2.1 36 362-397 49-84 (115)
71 KOG3607|consensus 26.7 1.3E+02 0.0028 34.4 6.1 92 66-165 242-338 (716)
72 PF08569 Mo25: Mo25-like; Int 25.5 5.4E+02 0.012 26.5 9.9 122 404-555 205-331 (335)
73 KOG3624|consensus 24.3 63 0.0014 37.0 3.2 36 135-170 506-549 (687)
74 TIGR02574 stabl_TIGR02574 puta 22.7 2.7E+02 0.0058 20.8 5.4 52 382-433 2-61 (63)
75 PRK12793 flaF flagellar biosyn 21.2 83 0.0018 27.0 2.5 36 362-397 49-84 (115)
76 COG3824 Predicted Zn-dependent 21.2 50 0.0011 28.3 1.2 19 144-165 106-124 (136)
77 PRK13267 archaemetzincin-like 20.8 94 0.002 28.9 3.0 17 143-159 121-137 (179)
78 PF13582 Reprolysin_3: Metallo 20.2 50 0.0011 28.2 1.1 11 149-159 109-119 (124)
No 1
>KOG1046|consensus
Probab=100.00 E-value=9e-105 Score=901.82 Aligned_cols=527 Identities=35% Similarity=0.636 Sum_probs=489.4
Q ss_pred CEEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeecccCCeeEEEEeCCCCchhHH
Q psy7254 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK 80 (567)
Q Consensus 1 i~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~~~~i~v~~~p~~~~~~~ 80 (567)
|+|.||++++|+||||+.++. ..++|+++++|++|||||||++||+||+|+..+..+.+|+++|+|++|+...+++
T Consensus 182 Itl~hp~~~~aLSNm~v~~~~----~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~ 257 (882)
T KOG1046|consen 182 ITLVHPKGYTALSNMPVIKEE----PVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQ 257 (882)
T ss_pred EEEEecCCceEeecCcccccc----cccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHH
Confidence 689999999999999999887 6777799999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhccc
Q psy7254 81 FALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVS 160 (567)
Q Consensus 81 ~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~ 160 (567)
+|++.++++|+||+++||+|||+||+|+|++|||..|||||||||+|+|..+||+|..++...+++++.+||||+||||
T Consensus 258 ~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQW- 336 (882)
T KOG1046|consen 258 FALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQW- 336 (882)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc------------------------------------c
Q psy7254 161 VVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS------------------------------------Q 201 (567)
Q Consensus 161 ~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p------------------------------------~ 201 (567)
|||+ +||+| +|| |||| |+|++++++++.+| +
T Consensus 337 -FGNLVTm~wW~d-LWL-------nEGf-At~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~e 406 (882)
T KOG1046|consen 337 -FGNLVTMKWWND-LWL-------NEGF-ATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSE 406 (882)
T ss_pred -hcCcccHhhhhh-hhh-------cccH-HHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcch
Confidence 9999 99999 999 9999 99999999997754 5
Q ss_pred hhhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccch----hh----cccc
Q psy7254 202 NGIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDL----NG----AKRP 271 (567)
Q Consensus 202 ~~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~----~~----~~~~ 271 (567)
+.+.||.|+|.||+++ ||+.++ |+ +.|++||+.||.+|+| +|++++|| +. ....
T Consensus 407 i~e~fd~i~Y~KGasvlRML~~~l--Ge------~~F~~gi~~yL~~~~y--------~na~~~DLw~~l~~~~~~~v~~ 470 (882)
T KOG1046|consen 407 IDEIFDEISYQKGASVLRMLESLL--GE------EVFRKGLRSYLKKHQY--------SNAKTEDLWDALEEGSGLDVSE 470 (882)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHH--CH------HHHHHHHHHHHHHhcc--------CCCCchhHHHHHhccCCCCHHH
Confidence 5568999999999998 999999 99 8899999999999999 99999998 21 1239
Q ss_pred cccccccCCCcceEEEec---ceEEeeceeeecCCCCCccCCCCcEEE--EEEEEccCCcccceEEEecCceeEEeCCCC
Q psy7254 272 VIPIATSGEVFPWNNVRL---PTFAHPLRYVINIHPNLTTLDVKVVYH--FKKIRNLGGYKEQEIVWMNMTDVTFKLPNS 346 (567)
Q Consensus 272 ~~~~W~~q~G~P~v~v~~---~~~i~Q~rf~~~~~~~~~~~~~~~~W~--i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (567)
+|+.|+.|+|||+|+|.+ .+.++|+||....+ ..+.+++|+ |+|.+.+.+. ....|++.++.++.++..
T Consensus 471 ~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~~~----~~~~~~~w~iPl~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 544 (882)
T KOG1046|consen 471 LMDTWTKQMGYPVVTVERNGDSLTLTQERFLSDPD----PSEDNYLWWIPLTYTTSGSGS--VPKFWLSSKSTTIKLPES 544 (882)
T ss_pred HHhhhhcCCCCceEEEEecCCEEEEehhhhccCCC----ccccCcccceeEEEEcCCCCc--cceeeecCCCcceecCCC
Confidence 999999999999999998 67899999997654 345678999 5555554442 256888988888888887
Q ss_pred CceEEEcCCCeeEEEeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHcCCcchhhhhHhhhhhhcCCCchhHH
Q psy7254 347 IKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWA 426 (567)
Q Consensus 347 ~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~la~ag~l~~~~~l~l~~yL~~E~~y~~W~ 426 (567)
++||++|.++.|||||+||+++|..|+++|.. +..+++.||++||+|+|+|+++|+++++.+|+++.||.+|++|.||.
T Consensus 545 ~~wi~~N~~~~g~yRV~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~ 623 (882)
T KOG1046|consen 545 DQWIKVNLEQTGYYRVNYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWS 623 (882)
T ss_pred CeEEEEeCCcceEEEEEeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHH
Confidence 78999999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhhcccccCCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhc
Q psy7254 427 TALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSH-LEKLMRSDILAAAVLVGVDTVVKESKSKFNGWME 505 (567)
Q Consensus 427 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~s~-~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~ 505 (567)
++...+..+.. +...+.+..++.|+.+++.+.++++||.++... .+..+|..++..||..|+++|.+.|.++|++|..
T Consensus 624 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~ 702 (882)
T KOG1046|consen 624 AAIRSLYKLHS-LEDTEIYSKFKEFVKKLILPIFEKLGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLA 702 (882)
T ss_pred HHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Confidence 99877777666 445789999999999999999999999985444 8899999999999999999999999999999999
Q ss_pred cCCCCCcchhhhheeheeecCCHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChhHHhhc
Q psy7254 506 KGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566 (567)
Q Consensus 506 ~~~~ip~dlr~~Vyc~gi~~g~~~~w~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~r~ 566 (567)
++..+|+++|.+|||+++++|+++.|++++++|+++....||..+++||+|++++++++|+
T Consensus 703 ~~~~ip~~lr~~vy~~~~~~g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~ 763 (882)
T KOG1046|consen 703 GTNPIPPDLREVVYCTAVQFGTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRL 763 (882)
T ss_pred cCCCCChhhhhhhhhHHHHhcCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999885
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.1e-83 Score=730.79 Aligned_cols=510 Identities=17% Similarity=0.138 Sum_probs=415.4
Q ss_pred CEEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeecccCCeeEEEEeCCCCchh--
Q psy7254 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQ-- 78 (567)
Q Consensus 1 i~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~~~~i~v~~~p~~~~~-- 78 (567)
|+|++|++|+|+|||++.+.. ..+|.++++|++|||||||++||+||+|..++.. .+|+++++|++|+..+.
T Consensus 147 ltit~p~~~~v~sNg~~~~~~-----~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~-~~gvpi~v~~~~~~~~~~~ 220 (831)
T TIGR02412 147 FSVKAPEDWTVISNSRETDVT-----PEPADRRWEFPETPKLSTYLTAVAAGPYHSVQDE-SRSYPLGIYARRSLAQYLD 220 (831)
T ss_pred EEEEECCCceEECCCcccccc-----ccCCCeEEEecCCCCcccceEEEEEeceEEEeec-CCCEEEEEEECcchhhhhh
Confidence 589999999999999987664 3456788999999999999999999999998864 47899999999998764
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhc
Q psy7254 79 AKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158 (567)
Q Consensus 79 ~~~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 158 (567)
++++++.++++|++|+++||+|||++|+|+|++|+|..|||||||+|+|+|.. ++++. .+...++.++.+||||+|||
T Consensus 221 ~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~-l~~~~-~~~~~~~~~~~viaHElAHq 298 (831)
T TIGR02412 221 ADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAENF-LHRAE-ATRAEKENRAGVILHEMAHM 298 (831)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCcccccceeeechhh-ccCCc-CCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999995 45543 33456678899999999999
Q ss_pred ccccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc-----------------------------------
Q psy7254 159 VSVVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS----------------------------------- 200 (567)
Q Consensus 159 W~~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p----------------------------------- 200 (567)
| |||+ +||+| +|| |||| |+|+++++.++..|
T Consensus 299 W--FGnlVT~~wW~d-lWL-------nEGF-Aty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~ 367 (831)
T TIGR02412 299 W--FGDLVTMRWWND-LWL-------NESF-AEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADL 367 (831)
T ss_pred H--hCCEeccccccc-hhH-------HHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCH
Confidence 9 9999 99999 999 9999 99999988775532
Q ss_pred -chhhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccch----hhccc---
Q psy7254 201 -QNGIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDL----NGAKR--- 270 (567)
Q Consensus 201 -~~~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~----~~~~~--- 270 (567)
++...|+.++|.||+++ ||+.++ |+ +.|+++|+.|+++|++ +|+++.|| +++++
T Consensus 368 ~~~~~~fd~isY~KGa~vL~mL~~~l--Ge------e~F~~glr~Yl~~~~~--------~nat~~Dl~~~l~~~sg~dl 431 (831)
T TIGR02412 368 ADALSNFDGITYAKGASVLKQLVAWV--GE------EAFFAGVNAYFKRHAF--------GNATLDDLIDSLAKASGRDL 431 (831)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHH--CH------HHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHHhCCCH
Confidence 23356899999999999 999999 99 8899999999999999 99999999 34444
Q ss_pred -ccccccccCCCcceEEEecc---eEEeeceeeecCCCCCccCCCCcEEE--EEEEEccCCcc---cceEEEecCceeEE
Q psy7254 271 -PVIPIATSGEVFPWNNVRLP---TFAHPLRYVINIHPNLTTLDVKVVYH--FKKIRNLGGYK---EQEIVWMNMTDVTF 341 (567)
Q Consensus 271 -~~~~~W~~q~G~P~v~v~~~---~~i~Q~rf~~~~~~~~~~~~~~~~W~--i~~~~~~~~~~---~~~~~~~~~~~~~~ 341 (567)
.+|++|+.|+|+|+|+|.+. -.++ ..+ ...+. .+ ..|+ |++.+.+++.. ....++++.....+
T Consensus 432 ~~~~~~W~~~~G~P~l~v~~~~~~~~~~-~~~-~~~~~----~~--~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (831)
T TIGR02412 432 SAWSDAWLETAGVNTLTPEITTDGGVVS-ALY-PESSG----PP--RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTAV 503 (831)
T ss_pred HHHHHHHHcCCCCceEEEEEEECCCeEE-EEE-EecCC----CC--CCeeEEEeeeecCCCcceeeeEEEEEEecCceee
Confidence 79999999999999998761 1122 111 11110 11 3366 44443333221 11224444332222
Q ss_pred e-CC--CCCceEEEcCCCeeEEEeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHcCCcchhhhhHhh-hhhh
Q psy7254 342 K-LP--NSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELS-TYLL 417 (567)
Q Consensus 342 ~-l~--~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~la~ag~l~~~~~l~l~-~yL~ 417 (567)
. +. .+.+||++|.++.|||||+||+++|+.|+++|.. ..++.+|++|++|+|+++++|.++++.+|+++ .||+
T Consensus 504 ~~~~~~~~~~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~~---~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~ 580 (831)
T TIGR02412 504 PQLVGKRAPALVLLNDDDLTYAKVRLDPTSFDTVLAALSK---LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVP 580 (831)
T ss_pred hhhcCCCCCCEEEEeCCCcEEEEEECCHHHHHHHHHHhhh---CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 2 21 1457999999999999999999999999999953 23799999999999999999999999999966 8999
Q ss_pred cCCCchhHHHHHHHHH-HHHhhccCCchhHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7254 418 KEKDYVPWATALEHFQ-HWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKES 496 (567)
Q Consensus 418 ~E~~y~~W~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~s~~~~~lR~~il~~ac~~g~~~c~~~A 496 (567)
+|++|.||..++..+. .+...+.+.+.+..+++|+.+++.+... .++++.+.++|. +..++|..|++.|++.+
T Consensus 581 ~E~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 654 (831)
T TIGR02412 581 SETDYAVVQQVLSQLLRAVAAQYAPIADRPALLAVAALACRSLRR-----AMESGPDFQLRW-LRALALTATDPDSLRRL 654 (831)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-----ccCCCccHHHHH-HHHHHHhcCCHHHHHHH
Confidence 9999999999997777 6655544356788899999888875432 233333444433 55579999999999999
Q ss_pred HHHhhhhhccCCCCCcchhhhheeheeecCCHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChhHHh
Q psy7254 497 KSKFNGWMEKGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQ 564 (567)
Q Consensus 497 ~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~g~~~~w~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~ 564 (567)
+++|+.++++ ..||||+|..|||.+++ |+.++|+.++++|++++++.+|..+|.||||++||++++
T Consensus 655 ~~~~~~~~~~-~~i~~dlr~~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~ 720 (831)
T TIGR02412 655 LSLLDGKIKG-LALDPDLRWRIIARLAA-LGFIDADDIAAELERDNTASGEEHAAAARAARPDAAAKR 720 (831)
T ss_pred HHHHhCCCCC-cccCHhHHHHHHHHHHh-cCCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHH
Confidence 9999998765 48999999999997666 677889999999999999999999999999999999887
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-58 Score=518.33 Aligned_cols=516 Identities=22% Similarity=0.254 Sum_probs=413.0
Q ss_pred CEEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeeccc---CCeeEEEEeCCCCch
Q psy7254 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTA---KGVSVSVYAPPDLLP 77 (567)
Q Consensus 1 i~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~---~~~~i~v~~~p~~~~ 77 (567)
++|+.++++.+||||+..... ...+|+++++|..++||||||+|+++|+|+..+.... +++++++|++++...
T Consensus 163 ~~i~~~k~~~~iSN~~~~~~~----~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 163 LTIRADKGPKLISNGNLIDGG----TLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred EEEEecCcceeeecCCccccc----cccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 578999999999999998886 5668899999999999999999999999988776542 489999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhh
Q psy7254 78 QAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAH 157 (567)
Q Consensus 78 ~~~~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 157 (567)
.++++++.++++++||+++||+|||+++ ++|++|+|++|||||||+++|++..+|.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998888888889999999999999
Q ss_pred cccccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc----------------------------------
Q psy7254 158 QVSVVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS---------------------------------- 200 (567)
Q Consensus 158 qW~~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p---------------------------------- 200 (567)
|| |||+ +||++ +|| |||| |+|+++...+.+.|
T Consensus 318 qW--fGnlVT~~~W~~-lWL-------nEgf-at~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~ 386 (859)
T COG0308 318 QW--FGNLVTMKWWDD-LWL-------NEGF-ATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVY 386 (859)
T ss_pred hc--ccceeeccCHHH-HHH-------hhhh-HHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCC
Confidence 99 9999 99999 999 9999 99999988776632
Q ss_pred ---chhhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccch----hhccc-
Q psy7254 201 ---QNGIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDL----NGAKR- 270 (567)
Q Consensus 201 ---~~~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~----~~~~~- 270 (567)
+++..||.++|.||++| ||+.++ |+ +.|+++|+.|+++|.+ ++++++|| ++++|
T Consensus 387 ~~~ei~~~fD~i~Y~KGs~vlrml~~~l--G~------e~F~kgl~~yf~~h~~--------~~~~~~Dl~~a~~~~sg~ 450 (859)
T COG0308 387 DPKEINDFFDAIVYEKGASVLRMLETLL--GE------EAFRKGLSLYFKRHAG--------GNATTMDLWKALEDASGK 450 (859)
T ss_pred CccchhhhcchhhcchhHHHHHHHHHHH--CH------HHHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHhCC
Confidence 67888999999999998 999999 98 8899999999999999 99999999 44444
Q ss_pred ---ccccccccCCCcceEEEec----ceEEeeceeeecCCCCCccCCCCcEEEEEEE--EccCCcccceEEEecCceeEE
Q psy7254 271 ---PVIPIATSGEVFPWNNVRL----PTFAHPLRYVINIHPNLTTLDVKVVYHFKKI--RNLGGYKEQEIVWMNMTDVTF 341 (567)
Q Consensus 271 ---~~~~~W~~q~G~P~v~v~~----~~~i~Q~rf~~~~~~~~~~~~~~~~W~i~~~--~~~~~~~~~~~~~~~~~~~~~ 341 (567)
.+|..|+.|+|+|++.|.. .+.++|.+|.... ......|+|+.. ..+.+. .....+.+...++
T Consensus 451 dl~~~~~~w~~q~G~P~l~v~~~~~~~~~l~~~q~~~~~------~~~~~~~~iPl~~~~~~~~~--~~~~~~~~~~~t~ 522 (859)
T COG0308 451 DLSAFFESWLSQAGYPVLTVSVRYDDFFKLTQKQFTPPG------QEEKRPWPIPLAIKLLDGGG--VKVLLLTEGEQTV 522 (859)
T ss_pred cHHHHHHHHHhCCCCCceeeeeeccccEEEEEEEeccCC------CccCceeeeccEEEecCCCC--ceeeeeeccceEE
Confidence 5899999999999999976 3578999998643 123467886644 332221 2333444444344
Q ss_pred eCCCC----CceEEEcCCCeeEEEeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHcCCcchhhhhHhhhhhh
Q psy7254 342 KLPNS----IKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLL 417 (567)
Q Consensus 342 ~l~~~----~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~la~ag~l~~~~~l~l~~yL~ 417 (567)
..... -.-+++|....++|++.|+.+.+..+++... .+.+.+|+.++.|..++..+|..+....+..+.-..
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 598 (859)
T COG0308 523 TFELVGIPPFPSLKVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAF 598 (859)
T ss_pred EEecccCCccceeeccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 33321 2258899999999999999999988866542 799999999999999999999999999998887665
Q ss_pred cCCCchhHHH-HH-HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHhcCCHHHHHH
Q psy7254 418 KEKDYVPWAT-AL-EHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKE 495 (567)
Q Consensus 418 ~E~~y~~W~~-a~-~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~s~~~~~lR~~il~~ac~~g~~~c~~~ 495 (567)
++.....+.. ++ ..+..+-.. .+....+.......+...+.++|+....+......+...+..++-..+..++..
T Consensus 599 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (859)
T COG0308 599 NAELLYVSLEQAFKSLLLALPSF---ADLEKFIDPDAIDQLRDALVRLGAEAVADDLLALYHIGALSQSLYEEDASLAAL 675 (859)
T ss_pred hhhhhHHHHHHHHHHHHHhcccc---hhhhhhcCHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhccccccccHHHHHH
Confidence 5544444433 33 222222111 111145666677778888888888763333333333332266777889999999
Q ss_pred HHHHhhhhhccCCCCCcchhhhheeheeec-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChhHH
Q psy7254 496 SKSKFNGWMEKGFRIPPNLREVVYYAGIKY-GGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWIL 563 (567)
Q Consensus 496 A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~-g~~~~w~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll 563 (567)
+..+|..+-.....++|++|..+-.+-... +..+.+..+.+.|...+....+..+..+.+....+..+
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (859)
T COG0308 676 RALRNACLERLEKQEDPELRSLVVKAYAAAGNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDK 744 (859)
T ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHhcChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHH
Confidence 999999987766678999887766554443 33446899999999888888899999988877665544
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=3e-53 Score=475.94 Aligned_cols=509 Identities=15% Similarity=0.133 Sum_probs=359.7
Q ss_pred CEEEEcCC-C-eEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeec----ccCCeeEEEEeCCC
Q psy7254 1 MSIFRDRF-H-ISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV----TAKGVSVSVYAPPD 74 (567)
Q Consensus 1 i~i~~p~~-~-~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~----~~~~~~i~v~~~p~ 74 (567)
|+|++|++ | +++|||++++.. ..++|+++++|+.++||||||+||+||+|+.++.. ...++++++|++|+
T Consensus 135 vtI~~p~~~y~v~lSNg~~~~~~----~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~ 210 (863)
T TIGR02414 135 VTITADKKKYPVLLSNGNKIASG----ELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEG 210 (863)
T ss_pred EEEEECCCcceEEEeCCccccce----ecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccC
Confidence 58999986 7 568999887665 45788999999999999999999999999988753 23468999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHH
Q psy7254 75 LLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 154 (567)
Q Consensus 75 ~~~~~~~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 154 (567)
...+++++++.++++|++||++||+|||++|+++|++|+|..||||||||++|++..+++++...+...+..+..+||||
T Consensus 211 ~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHE 290 (863)
T TIGR02414 211 NKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHE 290 (863)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877777788899999999
Q ss_pred hhhcccccCCc---cccccccccccCccccCchhhhhhhHhhhhhhc---------------------------cc----
Q psy7254 155 LAHQVSVVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHY---------------------------QS---- 200 (567)
Q Consensus 155 laHqW~~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~---------------------------~p---- 200 (567)
+|||| |||+ +||++ +|| |||| |+|++..+.... .|
T Consensus 291 laHqW--fGNlVT~~~W~~-LWL-------nEGf-Aty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~~ 359 (863)
T TIGR02414 291 YFHNW--TGNRVTCRDWFQ-LSL-------KEGL-TVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRPE 359 (863)
T ss_pred HHHHH--hcceeeecchhh-hhh-------hhhH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCCc
Confidence 99999 9999 99999 999 9999 999986433221 01
Q ss_pred ---chhhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccch----hhccc-
Q psy7254 201 ---QNGIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDL----NGAKR- 270 (567)
Q Consensus 201 ---~~~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~----~~~~~- 270 (567)
++...|+.++|.||++| ||+..+ |+ +.|+++|+.|+++|++ ++++++|| +++++
T Consensus 360 ~~~~i~~~y~~i~Y~KGA~vLrML~~~L--Ge------e~F~~gLr~Yl~r~~~--------~~at~~Df~~ale~asg~ 423 (863)
T TIGR02414 360 SYVEINNFYTATVYEKGAEVIRMLHTLL--GE------EGFRKGMDLYFSRHDG--------QAVTCEDFVAAMEDASGR 423 (863)
T ss_pred chhhHHhccchHHhHHHHHHHHHHHHHh--CH------HHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhCC
Confidence 34456889999999999 999999 99 8899999999999999 99999999 44444
Q ss_pred ---ccccccccCCCcceEEEec---------ceEEeeceeeecCCCCCccCCCCcEEEEEEE----EccCCcc-------
Q psy7254 271 ---PVIPIATSGEVFPWNNVRL---------PTFAHPLRYVINIHPNLTTLDVKVVYHFKKI----RNLGGYK------- 327 (567)
Q Consensus 271 ---~~~~~W~~q~G~P~v~v~~---------~~~i~Q~rf~~~~~~~~~~~~~~~~W~i~~~----~~~~~~~------- 327 (567)
+| .+|+.|+|+|+|+|++ .++++|.+.. .+. .+....|+||+. ..++...
T Consensus 424 dL~~f-~~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~---~~~---~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~ 496 (863)
T TIGR02414 424 DLNQF-RRWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPP---TPG---QTEKKPLHIPIAVGLLGPNGRKLMLSLDGE 496 (863)
T ss_pred CHHHH-HHHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCC---CCC---CCcCCceEEEEEEEEEeCCCCEeeecccCC
Confidence 45 5899999999999976 3455555321 111 112345774433 2222210
Q ss_pred --cceEEEecCceeEEeCCC--CCceEEEcCCCeeEEEeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHH----
Q psy7254 328 --EQEIVWMNMTDVTFKLPN--SIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLS---- 399 (567)
Q Consensus 328 --~~~~~~~~~~~~~~~l~~--~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~la---- 399 (567)
...++.++..+.++.+++ ..-.+.++.+.+.+=++.|+... +.|+-.++.+++.+..-+-+|-|-.-.-+.
T Consensus 497 ~~~~~~l~l~~~~~~f~f~~~~~~p~~sl~r~fsapv~l~~~~~~-~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~ 575 (863)
T TIGR02414 497 RDTTRVLELTEAEQTFVFEGIAEKPVPSLLRGFSAPVNLEYPYSD-EDLLLLLAHDSDPFNRWEAGQRLARRVILANIAR 575 (863)
T ss_pred CCcceEEEEccCEEEEEEcCCCCCCeeeecCCCCceEEEeCCCCH-HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 124577888877776553 22347788888888888776543 344455555556666666555444322221
Q ss_pred -HcCC-c-chhhhhHhhhhhhcCCCchhHHHHH-------HHHHHHHhhccC-------CchhHHHHHHHHHHHHHHHhh
Q psy7254 400 -RAGL-V-NATVPLELSTYLLKEKDYVPWATAL-------EHFQHWSTSLSE-------ASPYRLFEQYVKKLLTPISHH 462 (567)
Q Consensus 400 -~ag~-l-~~~~~l~l~~yL~~E~~y~~W~~a~-------~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 462 (567)
..|. + --..+++....+..+.+--|+-.|. ..|...+..... ......+..-++..+..+|++
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~ 655 (863)
T TIGR02414 576 AQGGEELPVDPAFIDALGKLLNDPHLDAAFKALLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDA 655 (863)
T ss_pred hhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1232 1 1345677777766666666666654 333333322110 112223333344445566665
Q ss_pred cccc----c-CCchHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhccCCCCCcchhhhheeheeecCC---HHHHHHH
Q psy7254 463 IGWE----D-TGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGG---VKEWQNC 534 (567)
Q Consensus 463 lg~~----~-~~s~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~g~---~~~w~~l 534 (567)
+--. . .+..-.+.||...|.++|..+.+...+.|.+.|++-. ..--|-..+...+..++ ++..+..
T Consensus 656 ~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~------~mtd~~~al~~l~~~~~~~~~~~l~~f 729 (863)
T TIGR02414 656 LQENGPYSVDPAAAGRRALRNACLSYLSAADDAEIRNLALEQFKSAD------NMTDRLAALSALVHFESDFRERALAAF 729 (863)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 5311 1 2335578999999999999999999999999998631 11122222222222221 2345555
Q ss_pred HHHHhcCCCHHHHHHHHHHh
Q psy7254 535 WAKYNSTRVPSERKLLLKVL 554 (567)
Q Consensus 535 ~~~y~~~~~~~ek~~ll~aL 554 (567)
+++++.....-+|=-.+.|-
T Consensus 730 ~~~~~~~~lv~~kwf~~qa~ 749 (863)
T TIGR02414 730 YQKWKDDPLVMDKWFALQAT 749 (863)
T ss_pred HHHHCCCchhHHHHHHHHhC
Confidence 66666666666665555553
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.3e-52 Score=472.23 Aligned_cols=510 Identities=15% Similarity=0.144 Sum_probs=360.3
Q ss_pred CEEEEcC-CC-eEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeec----ccCCeeEEEEeCCC
Q psy7254 1 MSIFRDR-FH-ISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV----TAKGVSVSVYAPPD 74 (567)
Q Consensus 1 i~i~~p~-~~-~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~----~~~~~~i~v~~~p~ 74 (567)
|+|++|+ .| +++|||++++.. ...+|+++++|+.++||||||+||+||+|+.++.. ..+++++++|++|+
T Consensus 148 itI~~p~~~~~~~lSNG~l~~~~----~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~ 223 (875)
T PRK14015 148 VRIEADKAKYPVLLSNGNLVESG----ELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPG 223 (875)
T ss_pred EEEEEccccCeEEecCCccccce----eccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCC
Confidence 5899999 58 689999998775 45688999999999999999999999999987752 22459999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHH
Q psy7254 75 LLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHE 154 (567)
Q Consensus 75 ~~~~~~~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 154 (567)
...+++++++.++++|++||++||+|||++|+++|++|+|..|||||||+++|++..++.++...+...+..+..+||||
T Consensus 224 ~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHE 303 (875)
T PRK14015 224 NLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHE 303 (875)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776666777889999999
Q ss_pred hhhcccccCCc---cccccccccccCccccCchhhhhhhHhhhhhhc------------------c-----c--------
Q psy7254 155 LAHQVSVVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHY------------------Q-----S-------- 200 (567)
Q Consensus 155 laHqW~~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~------------------~-----p-------- 200 (567)
+|||| |||+ +||++ +|| |||| |+|++..+.+.. + |
T Consensus 304 laHqW--FGNlVT~~~W~d-LWL-------nEGF-Aty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~ 372 (875)
T PRK14015 304 YFHNW--TGNRVTCRDWFQ-LSL-------KEGL-TVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD 372 (875)
T ss_pred HHHHH--HhCcceecchhh-hhh-------hhHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc
Confidence 99999 9999 99999 999 9999 999975543321 0 1
Q ss_pred ---chhhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccch----hhccc-
Q psy7254 201 ---QNGIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDL----NGAKR- 270 (567)
Q Consensus 201 ---~~~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~----~~~~~- 270 (567)
++...|+.++|.||+++ ||+..+ |+ +.|+++|+.|+.+|++ ++++++|| +++++
T Consensus 373 ~~~~i~~~f~~~~Y~KGA~vLrMLr~~l--Gd------e~F~~gLr~Yl~~~~~--------~~at~~Df~~ale~asg~ 436 (875)
T PRK14015 373 SYIEINNFYTATVYEKGAEVIRMLHTLL--GE------EGFRKGMDLYFERHDG--------QAVTCEDFVAAMEDASGR 436 (875)
T ss_pred chhhHHhcccchhhhHHHHHHHHHHHHh--CH------HHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhCC
Confidence 23456888999999998 999999 99 8899999999999999 99999999 44444
Q ss_pred ---ccccccccCCCcceEEEec---------ceEEeeceeeecCCCCCccCCCCcEEEEEEEE----ccCCcc-------
Q psy7254 271 ---PVIPIATSGEVFPWNNVRL---------PTFAHPLRYVINIHPNLTTLDVKVVYHFKKIR----NLGGYK------- 327 (567)
Q Consensus 271 ---~~~~~W~~q~G~P~v~v~~---------~~~i~Q~rf~~~~~~~~~~~~~~~~W~i~~~~----~~~~~~------- 327 (567)
+|+ +|+.|+|+|+|+|++ .++++|.... .+. .+....|+||+.. ..+...
T Consensus 437 DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~---~~~---~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~ 509 (875)
T PRK14015 437 DLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPP---TPG---QPEKQPLHIPVAIGLLDPDGKELPLQLEGE 509 (875)
T ss_pred CHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCC---CCC---CCCCceEEEEEEEEEEcCCCceeeccccCC
Confidence 554 899999999999976 2456665321 111 1234568855442 222211
Q ss_pred -cceEEEecCceeEEeCCC--CCceEEEcCCCeeEEEeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHc---
Q psy7254 328 -EQEIVWMNMTDVTFKLPN--SIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRA--- 401 (567)
Q Consensus 328 -~~~~~~~~~~~~~~~l~~--~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~la~a--- 401 (567)
...+++++.++.++.+++ ..-.+.++.+.+.+=++.|+-.. +.|+-+++.+++.++.-+-+|-|-.-.-+...
T Consensus 510 ~~~~~l~l~~~~q~f~f~~~~~~p~~s~~r~fsapv~~~~~~~~-~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~ 588 (875)
T PRK14015 510 PVERVLELTEAEQTFTFENVAERPVPSLLRGFSAPVKLEYDYSD-EDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARH 588 (875)
T ss_pred ccceEEEEcCCeeEEEEcCCCCCceEEecCCCCCcEEEeCCCCH-HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhc
Confidence 134678888887776653 22347888888888888876433 44555565556667666666554443332221
Q ss_pred CC-cc-hhhhhHhhhhhhcCCCchhHHHHH-------HHHHHHHhhccCC-------chhHHHHHHHHHHHHHHHhhccc
Q psy7254 402 GL-VN-ATVPLELSTYLLKEKDYVPWATAL-------EHFQHWSTSLSEA-------SPYRLFEQYVKKLLTPISHHIGW 465 (567)
Q Consensus 402 g~-l~-~~~~l~l~~yL~~E~~y~~W~~a~-------~~l~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~lg~ 465 (567)
|. +. -..+++.++.+..+.+--|+-.|. ..|...+...... .....+..-++..+..+|+++--
T Consensus 589 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~ 668 (875)
T PRK14015 589 GQPLSLDEALIDAFRAVLLDESLDPAFAAELLTLPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQT 668 (875)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 11 234667777666556666666654 3333332221110 11222223333344455555422
Q ss_pred ----cc-CCchHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhccCCCCCcchhhhheeheeecCC---HHHHHHHHHH
Q psy7254 466 ----ED-TGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGG---VKEWQNCWAK 537 (567)
Q Consensus 466 ----~~-~~s~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~g~---~~~w~~l~~~ 537 (567)
.. .+..-.+.||...|.+.|..+.+...+.|.+.|+.-. ..--|-..+...+..+. ++.-+..+++
T Consensus 669 ~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~------~mtd~~~al~~l~~~~~~~~~~~l~~f~~~ 742 (875)
T PRK14015 669 DGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAELAEAQFDQAD------NMTDRLAALSALVNADLPERDEALADFYDR 742 (875)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhCC------CHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 11 2345678999999999999999988888988888531 11122222222222211 2345555666
Q ss_pred HhcCCCHHHHHHHHHHhC
Q psy7254 538 YNSTRVPSERKLLLKVLG 555 (567)
Q Consensus 538 y~~~~~~~ek~~ll~aL~ 555 (567)
++.....-+|=-.+.|.+
T Consensus 743 ~~~~~lv~~kwf~~qa~~ 760 (875)
T PRK14015 743 WKDDPLVMDKWFALQATS 760 (875)
T ss_pred hCCCchhhHHHHHHHhCC
Confidence 666666666666666543
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=1.6e-43 Score=387.28 Aligned_cols=239 Identities=18% Similarity=0.204 Sum_probs=200.0
Q ss_pred CEEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeecccCCeeEEEEeCCCCchhHH
Q psy7254 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK 80 (567)
Q Consensus 1 i~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~~~~i~v~~~p~~~~~~~ 80 (567)
++|++| ++|++||...... .++..+++|++++||||||+||+||+|+... .|.++++|++|+....++
T Consensus 153 ~~I~~P--~~av~sg~~~~~~------~~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~ 220 (601)
T TIGR02411 153 AEVESP--LPVLMSGIPDGET------SNDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQ 220 (601)
T ss_pred EEEeeC--cceeccCCccccc------cCCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHH
Confidence 578999 8998776554432 2345688999999999999999999998653 467899999999999999
Q ss_pred HHHH-HHHHHHHHHHHHhCCCCCCCCcceeec-CCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhc
Q psy7254 81 FALN-TSTHMMDFYEEFFGVPYPLPKQDLIAI-PDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158 (567)
Q Consensus 81 ~~l~-~~~~~l~~~e~~fg~~YP~~k~d~v~~-p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 158 (567)
+++. .++++|+++|+++| |||++|+|+|++ |+|+.||||||| ++|.+..++.+.. ....+||||+|||
T Consensus 221 ~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHq 290 (601)
T TIGR02411 221 YEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHS 290 (601)
T ss_pred HHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhh
Confidence 9998 99999999999877 999999999987 689999999999 5788887775421 2357999999999
Q ss_pred ccccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc-----------------------------------
Q psy7254 159 VSVVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS----------------------------------- 200 (567)
Q Consensus 159 W~~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p----------------------------------- 200 (567)
| |||+ +||+| +|| |||| |+|++.+++++++|
T Consensus 291 W--fGNlVT~~~W~d-~WL-------nEGf-aty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (601)
T TIGR02411 291 W--SGNLVTNCSWEH-FWL-------NEGW-TVYLERRIVGRLYGEKTRHFSALIGWGELQESVKTLGEDPEYTKLVVDL 359 (601)
T ss_pred c--cCceeecCCchH-HHH-------HhhH-HHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHhhcCCCCCCcccccC
Confidence 9 9999 99999 999 9999 99999876654422
Q ss_pred ---chhhcccccccccchhh--hccchhhhH-HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccch----hhc--
Q psy7254 201 ---QNGIHKRSLYEHNGVAV--CSQNRALII-ASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDL----NGA-- 268 (567)
Q Consensus 201 ---~~~~~~~~i~Y~Kg~~v--ml~~~~~~G-~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~----~~~-- 268 (567)
++...|+.++|.||+++ ||+..+ | + +.|+++|+.|+++|++ ++++++|| .+.
T Consensus 360 ~~~dp~~~f~~i~Y~KGa~~L~mL~~~l--G~~------~~F~~~lr~Yl~~~~~--------~s~~t~df~~~l~~~~~ 423 (601)
T TIGR02411 360 KDNDPDDAFSSVPYEKGFNFLFYLEQLL--GGP------AVFDPFLKHYFKKFAY--------KSLDTYQFKDALYEYFK 423 (601)
T ss_pred CCCChhhhccccchhhHHHHHHHHHHHh--CCH------HHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhh
Confidence 23456889999999998 999999 9 8 8899999999999999 99999999 211
Q ss_pred ---c----ccc-ccccccCCCcceEEEe
Q psy7254 269 ---K----RPV-IPIATSGEVFPWNNVR 288 (567)
Q Consensus 269 ---~----~~~-~~~W~~q~G~P~v~v~ 288 (567)
. ..+ |+.|++++|+|.+.+.
T Consensus 424 ~~~~~~~l~~~~~~~Wl~~~G~P~~~~~ 451 (601)
T TIGR02411 424 DTGKVDKLNAVDWDTWLYSPGLPPVKPN 451 (601)
T ss_pred hccccchhhhhhHHHHhcCCCCCCcCCC
Confidence 1 134 8999999999986654
No 7
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=4e-41 Score=346.79 Aligned_cols=214 Identities=41% Similarity=0.800 Sum_probs=187.6
Q ss_pred eEEEcCCCeeEEEeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHcCCcchhhhhHhhhhh-hcCCCchhHHH
Q psy7254 349 WIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYL-LKEKDYVPWAT 427 (567)
Q Consensus 349 wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~la~ag~l~~~~~l~l~~yL-~~E~~y~~W~~ 427 (567)
||++|.++.|||||+||+++|+.|+++|..++ ||+.+|++|++|+|+|+++|.++++++|+++.|+ ++|++|.||..
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~--l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~ 78 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNH--LSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWST 78 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHG--S-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHH
Confidence 99999999999999999999999999998766 9999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhcc-CCchhH-HHHHHHHHHHHHHHhhcccccC--CchHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q psy7254 428 ALEHFQHWSTSLS-EASPYR-LFEQYVKKLLTPISHHIGWEDT--GSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGW 503 (567)
Q Consensus 428 a~~~l~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~lg~~~~--~s~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~ 503 (567)
++..|..+...+. ..+... .|++|+++++.|.++++||++. +++....+|..|+.+|| |+++|+++|.++|++|
T Consensus 79 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~ 156 (324)
T PF11838_consen 79 ALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAW 156 (324)
T ss_dssp HHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Confidence 9988887775544 234444 4999999999999999999984 89999999999999999 9999999999999999
Q ss_pred hcc-CC---CCCcchhhhheeheeecCCHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChhHHhhc
Q psy7254 504 MEK-GF---RIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566 (567)
Q Consensus 504 ~~~-~~---~ip~dlr~~Vyc~gi~~g~~~~w~~l~~~y~~~~~~~ek~~ll~aL~ct~d~~ll~r~ 566 (567)
+.+ .. .||||+|.+|||+++++|+.++|++++++|++++++.||..++.||||++||++++++
T Consensus 157 ~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 157 LDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 987 33 8999999999999999999999999999999999999999999999999999999874
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=1.9e-41 Score=358.14 Aligned_cols=185 Identities=37% Similarity=0.623 Sum_probs=166.8
Q ss_pred CEEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeecccCCeeEEEEeCCCCchhHH
Q psy7254 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK 80 (567)
Q Consensus 1 i~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~~~~i~v~~~p~~~~~~~ 80 (567)
++|++|++++|+|||++.+.. ..++|+++++|..|+|||+|++||+||+|..++....+|+++++|++|+..+.++
T Consensus 153 ~~i~~p~~~~~~sng~~~~~~----~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 228 (390)
T PF01433_consen 153 LTITHPKDYTALSNGPLEEEE----SNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQ 228 (390)
T ss_dssp EEEEEETTTEEEESSEEEEEE----EETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHH
T ss_pred Eeeeccccceeeccccccccc----cccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHH
Confidence 589999999999999999887 5678999999999999999999999999999887665579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhccc
Q psy7254 81 FALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVS 160 (567)
Q Consensus 81 ~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~ 160 (567)
++++.+++++++|+++||+|||++|+|+|++|+|..|||||||+|+|+|..+++++..++...+..+..+||||+||||
T Consensus 229 ~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW- 307 (390)
T PF01433_consen 229 FALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW- 307 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHhhHHHHHHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred ccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc
Q psy7254 161 VVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS 200 (567)
Q Consensus 161 ~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p 200 (567)
|||+ +||+| +|| +||| |+|++++++++.+|
T Consensus 308 -fGn~vt~~~w~d-~WL-------~Eg~-a~y~~~~~~~~~~~ 340 (390)
T PF01433_consen 308 -FGNLVTPKWWSD-LWL-------NEGF-ATYLEYLILEKLFG 340 (390)
T ss_dssp -BTTTEEESSGGG-HHH-------HHHH-HHHHHHHHHHHHHG
T ss_pred -hccCCccccchh-hhH-------HHHH-HHHHHHHhHhhccC
Confidence 9999 99999 999 9999 99999999888754
No 9
>KOG1047|consensus
Probab=99.97 E-value=1.1e-31 Score=273.85 Aligned_cols=240 Identities=20% Similarity=0.204 Sum_probs=200.9
Q ss_pred EEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeecccCCeeEEEEeCCCCchhHHH
Q psy7254 2 SIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKF 81 (567)
Q Consensus 2 ~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~~~~i~v~~~p~~~~~~~~ 81 (567)
.|.+|.++++++++....+. ..++|.+.+.|++-.|+|+|++||++|+....+. |..-+||+.|...+.+++
T Consensus 159 ~v~vp~~l~a~mSai~~~~~----~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI----gpRs~VwaEp~~~~a~~~ 230 (613)
T KOG1047|consen 159 EVEVPMGLTALMSAIPAGEK----PGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREI----GPRSRVWAEPCLLDACQE 230 (613)
T ss_pred EEEcCCcceeeeeccccccC----CCCCCcceEEEEeccCchhhhHHHhhcccccccc----CCccceecchhhhHHHHH
Confidence 57899999999998776665 5667889999999999999999999999986553 566899999999999888
Q ss_pred HHH-HHHHHHHHHHHHhCCCCCCCCcceeecC-CCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 82 ALN-TSTHMMDFYEEFFGVPYPLPKQDLIAIP-DFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 82 ~l~-~~~~~l~~~e~~fg~~YP~~k~d~v~~p-~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
-+. .+.++|..-|+.+| ||++..+|+|++| .|+.|||||+.|.+...+ ||-.. +....+|||||||-|
T Consensus 231 ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGD--------rsl~~vIaHEIAHSW 300 (613)
T KOG1047|consen 231 EFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGD--------RSLVDVIAHEIAHSW 300 (613)
T ss_pred HHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCC--------cchhhHHHHHhhhhh
Confidence 887 99999999999999 9999999999987 599999999987665544 44322 334789999999999
Q ss_pred cccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc------------------------------------
Q psy7254 160 SVVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS------------------------------------ 200 (567)
Q Consensus 160 ~~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p------------------------------------ 200 (567)
|||+ ..|++ .|| |||| ++|+|..+...+++
T Consensus 301 --tGNlVTN~sWeh-fWL-------NEGf-TvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~ 369 (613)
T KOG1047|consen 301 --TGNLVTNASWEH-FWL-------NEGF-TVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLE 369 (613)
T ss_pred --cccccccCccch-hhh-------cccc-hhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhcc
Confidence 9999 99999 999 9999 99999887766632
Q ss_pred --chhhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcCCccchhh---------
Q psy7254 201 --QNGIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNG--------- 267 (567)
Q Consensus 201 --~~~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~yl~~~~~~~~~~~~~~~~~~~d~~~--------- 267 (567)
+....|+.+.|.||..+ -|++.. |.. ..|...|+.|+.++++ +.+.+.||.+
T Consensus 370 ~~dPDdafs~VpYeKG~~ll~~Le~~l--G~~-----~~Fd~FLr~Yv~kfa~--------ksI~t~dfld~Lye~fpe~ 434 (613)
T KOG1047|consen 370 NVDPDDAFSQVPYEKGFALLFYLEQLL--GDP-----TRFDPFLRAYVHKFAF--------KSILTQDFLDFLYEYFPEL 434 (613)
T ss_pred CCChHHhhhcCchhhhhHHHHHHHHHh--CCh-----hhHHHHHHHHHHHhcc--------ceecHHHHHHHHHHhCcch
Confidence 55678999999999886 555555 642 6789999999999999 9999998811
Q ss_pred -----cccccccccccCCCcceE
Q psy7254 268 -----AKRPVIPIATSGEVFPWN 285 (567)
Q Consensus 268 -----~~~~~~~~W~~q~G~P~v 285 (567)
..+-.++.|++.+|.|..
T Consensus 435 kk~dil~~vd~~~Wl~~~G~Pp~ 457 (613)
T KOG1047|consen 435 KKKDILDEVDWDLWLNSPGMPPP 457 (613)
T ss_pred hhhhhhccccHHHHhcCCCCCCC
Confidence 123678899999999953
No 10
>KOG1932|consensus
Probab=99.67 E-value=2.3e-16 Score=173.20 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=155.1
Q ss_pred CEEEEcCCCeEeecCCcccccccccccCCCeEEEEEecCCCCchhhhhheecccceeeecccCCeeEEEEeCCCCchhHH
Q psy7254 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK 80 (567)
Q Consensus 1 i~i~~p~~~~alsn~~~~~~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~~~~i~v~~~p~~~~~~~ 80 (567)
+..++|++++++|+|.+.++.. ..+.+.++.+|..|.||++.-++|+||+|+..... .+++|..++-|+..+..+
T Consensus 203 Leftvp~~~~av~~geLl~~v~---~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P--~~~~i~~f~LP~~~~~v~ 277 (1180)
T KOG1932|consen 203 LEFTVPKNLVAVSCGELLEQVE---TPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEP--SMIDITHFCLPGLEPLVK 277 (1180)
T ss_pred EEEEecccceeccchhhhheee---cccccccEEEEEEeccCCccccceeeccccccCCC--ccCcceeEecCcchHHhh
Confidence 4689999999999999988763 23567789999999999999999999999988543 588999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhccc
Q psy7254 81 FALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVS 160 (567)
Q Consensus 81 ~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~ 160 (567)
...-...++++|||+.||..|||+-+.+|++|.-..--|....|.+++ +.+||+...- .........+|-.+|-||
T Consensus 278 nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~s-t~lLy~~~iI--Dq~~~tr~~La~aLA~Q~- 353 (1180)
T KOG1932|consen 278 NTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFS-TSLLYSKNII--DQTFLTRRKLAWALASQW- 353 (1180)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeee-ccccchHhhh--hHHHHHHHHHHHHHHHhh-
Confidence 999999999999999999889999999999997655566777777776 5578887543 334455678999999999
Q ss_pred ccCCc---cccccccccccCccccCchhhhhhhHhhhhhhccc
Q psy7254 161 VVGSA---KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQS 200 (567)
Q Consensus 161 ~fGnl---~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~p 200 (567)
||-. ..|+| .|| -+|+ |.|+..+++.+..+
T Consensus 354 -fg~yIsp~~wsD-~Wl-------~~Gi-agYl~~l~~kk~lG 386 (1180)
T KOG1932|consen 354 -FGVYISPVDWSD-FWL-------LKGI-AGYLTGLFVKKFLG 386 (1180)
T ss_pred -hEEEeeccchhh-hHH-------HHhH-HHHHHHHHHHHHhC
Confidence 9987 89999 999 9999 99999999988855
No 11
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.19 E-value=7e-07 Score=78.22 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhhhcccccCCc-c--ccccccccccCccccCchhhhhhhHhhhhhhcc------------c---ch--
Q psy7254 143 GHNWVAVVVAHELAHQVSVVGSA-K--DVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQ------------S---QN-- 202 (567)
Q Consensus 143 ~~~~~~~~iaHElaHqW~~fGnl-~--~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~~------------p---~~-- 202 (567)
....+..+++||++|+| +++. . .... .|+ +||+ |+|++........ + ++
T Consensus 21 ~~~~~~~~l~HE~~H~~--~~~~~~~~~~~~-~W~-------~EG~-A~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (128)
T PF13485_consen 21 DEDWLDRVLAHELAHQW--FGNYFGGDDNAP-RWF-------NEGL-AEYVEGRIEDEFDEDLKQAIESGSLPPLEPLNS 89 (128)
T ss_pred CHHHHHHHHHHHHHHHH--HHHHcCCCccCc-hHH-------HHHH-HHHHhcCccchhHHHHHHHHHcCCCCChHHHhc
Confidence 34556689999999999 9998 3 6888 999 9999 9999964221110 1 11
Q ss_pred ----hhcccccccccchhh--hccchhhhHHHHHHHHHHHHHHHHHh
Q psy7254 203 ----GIHKRSLYEHNGVAV--CSQNRALIIASVVLSILFLSSLIIAY 243 (567)
Q Consensus 203 ----~~~~~~i~Y~Kg~~v--ml~~~~~~G~~~~~~~~~f~~~l~~y 243 (567)
...+....|.+|.++ +|.... |. +.|.+.+++|
T Consensus 90 ~~~~~~~~~~~~Y~~~~~~~~~L~~~~--G~------~~~~~~l~~~ 128 (128)
T PF13485_consen 90 SFDFSWEDDSLAYYQGYLFVRFLEEKY--GR------EKFKAFLREY 128 (128)
T ss_pred cccccccccccHHHHHHHHHHHHHHHH--HH------HHHHHHHHhC
Confidence 233455689999876 454444 77 6677777654
No 12
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.95 E-value=4.7e-05 Score=79.64 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=75.8
Q ss_pred CCeeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCchhhhhcccceecccccccCCCCCch
Q psy7254 63 KGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAI-PDFGTGAMENWGLITYRETSILYDEQETSA 141 (567)
Q Consensus 63 ~~~~i~v~~~p~~~~~~~~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~-p~~~~game~~gli~~~e~~ll~~~~~~~~ 141 (567)
.+..+.++..-. ....+...+.++++++.=.+.|| +-||.++.+++- -+-..||||+-- .+.+.++...-+.
T Consensus 168 ~ph~~~~~g~~p-~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~-----St~l~~~r~~~~~ 240 (558)
T COG3975 168 APHTIALRGELP-NFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRR-----STALIYDRFGFTD 240 (558)
T ss_pred CceeEEEeeccc-cccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecc-----ccccccccccccc
Confidence 334455554321 34566777888899999999999 789999887753 344567888653 3334444321112
Q ss_pred hh-HHHHHHHHHHHhhhcccccCCc----ccc----------ccccccccCccccCchhhhhhhHhhhh
Q psy7254 142 SG-HNWVAVVVAHELAHQVSVVGSA----KDV----------NSVLWKKQSNVKMNDHDVDDVAFLTGV 195 (567)
Q Consensus 142 ~~-~~~~~~~iaHElaHqW~~fGnl----~~w----------~~~~WL~~~~~~~~Egf~a~y~~~~~~ 195 (567)
.. .+....+++||..|-| -+-- .-| .- +|+ .||| ++|+..+..
T Consensus 241 ~~ky~~~l~llsHEyfH~W--NvKrIrpa~l~p~~~d~en~t~~-lW~-------~EG~-T~Yy~~ll~ 298 (558)
T COG3975 241 QDKYQDLLGLLSHEYFHAW--NVKRIRPAALEPFNLDKENYTPL-LWF-------SEGF-TSYYDRLLA 298 (558)
T ss_pred hhHHHHHHHHHHHHHHHhc--cceeccccccCCccccccCCCcc-eee-------ecCc-hHHHHHHHH
Confidence 22 4666789999999999 3322 333 45 999 9999 999887654
No 13
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=93.80 E-value=0.018 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.4
Q ss_pred HHHHHHhhhcccccCCc------cccccccccccCccccCchhhhhhhHhhhh
Q psy7254 149 VVVAHELAHQVSVVGSA------KDVNSVLWKKQSNVKMNDHDVDDVAFLTGV 195 (567)
Q Consensus 149 ~~iaHElaHqW~~fGnl------~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~ 195 (567)
.+++||.+||= .-|. ..| - .|+ .||| |+|+|....
T Consensus 3 ~T~~HEa~HQl--~~N~Gl~~r~~~~-P-~Wv-------~EGl-A~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQL--AFNTGLHPRLADW-P-RWV-------SEGL-ATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHH--HHHccccccCCCC-c-hHH-------HHhH-HHHcCCCcc
Confidence 58999999999 8887 332 3 799 9999 999996654
No 14
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=92.81 E-value=0.29 Score=50.44 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=72.1
Q ss_pred cCCeeEEEEeCCC-----Cc--hhHHHHHHHHH---HHHHHHHHHhCCCC-----CCCCcc------eeec---CCCC-c
Q psy7254 62 AKGVSVSVYAPPD-----LL--PQAKFALNTST---HMMDFYEEFFGVPY-----PLPKQD------LIAI---PDFG-T 116 (567)
Q Consensus 62 ~~~~~i~v~~~p~-----~~--~~~~~~l~~~~---~~l~~~e~~fg~~Y-----P~~k~d------~v~~---p~~~-~ 116 (567)
.+|..+.+|...+ .. ..++...+.-. ++.+...+.||-|+ ..+|++ +|.+ |+-. .
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 4788899998655 22 12222222222 35566667888773 344544 5554 2111 1
Q ss_pred h----------------hhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcccccCCc-------cccccccc
Q psy7254 117 G----------------AMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSA-------KDVNSVLW 173 (567)
Q Consensus 117 g----------------ame~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~~fGnl-------~~w~~~~W 173 (567)
| .-.|.|.++|-....++-... .....+..++|||+-|+= =-+. +.-.| +|
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmI--nfy~~~v~~g~~~~~d-tW 169 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMI--NFYQRGVLHGKQYAMD-TW 169 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHH--HHHHHHHhcCCCcccc-cH
Confidence 1 233445555554443332211 124567889999999996 1121 23468 99
Q ss_pred cccCccccCchhhhhhhHhhhhhhccc
Q psy7254 174 KKQSNVKMNDHDVDDVAFLTGVNHYQS 200 (567)
Q Consensus 174 L~~~~~~~~Egf~a~y~~~~~~~~~~p 200 (567)
| |||+ +.-+|.++..+..|
T Consensus 170 L-------nE~l-S~~aEdl~s~~~~~ 188 (366)
T PF10460_consen 170 L-------NEML-SMSAEDLYSSKIDP 188 (366)
T ss_pred H-------HHHH-HHHHHHHHhcCCCc
Confidence 9 9999 99999988776643
No 15
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=92.42 E-value=0.062 Score=46.51 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcccccCCc--------------cccccccccccCccccCchhhhhhhHhhhhhh
Q psy7254 147 VAVVVAHELAHQVSVVGSA--------------KDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNH 197 (567)
Q Consensus 147 ~~~~iaHElaHqW~~fGnl--------------~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~ 197 (567)
...++|||..|.| -|-. ..-+. +|+ -||| ++|++.+....
T Consensus 4 ~l~l~sHEffH~W--nvkrirP~~l~p~dy~~~~~t~~-LWv-------~EG~-T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSW--NVKRIRPAELGPFDYEKPNYTEL-LWV-------YEGF-TSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccc--cceEeccccccCCCCCCCCCCCC-Eee-------eeCc-HHHHHHHHHHH
Confidence 3468999999999 5432 33455 899 9999 99999776643
No 16
>PRK04860 hypothetical protein; Provisional
Probab=91.01 E-value=0.25 Score=45.01 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhh--hcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 82 ALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME--NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 82 ~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
+...+...+..-+++||.|+|.|++.+=. .-..||+. ..+-|.|. |..-.......+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~N-------p~ll~~~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLN-------PVLLLENQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeC-------HHHHhhCcHHHHHhHHHHHHHHHH
Confidence 45566777888889999999887764332 11224432 22233333 222112245677899999999999
No 17
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=89.85 E-value=0.27 Score=49.93 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhcccccCCccccccccccccCccccCchhhhhhhHhhhhhhc
Q psy7254 144 HNWVAVVVAHELAHQVSVVGSAKDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHY 198 (567)
Q Consensus 144 ~~~~~~~iaHElaHqW~~fGnl~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~ 198 (567)
...++.+|-||+|||= +++ ..+..+||+| ||+.+..++...
T Consensus 162 ~~~LA~LIfHELaHq~------------~Yv-~~dt~FNEsf-AtfVe~~G~~~w 202 (337)
T PF10023_consen 162 DGELARLIFHELAHQT------------LYV-KGDTAFNESF-ATFVEREGARRW 202 (337)
T ss_pred chHHHHHHHHHHhhce------------eec-CCCchhhHHH-HHHHHHHHHHHH
Confidence 3578999999999998 333 2233359999 999998887665
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=88.03 E-value=0.97 Score=42.80 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCch--hhh---hcccceeccccccc-CCCCCchhhHHHHHHHHHHHhhhc
Q psy7254 85 TSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTG--AME---NWGLITYRETSILY-DEQETSASGHNWVAVVVAHELAHQ 158 (567)
Q Consensus 85 ~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~g--ame---~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 158 (567)
.+.+++....+.| |.+.+++.+.|.-+.+ -++ ..|-..+....+++ -+. ......+..++|||+.|-
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 4455666666655 4568888755532222 122 23333444444444 222 223457889999999999
Q ss_pred ccccCCccccc-------cccccccCccccCchhhhhhhHhhhhhh
Q psy7254 159 VSVVGSAKDVN-------SVLWKKQSNVKMNDHDVDDVAFLTGVNH 197 (567)
Q Consensus 159 W~~fGnl~~w~-------~~~WL~~~~~~~~Egf~a~y~~~~~~~~ 197 (567)
+ ++... .|+ | .-+ .||+ |.+++......
T Consensus 77 ~-r~~~~-~~~~~~~TLld-~~I-------~EGl-Ae~f~~~~~g~ 111 (195)
T PF10026_consen 77 C-RYEQI-GWDPEDTTLLD-SLI-------MEGL-AEYFAEELYGE 111 (195)
T ss_pred H-HHhcc-CCCCCCCCHHH-HHH-------HhhH-HHHHHHHHcCC
Confidence 6 13322 121 2 234 8999 99987665443
No 19
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=86.24 E-value=0.49 Score=42.59 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=33.7
Q ss_pred HHHHHHH-HHhCCCCCCCCcceeecCCC--Cchhhhh-cccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 88 HMMDFYE-EFFGVPYPLPKQDLIAIPDF--GTGAMEN-WGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 88 ~~l~~~e-~~fg~~YP~~k~d~v~~p~~--~~game~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
+.++.++ .+|+-++|-+++..- ... .+|.-.. .+.|.++...+ .......+..+|.||++|.+
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i~w~--~r~~~~~G~~~~~~~~I~ln~~l~-------~~~~~~~l~~~l~HEm~H~~ 71 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKVVWN--KRLRKTGGRCLLKSAEIRLNPKLL-------TENGRDRLRETLLHELCHAA 71 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEe--hhhhhhhHHhhcCCCEEEeCHHHH-------hhccHHHHHhhHHHHHHHHH
Confidence 4444455 788878887633221 111 1233222 33444443321 11223567789999999999
No 20
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=86.17 E-value=0.51 Score=45.59 Aligned_cols=115 Identities=20% Similarity=0.281 Sum_probs=67.8
Q ss_pred EeCCCCchhHHHHHHHHHHHHHHHHHHhCCCC------------CCCCcceeecCCCCch----hhhhcccceeccc---
Q psy7254 70 YAPPDLLPQAKFALNTSTHMMDFYEEFFGVPY------------PLPKQDLIAIPDFGTG----AMENWGLITYRET--- 130 (567)
Q Consensus 70 ~~~p~~~~~~~~~l~~~~~~l~~~e~~fg~~Y------------P~~k~d~v~~p~~~~g----ame~~gli~~~e~--- 130 (567)
...|..-+.+..-|..+.++-.|-++-++.|= |+-...+.+.|.++.- -.--.|++.|+--
T Consensus 71 I~dp~~d~rLr~rL~~A~aiR~fAseeL~LPDN~SYR~YadIgRp~vvwnVFAaPelSl~p~TwCFpv~GCV~YRGYysr 150 (376)
T COG4324 71 IRDPSTDERLRARLTSASAIRRFASEELALPDNSSYRSYADIGRPDVVWNVFAAPELSLTPITWCFPVFGCVPYRGYYSR 150 (376)
T ss_pred hhCCCccHHHHHHHhhHHHHHHHHHHhccCCCCcceeeeeccCCcceeeeeccCcccccceeeeeeeeecceecccchhh
Confidence 33455545555666777777777777776542 4444555666665421 1223445554411
Q ss_pred ----------------------------ccccCCCCCchh--hHHHHHHHHHHHhhhcccccCCccccccccccccCccc
Q psy7254 131 ----------------------------SILYDEQETSAS--GHNWVAVVVAHELAHQVSVVGSAKDVNSVLWKKQSNVK 180 (567)
Q Consensus 131 ----------------------------~ll~~~~~~~~~--~~~~~~~~iaHElaHqW~~fGnl~~w~~~~WL~~~~~~ 180 (567)
.-+-||-.++.. ....++.+|-||+|||= |.-- +| .=+
T Consensus 151 ~aA~a~Aa~lraqG~DVyV~Gv~AYSTLGwFdDPlLstmlr~dd~~lA~LIFHELAHQk--~Y~~---~D-tAF------ 218 (376)
T COG4324 151 KAAAASAAELRAQGLDVYVSGVTAYSTLGWFDDPLLSTMLRQDDTYLASLIFHELAHQK--IYVN---ND-TAF------ 218 (376)
T ss_pred hhHHHhHHHHHhcCCceeeecccceecccccccHHHHHHhcCChHHHHHHHHHHHhhhe--Eeec---Cc-chH------
Confidence 011122212111 24567899999999998 6532 45 556
Q ss_pred cCchhhhhhhHhhhhhhc
Q psy7254 181 MNDHDVDDVAFLTGVNHY 198 (567)
Q Consensus 181 ~~Egf~a~y~~~~~~~~~ 198 (567)
||+| |+..|..++.+.
T Consensus 219 -NEsF-AtaVEt~Gvr~W 234 (376)
T COG4324 219 -NESF-ATAVETSGVRKW 234 (376)
T ss_pred -hHHH-HHHHHHHhHHHH
Confidence 9999 999999888765
No 21
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=85.42 E-value=1.5 Score=41.73 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhccc
Q psy7254 81 FALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVS 160 (567)
Q Consensus 81 ~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~ 160 (567)
.+.+...+.+..|++.+|+++ +++.+=-.-. ..|....-|.|+|.-..+.+++ ..+..+|+||+||--
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~- 176 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLR- 176 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhc-
Confidence 556677788888899998743 4443332222 2455566678888766555443 457789999999998
Q ss_pred ccCCc--ccccc
Q psy7254 161 VVGSA--KDVNS 170 (567)
Q Consensus 161 ~fGnl--~~w~~ 170 (567)
.-|- +.|.-
T Consensus 177 -~~nHs~~Fw~~ 187 (205)
T PF01863_consen 177 -HPNHSKRFWAL 187 (205)
T ss_pred -cCCCCHHHHHH
Confidence 7665 44443
No 22
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=84.14 E-value=58 Score=34.06 Aligned_cols=255 Identities=12% Similarity=0.079 Sum_probs=110.7
Q ss_pred ceEEeeceeeecCCCCCccCCCCcEEEEEEE----EccCCccc---ceEEEecCceeEEeCCC--CCceEEEcCCCeeEE
Q psy7254 290 PTFAHPLRYVINIHPNLTTLDVKVVYHFKKI----RNLGGYKE---QEIVWMNMTDVTFKLPN--SIKWIKANVNQSGFY 360 (567)
Q Consensus 290 ~~~i~Q~rf~~~~~~~~~~~~~~~~W~i~~~----~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~wi~~N~~~~gyy 360 (567)
.++++|..-- +|.. +...-|+||+. ...|.... ..++.++..+.++...+ ..-...++-+.+.+=
T Consensus 6 ~Ltl~Q~~p~---tpgq---~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~~~PvpSllRgFSAPV 79 (367)
T PF11940_consen 6 TLTLSQSTPP---TPGQ---PEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVSEKPVPSLLRGFSAPV 79 (367)
T ss_dssp EEEEEEEE-----BTTB---SS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES---S--EEEESTTG-SSS
T ss_pred EEEEEecCCC---CCCC---CCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCCCCceeehhcCcccce
Confidence 4567776532 2221 12345666654 23332211 36788888888776543 223678899999999
Q ss_pred EeecCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-----HHHHHHcC-Ccch-hhhhHhhhhhhcCCCchhHHHHH----
Q psy7254 361 RVTYDDHLWDALIQALKTNHEVFSPADRASLIDD-----AFTLSRAG-LVNA-TVPLELSTYLLKEKDYVPWATAL---- 429 (567)
Q Consensus 361 RV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD-----~f~la~ag-~l~~-~~~l~l~~yL~~E~~y~~W~~a~---- 429 (567)
++.||-.. +.|+-.++.+.+.+..=+-+|-|-. ...-..+| .... ..+++.++.+-.+.+--|.-.+.
T Consensus 80 ~l~~~~s~-~eL~~L~~~D~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~A~~L~L 158 (367)
T PF11940_consen 80 KLEYDYSD-EELAFLAAHDSDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFKALLLTL 158 (367)
T ss_dssp EEE----H-HHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHHHHHTS-
T ss_pred EecCCCCH-HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHHHHHccC
Confidence 99886432 3334434434333333332322211 11111111 0111 23556666555555555555543
Q ss_pred HHHHHHHhhccC----------CchhHHHHHHHHHHHHHHHhhccccc--CCchH---HHHHHHHHHHHHHhcCCHHHHH
Q psy7254 430 EHFQHWSTSLSE----------ASPYRLFEQYVKKLLTPISHHIGWED--TGSHL---EKLMRSDILAAAVLVGVDTVVK 494 (567)
Q Consensus 430 ~~l~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~lg~~~--~~s~~---~~~lR~~il~~ac~~g~~~c~~ 494 (567)
.....+...... ......+..-+...+..+|+++.-.. .-+.. .|.||..+|.+++..+.+...+
T Consensus 159 Ps~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~~~~~~~ 238 (367)
T PF11940_consen 159 PSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAADDPEAAE 238 (367)
T ss_dssp --HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCTCTHHHH
T ss_pred CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 111222222110 01112222222333445555552111 11222 4677778888888888888888
Q ss_pred HHHHHhhhhhccCCCCCcchhhhheeheeecC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q psy7254 495 ESKSKFNGWMEKGFRIPPNLREVVYYAGIKYG---GVKEWQNCWAKYNSTRVPSERKLLLKVLGAS 557 (567)
Q Consensus 495 ~A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~g---~~~~w~~l~~~y~~~~~~~ek~~ll~aL~ct 557 (567)
.|.+.|+.-. ..--|-..+...+..+ .++..+..+++++.....-+|=-.+.|.+..
T Consensus 239 la~~qy~~A~------nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~ 298 (367)
T PF11940_consen 239 LAQEQYKSAD------NMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPS 298 (367)
T ss_dssp HHHHHHHHSS------SHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--S
T ss_pred HHHHHHHhCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCC
Confidence 8888777631 1222223333323321 2345566666666666566666666665444
No 23
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=83.32 E-value=3.1 Score=39.61 Aligned_cols=101 Identities=13% Similarity=-0.003 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCCcceee--cCCCCchhhh----hcccceecccccccCCCCCchhhHHHHHHHHHH
Q psy7254 81 FALNTSTHMMDFYEEFFGVP-YPLPKQDLIA--IPDFGTGAME----NWGLITYRETSILYDEQETSASGHNWVAVVVAH 153 (567)
Q Consensus 81 ~~l~~~~~~l~~~e~~fg~~-YP~~k~d~v~--~p~~~~game----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaH 153 (567)
.+.+...++..+-.+.|-.+ .+-+.++.|. +.++..-|-- +-.-|.++...+--.+.. ...+..+..+|.|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~--~~~~~Ei~Gvl~H 102 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPAD--GDVRDEIIGVLYH 102 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhcccc--cchHHHHHHHHHH
Confidence 34445556666666666433 2334444433 2333221111 124566665544322211 2234678899999
Q ss_pred HhhhcccccCCccccccccccccCccccCchhhhhhhHhhh
Q psy7254 154 ELAHQVSVVGSAKDVNSVLWKKQSNVKMNDHDVDDVAFLTG 194 (567)
Q Consensus 154 ElaHqW~~fGnl~~w~~~~WL~~~~~~~~Egf~a~y~~~~~ 194 (567)
|++|-|.|-|.- -.- -|| -||+ |.|..+.+
T Consensus 103 E~~H~~Q~~~~~--~~P-~~l-------iEGI-ADyVRl~a 132 (205)
T PF04450_consen 103 EMVHCWQWDGRG--TAP-GGL-------IEGI-ADYVRLKA 132 (205)
T ss_pred HHHHHhhcCCCC--CCC-hhh-------eecH-HHHHHHHc
Confidence 999999334422 223 578 9999 99998773
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=80.96 E-value=3.1 Score=33.14 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhccCCCCCcchhhhheeheeecCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy7254 474 KLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKV 553 (567)
Q Consensus 474 ~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~g~~~~w~~l~~~y~~~~~~~ek~~ll~a 553 (567)
...|..++..+|..++++.+....+++ ++ -.+.+|..+.-+--+.|+.+..+.+.+.+.++.+..-|...+.+
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d---~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD---EDPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS---SSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 357788999999998887766655555 22 26788888877766789999999999999988877778999988
Q ss_pred hC
Q psy7254 554 LG 555 (567)
Q Consensus 554 L~ 555 (567)
||
T Consensus 87 L~ 88 (88)
T PF13646_consen 87 LG 88 (88)
T ss_dssp HH
T ss_pred cC
Confidence 86
No 25
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=77.95 E-value=4.6 Score=32.11 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCc--hhhhhcccceecccccc----cCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 88 HMMDFYEEFFGVPYPLPKQDLIAIPDFGT--GAMENWGLITYRETSIL----YDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 88 ~~l~~~e~~fg~~YP~~k~d~v~~p~~~~--game~~gli~~~e~~ll----~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
.+...+|..||.+ |.++++-.-|.-.. .+| .+-.++......+ |++.... -..+++||++|=+
T Consensus 5 ~~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~-~A~A~T~G~~I~f~~g~~~~~s~~------~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 5 SIRSRLERAFGAD--LSDVRVHTGPAASRAAAAL-GARAFTVGNDIYFAPGKYNPDSPE------GRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHHhCCC--ccceEEEeCCchhhhhhcc-CCeEEEECCEEEEcCCCcCCCCCC------cchhHhHHHHHHH
Confidence 3556789999955 67777655443111 111 1223444544433 3333222 2468999999965
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=74.88 E-value=3.8 Score=41.91 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhcccccCCccccccccccccCccccCchhhhhhhHhhhhhh
Q psy7254 146 WVAVVVAHELAHQVSVVGSAKDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNH 197 (567)
Q Consensus 146 ~~~~~iaHElaHqW~~fGnl~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~ 197 (567)
..-.+++||+|||= | .. .|.= |+|+++++...
T Consensus 195 ~~P~T~~HElAHq~---G---------~a-------~E~E-ANFiayLac~~ 226 (318)
T PF12725_consen 195 SLPFTICHELAHQL---G---------FA-------SEDE-ANFIAYLACIN 226 (318)
T ss_pred cccHHHHHHHHHHh---C---------CC-------CHHH-HHHHHHHHHhc
Confidence 44578999999997 3 35 8888 99999887654
No 27
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=72.57 E-value=2.7 Score=40.37 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCCCCCcceeecCCCCchhhhhc--ccceecccccccCCCCCchhhHHHHHHHHHHHhhhcccccCCc
Q psy7254 90 MDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENW--GLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 90 l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~--gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~~fGnl 165 (567)
++-..+..|.+.|.+++-++-.|...+-++-.- .-|..... ++ . ......+..++|||++|-- -++.
T Consensus 37 v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~-ll-~-----~~~~~el~aVlaHElgH~~--~~h~ 105 (226)
T PF01435_consen 37 VEELARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSG-LL-E-----SLSEDELAAVLAHELGHIK--HRHI 105 (226)
T ss_dssp HHHHHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHH-HH-H-----HSSHHHHHHHHHHHHHHHH--TTHC
T ss_pred HHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeCh-hh-h-----cccHHHHHHHHHHHHHHHH--cCCc
Confidence 333333345577776666666564322121111 11444433 22 1 1234678899999999998 5543
No 28
>PRK04351 hypothetical protein; Provisional
Probab=70.91 E-value=2.9 Score=37.66 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhhhcc
Q psy7254 143 GHNWVAVVVAHELAHQV 159 (567)
Q Consensus 143 ~~~~~~~~iaHElaHqW 159 (567)
....+..+|+||++|-.
T Consensus 57 ~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 57 GLEELIGIIKHELCHYH 73 (149)
T ss_pred cHHHHHhhHHHHHHHHH
Confidence 35678899999999987
No 29
>PRK05457 heat shock protein HtpX; Provisional
Probab=65.02 E-value=9.1 Score=38.53 Aligned_cols=64 Identities=25% Similarity=0.406 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCC---CCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 87 THMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 87 ~~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
.+.++-+.+..|+ |.|++-++-.+. |..|.-.+-+.|.+... ++ + ....+.+..++|||++|.=
T Consensus 80 ~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~-----~L~~~El~aVlAHElgHi~ 146 (284)
T PRK05457 80 VETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LL-Q-----NMSRDEVEAVLAHEISHIA 146 (284)
T ss_pred HHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hh-h-----hCCHHHHHHHHHHHHHHHH
Confidence 3455566667775 578877775443 22232223334544432 22 1 1234678899999999987
No 30
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=64.78 E-value=5.2 Score=37.99 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhhhcccccCC
Q psy7254 133 LYDEQETSASGHNWVAVVVAHELAHQVSVVGS 164 (567)
Q Consensus 133 l~~~~~~~~~~~~~~~~~iaHElaHqW~~fGn 164 (567)
+|++..+.....-.+-.+|||||.|-.+..|.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~ 53 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGI 53 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 45655555566667789999999998755443
No 31
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=63.06 E-value=2.2 Score=45.99 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=29.4
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhhhcccc-------cCCc-ccccc
Q psy7254 133 LYDEQETSASGHNWVAVVVAHELAHQVSV-------VGSA-KDVNS 170 (567)
Q Consensus 133 l~~~~~~~~~~~~~~~~~iaHElaHqW~~-------fGnl-~~w~~ 170 (567)
+|+++.++....-.|-.||+|||.|..|- =||| +||.+
T Consensus 473 Ffd~ea~~a~NYGgIGaVIgHEI~HgFDdqGakfD~~GnL~dWWT~ 518 (654)
T COG3590 473 FFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDWWTD 518 (654)
T ss_pred CCCCCcchhhcccCccceehhhhcccccCCccccCCCCcHHhhcCH
Confidence 57777777777778899999999998643 2455 78877
No 32
>PRK03072 heat shock protein HtpX; Provisional
Probab=61.15 E-value=12 Score=37.71 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCC---CCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
..+.++-+.+..|+ |.|++-++-.+. |..|....-+.|...+. ++ + ....+.+..++|||++|-=
T Consensus 72 L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~-----~l~~~El~aVlAHElgHi~ 139 (288)
T PRK03072 72 MYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-Q-----ILNERELRGVLGHELSHVY 139 (288)
T ss_pred HHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-H-----hCCHHHHHHHHHHHHHHHh
Confidence 44666677777776 467776665443 22231111123333322 22 1 1234668899999999965
No 33
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=60.72 E-value=13 Score=33.47 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy7254 77 PQAKFALNTSTHMMDFYEEFFGVPYPLP 104 (567)
Q Consensus 77 ~~~~~~l~~~~~~l~~~e~~fg~~YP~~ 104 (567)
..+..|...+.++.+||.+.|| .=+++
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 4556777888999999999999 55554
No 34
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=60.43 E-value=7.9 Score=41.14 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=33.1
Q ss_pred CCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 101 YPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 101 YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
-|-.-++++.|.|=...|...+|--++--+.++..- +....++.|||||++|-=
T Consensus 89 ~~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~a-----e~esElagViAHEigHv~ 142 (484)
T COG4783 89 LVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTA-----ENESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCCeEEEEecCCccchhhcCCceEEEehHHHHhc-----CCHHHHHHHHHHHHHHHh
Confidence 345667888887755556666554443333333221 123567899999999975
No 35
>PRK01345 heat shock protein HtpX; Provisional
Probab=59.29 E-value=14 Score=37.89 Aligned_cols=65 Identities=28% Similarity=0.230 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhh---hcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME---NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
..+.++.+.+..|+| .|++-++-.+...+-+.. .-+.|.+.+.. + + ....+.+..++|||++|.=
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gL-L-~-----~L~~dEL~aVlAHElgHi~ 136 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTGL-L-Q-----RLSPEEVAGVMAHELAHVK 136 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechHH-H-h-----hCCHHHHHHHHHHHHHHHH
Confidence 446666777778876 467665543322221221 12245444332 2 1 1134678899999999986
No 36
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=58.68 E-value=6.7 Score=37.01 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhcccccCCccccccccccccCcc---ccCchhhhhhhHhhhhhhc
Q psy7254 147 VAVVVAHELAHQVSVVGSAKDVNSVLWKKQSNV---KMNDHDVDDVAFLTGVNHY 198 (567)
Q Consensus 147 ~~~~iaHElaHqW~~fGnl~~w~~~~WL~~~~~---~~~Egf~a~y~~~~~~~~~ 198 (567)
...++|||+.|-| ++|.+-.. ..-||+ +..+++.+++..
T Consensus 93 ~gsiLAHE~mHa~------------Lrl~g~~~L~~~vEEGi-Cqvla~~wL~~~ 134 (212)
T PF12315_consen 93 TGSILAHELMHAW------------LRLNGFPNLSPEVEEGI-CQVLAYLWLESE 134 (212)
T ss_pred HhhHHHHHHHHHH------------hcccCCCCCChHHHHHH-HHHHHHHHHhhh
Confidence 4578999999999 44433111 148999 999999988753
No 37
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=57.72 E-value=44 Score=37.53 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhhccCCCCCcchhhhh-eehe--eecCCHHHHHHHHHHHhcCCCHHH-HHHH
Q psy7254 475 LMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVV-YYAG--IKYGGVKEWQNCWAKYNSTRVPSE-RKLL 550 (567)
Q Consensus 475 ~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~ip~dlr~~V-yc~g--i~~g~~~~w~~l~~~y~~~~~~~e-k~~l 550 (567)
.-+...|..++.+|++..+.. +..++.+....|..+|-.+ +... ...-.....+.++..|.+.+.+.| |...
T Consensus 505 ~~~~~~LkaLgN~g~~~~i~~----l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 505 EEKIVYLKALGNLGHPESIPV----LLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHHHHHHHHT-GGGHHH----HHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHHHhhccCCchhhHH----HHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHH
Confidence 344556777778888876654 4455555446788887544 3332 234456789999999998877655 5444
Q ss_pred HHHh-CCCCChhHHhh
Q psy7254 551 LKVL-GASRDPWILQR 565 (567)
Q Consensus 551 l~aL-~ct~d~~ll~r 565 (567)
+..| -|-.....+++
T Consensus 581 ~~~lm~~~P~~~~l~~ 596 (618)
T PF01347_consen 581 YLILMRCNPSPSVLQR 596 (618)
T ss_dssp HHHHHHT---HHHHHH
T ss_pred HHHHHhcCCCHHHHHH
Confidence 4444 46567666654
No 38
>PRK04897 heat shock protein HtpX; Provisional
Probab=57.58 E-value=15 Score=37.23 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCC---CCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
..+.++.+.+..|+ |.|++-++--+. |..|.-..-+.|.+.... + + ....+.+..++|||++|-=
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gL-l-~-----~l~~~El~aVlAHElgHi~ 149 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGL-L-A-----IMNREELEGVIGHEISHIR 149 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehHH-H-h-----hCCHHHHHHHHHHHHHHHh
Confidence 44666666677775 567877664432 222222223344444322 1 1 1134668899999999965
No 39
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=56.11 E-value=14 Score=33.28 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhcc
Q psy7254 144 HNWVAVVVAHELAHQV 159 (567)
Q Consensus 144 ~~~~~~~iaHElaHqW 159 (567)
...+..+|.||++|.|
T Consensus 57 ~~~~~~tL~HEm~H~~ 72 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAA 72 (157)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578899999999999
No 40
>PRK03982 heat shock protein HtpX; Provisional
Probab=55.99 E-value=17 Score=36.56 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhh-----hcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME-----NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
..+.++-+.+..|+| .|++-++--+. ..|+. .-|.|...+.. + . ....+.+..++|||++|-=
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~~~~~--~NAfa~G~~~~~~~V~vt~gL-l-----~-~l~~~El~AVlAHElgHi~ 137 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIVPTQT--PNAFATGRDPKHAVVAVTEGI-L-----N-LLNEDELEGVIAHELTHIK 137 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEEeCCC--cceEEeccCCCCeEEEeehHH-H-----h-hCCHHHHHHHHHHHHHHHH
Confidence 445555566667765 45665553322 22222 12344444332 1 1 1235678899999999976
No 41
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=55.48 E-value=16 Score=36.82 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHhCCCCCCCCcceeecCCCCchhhhhc---ccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 92 FYEEFFGVPYPLPKQDLIAIPDFGTGAMENW---GLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 92 ~~e~~fg~~YP~~k~d~v~~p~~~~game~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
-....-| ..+.+++.++..|.-.+-++... |.|...+.. + + ....+.+..++|||++|.=
T Consensus 107 ~~a~~~~-~~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gL-l-~-----~l~~dEl~aVlaHElgHi~ 169 (302)
T COG0501 107 ELARQAG-IPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGL-L-D-----LLNDDELEAVLAHELGHIK 169 (302)
T ss_pred HHHHHCC-CCCCCeeEEecCCCccceecCCCCCCeeEEecHHH-H-h-----hCCHHHHHHHHHHHHHHHh
Confidence 3334455 33356777776665333344443 666665442 2 2 2245678899999999987
No 42
>PRK03001 M48 family peptidase; Provisional
Probab=55.40 E-value=15 Score=36.99 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCC---CCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
..+.++-+.+..|+| .|++-++--+. |..|.-...+.|...+..+ + ....+.+..++|||++|-=
T Consensus 69 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl--~-----~l~~~El~aVlAHElgHi~ 136 (283)
T PRK03001 69 FYRMVRELAQRAGLP--MPKVYLINEDQPNAFATGRNPEHAAVAATTGIL--R-----VLSEREIRGVMAHELAHVK 136 (283)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEecCCCcceEEecCCCCCeEEEecHHHH--h-----hCCHHHHHHHHHHHHHHHh
Confidence 445666667777765 45665543322 2222111223344443322 1 1134668899999999976
No 43
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=55.12 E-value=35 Score=31.96 Aligned_cols=15 Identities=47% Similarity=0.640 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhcc
Q psy7254 145 NWVAVVVAHELAHQV 159 (567)
Q Consensus 145 ~~~~~~iaHElaHqW 159 (567)
...+.++|||++|+.
T Consensus 129 ~~~a~~~AHElGH~l 143 (194)
T cd04269 129 LLFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHHhhc
Confidence 355789999999995
No 44
>PRK02870 heat shock protein HtpX; Provisional
Probab=54.76 E-value=19 Score=37.22 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCC---CCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 88 HMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 88 ~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
++++-+....|+|+ .|++-++-.+. |..|--..-+.|...+.. + + ....+.+..++|||++|-=
T Consensus 119 ~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GL-L-~-----~L~~dEL~aVlAHELgHik 185 (336)
T PRK02870 119 NVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTGL-L-E-----KLDRDELQAVMAHELSHIR 185 (336)
T ss_pred HHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehHH-h-h-----hCCHHHHHHHHHHHHHHHH
Confidence 44444455556542 35665554332 222211223455554442 2 1 1134678899999999965
No 45
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.45 E-value=82 Score=33.08 Aligned_cols=119 Identities=21% Similarity=0.350 Sum_probs=77.3
Q ss_pred CChhhHHHHHHHHHH-HHHcCCcchhhhhHhhhhhhcCCCch--------hHHHHH----HHHHHHHhhccCCch--hHH
Q psy7254 383 FSPADRASLIDDAFT-LSRAGLVNATVPLELSTYLLKEKDYV--------PWATAL----EHFQHWSTSLSEASP--YRL 447 (567)
Q Consensus 383 i~~~~Ra~LidD~f~-la~ag~l~~~~~l~l~~yL~~E~~y~--------~W~~a~----~~l~~~~~~~~~~~~--~~~ 447 (567)
-.+.||.++|+|+-. |..+..++|..-|.+++--++|-.+- .|..-- ..|++|.+.+...+. .-.
T Consensus 310 ~~~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl 389 (473)
T COG0362 310 GEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLL 389 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhh
Confidence 348999999999987 55666789999999999888776654 243321 455555554332221 112
Q ss_pred HHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhhhccCCCCCcchhhh
Q psy7254 448 FEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVD-TVVKESKSKFNGWMEKGFRIPPNLREV 517 (567)
Q Consensus 448 ~~~~~~~l~~~~~~~lg~~~~~s~~~~~lR~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~ip~dlr~~ 517 (567)
+..|..++++. ...-+|. ++..|...|.+ +|...|...|+.|.. ..+|++|..+
T Consensus 390 ~~pyF~~~~~~-------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~--~~lpaNLiQA 444 (473)
T COG0362 390 LAPYFKSILEE-------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT--ARLPANLIQA 444 (473)
T ss_pred cCHHHHHHHHH-------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh--ccccHHHHHH
Confidence 33333333332 2334555 55567788866 999999999999875 3788887543
No 46
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=54.17 E-value=18 Score=32.35 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc--cccC
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV--SVVG 163 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW--~~fG 163 (567)
..+.++--+..|+-+||.|+... ..-++- .|--.+..+.+=++|..--......+..+|.||+||-= -.||
T Consensus 7 L~~~~~~as~~~~r~~~~p~~~~------n~Rg~t-aG~ayL~~~~I~lNP~ll~en~~~f~~~vV~HELaHl~ly~~~g 79 (156)
T COG3091 7 LQQCVEQASLKFFRKFFRPKASY------NQRGRT-AGGAYLLKSEIRLNPKLLEENGEDFIEQVVPHELAHLHLYQEFG 79 (156)
T ss_pred HHHHHHHHHHHhcCCCCCcceeh------hhhhhh-cchhhccccccccCHHHHHHccHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555555544999888642 111111 11111222223333322222234567889999998742 2266
Q ss_pred Cc
Q psy7254 164 SA 165 (567)
Q Consensus 164 nl 165 (567)
..
T Consensus 80 r~ 81 (156)
T COG3091 80 RY 81 (156)
T ss_pred CC
Confidence 55
No 47
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=53.51 E-value=5.9 Score=33.39 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=18.6
Q ss_pred ccccccCCCCCchhhHHHHHHHHHHHhhhcccccCCc
Q psy7254 129 ETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 129 e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~~fGnl 165 (567)
...+++++..+ ...-..+++||++|.+ ++..
T Consensus 28 ~~~I~in~~~~----~~~~~f~laHELgH~~--~~~~ 58 (122)
T PF06114_consen 28 NPIIFINSNLS----PERQRFTLAHELGHIL--LHHG 58 (122)
T ss_dssp TTEEEEESSS-----HHHHHHHHHHHHHHHH--HHH-
T ss_pred CCEEEECCCCC----HHHHHHHHHHHHHHHH--hhhc
Confidence 33445555422 2233579999999999 6643
No 48
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=51.86 E-value=20 Score=34.73 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhccc
Q psy7254 81 FALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVS 160 (567)
Q Consensus 81 ~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~ 160 (567)
.+.+.....++.|.+.+|+++.--++. ..-. ..|+-...|-|.+.-.... .....+..+++||+||-=
T Consensus 120 ~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~l~~--------~p~~~i~YVvvHELaHLk- 187 (223)
T COG1451 120 ILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWRLVM--------APEEVIDYVVVHELAHLK- 187 (223)
T ss_pred HHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehhhhc--------CCHHHHHHHHHHHHHHHh-
Confidence 566777888888999999876543333 1111 1333334444444432221 234567889999999998
Q ss_pred ccCCc--ccccc
Q psy7254 161 VVGSA--KDVNS 170 (567)
Q Consensus 161 ~fGnl--~~w~~ 170 (567)
..|- +.|+.
T Consensus 188 -e~nHs~~Fw~l 198 (223)
T COG1451 188 -EKNHSKRFWRL 198 (223)
T ss_pred -hhhccHHHHHH
Confidence 8886 55555
No 49
>PRK02391 heat shock protein HtpX; Provisional
Probab=51.64 E-value=23 Score=35.91 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCC---CCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 86 STHMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 86 ~~~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
..+.++.+.+..|+| .|++-++-.+. |..|.-..-+.|.+.+.. + + ......+..++|||++|--
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gL-l-~-----~L~~~El~aVlaHElgHi~ 145 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTGL-M-R-----RLDPDELEAVLAHELSHVK 145 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHHH-H-h-----hCCHHHHHHHHHHHHHHHH
Confidence 345555666777765 56776665443 222221122344443332 2 1 1134567899999999977
No 50
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=49.66 E-value=56 Score=29.36 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=24.3
Q ss_pred eeEEEEeCCCCc---hhHHHHHHHHHHHHHHHHHHhCCC
Q psy7254 65 VSVSVYAPPDLL---PQAKFALNTSTHMMDFYEEFFGVP 100 (567)
Q Consensus 65 ~~i~v~~~p~~~---~~~~~~l~~~~~~l~~~e~~fg~~ 100 (567)
.++++|..|... .......+.+.+++...++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 468888877653 234556777888888888875433
No 51
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=46.59 E-value=10 Score=35.12 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhcc
Q psy7254 147 VAVVVAHELAHQV 159 (567)
Q Consensus 147 ~~~~iaHElaHqW 159 (567)
-..++|||++||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 3567999999996
No 52
>KOG2661|consensus
Probab=46.44 E-value=12 Score=37.77 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHhhhcccccCCc
Q psy7254 142 SGHNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 142 ~~~~~~~~~iaHElaHqW~~fGnl 165 (567)
.....++.+++||+|||- -+..
T Consensus 270 k~ddglAtvLgHE~aHaV--arH~ 291 (424)
T KOG2661|consen 270 KDDDGLATVLGHEIAHAV--ARHA 291 (424)
T ss_pred cChHHHHHHHHHHHHHHH--HHHH
Confidence 345678999999999998 5543
No 53
>KOG2653|consensus
Probab=45.10 E-value=85 Score=32.39 Aligned_cols=115 Identities=18% Similarity=0.310 Sum_probs=69.9
Q ss_pred hHHHHHHHHHH-HHHcCCcchhhhhHhhhhhhcCCCch--------hHHHHH----HHHHHHHhhccCCch--hHHHHHH
Q psy7254 387 DRASLIDDAFT-LSRAGLVNATVPLELSTYLLKEKDYV--------PWATAL----EHFQHWSTSLSEASP--YRLFEQY 451 (567)
Q Consensus 387 ~Ra~LidD~f~-la~ag~l~~~~~l~l~~yL~~E~~y~--------~W~~a~----~~l~~~~~~~~~~~~--~~~~~~~ 451 (567)
++-|+|||+-. |..+..++|..-|+|+.--..|..+- .|..-- .+|..+-+.+...+. --.+..|
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~f 398 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPF 398 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHH
Confidence 59999999976 66777889999999998766655432 343321 233333333221322 1122333
Q ss_pred HHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhhhccCCCCCcchhhh
Q psy7254 452 VKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVD-TVVKESKSKFNGWMEKGFRIPPNLREV 517 (567)
Q Consensus 452 ~~~l~~~~~~~lg~~~~~s~~~~~lR~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~ip~dlr~~ 517 (567)
..+.+... +...|. ++..|...|.+ +|...|...|+.|.. ..+|+++..+
T Consensus 399 F~~~v~~~-------------q~~wr~-vV~~a~~~gIptP~~st~Lafydgyr~--e~lpaNllQA 449 (487)
T KOG2653|consen 399 FAKAVEEA-------------QDSWRR-VVALAVEAGIPTPAFSTALAFYDGYRS--ERLPANLLQA 449 (487)
T ss_pred HHHHHHHH-------------HHHHHH-HHHHHHhcCCCChhHHHHHHHHhhhhh--hcCcHHHHHH
Confidence 33333332 222333 55567788855 899999999998864 4789888653
No 54
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=43.85 E-value=1.3e+02 Score=29.18 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHcCCcchhhhhHhhhhhhcCCCchhHHHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHhh--
Q psy7254 386 ADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSE-ASPYRLFEQYVKKLLTPISHH-- 462 (567)
Q Consensus 386 ~~Ra~LidD~f~la~ag~l~~~~~l~l~~yL~~E~~y~~W~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-- 462 (567)
.-|.+++-=...+.+.|.++...+.+++..|..|-+.+|=.......+.+++.+.. ......+..-+-+.++.+-.+
T Consensus 3 ~kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~~~~~ldLlP~~Ls~L~~~~~ 82 (223)
T PF14675_consen 3 LKRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNKNGKWLDLLPKCLSALSASES 82 (223)
T ss_dssp HHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S-STTTTHHHHHHHHHHT-S-
T ss_pred cHHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHhcCcc
Confidence 34777888888889999999999999999999999999988877555555444321 222223333333333333222
Q ss_pred cccccCCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhh
Q psy7254 463 IGWEDTGSHLEKLMRSDILAAAVLVG-VDTVVKESKSKFNGW 503 (567)
Q Consensus 463 lg~~~~~s~~~~~lR~~il~~ac~~g-~~~c~~~A~~~f~~~ 503 (567)
+--+ ++...-...+..+++-.|... .+.|.-.--.+|++.
T Consensus 83 i~~~-~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 83 INYN-GGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp -SSS-S----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred cccc-cccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 1111 233445678888999988877 667777777777764
No 55
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=42.66 E-value=11 Score=31.57 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhcc
Q psy7254 146 WVAVVVAHELAHQV 159 (567)
Q Consensus 146 ~~~~~iaHElaHqW 159 (567)
....+++||++|-|
T Consensus 78 GC~~TL~HEL~H~W 91 (141)
T PHA02456 78 GCRDTLAHELNHAW 91 (141)
T ss_pred chHHHHHHHHHHHH
Confidence 45678999999999
No 56
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=42.08 E-value=43 Score=32.15 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhcc
Q psy7254 147 VAVVVAHELAHQV 159 (567)
Q Consensus 147 ~~~~iaHElaHqW 159 (567)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 3689999999994
No 57
>PRK01265 heat shock protein HtpX; Provisional
Probab=41.33 E-value=38 Score=34.73 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCC---CCchh-hhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcc
Q psy7254 87 THMMDFYEEFFGVPYPLPKQDLIAIPD---FGTGA-MENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQV 159 (567)
Q Consensus 87 ~~~l~~~e~~fg~~YP~~k~d~v~~p~---~~~ga-me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 159 (567)
.+.++-+.+..|+ |.|++-++-.+. |..|- ..+ +-|...+.. + + ....+.+..++|||++|-=
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~gL-l-~-----~l~~~El~aVlAHElgHik 152 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAG-KRIAITLPL-L-K-----ILNRDEIKAVAGHELGHLK 152 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCC-CEEEEehHH-H-h-----hCCHHHHHHHHHHHHHHHH
Confidence 3555566666776 467776665442 22221 112 334444332 2 1 1244678899999999954
No 58
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=38.80 E-value=40 Score=31.72 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhcccccCCc
Q psy7254 144 HNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 144 ~~~~~~~iaHElaHqW~~fGnl 165 (567)
....+.++|||++|- +|--
T Consensus 128 ~~~~a~~~AHelGH~---lGm~ 146 (199)
T PF01421_consen 128 GLSFAVIIAHELGHN---LGMP 146 (199)
T ss_dssp HHHHHHHHHHHHHHH---TT--
T ss_pred hHHHHHHHHHHHHHh---cCCC
Confidence 456788999999998 6754
No 59
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.37 E-value=6.6e+02 Score=27.86 Aligned_cols=171 Identities=17% Similarity=0.113 Sum_probs=94.3
Q ss_pred CCCChhhHHHHHHHHHHHHH-cCCcchhhhhHhhhhhhcCCCchhHHHHHHHHHHHHhhccCCc--h----hHHHHHHHH
Q psy7254 381 EVFSPADRASLIDDAFTLSR-AGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEAS--P----YRLFEQYVK 453 (567)
Q Consensus 381 ~~i~~~~Ra~LidD~f~la~-ag~l~~~~~l~l~~yL~~E~~y~~W~~a~~~l~~~~~~~~~~~--~----~~~~~~~~~ 453 (567)
..++..++++++.=+.+++. .-.--...+++|++.=.-..+...|.++.-.+..+....+... . ...+.+|+.
T Consensus 369 ~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~ 448 (574)
T smart00638 369 KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLH 448 (574)
T ss_pred CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Confidence 45788888888877776653 3333344455555433334566778888755555555432121 1 133444444
Q ss_pred HHHHHHHhhcccccCCchHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhccCCCCCcchhhhheeheee----cCCHH
Q psy7254 454 KLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIK----YGGVK 529 (567)
Q Consensus 454 ~l~~~~~~~lg~~~~~s~~~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~----~g~~~ 529 (567)
..+....++ ++. .-+...|..++..|++..+... ..++.+....|+.+|-.+. .+++ .-...
T Consensus 449 ~~l~~~~~~------~~~---~~~~~~LkaLGN~g~~~~i~~l----~~~l~~~~~~~~~iR~~Av-~Alr~~a~~~p~~ 514 (574)
T smart00638 449 ELLQQAVSK------GDE---EEIQLYLKALGNAGHPSSIKVL----EPYLEGAEPLSTFIRLAAI-LALRNLAKRDPRK 514 (574)
T ss_pred HHHHHHHhc------CCc---hheeeHHHhhhccCChhHHHHH----HHhcCCCCCCCHHHHHHHH-HHHHHHHHhCchH
Confidence 444333211 111 1245567777888888777653 3333344456667774432 2333 34566
Q ss_pred HHHHHHHHHhcCCCHHH-HHHHHHHh-CCCCChhHHhh
Q psy7254 530 EWQNCWAKYNSTRVPSE-RKLLLKVL-GASRDPWILQR 565 (567)
Q Consensus 530 ~w~~l~~~y~~~~~~~e-k~~ll~aL-~ct~d~~ll~r 565 (567)
.-+.++..|.+...+.| |...+.+| -|-.+...+++
T Consensus 515 v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ 552 (574)
T smart00638 515 VQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQR 552 (574)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHH
Confidence 77888888887665544 54444443 45567766655
No 60
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=34.99 E-value=24 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=12.3
Q ss_pred HHHHHHHhhhcccccC
Q psy7254 148 AVVVAHELAHQVSVVG 163 (567)
Q Consensus 148 ~~~iaHElaHqW~~fG 163 (567)
-+++|||+++.|.|.|
T Consensus 53 GEl~AhE~~fr~gW~g 68 (77)
T PF08219_consen 53 GELFAHEIAFRLGWSG 68 (77)
T ss_pred HHHHHHHHHHHhccCc
Confidence 3679999999985544
No 61
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=33.50 E-value=1.5e+02 Score=30.71 Aligned_cols=91 Identities=8% Similarity=0.021 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcccccCCc---
Q psy7254 89 MMDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSA--- 165 (567)
Q Consensus 89 ~l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~~fGnl--- 165 (567)
+-++..++|+ .. --++.+...++..++||-.-+-|..+.... ..+.++..++.||+.-+- .-.+
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~--lt~~Ng~ 184 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHL--LTTLNGR 184 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhh--ccccccc
Confidence 3334455565 22 235666666778778876666565555432 245778899999994433 2222
Q ss_pred cccccccccccC---ccccCchhhhhhhHhhhh
Q psy7254 166 KDVNSVLWKKQS---NVKMNDHDVDDVAFLTGV 195 (567)
Q Consensus 166 ~~w~~~~WL~~~---~~~~~Egf~a~y~~~~~~ 195 (567)
... = -||... +....||+ |.+.|++.-
T Consensus 185 ~QP-l-~~l~~Glp~~~~TQEGL-Avl~E~l~g 214 (349)
T PF08014_consen 185 AQP-L-KILSLGLPGYTPTQEGL-AVLSEYLSG 214 (349)
T ss_pred cCC-c-HHhCCCCCCCCCCchHH-HHHHHHHhC
Confidence 111 1 123222 22269999 999997743
No 62
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=33.33 E-value=28 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.5
Q ss_pred CchhhHHHHHHHHHHHhhhcccccCCc
Q psy7254 139 TSASGHNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 139 ~~~~~~~~~~~~iaHElaHqW~~fGnl 165 (567)
........+..++.||+||.+ +|+-
T Consensus 74 ~~fl~~~~i~~t~lHELaH~~--~~~H 98 (186)
T PF08325_consen 74 GGFLPYETILGTMLHELAHNV--HGPH 98 (186)
T ss_pred CCEeeHHHHHHHHHHHHHhcc--cCCc
Confidence 344456788999999999999 9986
No 63
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=31.01 E-value=1.8e+02 Score=26.90 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHH---HHHHHHHHHHHhCCC-CCCCCcceeecCCCCchhhh--hcccceecccccccCCCCCchhhHHHHHHHHHH
Q psy7254 80 KFALNT---STHMMDFYEEFFGVP-YPLPKQDLIAIPDFGTGAME--NWGLITYRETSILYDEQETSASGHNWVAVVVAH 153 (567)
Q Consensus 80 ~~~l~~---~~~~l~~~e~~fg~~-YP~~k~d~v~~p~~~~game--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaH 153 (567)
.++++. +.-+++.+++ .|.+ .|-..+....-|+-..||.. ..|+++-. .. ...+..+..+|+|
T Consensus 9 ~~~l~~sp~v~fl~~~~~~-~gc~~~~~~~i~c~~C~~~~~Ggf~p~~~~I~lC~-N~---------~~~~~~l~~~l~H 77 (173)
T PF09768_consen 9 DKLLKYSPTVRFLMEALKK-LGCPPVPPRHIKCEPCDSSVSGGFDPSKKGIVLCQ-NR---------IRSQGHLEDTLTH 77 (173)
T ss_pred HHHHhhCcHHHHHHHHHHH-cCCCCCCCCCeEEEECcCCCcCCccCCCCCEEEee-CC---------CCCHHHHHHHHHH
Confidence 444543 3333444444 4545 33344444444554445443 34443322 22 1245667889999
Q ss_pred Hhhhcc
Q psy7254 154 ELAHQV 159 (567)
Q Consensus 154 ElaHqW 159 (567)
||.|-|
T Consensus 78 ELIHay 83 (173)
T PF09768_consen 78 ELIHAY 83 (173)
T ss_pred HHHHHH
Confidence 999998
No 64
>KOG2719|consensus
Probab=28.61 E-value=63 Score=34.20 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCCCCCcceeecCCCCchhhhhcccceec--ccccccCCCCC-ch-hhHHHHHHHHHHHhhhc
Q psy7254 90 MDFYEEFFGVPYPLPKQDLIAIPDFGTGAMENWGLITYR--ETSILYDEQET-SA-SGHNWVAVVVAHELAHQ 158 (567)
Q Consensus 90 l~~~e~~fg~~YP~~k~d~v~~p~~~~game~~gli~~~--e~~ll~~~~~~-~~-~~~~~~~~~iaHElaHq 158 (567)
++.+.+-. .+|..|+.++-...- ++-.|.-++.+. +.-.+||.-.. .. ...+.+..+++||++|=
T Consensus 223 Ie~la~s~--gfp~~k~~vi~~s~r--s~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW 291 (428)
T KOG2719|consen 223 IERLADSV--GFPLSKYRVIDGSKR--SSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHW 291 (428)
T ss_pred HHHHHHhc--CCCceEEEEEecCCC--CCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHhhHH
Confidence 33333444 589999998875321 112222222111 11233333210 00 13467889999999994
No 65
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=28.58 E-value=66 Score=34.37 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=21.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhC
Q psy7254 73 PDLLPQAKFALNTSTHMMDFYEEFFG 98 (567)
Q Consensus 73 p~~~~~~~~~l~~~~~~l~~~e~~fg 98 (567)
|+....+..|-..+.++.+||.+.||
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fg 290 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFG 290 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhc
Confidence 44445566777888999999999999
No 66
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=28.43 E-value=31 Score=32.33 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhcccccCCc
Q psy7254 145 NWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 145 ~~~~~~iaHElaHqW~~fGnl 165 (567)
.....++|||++|.+ |-.
T Consensus 140 ~~~~~~~AHEiGH~l---Ga~ 157 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL---GAP 157 (196)
T ss_dssp HHHHHHHHHHHHHHT---T--
T ss_pred CceehhhHHhHHHhc---CCC
Confidence 455689999999996 654
No 67
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=28.39 E-value=39 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=23.7
Q ss_pred hcccceecccccccCCCCCchhhHHHHHHHHHHHhhhc
Q psy7254 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158 (567)
Q Consensus 121 ~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 158 (567)
..-++.||......- .+...-...+..++.||+||.
T Consensus 49 p~rI~lyR~pl~~~~--~~~~eL~~~I~~tlvhEiah~ 84 (97)
T PF06262_consen 49 PDRIVLYRRPLERRA--RSREELAELIRDTLVHEIAHH 84 (97)
T ss_dssp -EEEEEEHHHHHHT---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEehHHHHHHh--CCHHHHHHHHHHHHHHHHHHH
Confidence 355778887644332 233345567889999999998
No 68
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=27.81 E-value=53 Score=33.22 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCC--------CCCcceeecCCCCchhhh-hcccceecccccccCCCCCchhhHHHHHH
Q psy7254 79 AKFALNTSTHMMDFYEEFFGVPYP--------LPKQDLIAIPDFGTGAME-NWGLITYRETSILYDEQETSASGHNWVAV 149 (567)
Q Consensus 79 ~~~~l~~~~~~l~~~e~~fg~~YP--------~~k~d~v~~p~~~~game-~~gli~~~e~~ll~~~~~~~~~~~~~~~~ 149 (567)
....++...++++...++.|.+.+ .++.++|.-+.+..|.|- ..+-|.+.... .+.... ......-..
T Consensus 145 ~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~l~-~~~~~~~~W 221 (307)
T PF13402_consen 145 PEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNELLN-PNPLRKGGW 221 (307)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHHH--HHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--HhcccC-HhHcCCCCe
Confidence 456677888899999999998884 233377777776666665 23333333221 000000 000111245
Q ss_pred HHHHHhhhcccccCCccccccccccccCccccCchhhhhhhHhhhhhhc
Q psy7254 150 VVAHELAHQVSVVGSAKDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHY 198 (567)
Q Consensus 150 ~iaHElaHqW~~fGnl~~w~~~~WL~~~~~~~~Egf~a~y~~~~~~~~~ 198 (567)
-+.||+.|+- +-+.. .|.. + .|.- ...++.+.....
T Consensus 222 G~~HE~GH~~-Q~~~~-~~~g---~-------~EvT-nNi~sl~~~~~~ 257 (307)
T PF13402_consen 222 GPWHELGHNH-QQGPW-TWSG---M-------GEVT-NNIYSLYVQEKF 257 (307)
T ss_dssp HHHHHHHHHH--BGGG---TT-----------TTTT-HHHHHHHHHHHT
T ss_pred eehhhhhhhc-Ccccc-ccCC---C-------Cchh-hHHHHHHHHHHH
Confidence 7999999985 11110 1222 3 6766 677776655544
No 69
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=27.65 E-value=1.9e+02 Score=30.13 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=46.6
Q ss_pred CcceeecCCCCchhhhhcccceecccccccCCCCCchhhHHHHHHHHHHHhhhcccccCCc----cccccccccccC---
Q psy7254 105 KQDLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSA----KDVNSVLWKKQS--- 177 (567)
Q Consensus 105 k~d~v~~p~~~~game~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW~~fGnl----~~w~~~~WL~~~--- 177 (567)
+..+...++..++||-.-.-|..+.... .....+..++.||+.-+- .-.+ .-|. |++..
T Consensus 155 ~~~V~~sd~l~a~a~v~~~~l~i~~~a~---------fs~~~l~~L~~HEigvH~--~T~~Ng~~Qp~~---~l~~G~p~ 220 (366)
T TIGR02421 155 TIRVTLSDDLPAGAMVSGDKLKLNSDAM---------FSERDLEALIHHEIGVHL--LTTLNGRAQPLR---LLSIGLPG 220 (366)
T ss_pred ceEEEECcchhHHHhccCCeEEECCCCC---------cCHHHHHHHHHHhHHhhh--hhccccccCchH---HHhcCCCC
Confidence 5555566777788887766555554432 234567889999987554 3333 2221 23222
Q ss_pred ccccCchhhhhhhHhhhh
Q psy7254 178 NVKMNDHDVDDVAFLTGV 195 (567)
Q Consensus 178 ~~~~~Egf~a~y~~~~~~ 195 (567)
+....||+ |.+.|++.-
T Consensus 221 ~t~tQEGL-Avl~E~l~g 237 (366)
T TIGR02421 221 YTATQEGL-AILAEYLAG 237 (366)
T ss_pred CCCccHHH-HHHHHHHhc
Confidence 22279999 999997654
No 70
>COG5442 FlaF Flagellar biosynthesis regulator FlaF [Cell motility and secretion]
Probab=27.48 E-value=48 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.5
Q ss_pred eecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy7254 362 VTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFT 397 (567)
Q Consensus 362 V~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~ 397 (567)
+.|....|..+++-|....+.+|..=||.||+=..-
T Consensus 49 l~ftrrvW~~fieDl~~pdNqLp~ELRAnlISigiw 84 (115)
T COG5442 49 LYFTRRVWTRFIEDLGSPDNQLPMELRANLISIGIW 84 (115)
T ss_pred HHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence 456788999999999988889999999999975443
No 71
>KOG3607|consensus
Probab=26.68 E-value=1.3e+02 Score=34.45 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred eEEEEeCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCC--chhhhhcccce---ecccccccCCCCCc
Q psy7254 66 SVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFG--TGAMENWGLIT---YRETSILYDEQETS 140 (567)
Q Consensus 66 ~i~v~~~p~~~~~~~~~l~~~~~~l~~~e~~fg~~YP~~k~d~v~~p~~~--~game~~gli~---~~e~~ll~~~~~~~ 140 (567)
-+++|+.++.......+.+.....+.|=..++...-|.+---++..-.|. ..|++..|-+= ++.....+.++
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 47799998888777666666666777666666633344444444321221 12344333111 22211111111
Q ss_pred hhhHHHHHHHHHHHhhhcccccCCc
Q psy7254 141 ASGHNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 141 ~~~~~~~~~~iaHElaHqW~~fGnl 165 (567)
.....+.++||||+|- +|-.
T Consensus 319 --~~~~~a~v~AhelgH~---lGm~ 338 (716)
T KOG3607|consen 319 --ILLAFAVVLAHELGHN---LGMI 338 (716)
T ss_pred --cchhHHHHHHHHHHhh---cCcc
Confidence 1345688999999998 5765
No 72
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.45 E-value=5.4e+02 Score=26.55 Aligned_cols=122 Identities=13% Similarity=0.234 Sum_probs=77.7
Q ss_pred cchhhhhHhhhhhhcCCCchhHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHH
Q psy7254 404 VNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAA 483 (567)
Q Consensus 404 l~~~~~l~l~~yL~~E~~y~~W~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~s~~~~~lR~~il~~ 483 (567)
-+|+.++....-|....+|+.=...+..|..++.. ...++.+.+|+.+ ...|+. ++.+
T Consensus 205 ~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld---r~n~~vm~~yi~~------------------~~nLkl-~M~l 262 (335)
T PF08569_consen 205 NNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD---RSNFNVMTRYISS------------------PENLKL-MMNL 262 (335)
T ss_dssp HTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS---GGGHHHHHHHTT-------------------HHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc---hhHHHHHHHHHCC------------------HHHHHH-HHHH
Confidence 48889999888888999999999999999998876 6778888888621 112222 1111
Q ss_pred HHhcCCHHHHHHHHHHhhhhhccCCCCCcchhhhheeheeecCCHHHHHHHHHHHhcCC-C----HHHHHHHHHHhC
Q psy7254 484 AVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTR-V----PSERKLLLKVLG 555 (567)
Q Consensus 484 ac~~g~~~c~~~A~~~f~~~~~~~~~ip~dlr~~Vyc~gi~~g~~~~w~~l~~~y~~~~-~----~~ek~~ll~aL~ 555 (567)
-+-..+...-+|-..|+-|++|++. ||.++.+... +.+--=..+..|.... + ..||..++..+.
T Consensus 263 -L~d~sk~Iq~eAFhvFKvFVANp~K-~~~I~~iL~~------Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~ 331 (335)
T PF08569_consen 263 -LRDKSKNIQFEAFHVFKVFVANPNK-PPPIVDILIK------NREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIE 331 (335)
T ss_dssp -TT-S-HHHHHHHHHHHHHHHH-SS--BHHHHHHHHH------THHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred -hcCcchhhhHHHHHHHHHHHhCCCC-ChHHHHHHHH------HHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHH
Confidence 1335667778999999999998644 4446665543 4444444444554443 2 368888877653
No 73
>KOG3624|consensus
Probab=24.27 E-value=63 Score=36.98 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhccccc-------CCc-ccccc
Q psy7254 135 DEQETSASGHNWVAVVVAHELAHQVSVV-------GSA-KDVNS 170 (567)
Q Consensus 135 ~~~~~~~~~~~~~~~~iaHElaHqW~~f-------Gnl-~~w~~ 170 (567)
+.........-.+..+|+||+.|-.|-. ||+ .||+.
T Consensus 506 ~~~~P~~~nyg~iG~vigHEl~H~FD~~G~~~D~~Gn~~~ww~~ 549 (687)
T KOG3624|consen 506 DLSYPDYLNYGGIGFVIGHELTHGFDDQGRQYDESGNLRDWWDT 549 (687)
T ss_pred CcccchhhhhHHHHHHHHHHHhhcccccccccCCCcccccCCCH
Confidence 4444444455667889999999986554 455 66666
No 74
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=22.71 E-value=2.7e+02 Score=20.83 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=33.4
Q ss_pred CCChhhHHHHHHHHHHHHHcC--Ccchhhhh--H----hhhhhhcCCCchhHHHHHHHHH
Q psy7254 382 VFSPADRASLIDDAFTLSRAG--LVNATVPL--E----LSTYLLKEKDYVPWATALEHFQ 433 (567)
Q Consensus 382 ~i~~~~Ra~LidD~f~la~ag--~l~~~~~l--~----l~~yL~~E~~y~~W~~a~~~l~ 433 (567)
.+|+.+|++|+.+++.-.... .+.....- . +-.|-.++...+||..+...+.
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~~~~~~~~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir 61 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAAEAKHLILTEAQKAELDRRLADYKADPSKASPWEEVRARIR 61 (63)
T ss_pred CCCHHHHHHHHHHHHHHhccCcccCCCCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHH
Confidence 589999999999999955422 23322211 1 3334457888888988775443
No 75
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=21.22 E-value=83 Score=26.98 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=30.1
Q ss_pred eecCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy7254 362 VTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFT 397 (567)
Q Consensus 362 V~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~LidD~f~ 397 (567)
+.|..+.|..++..|.++.+.+|..=|++||+=+.-
T Consensus 49 L~~NrrLWt~~~~Dl~~p~N~LP~eLRa~lisL~~f 84 (115)
T PRK12793 49 LYFTRRLWTVLIEDLGSPENALPEELRADLISIGLW 84 (115)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 346678899999999988899999999999875443
No 76
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=21.18 E-value=50 Score=28.26 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhcccccCCc
Q psy7254 144 HNWVAVVVAHELAHQVSVVGSA 165 (567)
Q Consensus 144 ~~~~~~~iaHElaHqW~~fGnl 165 (567)
-..++.++.||++|. ||-.
T Consensus 106 gd~vthvliHEIgHh---FGLs 124 (136)
T COG3824 106 GDQVTHVLIHEIGHH---FGLS 124 (136)
T ss_pred hhHhhhhhhhhhhhh---cCCC
Confidence 346788999999999 5643
No 77
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=20.76 E-value=94 Score=28.93 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhhcc
Q psy7254 143 GHNWVAVVVAHELAHQV 159 (567)
Q Consensus 143 ~~~~~~~~iaHElaHqW 159 (567)
...++...++||+.|.+
T Consensus 121 ~~~R~~k~~~HElGH~l 137 (179)
T PRK13267 121 FEERVRKEVTHELGHTL 137 (179)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34566778999999996
No 78
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=20.23 E-value=50 Score=28.16 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=9.8
Q ss_pred HHHHHHhhhcc
Q psy7254 149 VVVAHELAHQV 159 (567)
Q Consensus 149 ~~iaHElaHqW 159 (567)
.+++||+.|..
T Consensus 109 ~~~~HEiGH~l 119 (124)
T PF13582_consen 109 DTFAHEIGHNL 119 (124)
T ss_dssp THHHHHHHHHT
T ss_pred eEeeehhhHhc
Confidence 68999999984
Done!