RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7254
(567 letters)
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 259 bits (664), Expect = 4e-81
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 7/248 (2%)
Query: 324 GGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVF 383
+ LP ++WIK NV +G+Y V Y+D WD+L LK H
Sbjct: 44 SKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAV 103
Query: 384 SPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEAS 443
S DRASLI++AF L G ++ L+LS YL E + +P L + +
Sbjct: 104 SSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRD 163
Query: 444 P---YRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKF 500
F+ ++ +LL + W D GS E+++RS +L A + V+ ++ F
Sbjct: 164 MNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYF 223
Query: 501 NGWME--KGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASR 558
W E +P ++ V+ + + W ++KY + +E+ + L ++
Sbjct: 224 RKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQ 281
Query: 559 DPWILQRF 566
+ LQ
Sbjct: 282 NKEKLQWL 289
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 263 bits (673), Expect = 1e-77
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 7/248 (2%)
Query: 324 GGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVF 383
+ T LP W+K NV+ +G+Y V Y+ H WD LI L NH +
Sbjct: 595 SSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLL 654
Query: 384 SPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEAS 443
P DR LI D F L AG + L+++ YL E L + + + + +
Sbjct: 655 RPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRN 714
Query: 444 P---YRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKF 500
++Y+ + P+ W D GS ++++RS +L A + ++++ F
Sbjct: 715 ISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELF 774
Query: 501 NGWMEKG--FRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASR 558
+ WME IP ++ ++VY G + W +Y + +E+ +L L S+
Sbjct: 775 SQWMESSGKLNIPTDVLKIVYSVGAQTTA--GWNYLLEQYELSMSSAEQNKILYALSTSK 832
Query: 559 DPWILQRF 566
L +
Sbjct: 833 HQEKLLKL 840
Score = 231 bits (591), Expect = 2e-66
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ HI+L NMP T ++ GLL D F+ +V+MSTYLVA++VCD+ +++
Sbjct: 222 IKIRRESRHIALSNMPKVKTIELE----GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGF 277
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T+ GV VS+YA PD Q +AL S ++DFYE++F + YPL K DLIAIPDF GAME
Sbjct: 278 TSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAME 337
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGLITYRETS+L+D + +SAS WV V+AHELAHQ
Sbjct: 338 NWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQ 375
Score = 50.2 bits (120), Expect = 1e-06
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 212 HNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRP 271
H+ V S + + L I C C
Sbjct: 3 HSSAMVNSHRKPMFNIHRGFYCLTAILPQI--------CICSQFSVPSSYHFT---EDPG 51
Query: 272 VIPIATSGEVFPWNNVRLPTFAHPLRYVINIHPNLTTL 309
P+AT+GE FPW +RLP+ PL Y + +HPNLT+L
Sbjct: 52 AFPVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSL 89
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 249 bits (637), Expect = 6e-73
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 7/248 (2%)
Query: 324 GGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVF 383
+ LP ++WIK NV +G+Y V Y+D WD+L LK H
Sbjct: 527 SKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAV 586
Query: 384 SPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEAS 443
S DRASLI++AF L G ++ L+LS YL E + +P L + +
Sbjct: 587 SSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRD 646
Query: 444 P---YRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKF 500
F+ ++ +LL + W D GS E+++RS +L A + V+ ++ F
Sbjct: 647 MNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYF 706
Query: 501 NGWMEKGF--RIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASR 558
W E +P ++ V+ + + W ++KY + +E+ + L ++
Sbjct: 707 RKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQ 764
Query: 559 DPWILQRF 566
+ LQ
Sbjct: 765 NKEKLQWL 772
Score = 232 bits (593), Expect = 7e-67
Identities = 78/158 (49%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ I R+ H+++ NMP+ + V GL+ D F +V+MSTYLVAF++ D+++++ +
Sbjct: 160 IKIRREPRHLAISNMPLVKSVTVA----EGLIEDHFDVTVKMSTYLVAFIISDFESVSKI 215
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
T GV VSVYA PD + QA +AL+ + +++FYE++F +PYPLPKQDL AIPDF +GAME
Sbjct: 216 TKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAME 275
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWGL TYRE+++L+D +++SAS + + VAHELAHQ
Sbjct: 276 NWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQ 313
Score = 41.7 bits (98), Expect = 6e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 282 FPWNNVRLPTFAHPLRYVINIHPNLTTL 309
FPWN +RLP + P+ Y + IH NLTTL
Sbjct: 2 FPWNKIRLPEYVIPVHYDLLIHANLTTL 29
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 214 bits (547), Expect = 6e-61
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 10/158 (6%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+++ D+ + ++ NMP + +FQ++ MSTYL+ + ++ +
Sbjct: 123 ITVVIDKDYDAISNMPPKRIEVSERK------VVEFQDTPRMSTYLLYVGIGKFRYEYEK 176
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
+ + ++K+ L+ + ++FYE +FG+PY LPK LI++P+FG GAME
Sbjct: 177 YR---DIDLILASLKDIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAME 233
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
NWG IT+RE + E ++ + A V+AHE+AHQ
Sbjct: 234 NWGAITFREIYMDIAE-NSAVTVKRNSANVIAHEIAHQ 270
Score = 206 bits (525), Expect = 6e-58
Identities = 36/231 (15%), Positives = 75/231 (32%), Gaps = 20/231 (8%)
Query: 336 MTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDA 395
+ + + IK N + +GFYRV YDD + ++ ++ SP DR L+DD
Sbjct: 461 LLEDEASIEAD-GLIKINADSAGFYRVLYDDATFSDVMG----HYRDLSPLDRIGLVDDL 515
Query: 396 FTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKL 455
F +G ++ + ++D+ + ++ F+ +
Sbjct: 516 FAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHA------FDDDARAF 569
Query: 456 LTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLR 515
+ + + L R L ++ +E F + P +R
Sbjct: 570 CRSRMQFLTGKQDENLKIALGRVSRLYVM---VDESYAEEMSKLFKDFDS----AEPEMR 622
Query: 516 EVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRF 566
+ A G + + K+ S +R ++ G + L
Sbjct: 623 SSIATAYALVTG--DLKGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTV 671
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 168 bits (428), Expect = 2e-45
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 21/152 (13%)
Query: 8 FHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSV 67
+ + I T F++ V + YL+ D + G
Sbjct: 175 LPVVFSGIRIEDTSK-------DTNIYRFEQKVPIPAYLIGIASGDLSSAPI----GPRS 223
Query: 68 SVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQD-LIAIPDFGTGAMENWGLIT 126
+VY P L ++ E Y D L+ + + G ME+ +
Sbjct: 224 TVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTF 283
Query: 127 YRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
T + +D V+AHELAH
Sbjct: 284 ATPTLLAHDRSNID---------VIAHELAHS 306
Score = 28.6 bits (64), Expect = 6.9
Identities = 6/61 (9%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 284 WNNVRLPTFAHPLRYVINIHPNLT--TLDVKVVYHFKKIRNLGGYKEQEIVWMNMTDVTF 341
+ + L +N+ + + V + KK+ G + + + ++ + +
Sbjct: 19 QSTLSNYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHE--GKNKSDELHLDTSYLDV 76
Query: 342 K 342
+
Sbjct: 77 Q 77
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 164 bits (418), Expect = 4e-44
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 17/159 (10%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
+ + ++L + + + F + V + YL+A VV ++
Sbjct: 164 AEVSVPKELVALMSAIRDGETPDPEDPSRKIYK--FIQKVPIPCYLIALVVGALESRQI- 220
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIP-DFGTGAM 119
G V++ + + ++ + + + M+ E+ G PY + DL+ +P F G M
Sbjct: 221 ---GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGM 276
Query: 120 ENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
EN L T + D+ ++ V+AH+++H
Sbjct: 277 ENPCLTFVTPTLLAGDK---------SLSNVIAHQISHS 306
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 162 bits (411), Expect = 2e-42
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 5 RDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITD----- 59
++++ + L N + ++ G F + YL A V D + ++
Sbjct: 152 KEKYPVLLSNGDKVNEFEIP----GGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITK 207
Query: 60 VTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAM 119
T K V + V++ + + ++AL M F E++FG+ Y L + +L+A+ DF GAM
Sbjct: 208 YTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAM 267
Query: 120 ENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
EN GL + S+L ++ + + + VV HE HQ
Sbjct: 268 ENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQ 306
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 159 bits (403), Expect = 4e-42
Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 22/159 (13%)
Query: 1 MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDV 60
I D+ +++ + + F + YL+A V D +
Sbjct: 168 ARITTDKDLLAVMSANNEPGTE-------RDGDYFFSMPQAIPPYLIAIGVGDLEFKAM- 219
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIP-DFGTGAM 119
+YA +L A + + M+D E+ +G Y + DL+ +P F G M
Sbjct: 220 ---SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGM 275
Query: 120 ENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
EN L T + D+ + ++AHELAH
Sbjct: 276 ENPRLSFITPTVVAGDKS---------LVNLIAHELAHS 305
Score = 29.0 bits (65), Expect = 4.5
Identities = 1/37 (2%), Positives = 8/37 (21%), Gaps = 2/37 (5%)
Query: 288 RLPTFAHPLRYVINIHPNLT--TLDVKVVYHFKKIRN 322
++++ + +L +
Sbjct: 21 ANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTD 57
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 148 bits (375), Expect = 7e-38
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 5 RDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITD----V 60
+ R+ + L N + G +++ +YL A V D D +
Sbjct: 145 KKRYPVLLSNGNKIDGGEFS----DGRHWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTM 200
Query: 61 TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
+ + V + Y P+ FA+ + + M + E FG+ Y L ++A+ DF GAME
Sbjct: 201 SGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAME 260
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
N GL + +L D + + + + VV HE H
Sbjct: 261 NKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHN 298
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 141 bits (358), Expect = 1e-35
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 5 RDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITD--VTA 62
+ ++ L N + ++ G +Q+ YL A V D+ + D T
Sbjct: 170 KIKYPFLLSNGNRVAQGELE----NGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTR 225
Query: 63 KG--VSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAIPDFGTGAME 120
G V++ +Y L +A +A+ + + M + EE FG+ Y L ++A+ F GAME
Sbjct: 226 SGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAME 285
Query: 121 NWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQ 158
N GL + +L + + + V+ HE H
Sbjct: 286 NKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHN 323
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 61/426 (14%), Positives = 127/426 (29%), Gaps = 153/426 (35%)
Query: 32 LRDDFQESVEMSTYLVAF-VVC------DYQAITDVTAKGVSVSVYAPPDLLPQAK-FAL 83
L + V+ + AF + C ++ +TD +S + L +
Sbjct: 250 LLN-----VQNAKAWNAFNLSCKILLTTRFKQVTDF----LSAATTTHISLDHHSMTL-- 298
Query: 84 NTSTHMMDFYEEFFGVPYP-LPKQ---------DLIA--IPDFGTGAMENW------GLI 125
T + ++ LP++ +IA I D +NW L
Sbjct: 299 -TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLT 356
Query: 126 TYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSAKDVN------SVLWKKQSNV 179
T E+S+ + E + + + V + S++W
Sbjct: 357 TIIESSL--NVLEPAEYRKMFDRLSVFPP------------SAHIPTILLSLIWFD---- 398
Query: 180 KMNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSL 239
+ DV V N +HK SL E + + I S+ L +
Sbjct: 399 -VIKSDVMVVV-----------NKLHKYSLVEKQ-----PKESTISIPSIYLELK----- 436
Query: 240 IIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLPTFAHPLRYV 299
++ E+ R ++ + F +++ P + +Y
Sbjct: 437 --------------------VKLENEYALHRSIVDHYNIPKTFDSDDLIPP---YLDQYF 473
Query: 300 INIHPNLTTLDVKVVYHFKKIRNLGGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSG- 358
+ H + +H K I + +V+++ ++++ +
Sbjct: 474 YS-H---------IGHHLKNIEHPERMTLFRMVFLDF-----------RFLEQKIRHDST 512
Query: 359 ----------------FYR--VTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFT-LS 399
FY+ + +D ++ L+ A+ F P +LI +T L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----FLPKIEENLICSKYTDLL 568
Query: 400 RAGLVN 405
R L+
Sbjct: 569 RIALMA 574
Score = 42.9 bits (100), Expect = 3e-04
Identities = 81/606 (13%), Positives = 166/606 (27%), Gaps = 183/606 (30%)
Query: 1 MSIFRDRF-------HISLFNMPITSTDDVGFYMGTGLLRDDF--QESVEMSTYLVAFVV 51
+S+F D F + I S +++ D + T + + +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEI----------DHIIMSKDAVSGTLRLFWTL 71
Query: 52 CDYQA-ITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEE----FFGVPYPLPKQ 106
Q + + V Y L+ K + M Y E + K
Sbjct: 72 LSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 107 DLIAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSAK 166
++ + + + R+ L + + V + + GS K
Sbjct: 130 NVSRLQPY----------LKLRQA--LLELRP-----AKNVLI---DGVL------GSGK 163
Query: 167 DV--NSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQSQNGIHKR--SLY---EHNGVAVCS 219
V + KM+ + +L + + S + + L + N +
Sbjct: 164 TWVALDVCLSYKVQCKMDFK----IFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 220 QNRALII----ASVVLSILFLS-----SLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKR 270
+ + + L L S L++ L +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLV------------------LLN-------- 252
Query: 271 PVIPIATSGEVFPWNNVRLPTFAHPLRYVINIHPNLTTLDVKVV--------YHFKKIRN 322
V N F + ++ TT +V H +
Sbjct: 253 ----------V--QNAKAWNAFNLSCKILL------TTRFKQVTDFLSAATTTHISLDHH 294
Query: 323 LGGYKEQEIV-----WMNMTDVTFKLPNS--------IKWIKANVNQSGFYRVTYDDHL- 368
E+ +++ LP + I ++ + G H+
Sbjct: 295 SMTLTPDEVKSLLLKYLDCR--PQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVN 351
Query: 369 WDALIQALKTNHEVFSPADRASLIDDAF-----------TLSR--AGLVNATVPL---EL 412
D L ++++ V PA+ + D LS ++ + V + +L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 413 STYLLKEKDYVPWATALEHFQHWSTSLSEASPY----RLFEQY--VKKL----LTP---- 458
Y L EK ++ + + + Y + + Y K L P
Sbjct: 412 HKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 459 --ISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNG--WMEKGFRIPPNL 514
HIG HL+ + + + +V +D E K + + W G I L
Sbjct: 471 QYFYSHIGH-----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTL 524
Query: 515 REVVYY 520
+++ +Y
Sbjct: 525 QQLKFY 530
Score = 39.1 bits (90), Expect = 0.005
Identities = 54/315 (17%), Positives = 93/315 (29%), Gaps = 82/315 (26%)
Query: 274 PIATSGEVFPWNNV-RLPTFAHPLRYVINIHPNLTTLDV--KVVYHFKKIRNLGGYKEQE 330
+ +VF NV RL + + L L V+ + G +
Sbjct: 118 RLYNDNQVFAKYNVSRLQP-------YLKLRQALLELRPAKNVLID-----GVLGSGKTW 165
Query: 331 IVWMNMTD--VTFKLPNSIKWIK-ANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPAD 387
+ V K+ I W+ N N + +++ L+ P +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSP------------ETVLEMLQKLLYQIDP-N 212
Query: 388 RASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRL 447
S D + + L ++ EL LLK K Y L + + A
Sbjct: 213 WTSRSDHSSNIK---LRIHSIQAELR-RLLKSKPYENCLLVLLNV--QNAKAWNA----- 261
Query: 448 FEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVV-----------KES 496
F K LLT T R + + T + E
Sbjct: 262 FNLSCKILLT----------T--------RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 497 KSKFNGWME-KGFRIPP-----NLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSERKLL 550
KS +++ + +P N R + A G+ W N W N ++ + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESS 362
Query: 551 LKVLGASRDPWILQR 565
L VL +P ++
Sbjct: 363 LNVL----EPAEYRK 373
Score = 36.4 bits (83), Expect = 0.029
Identities = 45/289 (15%), Positives = 80/289 (27%), Gaps = 88/289 (30%)
Query: 309 LDVKVVYHFKKIRNLGGYKEQEIVWMNMTDVTFKLPNSIK------WIKANVNQSGFYR- 361
D K V K ++EI D +++ W + + +
Sbjct: 33 FDCKDVQDMPK----SILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 362 ---VTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLK 418
V ++ + L+ +KT E P S++ + R L N
Sbjct: 83 VEEVLRINYKF--LMSPIKT--EQRQP----SMMTRMYIEQRDRLYNDNQVFA------- 127
Query: 419 EKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRS 478
K V L+ + +L E P + V + G +G K
Sbjct: 128 -KYNVS---RLQPYLKLRQALLELRP----AKNV------LID--GVLGSG----K---- 163
Query: 479 DILAAAVLVGVDTVVKESKSKFNG---WMEKG----------------FRIPPNLREVV- 518
+A V + V+ K + W+ ++I PN
Sbjct: 164 TWVALDVCL--SYKVQC---KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 519 YYAGIKYGGVKEWQNCWAKYNSTRVPSERKLLLKVLGASRDPWILQRFD 567
+ + IK + P E LL VL ++ F+
Sbjct: 219 HSSNIKLR--IHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFN 263
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.006
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 55 QAITDVTAKGVSVSVYAPPDLLPQAKFALNTS 86
QA+ + A S+ +YA D P A A+ +
Sbjct: 20 QALKKLQA---SLKLYA-DDSAP-A-LAIKAT 45
Score = 32.2 bits (72), Expect = 0.18
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 373 IQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATV 408
++ L+ + ++++ D A L+ + AT+
Sbjct: 22 LKKLQASLKLYAD-------DSAPALA----IKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.007
Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 77/249 (30%)
Query: 318 KKIRNLGGYKEQEIVWMNMTDVT--FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQA 375
++ G+ +IV N ++T F K I+ N Y +++ ++
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIREN----------YSAMIFETIVDG 1699
Query: 376 LKTNHEVFSPADRASLIDDAFTLSRAGLVNATV---P----LELSTY-LLKEKDYVPWAT 427
++F + F S GL++AT P +E + + LK K +P
Sbjct: 1700 KLKTEKIFKEINE-HSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 428 ALE-HFQHWSTSLSE--ASPYRLFEQYVKKLLTPISHHIGWEDT-------GSHLEKLM- 476
H SL E A L ++ + E G ++ +
Sbjct: 1758 TFAGH------SLGEYAA-------------LASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 477 -----RSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGGVKEW 531
RS+ A+ G V F+ E L+ VV G + G + E
Sbjct: 1799 RDELGRSNYGMIAINPG--RVAA----SFS--QEA-------LQYVVERVGKRTGWLVEI 1843
Query: 532 QNCWAKYNS 540
N YN
Sbjct: 1844 VN----YNV 1848
Score = 37.3 bits (86), Expect = 0.017
Identities = 61/385 (15%), Positives = 108/385 (28%), Gaps = 131/385 (34%)
Query: 202 NGIHKRSLYEHNGVAVCSQN--RALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPV- 258
+ R L +G A + L F L G D ++P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-----DEPTT 56
Query: 259 -------FLQ------DEDLNGAKRPVIPIATSGEVFPWNNVRLPTFAHPLRYV--INIH 303
FL + G V+ + L F + Y+ +IH
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLC------------LTEFEN--CYLEGNDIH 102
Query: 304 PNLTTL----DVKVVYHFKKIRNLGGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGF 359
L D +V + I+N Y I+ K NS + +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKN---YITARIM---AKRPFDKKSNSALFRAVGEGNAQL 156
Query: 360 YRV--------TYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN-ATVPL 410
+ Y ++ L + L ++ + L+ D S L L
Sbjct: 157 VAIFGGQGNTDDY----FEEL-RDL---YQTYHV-----LVGDLIKFSAETLSELIRTTL 203
Query: 411 ELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLT-PIS--------- 460
+ + + + W LE+ +P + Y LL+ PIS
Sbjct: 204 DAEKVFTQGLNILEW---LEN--------PSNTPD---KDY---LLSIPISCPLIGVIQL 246
Query: 461 -HHI------GWEDTGSHLEKLMRS------DILAAAVLVGVDT-------VVKESKSKF 500
H++ G+ T L ++ ++ A + D+ V K F
Sbjct: 247 AHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 501 NGWMEKGFR---------IPPNLRE 516
++ G R +PP++ E
Sbjct: 305 --FI--GVRCYEAYPNTSLPPSILE 325
Score = 30.4 bits (68), Expect = 2.0
Identities = 43/263 (16%), Positives = 66/263 (25%), Gaps = 131/263 (49%)
Query: 6 DRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGV 65
+ ISL N + VV G
Sbjct: 364 KQVEISLVNGA----------------K--------------NLVVS-----------GP 382
Query: 66 SVSVY----------APPDLLPQAK--FALNTSTHMMDFYEEFF--GVPY---------P 102
S+Y AP L Q++ F S + F F P+
Sbjct: 383 PQSLYGLNLTLRKAKAPSG-LDQSRIPF----SERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 103 LPKQDL-----------IAIPDFGTGAMENWGLITYRETSILYDEQETSASGHNWVAVVV 151
L +DL I IP + T + D + S S +
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDT---FDG-----------SDLRVLSGS--------I 475
Query: 152 AHELAHQVSVVGSAKDVNSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQSQNGIHKRSLYE 211
+ + + + V W+ + K H +D F G +G+ L
Sbjct: 476 SERIVDCIIRL-------PVKWETTTQFKAT-HILD---FGPG-----GASGLGV--LTH 517
Query: 212 HN----GVAVCSQNRALIIASVV 230
N GV V I+A +
Sbjct: 518 RNKDGTGVRV-------IVAGTL 533
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 32.7 bits (74), Expect = 0.35
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 158 QVSVVGSAKDVNS--VLWKKQSNVKMNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGV 215
++V SA + + W+ + HD T + + GI +
Sbjct: 67 LINVTSSADETLNSFGEWRASDLMTRKSHDN--ALLFTDMRFDLNTLGITFLA------- 117
Query: 216 AVCSQNRALIIASVVLSILFLSSLIIAY-----VGPQND---CPC 252
+C R++ I + F +++I+A+ +G +D C C
Sbjct: 118 GMCQAYRSVGIVQEQGNRNFKTAVIMAHELSHNLGMYHDGKNCIC 162
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 31.9 bits (72), Expect = 0.62
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 158 QVSVVGSAKDV--NSVLWKKQSNVKMNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGV 215
++ V SA W+ + HD LTG+N G L G+
Sbjct: 74 KIIVQSSADVTLDLFAKWRATDLLSRKSHDN--AQLLTGINFNGPTAG-----LGYLGGI 126
Query: 216 AVCSQNRALIIASVVLSILFLSSLIIAY-----VGPQND---CPC 252
C+ + I I L ++ +A+ +G +D C C
Sbjct: 127 --CNTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTC 169
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 31.5 bits (71), Expect = 0.79
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 158 QVSVVGSAKDV-NSVL-WKKQSNVKMNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGV 215
+ V +A S W++ + +D LTG++ + G
Sbjct: 67 KFEVKPAASVTLKSFGEWRETVLLPRKRNDN--AQLLTGIDFNGNTVGRAYIG------- 117
Query: 216 AVCSQNRALIIASVVLSILFLSSLIIAY-----VGPQND---CPC 252
++C N ++ I + L + I + +G +D C C
Sbjct: 118 SLCKTNESVAIVQDYNRRISLVASTITHELGHNLGIHHDKASCIC 162
>4dv8_A Lethal factor; endopeptidase, zinc dependent, hydrolase; HET: 0LX;
1.63A {Bacillus anthracis} PDB: 1yqy_A* 2l0r_A
Length = 526
Score = 31.4 bits (70), Expect = 0.81
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 422 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 459
Y W +H+QHWS SLSE +KKL PI
Sbjct: 18 YEKWEKIKQHYQHWSDSLSEEG-----RGLLKKLQIPI 50
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 29.6 bits (67), Expect = 2.3
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 158 QVSVVGSAKDV-NSVL-WKKQSNVKMNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGV 215
+ V ++L W+ + + + HD V +TGV+ + G + S
Sbjct: 62 RFHVSPDPSVTLENLLTWQARQRTRRHLHDN--VQLITGVDFTGTTVGFARVS------- 112
Query: 216 AVCSQNRALIIASVVLSILFLSSLI---------IAYVGPQNDCPCIGEKP 257
A+CS + + + + ++ + + + C C
Sbjct: 113 AMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFE 163
Score = 27.7 bits (62), Expect = 8.8
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 126 TYRETSILYDEQETSASGHNWVAVVVAHELAH 157
++ ++ D + VA +AHE+ H
Sbjct: 116 SHSSGAVNQDHSKNPVG----VACTMAHEMGH 143
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
APC7539, PSI-2, protein structure initiative; 2.46A
{Archaeoglobus fulgidus dsm 4304}
Length = 110
Score = 27.6 bits (62), Expect = 4.4
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 481 LAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGGVK 529
A G + + K + + +K F L+E
Sbjct: 60 FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGK-LEE--LLKAG 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,984,166
Number of extensions: 551092
Number of successful extensions: 1147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 38
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.6 bits)