RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7254
         (567 letters)



>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 80.1 bits (196), Expect = 2e-17
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 64  GVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQDLIAI-PDFGTGAMENW 122
           G    V++  + + ++ +  + +  M+   E+  G PY   + DL+ + P F  G MEN 
Sbjct: 7   GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP 65

Query: 123 GLITYRETSILYDEQETSASGHNWVAVVVAHELAHQVSVVGSAKDVNSVLWKKQSNVKMN 182
            L     T +         +G   ++ V+AH+++H  +            W  + +    
Sbjct: 66  CLTFVTPTLL---------AGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYL 116

Query: 183 DHDVDDVAFLTGVNHYQSQNGIHKRSLYEHN 213
           +  +    F     H+ +  G  +       
Sbjct: 117 ERHICGRLFGEKFRHFNALGGWGELQNSVKT 147


>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 208

 Score = 34.8 bits (79), Expect = 0.016
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 1   MSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVV 51
             +   +  ++L +                     F + V +  YL+A VV
Sbjct: 158 AEVSVPKELVALMSAIRDGETPDP--EDPSRKIYKFIQKVPIPCYLIALVV 206


>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
           domain {Bacillus anthracis [TaxId: 1392]}
          Length = 287

 Score = 29.6 bits (66), Expect = 0.94
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 422 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 459
           Y  W    +H+QHWS SLSE          +KKL  PI
Sbjct: 5   YEKWEKIKQHYQHWSDSLSEEG-----RGLLKKLQIPI 37


>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp.,
           strain TB-90 [TaxId: 1409]}
          Length = 154

 Score = 27.1 bits (60), Expect = 3.8
 Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 361 RVTYDDHLWDALIQ-ALKTNHEVFSPADRAS-LIDDAFTLSR 400
                +H WD +++   ++  +V++            FT+++
Sbjct: 113 YFESQNHTWDKIVEEIPESEGKVYTEPRPPYGFQ--CFTVTQ 152


>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 89

 Score = 25.6 bits (56), Expect = 5.9
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 336 MTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDA 395
            T++  +L +    +    N S          + DA      T+  + +      L D+ 
Sbjct: 14  TTNIQIRLADG-GRLVQKFNHSHRISDIRL-FIVDARPAMAATSFVLMTTFPNKELADEN 71

Query: 396 FTLSRAGLVNATVPLELS 413
            TL  A L+NA +   L+
Sbjct: 72  QTLKEANLLNAVIVQRLT 89


>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 180

 Score = 26.5 bits (58), Expect = 6.8
 Identities = 5/34 (14%), Positives = 10/34 (29%), Gaps = 4/34 (11%)

Query: 26  YMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITD 59
           Y+  G+  +               +V  YQ   +
Sbjct: 151 YLNEGMSEEQINVLRAS----AQELVQSYQVAEE 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,191,334
Number of extensions: 103841
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 10
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)