BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7255
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 154 NSTRVPSERKLLLKVLGASRDPWILQR----TAHP----RPDQTFGV-SVHVDITAAGLQ 204
N+T V +E L L S++ WIL R T +P + D T + S+ ++ GL
Sbjct: 754 NATLV-NEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLV 812
Query: 205 ------------NLFGNGTFSMGALIGVVTSHFSAPYDLHE 233
N +G G+FS LI VT FS Y+L +
Sbjct: 813 WDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQ 853
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 61 RIMMLEFSQYLENYLWPNYKTGEASHEHLMSIVIMTNEKFRERVNAWETFRKHPEH 116
R++ EF ++ ++ W + E+S +++ V + + VN W T HP+H
Sbjct: 246 RVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGA---DPVNGWPTVPLHPDH 298
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 27/148 (18%)
Query: 107 WETFRKHPEHFPGLFHHVLETTLKSSAVLMSEQTALVVFLNHCFNSMNSTRVPSERKLLL 166
++ + PE+ P H L +T+ +A+ Q + + + ++ +E L
Sbjct: 711 FDQWMSDPENNP--IHPNLRSTIYCNAIAQGGQDQW----DFAWGQLQQAQLVNEADKLR 764
Query: 167 KVLGASRDPWILQR----TAHP----RPDQT----------FGVSVHVDITAAGLQNLF- 207
L S + W+L R T +P + D T G + D + + LF
Sbjct: 765 SALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQ 824
Query: 208 --GNGTFSMGALIGVVTSHFSAPYDLHE 233
G G+FS LI VT FS+ ++L +
Sbjct: 825 DYGGGSFSFSNLIQGVTRRFSSEFELQQ 852
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 27/148 (18%)
Query: 107 WETFRKHPEHFPGLFHHVLETTLKSSAVLMSEQTALVVFLNHCFNSMNSTRVPSERKLLL 166
++ + PE+ P H L +T+ +A+ Q + + + ++ +E L
Sbjct: 711 FDQWMSDPENNP--IHPNLRSTIYCNAIAQGGQDQW----DFAWGQLQQAQLVNEADKLR 764
Query: 167 KVLGASRDPWILQR----TAHP----RPDQT----------FGVSVHVDITAAGLQNLF- 207
L S + W+L R T +P + D T G + D + + LF
Sbjct: 765 SALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQ 824
Query: 208 --GNGTFSMGALIGVVTSHFSAPYDLHE 233
G G+FS LI VT FS+ ++L +
Sbjct: 825 DYGGGSFSFSNLIQGVTRRFSSEFELQQ 852
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 27/148 (18%)
Query: 107 WETFRKHPEHFPGLFHHVLETTLKSSAVLMSEQTALVVFLNHCFNSMNSTRVPSERKLLL 166
++ + PE+ P H L +T+ +A+ Q + + + ++ +E L
Sbjct: 712 FDQWMSDPENNP--IHPNLRSTIYCNAIAQGGQDQW----DFAWGQLQQAQLVNEADKLR 765
Query: 167 KVLGASRDPWILQR----TAHP----RPDQT----------FGVSVHVDITAAGLQNLF- 207
L S + W+L R T +P + D T G + D + + LF
Sbjct: 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQ 825
Query: 208 --GNGTFSMGALIGVVTSHFSAPYDLHE 233
G G+FS LI VT FS+ ++L +
Sbjct: 826 DYGGGSFSFSNLIQGVTRRFSSEFELQQ 853
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 27/148 (18%)
Query: 107 WETFRKHPEHFPGLFHHVLETTLKSSAVLMSEQTALVVFLNHCFNSMNSTRVPSERKLLL 166
++ + PE+ P H L +T+ +A+ Q + + + ++ +E L
Sbjct: 755 FDQWMSDPENNP--IHPNLRSTIYCNAIAQGGQDQW----DFAWGQLQQAQLVNEADKLR 808
Query: 167 KVLGASRDPWILQR----TAHP----RPDQT----------FGVSVHVDITAAGLQNLF- 207
L S + W+L R T +P + D T G + D + + LF
Sbjct: 809 SALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQ 868
Query: 208 --GNGTFSMGALIGVVTSHFSAPYDLHE 233
G G+FS LI VT FS+ ++L +
Sbjct: 869 DYGGGSFSFSNLIQGVTRRFSSEFELQQ 896
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFS--APYDLHESRREQELRNVPKWR--KYWKLIMK 255
A L ++ GNGT S ++ +VT+ F +P D ++ E N P+ R K W K
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPED---TKHLPEDENTPEKRAEKIWGFFGK 160
Query: 256 KDNPEEKEKLEWERKYLHKIMLKFL 280
KD+ + EK E +K +L+ +
Sbjct: 161 KDDDKLTEKEFIEGTLANKEILRLI 185
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFS--APYDLHESRREQELRNVPKWR--KYWKLIMK 255
A L ++ GNGT S ++ +VT+ F +P D ++ E N P+ R K W K
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPED---TKHLPEDENTPEKRAEKIWGFFGK 160
Query: 256 KDNPEEKEKLEWERKYLHKIMLKFL 280
KD+ + EK E +K +L+ +
Sbjct: 161 KDDDKLTEKEFIEGTLANKEILRLI 185
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFS--APYDLHESRREQELRNVPKWR--KYWKLIMK 255
A L ++ GNGT S ++ +VT+ F +P D ++ E N P+ R K W K
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPED---TKHLPEDENTPEKRAEKIWGFFGK 160
Query: 256 KDNPEEKEKLEWERKYLHKIMLKFL 280
KD+ + EK E +K +L+ +
Sbjct: 161 KDDDKLTEKEFIEGTLANKEILRLI 185
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFS--APYDLHESRREQELRNVPKWR--KYWKLIMK 255
A L ++ GNGT S ++ +VT+ F +P D ++ E N P+ R K W K
Sbjct: 105 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPED---TKHLPEDENTPEKRAEKIWGFFGK 161
Query: 256 KDNPEEKEKLEWERKYLHKIMLKFL 280
KD+ + EK E +K +L+ +
Sbjct: 162 KDDDKLTEKEFIEGTLANKEILRLI 186
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFS--APYDLHESRREQELRNVPKWR--KYWKLIMK 255
A L ++ GNGT S ++ +VT+ F +P D ++ E N P+ R K W K
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPED---TKHLPEDENTPEKRAEKIWGFFGK 160
Query: 256 KDNPEEKEKLEWERKYLHKIMLKFL 280
KD+ + EK E +K +L+ +
Sbjct: 161 KDDDKLTEKEFIEGTLANKEILRLI 185
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFS--APYDLHESRREQELRNVPKWR--KYWKLIMK 255
A L ++ GNGT S ++ +VT+ F +P D ++ E N P+ R K W K
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPED---TKHLPEDENTPEKRAEKIWGFFGK 160
Query: 256 KDNPEEKEKLEWERKYLHKIMLKFL 280
KD+ + EK E +K +L+ +
Sbjct: 161 KDDDKLTEKEFIEGTLANKEILRLI 185
>pdb|2KC5|A Chain A, Solution Structure Of Hybe From Escherichia Coli
Length = 162
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 170 GASRDPWILQRTAHPRPDQTFGV-SVHVDITAAGLQNLFGNGTFSMGALIGV 220
G PW+L P PDQ + + V I GLQ +G TF++G L GV
Sbjct: 54 GCVITPWMLSAVIFPGPDQLWPLRKVSEKI---GLQLPYGTMTFTVGELDGV 102
>pdb|3W2Z|A Chain A, Crystal Structure Of The Cyanobacterial Protein
Length = 198
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 222 TSHFSAPYDLHESRREQELRNVPKW--RKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKF 279
HFS ++ E + VP + K W L+ N +E +EWE +L ++ L+F
Sbjct: 117 AGHFSCHLEILEQFEIKAYIIVPVFAAEKLWGLLAAYQNSGTREWVEWESSFLTQVGLQF 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,978,364
Number of Sequences: 62578
Number of extensions: 358355
Number of successful extensions: 761
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 21
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)