Query psy7255
Match_columns 289
No_of_seqs 106 out of 133
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 22:00:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iao_A NAD-dependent histone d 29.5 27 0.00092 34.6 2.6 127 66-217 76-210 (492)
2 3o2t_A Symplekin; heat repeat, 11.8 2.1E+02 0.0072 27.1 4.4 57 109-169 53-109 (386)
3 3ns4_A Vacuolar protein sortin 10.8 94 0.0032 28.8 1.5 54 235-288 153-216 (271)
4 4a9c_A Phosphatidylinositol-3, 10.8 84 0.0029 29.0 1.2 44 193-241 108-161 (316)
5 1v63_A Nucleolar transcription 10.1 3.9E+02 0.013 20.1 4.6 38 230-267 47-88 (101)
6 3k8p_C DSL1, KLLA0C02695P; int 10.0 9.9E+02 0.034 22.9 8.3 83 53-150 161-245 (357)
7 1v64_A Nucleolar transcription 9.8 2.9E+02 0.0098 21.1 3.8 32 139-177 22-53 (108)
8 2qkg_A Insecticidal delta-endo 9.1 1.8E+02 0.0062 28.9 3.0 22 59-82 207-228 (589)
9 1xs0_A Inhibitor of vertebrate 9.0 1.4E+02 0.0048 25.0 1.8 19 239-257 8-26 (136)
10 3u5c_T 40S ribosomal protein S 8.9 2.3E+02 0.008 23.9 3.2 41 9-49 3-67 (144)
No 1
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=29.52 E-value=27 Score=34.64 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=64.6
Q ss_pred hhhhhHhhhcCCCCCCCCCchhHHHHHHHHHhHhhhcc--cccccccccCCCC-chHHHHHHHhhcccccccchhhHHHH
Q psy7255 66 EFSQYLENYLWPNYKTGEASHEHLMSIVIMTNEKFRER--VNAWETFRKHPEH-FPGLFHHVLETTLKSSAVLMSEQTAL 142 (289)
Q Consensus 66 EfsQYLEnYLWPny~~~~aS~~HvmSIviMvNeKfRE~--v~aW~~F~~~pe~-F~~fF~rVL~l~l~~~~~~~~Eqt~l 142 (289)
=..+||+.|| |++++..|+..+|.++.-.-+.+ +..-.-+-+..+. =+.==.+.|..+-.+..+.-++-.-|
T Consensus 76 g~~~f~~~~~-----~~~~~~~~~~~~~~~lgf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (492)
T 4iao_A 76 GAHKFLDTYL-----PEDLNSLYIYYLIKLLGFEVKDQALIGTINSIVHINSQERVQDLGSAISVTNVEDPLAKKQTVRL 150 (492)
T ss_dssp HHHHHHHHHS-----CSSCCTTHHHHHHHHTTEEECCHHHHHHHHHHC---------------------CCSCHHHHHHH
T ss_pred CHHHHHHHhC-----CCCcchHHHHHHHHHhCCccchHHHHHHHHHHhhhhhhhccccccchhccccccCchhHHHHHHH
Confidence 3567899988 77888899999998886543332 2111000000000 00000011111110111222233457
Q ss_pred HHHHHhhhhccccccch----HHHHhhhhhcCCCCCCcccccccCCCCCCCcccccchhhhhhhcccccCCCccc-cccc
Q psy7255 143 VVFLNHCFNSMNSTRVP----SERKLLLKVLGASRDPWILQRTAHPRPDQTFGVSVHVDITAAGLQNLFGNGTFS-MGAL 217 (289)
Q Consensus 143 l~FLihcFqSle~~~Vr----~e~~~Lvsl~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 217 (289)
|-.|..+++-.-..+.| ..+..|+.+|..++.+=. +||||+..-=|=-+|- .+|+
T Consensus 151 ~~~l~~~~~r~~~~r~kl~~~~~i~~l~~~L~~ak~IVV--------------------LTGAGISTeSGIPDFRs~~GL 210 (492)
T 4iao_A 151 IKDLQRAINKVLCTRLRLSNFFTIDHFIQKLHTARKILV--------------------LTGAGVSTSLGIPDFRSSEGF 210 (492)
T ss_dssp HHHHHHHHHHHHTSCCCCTTCCSHHHHHHHHHHCSCEEE--------------------EECGGGGGGGTCCCSSSTTSH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCcEEE--------------------EeCcccccccCCccccCchHH
Confidence 88888888877655543 234555666544444333 7899988877777773 4443
No 2
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=11.81 E-value=2.1e+02 Score=27.12 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=44.9
Q ss_pred ccccCCCCchHHHHHHHhhcccccccchhhHHHHHHHHHhhhhccccccchHHHHhhhhhc
Q psy7255 109 TFRKHPEHFPGLFHHVLETTLKSSAVLMSEQTALVVFLNHCFNSMNSTRVPSERKLLLKVL 169 (289)
Q Consensus 109 ~F~~~pe~F~~fF~rVL~l~l~~~~~~~~Eqt~ll~FLihcFqSle~~~Vr~e~~~Lvsl~ 169 (289)
.|.+.|+-++.||..+|++..+. ...-|..++-||--+|.. ..+.+.+.+.-|..+|
T Consensus 53 ~l~~dpsLl~~fl~~il~f~~d~---~~~vRk~~a~FieEa~~~-~~el~~~~l~~L~~LL 109 (386)
T 3o2t_A 53 IINKDPTLLDNFLDEIIAFQADK---SIEVRKFVIGFIEEACKR-DIELLLKLIANLNMLL 109 (386)
T ss_dssp HHTTCGGGGGGGHHHHHGGGGCS---CHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 46689999999999999998876 466788999999888863 5666766666666664
No 3
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=10.81 E-value=94 Score=28.84 Aligned_cols=54 Identities=19% Similarity=0.421 Sum_probs=34.2
Q ss_pred HHHHHHhcCc----chHHHHHHHhccCCh-HHHhHHHHHH-----HHHHHHHHHHHHHhcCCCC
Q psy7255 235 RREQELRNVP----KWRKYWKLIMKKDNP-EEKEKLEWER-----KYLHKIMLKFLNVVENIPE 288 (289)
Q Consensus 235 rre~eL~~~p----klrK~Wk~~~Kk~~~-~~kekl~~Er-----~fL~~Lm~~Fl~vl~~ip~ 288 (289)
+.=.+|+..| .|+|||..+..+.++ ++.++.+-++ .|=.+++..|-.-|-.|.+
T Consensus 153 ~KIL~LKGv~wdl~~wk~~~~~f~l~~~~~~~~~~~~~~~~~fif~w~~~~l~~F~~nl~ri~d 216 (271)
T 3ns4_A 153 SFVLALKGIPWDLALWKKMWSAYNLETDDTDEGSRPDSNRDLFIFKWDKVLLGQFENNLARMQD 216 (271)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHHHC-----------CCCCGGGGGCHHHHHHHHHHHHTCCS
T ss_pred HHHHHhcCCCccHHHHHHHHHHHhhccccccccCCCCcccceEEEecCHHHHHHHHHHhHhcCC
Confidence 6778899997 799999999998743 3332222222 3446788888877777654
No 4
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=10.80 E-value=84 Score=28.99 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=25.6
Q ss_pred ccchhhhhhhcccccCCCccccccc----------cccccccCCCCCCCCHHHHHHHHh
Q psy7255 193 SVHVDITAAGLQNLFGNGTFSMGAL----------IGVVTSHFSAPYDLHESRREQELR 241 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~L~~~rre~eL~ 241 (289)
.|.++..+.|+....|| |||+ +-+|++|+.+-.. ...+|.+.++
T Consensus 108 ~v~~~~v~tG~~g~~GN----KGaV~ir~~~~~ts~~FVn~HLaAg~~-~~~~Rn~d~~ 161 (316)
T 4a9c_A 108 HVSTSSVKTGIANTLGN----KGAVGVSFMFNGTSFGFVNCHLTSGNE-KTARRNQNYL 161 (316)
T ss_dssp EEEEEEEEEC------C----EEEEEEEEEETTEEEEEEEEECCCSTT-CHHHHHHHHH
T ss_pred ccccceeeeeeeEecCC----CceEEEEEEECCcEEEEEEeccccCch-HHHHHHHHHH
Confidence 45666777888888887 6664 4679999998554 3466766543
No 5
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=10.08 E-value=3.9e+02 Score=20.08 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHhcCcchHHHHHHHhccC----ChHHHhHHHH
Q psy7255 230 DLHESRREQELRNVPKWRKYWKLIMKKD----NPEEKEKLEW 267 (289)
Q Consensus 230 ~L~~~rre~eL~~~pklrK~Wk~~~Kk~----~~~~kekl~~ 267 (289)
+|+++.++--....-+++...+.-++.+ .++.+..+.-
T Consensus 47 ~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~~~~~~~~ 88 (101)
T 1v63_A 47 RISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKE 88 (101)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9998766544444334444444433333 4555444433
No 6
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=9.97 E-value=9.9e+02 Score=22.88 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=48.5
Q ss_pred hhcCCcchhHHHHhhhhhHhhhcCCCCCCCCCchhHHHHHHHHHhHhh--hcccccccccccCCCCchHHHHHHHhhccc
Q psy7255 53 IGCNFAIRRIMMLEFSQYLENYLWPNYKTGEASHEHLMSIVIMTNEKF--RERVNAWETFRKHPEHFPGLFHHVLETTLK 130 (289)
Q Consensus 53 ~~~~F~~rrim~LEfsQYLEnYLWPny~~~~aS~~HvmSIviMvNeKf--RE~v~aW~~F~~~pe~F~~fF~rVL~l~l~ 130 (289)
+.++-.+.||+-| .+.|||++|= ....+|..+|-+----| -|+-|.|..-.+ .--|-+=+.++....+
T Consensus 161 ~~~~~~l~rl~EL-~~~~le~~l~-------~~~k~v~~lv~~qL~~l~~nE~~p~W~~t~~--~LlP~i~~~i~~pl~k 230 (357)
T 3k8p_C 161 YTENPKLLQLMEL-NSRRLDLNLN-------LIKKTIYKLVNDQLQELKDNERTPDWDITIS--SLLPYLKKTALPTLYK 230 (357)
T ss_dssp HHHCTTCHHHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTSSSCCCHHHHH--THHHHHHHTHHHHHHT
T ss_pred HhcChhhHHHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHhhhHhhc
Confidence 4556678888887 5789999873 44457777776543333 367899966433 2234444445544433
Q ss_pred ccccchhhHHHHHHHHHhhh
Q psy7255 131 SSAVLMSEQTALVVFLNHCF 150 (289)
Q Consensus 131 ~~~~~~~Eqt~ll~FLihcF 150 (289)
.+ -+..++.|++-.|
T Consensus 231 ~~-----~~~~l~~lvnfi~ 245 (357)
T 3k8p_C 231 LE-----DNTILVALIRYIV 245 (357)
T ss_dssp TC-----CHHHHHHHHHHHH
T ss_pred ch-----HHHHHHHHHHHHH
Confidence 21 2444445544444
No 7
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=9.83 E-value=2.9e+02 Score=21.11 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhccccccchHHHHhhhhhcCCCCCCcc
Q psy7255 139 QTALVVFLNHCFNSMNSTRVPSERKLLLKVLGASRDPWI 177 (289)
Q Consensus 139 qt~ll~FLihcFqSle~~~Vr~e~~~Lvsl~~~~~~~W~ 177 (289)
.+++++|...+...+- .+--.++...++ ..|.
T Consensus 22 ~say~lF~~e~r~~~k-~~~~~eisk~lg------~~Wk 53 (108)
T 1v64_A 22 PNSYSLYCAELMANMK-DVPSTERMVLCS------QQWK 53 (108)
T ss_dssp SSHHHHHHHHHHHHCT-TSCHHHHHHHHH------HHHH
T ss_pred CCHHHHHHHHHHHHHh-CCCHHHHHHHHH------HHHH
Confidence 5788899988888765 333455555554 4788
No 8
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=9.07 E-value=1.8e+02 Score=28.94 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.5
Q ss_pred chhHHHHhhhhhHhhhcCCCCCCC
Q psy7255 59 IRRIMMLEFSQYLENYLWPNYKTG 82 (289)
Q Consensus 59 ~rrim~LEfsQYLEnYLWPny~~~ 82 (289)
.||-|.|=...|.. |||+||+.
T Consensus 207 yRr~MTl~VLD~Va--lfp~yD~~ 228 (589)
T 2qkg_A 207 FRREMTLSVLDIMT--LFPMYDMR 228 (589)
T ss_dssp HHHHHHHHTHHHHH--TGGGGCTT
T ss_pred HHHHHHHHHHHHHH--HHHhcChh
Confidence 68999999999985 99999975
No 9
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=9.04 E-value=1.4e+02 Score=24.99 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=17.3
Q ss_pred HHhcCcchHHHHHHHhccC
Q psy7255 239 ELRNVPKWRKYWKLIMKKD 257 (289)
Q Consensus 239 eL~~~pklrK~Wk~~~Kk~ 257 (289)
+|...|..|+.|+.++|+.
T Consensus 8 ~L~~dp~yr~aw~~mvk~~ 26 (136)
T 1xs0_A 8 SLAKGETTKAAFNQMVQGH 26 (136)
T ss_dssp HHHHCTTTHHHHHHHHTTS
T ss_pred HHhcCHHHHHHHHHHHhcC
Confidence 6889999999999999985
No 10
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=8.87 E-value=2.3e+02 Score=23.86 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=28.5
Q ss_pred Ccchhhhhhch-HHHHHhhc----------cCCCCC----CCCCCCChh---------hHHHHHH
Q psy7255 9 APTVYQINKDR-ITEVAGKY----------WAPHSE----GSHLPYDAN---------IVTQIYR 49 (289)
Q Consensus 9 ~pTv~~i~~D~-it~lA~ky----------Wap~~~----~~~~~~d~~---------vv~~Iy~ 49 (289)
..||+|+..|. |..+|..- |+..-+ ....|+|++ |+..||-
T Consensus 3 ~~tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kEl~P~d~D~W~Y~RaASi~R~lYl 67 (144)
T 3u5c_T 3 GVSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYM 67 (144)
T ss_dssp CCCSTTSCHHHHHHHHHHHHHHHCCCCCTTTTTSCCSCTTCSSCCSSCSSSHHHHHHHHHHHHHT
T ss_pred CCceeecCHHHHHHHHHHHHHHcCCCCCCchHhHhhccccccCCCCCCcchHHHHHHHHHHHHHh
Confidence 47999999988 55666432 765422 245689988 8888883
Done!