Query psy7255
Match_columns 289
No_of_seqs 106 out of 133
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 22:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7255.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7255hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gmha2 d.16.1.8 (A:237-335) E 47.0 6.2 0.00045 29.4 3.0 35 216-251 50-85 (99)
2 d1gvha1 a.1.1.2 (A:1-146) Flav 18.1 7.1 0.00052 29.0 -1.4 74 95-168 1-84 (146)
3 d1dlca3 f.1.3.1 (A:61-289) del 15.0 23 0.0017 28.6 1.0 21 59-81 208-228 (229)
4 d1u3ha1 b.1.1.1 (A:2-116) T-ce 11.9 23 0.0017 24.2 0.1 22 191-212 84-105 (110)
5 d1v64a_ a.21.1.1 (A:) Nucleola 11.4 75 0.0055 22.3 2.9 28 230-257 54-81 (108)
6 d1jkva_ a.25.1.3 (A:) Manganes 10.7 2.2E+02 0.016 23.8 6.1 38 230-267 136-173 (266)
7 d1m5wa_ c.1.24.1 (A:) Pyridoxi 10.2 29 0.0021 29.3 0.1 11 180-190 41-51 (242)
8 d1i9za_ d.151.1.2 (A:) Synapto 9.9 36 0.0026 28.4 0.6 41 194-239 130-180 (345)
9 d1lhta_ a.1.1.2 (A:) Myoglobin 9.3 1.3E+02 0.0091 21.8 3.6 51 236-287 29-80 (153)
10 d1a5za2 d.162.1.1 (A:164-333) 9.2 82 0.006 23.1 2.4 28 230-257 144-171 (172)
No 1
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=47.00 E-value=6.2 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.0
Q ss_pred cccccccc-cCCCCCCCCHHHHHHHHhcCcchHHHHH
Q psy7255 216 ALIGVVTS-HFSAPYDLHESRREQELRNVPKWRKYWK 251 (289)
Q Consensus 216 ~~~~~~~~-~~~~~~~L~~~rre~eL~~~pklrK~Wk 251 (289)
..+|+|++ .+.+| .++|-+.-|.|+++|..+++.+
T Consensus 50 v~lG~v~~Ld~~n~-~~~p~~~lq~fK~HP~I~~ll~ 85 (99)
T d2gmha2 50 LALGFVVGLDYQNP-YLSPFREFQRWKHHPSIKPTLE 85 (99)
T ss_dssp EEEEEEEETTCCCT-TCCHHHHHHHHTTSTTTHHHHT
T ss_pred EEEEEEechhHhCC-CCCHHHHHHHHhcCHHHHHHhc
Confidence 45677776 55666 5899888899999999999875
No 2
>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.12 E-value=7.1 Score=29.04 Aligned_cols=74 Identities=5% Similarity=0.083 Sum_probs=44.1
Q ss_pred HHhHhhhcccc-cccccccCCCCc-hHHHHHHHhhccccccc------ch-hhHHHHHHHHHhhhhccccc-cchHHHHh
Q psy7255 95 MTNEKFRERVN-AWETFRKHPEHF-PGLFHHVLETTLKSSAV------LM-SEQTALVVFLNHCFNSMNST-RVPSERKL 164 (289)
Q Consensus 95 MvNeKfRE~v~-aW~~F~~~pe~F-~~fF~rVL~l~l~~~~~------~~-~Eqt~ll~FLihcFqSle~~-~Vr~e~~~ 164 (289)
|++++-..-|- .|..+..+++.| ..||.|.++..=+...+ .. .-...+...|..+.++|++. .+...+..
T Consensus 1 ~Ls~~~i~~vk~tw~~l~~~~~~~~~~fy~rlF~~~P~~k~lF~~~~~~~~~h~~~~~~~l~~~v~~Ldd~~~l~~~l~~ 80 (146)
T d1gvha1 1 MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEK 80 (146)
T ss_dssp CCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGGGGHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHCHHHHHHhhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 44455555543 688887777766 55677777764322111 11 22355777788888898653 45566666
Q ss_pred hhhh
Q psy7255 165 LLKV 168 (289)
Q Consensus 165 Lvsl 168 (289)
|-..
T Consensus 81 Lg~~ 84 (146)
T d1gvha1 81 IAQK 84 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 3
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=14.96 E-value=23 Score=28.56 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.7
Q ss_pred chhHHHHhhhhhHhhhcCCCCCC
Q psy7255 59 IRRIMMLEFSQYLENYLWPNYKT 81 (289)
Q Consensus 59 ~rrim~LEfsQYLEnYLWPny~~ 81 (289)
.||-|.|-...+.. |||+||+
T Consensus 208 yrr~mTl~vLD~va--lfp~yD~ 228 (229)
T d1dlca3 208 YRREMTLTVLDLIA--LFPLYDV 228 (229)
T ss_dssp HHHHHHHHTHHHHT--TGGGGCT
T ss_pred HHHHHHHHHHHHHH--HCccCCC
Confidence 79999999999885 9999996
No 4
>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}
Probab=11.91 E-value=23 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=14.4
Q ss_pred ccccchhhhhhhcccccCCCcc
Q psy7255 191 GVSVHVDITAAGLQNLFGNGTF 212 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~ 212 (289)
|+-.|+-....|-...||+||-
T Consensus 84 a~YyCa~~~~~~~~~~FG~GT~ 105 (110)
T d1u3ha1 84 ATYFCAASANSGTYQRFGTGTK 105 (110)
T ss_dssp SEEEECCEESSSCCCCCCSCEE
T ss_pred eeEeeeecCCCCCCCEECCCeE
Confidence 5566775544455567999984
No 5
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.42 E-value=75 Score=22.28 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHhcCcchHHHHHHHhccC
Q psy7255 230 DLHESRREQELRNVPKWRKYWKLIMKKD 257 (289)
Q Consensus 230 ~L~~~rre~eL~~~pklrK~Wk~~~Kk~ 257 (289)
+|+++.++.-....-..+.-.+.-++.+
T Consensus 54 ~Ls~~eK~~Y~~~a~~~k~~Y~~~~~~y 81 (108)
T d1v64a_ 54 LLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877765555555555555444444
No 6
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=10.68 E-value=2.2e+02 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHhcCcchHHHHHHHhccCChHHHhHHHH
Q psy7255 230 DLHESRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEW 267 (289)
Q Consensus 230 ~L~~~rre~eL~~~pklrK~Wk~~~Kk~~~~~kekl~~ 267 (289)
+|-..-|...-...-.-..|=+.+..-+||..|+-|.+
T Consensus 136 nl~~DL~~NiaAE~~Ar~~Y~rl~~~tdDp~vk~~L~f 173 (266)
T d1jkva_ 136 NLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKF 173 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 44444454444444455667777777788888886655
No 7
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}
Probab=10.23 E-value=29 Score=29.27 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=9.0
Q ss_pred cccCCCCCCCc
Q psy7255 180 RTAHPRPDQTF 190 (289)
Q Consensus 180 ~~~~~~~~~~~ 190 (289)
=|.|||||+.-
T Consensus 41 ITvH~R~DrRH 51 (242)
T d1m5wa_ 41 ITVHLREDRRH 51 (242)
T ss_dssp EEEECCTTCSS
T ss_pred EEeCCCCCccc
Confidence 48999999863
No 8
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=9.95 E-value=36 Score=28.36 Aligned_cols=41 Identities=32% Similarity=0.534 Sum_probs=23.4
Q ss_pred cchhhhhhhcccccCCCccccccc----------cccccccCCCCCCCCHHHHHHH
Q psy7255 194 VHVDITAAGLQNLFGNGTFSMGAL----------IGVVTSHFSAPYDLHESRREQE 239 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~L~~~rre~e 239 (289)
|..+..+.|+..++|| |||. +-+|+.|+.|-..- ..+|.+.
T Consensus 130 v~~~~~~~g~~g~~gn----KGaV~vr~~i~~t~l~fvn~HL~ag~~~-~~~R~~~ 180 (345)
T d1i9za_ 130 VEGTVKKTGLGGVSGN----KGAVAIRFDYEDTGLCFITSHLAAGYTN-YDERDHD 180 (345)
T ss_dssp EEEEEEECCCC----C----CEEEEEEEEETTEEEEEEEEECCCCSSC-HHHHHHH
T ss_pred ceeEEEecCcCCcccC----CceEEEEEEECCEEEEEEEecccCcccc-hHHHHHH
Confidence 4445667787778887 6664 56699999886542 3444433
No 9
>d1lhta_ a.1.1.2 (A:) Myoglobin {Loggerhead sea turtle (Caretta caretta) [TaxId: 8467]}
Probab=9.34 E-value=1.3e+02 Score=21.76 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=27.3
Q ss_pred HHHHHhcCcchHHHHHHHhccCChHH-HhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7255 236 REQELRNVPKWRKYWKLIMKKDNPEE-KEKLEWERKYLHKIMLKFLNVVENIP 287 (289)
Q Consensus 236 re~eL~~~pklrK~Wk~~~Kk~~~~~-kekl~~Er~fL~~Lm~~Fl~vl~~ip 287 (289)
-...|+.+|..++++.......+.++ +....+ +.-..++|.-+-+.+++++
T Consensus 29 f~rlF~~~P~~~~~F~~~~~~~~~~~l~~~~~~-~~H~~~v~~~l~~~i~~ld 80 (153)
T d1lhta_ 29 IIRLFQLHPETQERFAKFKNLTTIDALKSSEEV-KKHGTTVLTALGRILKQKN 80 (153)
T ss_dssp HHHHHHHCGGGGGGCGGGTTCCSHHHHHHCHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHChHHHHHhhhccccCcHHHHhcCHHH-HHHHHHHHHHHHHhhhccc
Confidence 56678888888888877655543332 222222 2223444444444555544
No 10
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=9.23 E-value=82 Score=23.11 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHhcCcchHHHHHHHhccC
Q psy7255 230 DLHESRREQELRNVPKWRKYWKLIMKKD 257 (289)
Q Consensus 230 ~L~~~rre~eL~~~pklrK~Wk~~~Kk~ 257 (289)
.|++..++..-+..+.+++..+.+.|..
T Consensus 144 ~Ls~~E~~~l~~sa~~lk~~i~~l~~~~ 171 (172)
T d1a5za2 144 NLNEEELEAFRKSASILKNAINEITAEE 171 (172)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8999888776666788888888877654
Done!