RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7255
(289 letters)
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 49.4 bits (118), Expect = 5e-07
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 21/108 (19%)
Query: 147 NHCFNSMNSTRVPSERKLLLKVLGASRDPWILQRT-------AHPRPDQTFGVSVHVDIT 199
+ ++ + +E+ + L +++ LQ + + + +
Sbjct: 255 DFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRN 314
Query: 200 AAG--------------LQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 233
G L F G+ S+ ++ T+ FS L E
Sbjct: 315 PVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEE 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 4e-06
Identities = 43/249 (17%), Positives = 81/249 (32%), Gaps = 57/249 (22%)
Query: 31 HSEGSHLPYDANIVTQIYRTEIIGCNFAIRRIMMLEFSQYLENYLWPNYKTGEASHEHLM 90
H+ + L + + T + E+I R + F + + L+ G A L+
Sbjct: 102 HALAAKLLQENDT-TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLV 157
Query: 91 SIVIM-----TNEKFRERVNAWETFRKHPEHFPGLFHHVLETTLKSSAVLMSEQTALVVF 145
+ I T++ F E + ++T+ G TL L+
Sbjct: 158 A--IFGGQGNTDDYFEELRDLYQTYH----VLVGDLIKFSAETLSE---LIRTTLDAEKV 208
Query: 146 LNHCFNSM----NSTRVPSERKLL-----LKVLGASRDPWILQ--------RTAHPRPDQ 188
N + N + P + LL ++G ++Q + P +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG------VIQLAHYVVTAKLLGFTPGE 262
Query: 189 TF----GVSVHVD--ITAAGL------QNLFGNGTFSMGAL--IGVVTSHFSAP-YDLHE 233
G + H +TA + ++ F + ++ L IGV + + P L
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPP 321
Query: 234 SRREQELRN 242
S E L N
Sbjct: 322 SILEDSLEN 330
Score = 35.0 bits (80), Expect = 0.033
Identities = 41/249 (16%), Positives = 83/249 (33%), Gaps = 76/249 (30%)
Query: 85 SH---EHLMSIVIMTNEKFRERVNAWETFRKH-PEHFPGLFHHVLETTLKSSAVLMSEQT 140
SH EH +++ T F E F K PE G + + A L+ +
Sbjct: 12 SHGSLEH--VLLVPTASFFIASQ-LQEQFNKILPEPTEGF---AADDEPTTPAELVGK-- 63
Query: 141 ALVVFLNHCFNSMNSTRVPSERKLLLKVLGA-SRDPWILQRTAHPRPDQTFGVSVHVDIT 199
FL + + + ++V ++L L L+ G +H
Sbjct: 64 ----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENC--YLE-----------GNDIH---A 103
Query: 200 AAGLQNLFGNGTFSMGALIGVVTSHFSA------PYD------LHESRRE---------- 237
A L ++ ++ ++ +A P+D L + E
Sbjct: 104 LAA--KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 238 -Q--------ELRNVPKWRKYWKLIM-------KKDNPEEKEKLEWERKYLHKI-MLKFL 280
Q ELR++ ++ Y L+ + + + L+ E+ + + +L++L
Sbjct: 162 GQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 281 NVVENIPEE 289
N P++
Sbjct: 220 ENPSNTPDK 228
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 46.3 bits (110), Expect = 6e-06
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 21/108 (19%)
Query: 147 NHCFNSMNSTRVPSERKLLLKVLGASRDPWILQRT-------AHPRPDQTFGVSVHVDIT 199
N+ + +E+ +L L S+ L + + + +
Sbjct: 806 NYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARR 865
Query: 200 AAG--------------LQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 233
G L F G++ + +I T+HFS+ L E
Sbjct: 866 PKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQE 913
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 45.2 bits (107), Expect = 2e-05
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 21/108 (19%)
Query: 147 NHCFNSMNSTRVPSERKLLLKVLGASRDPWILQR-------TAHPRPDQTFGVSVHVDIT 199
+ ++ + +E+ + L +++ LQ + + + +
Sbjct: 738 DFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRN 797
Query: 200 AAG--------------LQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 233
G L F G+ S+ ++ T+ FS L E
Sbjct: 798 PVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEE 845
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.1 bits (93), Expect = 3e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 233 ESRREQELRNVPKWR-KYWKLIMKKDNPEEKEKLEWE---RKYLHK 274
R QE ++ KWR + K + + D + + EW +K L +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 4e-04
Identities = 40/245 (16%), Positives = 73/245 (29%), Gaps = 79/245 (32%)
Query: 67 FSQYLENYLWPNYKTGEASHE----HLMSIVIMTNEKFRERVNAWETFRKHPEHFPGLFH 122
+YL + + + E + + I+ E R+ + W+ ++ +
Sbjct: 307 LLKYL------DCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKH-------VNC 352
Query: 123 HVLETTLKSS-AVLMSEQT-----ALVVFLNHCFNSMNSTRVPSERKLLLKVLGASRDPW 176
L T ++SS VL + L VF S +P+ LL ++ W
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVF-------PPSAHIPTI---LLSLI------W 396
Query: 177 ILQRTAHPRPDQTFGVSVHVDITAAGLQNL------FGNGTFSMGALIGVVTSHFSAPYD 230
+ V + L T S+ ++ + Y
Sbjct: 397 ------------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 231 LHESRREQELRNVPKWRKYWKLI---------------MKKDNPEEKEKLEWERKYLHKI 275
LH S + N+PK LI +K E+ L + +L
Sbjct: 445 LHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLD-- 499
Query: 276 MLKFL 280
+FL
Sbjct: 500 -FRFL 503
Score = 39.1 bits (90), Expect = 0.001
Identities = 37/279 (13%), Positives = 82/279 (29%), Gaps = 62/279 (22%)
Query: 31 HSEGSHLPYDANIVTQIYRTEIIGCNFAIRRIMMLEFSQYLENYLWPNYKTGEASHEHLM 90
H H+ ++ Y+ +I+ F + + + +++ E H
Sbjct: 1 HHHHHHMDFETGEHQYQYK-DILS-VFEDAFVDNFDC-KDVQDMPKSILSKEEIDH---- 53
Query: 91 SIVIMTNEKFRERVNAWETFRKHPEHFPGLFHHVLETTLKSS-AVLMSE------QTALV 143
I++ + W T E F +E L+ + LMS Q +++
Sbjct: 54 -IIMSKDAVSGTLRLFW-TLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 144 VFL-----------NHCFNSMNSTRVPSERKLLLKVLGASRDPWILQRTAHPRPDQTFGV 192
+ N F N +R+ KL +L + G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLG--SGK 163
Query: 193 SVHVDITAA--GLQNLFGNGTF--SMG-------------ALIGVVTSHFSAPYDLHESR 235
+ +Q F ++ L+ + ++++ D +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 236 R------EQELRNVPKWRKYWK--LIMKKDNPEEKEKLE 266
+ + ELR + K + Y L++ N + +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAKAWN 260
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 37.7 bits (88), Expect = 0.003
Identities = 8/104 (7%), Positives = 19/104 (18%), Gaps = 21/104 (20%)
Query: 147 NHCFNSMNSTRVPSERKLLLKVLGASRDPWILQR------TAHPRPDQTFGVSVHVDITA 200
S +R ++ G + L + T
Sbjct: 637 KGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETL 696
Query: 201 AG--------------LQNLFGNGTFSMGALIGVVTSHFSAPYD 230
G + F G + + ++ +
Sbjct: 697 PGREFIFANLDRIIRLVIRYFT-GNRTASRTVEMMIPVIGLDHP 739
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.8 bits (71), Expect = 0.15
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 187 DQTFGVSVHVDITAAGLQNLFGNGTFSMGALIGVVTSHFSAPYD-----LHESRREQELR 241
D+ FG A G + G V + P D R QE
Sbjct: 41 DEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPE 100
Query: 242 NVPKWR-KYWKLIMKKDNPEEKEKLEWERK 270
++ KWR + K + + D + + EW K
Sbjct: 101 SIRKWREEQRKRLQELDAASKVMEQEWREK 130
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent
dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2;
1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A*
1gp4_A* 2brt_A*
Length = 356
Score = 29.9 bits (68), Expect = 0.94
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 161 ERKLLLKVLGASRDPWILQRTAH----PRPDQTFGVSVHVDITA---------AGLQ 204
E L K +G + + + + P+P+ GV H D++A GLQ
Sbjct: 194 EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 250
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 28.9 bits (65), Expect = 2.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 199 TAAGLQNLFGN--GTFSMGALIGVVTSHFS 226
TAAG LFG G+ + A++G F
Sbjct: 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG
oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida}
SCOP: b.82.2.1 PDB: 1wa6_X
Length = 319
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 161 ERKLLLKVLGASRDPWILQRTAH----PRPDQTFGVSVHVDITA----------AGLQ 204
E+ L S+ P + ++ P+PD G+ H D +GLQ
Sbjct: 139 EKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.9
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 4 KKQGSAPTVYQINKDRITEVAGKYWAPHSEGSHLPYDANI 43
+KQ + K + + K +A S + L A +
Sbjct: 18 EKQ-------ALKK---LQASLKLYADDSAPA-LAIKATM 46
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell
membrane, MEM protein transport, translocation,
transmembrane, transport; 3.30A {Thermus thermophilus}
PDB: 2rrn_A
Length = 741
Score = 28.2 bits (63), Expect = 4.1
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 15/77 (19%)
Query: 187 DQTFGVSVHVDIT---AAGLQNLFGNGT---FSMGALIGVVTSHFSA-------PYDLHE 233
+QT +V +T G F++ +G+ +S+
Sbjct: 666 NQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKN 725
Query: 234 SRREQELRNVPKWRKYW 250
R+ QE +
Sbjct: 726 RRKAQEASK--AHHHHH 740
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 25.5 bits (55), Expect = 5.6
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 235 RREQELRNVPKWR-KYWKLIMKKDNPEEKEKLEWERK 270
R + E ++ KWR + + + D K++ EW+ K
Sbjct: 3 RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEK 39
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha
sandwich; 2.50A {Anabaena SP}
Length = 253
Score = 26.7 bits (58), Expect = 7.6
Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 4/131 (3%)
Query: 162 RKLLLKVLGASRDPWILQRTAHPRPDQTFGVSVHVDITAAGLQNLFGNGTFSMGALIGVV 221
RK+ L++ IL PRP+ + D+ Q S L +
Sbjct: 76 RKMHLELAKVGNMLDILHCVMFPRPEYDLPM-FGCDLVGGRGQISAAIADLSPVHLDRTL 134
Query: 222 TSHFSAPYDLHESRREQELRNVPKWRKY---WKLIMKKDNPEEKEKLEWERKYLHKIMLK 278
+++ + + R +P+W + + ++ +PEE+ + ++ +
Sbjct: 135 PESYNSALTSLNTLNFSQPRELPEWGNIFSDFCIFVRPSSPEEEAMFLGRVREFLQVHCQ 194
Query: 279 FLNVVENIPEE 289
+ E
Sbjct: 195 GAIAASPVSAE 205
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF,
GTPase, VPS9, nucleotide, transport protein; HET: GNH;
2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Length = 267
Score = 27.0 bits (59), Expect = 8.3
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 69 QYLENYLWPNYKTGEASH---------EHLMSI----VIMTNEKFRERVNAWE 108
Y++ Y + GEA++ + +I + + +F + + +
Sbjct: 210 LYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKNMESAR 262
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS,
T4PB, inner membrane membrane, transmembrane, transport
protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB:
2vmb_A* 2vma_A*
Length = 123
Score = 26.0 bits (58), Expect = 9.0
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 108 ETFRKHPEHFPGLFHH---------VLETTLKSSAVLMSEQTAL 142
++ +P F LF L++ L+ A + +
Sbjct: 66 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKM 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,515,819
Number of extensions: 263061
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 22
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)