RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7255
         (289 letters)



>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)

Query: 245 KWRKYWKLIMKKDNPEEKEKLE--WE 268
            WR Y  L       EE+ +L    +
Sbjct: 65  NWRAYILLSQDYTGKEEQARLGRCLD 90


>d2gmha2 d.16.1.8 (A:237-335) Electron transfer
           flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 99

 Score = 24.4 bits (53), Expect = 7.3
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 2/63 (3%)

Query: 189 TFGVSVHVDITAAGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHESRREQELRNVPKWRK 248
           T G  +               G   +   +G V         L   R  Q  ++ P  + 
Sbjct: 25  TVGWPLDRHTYGGSFLYHLNEGEPLLA--LGFVVGLDYQNPYLSPFREFQRWKHHPSIKP 82

Query: 249 YWK 251
             +
Sbjct: 83  TLE 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,288
Number of extensions: 50417
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)