BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7256
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 340 TRVPSERKLLLKVKAFFKDMD---VGSGARSLEQSLETIELNIHWVRRNEEPIFQWLS 394
TR S L +++ F KD + GSG R+LEQ+LE + NI WV+ N+E + QW +
Sbjct: 842 TRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFT 899
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 33/125 (26%)
Query: 136 SHKYGNAETKDFWSVLSKH-SNHSI----NVKAIMDTWSRQMGFPVIRISRITPQHXXXX 190
+ Y N + W L + +N SI V+ IM+ W+ QMGFPVI + T
Sbjct: 442 TFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTG------ 495
Query: 191 XXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQ 250
+ +Q FLL +P DS + P S ++Y W VP++ D ++Q
Sbjct: 496 ------------TLSQEHFLL--DP----DSNVTRP-SEFNYVWIVPITSIRDG---RQQ 533
Query: 251 EIVWM 255
+ W+
Sbjct: 534 QDYWL 538
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXXX 196
HK+GNAE D W+ + S VK +M+ W + G+PVI++ R +
Sbjct: 381 HKFGNAEGSDLWTAIEDVSGKP--VKRVMEYWIKNPGYPVIKLKRNGRK----------- 427
Query: 197 XXMIEYSATQTRFLLTNEPYGR 218
+ QTRFLL E GR
Sbjct: 428 -----ITMYQTRFLLNGEEEGR 444
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXXX 196
HK+GNAE D W+ + S VK +M+ W + G+PVI++ R +
Sbjct: 381 HKFGNAEGSDLWTAIEDVSGKP--VKRVMEYWIKNPGYPVIKLKRNGRK----------- 427
Query: 197 XXMIEYSATQTRFLLTNEPYGR 218
+ QTRFLL E GR
Sbjct: 428 -----ITMYQTRFLLNGEEEGR 444
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 334 FIEFNSTRVPSERKL--LLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQ 391
I+ + R SE +L L + K D+ GSG R+LEQ+LE + NI WV+ N+E +
Sbjct: 880 LIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLN 939
Query: 392 WL 393
W
Sbjct: 940 WF 941
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 31/110 (28%)
Query: 136 SHKYGNAETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXX 189
+ Y N D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 483 AFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----- 537
Query: 190 XXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLS 239
+ +Q FLL +E N ++ S +DY W VP+S
Sbjct: 538 -------------NISQKHFLLDSE---SNVTR----SSAFDYLWIVPIS 567
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 334 FIEFNSTRVPSERKL--LLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQ 391
I+ + R SE +L L + K D+ GSG R+LEQ+LE + NI WV+ N+E +
Sbjct: 836 LIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLN 895
Query: 392 WL 393
W
Sbjct: 896 WF 897
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 31/110 (28%)
Query: 136 SHKYGNAETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXX 189
+ Y N D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 439 AFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----- 493
Query: 190 XXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLS 239
+ +Q FLL +E N ++ S +DY W VP+S
Sbjct: 494 -------------NISQKHFLLDSE---SNVTR----SSAFDYLWIVPIS 523
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 334 FIEFNSTRVPSERKL--LLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQ 391
I+ + R SE +L L + K D+ GSG R+LEQ+LE + NI WV+ N+E +
Sbjct: 837 LIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLN 896
Query: 392 WL 393
W
Sbjct: 897 WF 898
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 31/110 (28%)
Query: 136 SHKYGNAETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXX 189
+ Y N D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 440 AFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----- 494
Query: 190 XXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLS 239
+ +Q FLL +E N ++ S +DY W VP+S
Sbjct: 495 -------------NISQKHFLLDSE---SNVTR----SSAFDYLWIVPIS 524
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 334 FIEFNSTRVPSERKL--LLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQ 391
I+ + R SE +L L + K D+ GSG R+LEQ+LE + NI WV+ N+E +
Sbjct: 836 LIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLN 895
Query: 392 WL 393
W
Sbjct: 896 WF 897
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 31/110 (28%)
Query: 136 SHKYGNAETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXX 189
+ Y N D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 439 AFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----- 493
Query: 190 XXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLS 239
+ +Q FLL +E N ++ S +DY W VP+S
Sbjct: 494 -------------NISQKHFLLDSE---SNVTR----SSAFDYLWIVPIS 523
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 344 SERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSS 395
S R L +VK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 847 STRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 899
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 159 INVKAIMDTWSRQMGFPVIRIS 180
++VK +M+TW+ Q GFP+I I+
Sbjct: 479 VDVKTMMNTWTLQRGFPLITIT 500
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 344 SERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSS 395
S R L +VK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 889 STRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 941
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 158 SINVKAIMDTWSRQMGFPVIRIS 180
++VK +M+TW+ Q GFP+I I+
Sbjct: 520 GVDVKTMMNTWTLQKGFPLITIT 542
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 344 SERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSS 395
S R L +VK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 838 STRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 890
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 158 SINVKAIMDTWSRQMGFPVIRIS 180
++VK +M+TW+ Q GFP+I I+
Sbjct: 469 GVDVKTMMNTWTLQKGFPLITIT 491
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 338 NSTRVPSERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSS 395
+T S R L +VK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 349 GTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 407
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 326 NIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDV-GSGARSLEQSLETIELNIHWVRR 384
++ Y R I +T S + L +VK FF+ ++ GS + LETI NI W+ +
Sbjct: 888 DLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEK 947
Query: 385 NEEPIFQWL 393
N + WL
Sbjct: 948 NLPTLRTWL 956
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 92 VIPIATSGEVFPWNNVRLPT 111
P+AT+GE FPW +RLP+
Sbjct: 52 AFPVATNGERFPWQELRLPS 71
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 326 NIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDV-GSGARSLEQSLETIELNIHWVRR 384
++ Y R I +T S + L +VK FF+ ++ GS + LETI NI W+ +
Sbjct: 888 DLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEK 947
Query: 385 NEEPIFQWL 393
N + WL
Sbjct: 948 NLPTLRTWL 956
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 92 VIPIATSGEVFPWNNVRLPT 111
P+AT+GE FPW +RLP+
Sbjct: 52 AFPVATNGERFPWQELRLPS 71
>pdb|1OB8|A Chain A, Holliday Junction Resolving Enzyme
pdb|1OB8|B Chain B, Holliday Junction Resolving Enzyme
pdb|1OB9|A Chain A, Holliday Junction Resolving Enzyme
Length = 135
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 88 AKRPVIPIATSGEVFPWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDF 147
A+R ++ I GE F N VR+PTS P P +P I +T + + E K
Sbjct: 9 AERELVSIL-RGEGF--NAVRIPTSNSSPNP---------LPDIFATKGNTLLSIECKST 56
Query: 148 WSVLSKHSNHSINVKAIMDTWS--RQMGFPVIRI 179
W K H V+ ++D S G P+I I
Sbjct: 57 WENKVKVKEH--QVRKLLDFLSMFTMKGVPLIAI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,775,059
Number of Sequences: 62578
Number of extensions: 474875
Number of successful extensions: 1119
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 47
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)