Query psy7256
Match_columns 398
No_of_seqs 332 out of 1721
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:00:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 1.7E-40 3.8E-45 366.0 20.9 304 53-397 351-881 (882)
2 TIGR02412 pepN_strep_liv amino 99.9 3.2E-23 6.9E-28 228.7 20.3 125 51-184 312-454 (831)
3 COG0308 PepN Aminopeptidase N 99.7 2.3E-18 5.1E-23 190.6 10.2 157 51-245 332-507 (859)
4 PRK14015 pepN aminopeptidase N 99.6 7.4E-16 1.6E-20 170.3 11.2 158 51-242 321-494 (875)
5 TIGR02414 pepN_proteo aminopep 99.6 4E-16 8.7E-21 172.0 8.8 125 51-185 308-448 (863)
6 TIGR02411 leuko_A4_hydro leuko 99.3 1.1E-12 2.4E-17 140.4 3.0 128 51-182 304-453 (601)
7 PF11838 ERAP1_C: ERAP1-like C 98.8 4.1E-09 9E-14 103.6 5.7 116 257-376 171-324 (324)
8 KOG1047|consensus 95.9 0.0048 1E-07 64.8 2.5 120 51-178 313-458 (613)
9 KOG1806|consensus 95.9 0.0078 1.7E-07 67.0 4.1 92 252-359 148-242 (1320)
10 PF01433 Peptidase_M1: Peptida 95.1 0.0013 2.8E-08 66.5 -4.8 58 51-114 320-390 (390)
11 KOG1806|consensus 91.0 0.055 1.2E-06 60.6 -0.6 88 266-359 475-580 (1320)
12 PF15467 SGIII: Secretogranin- 58.6 6.1 0.00013 39.8 1.9 101 275-386 268-408 (453)
13 KOG1348|consensus 46.2 1.5E+02 0.0034 30.4 9.5 96 275-373 342-458 (477)
14 PF12075 KN_motif: KN motif; 41.4 17 0.00037 25.0 1.4 17 318-334 7-23 (39)
15 PF03715 Noc2: Noc2p family; 31.4 72 0.0016 31.7 4.6 45 351-395 229-283 (299)
16 TIGR01565 homeo_ZF_HD homeobox 30.3 50 0.0011 24.7 2.5 47 344-398 9-58 (58)
17 PF00046 Homeobox: Homeobox do 30.2 1.3E+02 0.0027 21.4 4.7 44 344-396 8-51 (57)
18 KOG0810|consensus 29.0 19 0.00042 35.7 0.2 34 35-68 259-292 (297)
19 KOG4686|consensus 26.6 23 0.00049 35.7 0.1 71 1-76 1-73 (459)
20 TIGR01446 DnaD_dom DnaD and ph 22.9 1.2E+02 0.0026 22.9 3.6 48 346-396 15-64 (73)
No 1
>KOG1046|consensus
Probab=100.00 E-value=1.7e-40 Score=366.02 Aligned_cols=304 Identities=26% Similarity=0.466 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHhcCCcCCCCCCCcceec---------cccCCCCCCcCC----CCCCcCCCCCCCCCCcccccC-----
Q psy7256 53 ILFLSSLIIAYVGPQNDCPCIGEKPVFLQ---------DEDLNGAKRPVI----PIATSGEVFPWNNVRLPTSTG----- 114 (398)
Q Consensus 53 ~~~gfAt~~ey~~~~~~~P~w~~~~~Fv~---------D~~~ss~t~pv~----~~~~i~~~Fdw~~~~IsY~KG----- 114 (398)
+-=|||+||+|++++.++|+|.++++|+. |+..++ |||. .+.+|.++|| .|+|.||
T Consensus 351 LnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~s--hpi~~~v~~~~ei~e~fd----~i~Y~KGasvlR 424 (882)
T KOG1046|consen 351 LNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASS--HPISVPVESPSEIDEIFD----EISYQKGASVLR 424 (882)
T ss_pred hcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhccccc--CCeeeecCCcchhhhhhh----hhhhhHHHHHHH
Confidence 33399999999999999999999998765 888886 8874 5777888999 9999999
Q ss_pred CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHHHHHHHccCCccEEEEEecCCCCCCCCCCCC
Q psy7256 115 MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTP 194 (398)
Q Consensus 115 Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~m~sW~~q~GyPvv~v~~~~~~~~~~~~~~~ 194 (398)
||+.+. |...|++|++.||++|+|+||+++|||++|+ .+.+.+|+++|++||.|+|||||+|.++++
T Consensus 425 ML~~~l-Ge~~F~~gi~~yL~~~~y~na~~~DLw~~l~--~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~---------- 491 (882)
T KOG1046|consen 425 MLESLL-GEEVFRKGLRSYLKKHQYSNAKTEDLWDALE--EGSGLDVSELMDTWTKQMGYPVVTVERNGD---------- 491 (882)
T ss_pred HHHHHH-CHHHHHHHHHHHHHHhccCCCCchhHHHHHh--ccCCCCHHHHHhhhhcCCCCceEEEEecCC----------
Confidence 886666 5566777777999999999999999999999 344569999999999999999999999887
Q ss_pred CCCCCeeEEEEEeeeccCCCCCCCCCCCCCCCCCCCCCeeEEeEEEEECCCCcc-----c---------eeeeeeecccc
Q psy7256 195 APPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYK-----E---------QEIVWMNMTDG 260 (398)
Q Consensus 195 ~~~~~~~i~l~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~t~~~~~~-----~---------~~~~WLnl~s~ 260 (398)
.++++|+||+..... ++..++|+|||+|.+.+.+.+ + .+..|+..+..
T Consensus 492 ------~~~l~Q~rf~~~~~~------------~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~wi~~N~~ 553 (882)
T KOG1046|consen 492 ------SLTLTQERFLSDPDP------------SEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPESDQWIKVNLE 553 (882)
T ss_pred ------EEEEehhhhccCCCc------------cccCcccceeEEEEcCCCCccceeeecCCCcceecCCCCeEEEEeCC
Confidence 789999999987542 125799999999998866421 0 01124333211
Q ss_pred --------------------------------------------------------------------------------
Q psy7256 261 -------------------------------------------------------------------------------- 260 (398)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (398)
T Consensus 554 ~~g~yRV~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~ 633 (882)
T KOG1046|consen 554 QTGYYRVNYDDENWALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLH 633 (882)
T ss_pred cceEEEEEeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy7256 261 -------------------------------------------------------------------------------- 260 (398)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (398)
T Consensus 634 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~ 713 (882)
T KOG1046|consen 634 SLEDTEIYSKFKEFVKKLILPIFEKLGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLRE 713 (882)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhh
Confidence
Q ss_pred -ccchhhhhhhhcCchhHHHHHHHHHccCCHHHHHHHHHH------HHHHHHHHH-----------HHHHhh---ccCCC
Q psy7256 261 -EFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWE------RKYLHKIML-----------KFLNVV---ENIPE 319 (398)
Q Consensus 261 -Vy~~g~r~~~L~~~~~W~klw~~y~kt~~~~EK~kll~~------~~~L~~ll~-----------D~~~vi---~~i~~ 319 (398)
|||.+++++ +++.|+++|++|+++..++||.+++.+ .+.|.++++ |.+.++ ..++.
T Consensus 714 ~vy~~~~~~g---~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~ 790 (882)
T KOG1046|consen 714 VVYCTAVQFG---TEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPR 790 (882)
T ss_pred hhhhHHHHhc---CHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcc
Confidence 788777766 788999999999999999999999997 555666663 555555 45558
Q ss_pred CCCCchhHHH-----HHHHH-----HHhhhcCCc---chHHHHHHHHHhhhcc-cCCchhhHHHHHHHHHHHHHHHHHhC
Q psy7256 320 EGDIPSNIVR-----YCERF-----IEFNSTRVP---SERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRN 385 (398)
Q Consensus 320 G~~lawdfv~-----~~eRf-----l~~lI~~vt---t~~~~l~~~~~Ff~~~-~~g~~~~~~~qalEti~~NI~Wl~~n 385 (398)
|..+||+|++ +.+|| ++++|..++ ++...+.+++.||... ..+. .++++||+|+++.||+|++++
T Consensus 791 g~~~a~~~~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~le~~~~ni~W~~~~ 869 (882)
T KOG1046|consen 791 GVELAWKFLQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGA-ERALQQALETVKANIQWVERN 869 (882)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHhhhhHHHhh
Confidence 9999999998 56664 777877777 3349999999999988 4454 899999999999999999999
Q ss_pred hHHHHHHHhhhc
Q psy7256 386 EEPIFQWLSSYL 397 (398)
Q Consensus 386 ~~~i~~Wl~~~~ 397 (398)
.+.+.+||....
T Consensus 870 ~~~l~~~l~~~~ 881 (882)
T KOG1046|consen 870 EENLTQWLLEAL 881 (882)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.91 E-value=3.2e-23 Score=228.70 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCCCcceec---------cccCCCCCCcCC----CCCCcCCCCCCCCCCcccccC---
Q psy7256 51 LSILFLSSLIIAYVGPQNDCPCIGEKPVFLQ---------DEDLNGAKRPVI----PIATSGEVFPWNNVRLPTSTG--- 114 (398)
Q Consensus 51 ~~~~~gfAt~~ey~~~~~~~P~w~~~~~Fv~---------D~~~ss~t~pv~----~~~~i~~~Fdw~~~~IsY~KG--- 114 (398)
+++-=|||+||++++++.+.|+|+.+.+|.. |+..+ +|||. .+.++...|| .|+|.||
T Consensus 312 lWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~--t~Pi~~~~~~~~~~~~~fd----~isY~KGa~v 385 (831)
T TIGR02412 312 LWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPT--THPIVADVADLADALSNFD----GITYAKGASV 385 (831)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccC--CCCCccCCCCHHHHHHhcc----CccchhHHHH
Confidence 3444499999999999999999999888764 66555 48885 3456678899 9999999
Q ss_pred --CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHHHHHHHccCCccEEEEEecCC
Q psy7256 115 --MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITP 184 (398)
Q Consensus 115 --Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~m~sW~~q~GyPvv~v~~~~~ 184 (398)
||+.++ |...|+++|+.|+++|+|+|++++|||++|++++|. ++..+|++|++|+|||+|+|++.++
T Consensus 386 L~mL~~~l-Gee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~--dl~~~~~~W~~~~G~P~l~v~~~~~ 454 (831)
T TIGR02412 386 LKQLVAWV-GEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGR--DLSAWSDAWLETAGVNTLTPEITTD 454 (831)
T ss_pred HHHHHHHH-CHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHcCCCCceEEEEEEEC
Confidence 776555 556777777799999999999999999999999986 7999999999999999999998765
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.75 E-value=2.3e-18 Score=190.56 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCC-CCCCCcceec---------cccCCCCCCcCC----CCCCcCCCCCCCCCCcccccC--
Q psy7256 51 LSILFLSSLIIAYVGPQNDCP-CIGEKPVFLQ---------DEDLNGAKRPVI----PIATSGEVFPWNNVRLPTSTG-- 114 (398)
Q Consensus 51 ~~~~~gfAt~~ey~~~~~~~P-~w~~~~~Fv~---------D~~~ss~t~pv~----~~~~i~~~Fdw~~~~IsY~KG-- 114 (398)
+++-=|||+|+++...+.+.| +|..+..|.. |+..++ |||. .|.++.++|| .|+|.||
T Consensus 332 lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--hPi~~~~~~~~ei~~~fD----~i~Y~KGs~ 405 (859)
T COG0308 332 LWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSS--HPIRVDVYDPKEINDFFD----AIVYEKGAS 405 (859)
T ss_pred HHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhcccccc--CCcccCCCCccchhhhcc----hhhcchhHH
Confidence 666779999999999999999 8888887665 777775 9996 3689999999 9999999
Q ss_pred ---CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHHHHHHHccCCccEEEEEecCCCCCCCCC
Q psy7256 115 ---MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSS 191 (398)
Q Consensus 115 ---Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~m~sW~~q~GyPvv~v~~~~~~~~~~~~ 191 (398)
||+... |...|++++..|+++|+|+|++++|||+++.+++|. ++..+|++|++|+|||+|+|+..++.
T Consensus 406 vlrml~~~l-G~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~--dl~~~~~~w~~q~G~P~l~v~~~~~~------ 476 (859)
T COG0308 406 VLRMLETLL-GEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGK--DLSAFFESWLSQAGYPVLTVSVRYDD------ 476 (859)
T ss_pred HHHHHHHHH-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCC--cHHHHHHHHHhCCCCCceeeeeeccc------
Confidence 885444 244555555599999999999999999999999997 79999999999999999999998872
Q ss_pred CCCCCCCCeeEEEEEeeeccCCCCCCCCCCCCCCCCCCCCCeeEEeEEEEECCC
Q psy7256 192 TTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQT 245 (398)
Q Consensus 192 ~~~~~~~~~~i~l~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~t~~~ 245 (398)
.++++|.||...+.. ....|.||+.+.....
T Consensus 477 ---------~~~l~~~q~~~~~~~--------------~~~~~~iPl~~~~~~~ 507 (859)
T COG0308 477 ---------FFKLTQKQFTPPGQE--------------EKRPWPIPLAIKLLDG 507 (859)
T ss_pred ---------cEEEEEEEeccCCCc--------------cCceeeeccEEEecCC
Confidence 577999999875511 2568999999988744
No 4
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.63 E-value=7.4e-16 Score=170.29 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHH-hcCCcCCCCC-CCc-------ceeccccCCCCCCcCCC--CCCcCCCCCCCCCCcccccC-----
Q psy7256 51 LSILFLSSLIIAYV-GPQNDCPCIG-EKP-------VFLQDEDLNGAKRPVIP--IATSGEVFPWNNVRLPTSTG----- 114 (398)
Q Consensus 51 ~~~~~gfAt~~ey~-~~~~~~P~w~-~~~-------~Fv~D~~~ss~t~pv~~--~~~i~~~Fdw~~~~IsY~KG----- 114 (398)
+++-=|||+|++.. ..+...+.+. +.+ +|..|+... +|||.+ ..++.+.|+ .++|.||
T Consensus 321 LWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~--a~pi~p~~~~~i~~~f~----~~~Y~KGA~vLr 394 (875)
T PRK14015 321 LSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPM--AHPVRPDSYIEINNFYT----ATVYEKGAEVIR 394 (875)
T ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccccccccc--CCCCCCcchhhHHhccc----chhhhHHHHHHH
Confidence 33444999999644 4443334332 112 233365554 489864 346788999 9999999
Q ss_pred CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHHHHHHHccCCccEEEEEecCCCCCCCCCCCC
Q psy7256 115 MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTP 194 (398)
Q Consensus 115 Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~m~sW~~q~GyPvv~v~~~~~~~~~~~~~~~ 194 (398)
||+..+ |-..|+++|+.|+++|+|++++++|||.++++++|. ++..++ +|+.|+|+|+|+|+++++..
T Consensus 395 MLr~~l-Gde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~--DL~~f~-~W~~q~G~P~l~v~~~~d~~-------- 462 (875)
T PRK14015 395 MLHTLL-GEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGR--DLSQFR-RWYSQAGTPRVTVSDEYDAA-------- 462 (875)
T ss_pred HHHHHh-CHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCC--CHHHHH-HHHcCCCCCeEEEEEEEcCC--------
Confidence 775544 555666677799999999999999999999999986 788876 89999999999999987521
Q ss_pred CCCCCeeEEEEEeeeccCCCCCCCCCCCCCCCCCCCCCeeEEeEEEEE
Q psy7256 195 APPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYT 242 (398)
Q Consensus 195 ~~~~~~~i~l~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~t 242 (398)
...-.++++|.. ..... .+....|.|||.+..
T Consensus 463 --~~~~~ltl~Q~~--~~~~~------------~~~~~~~~iPl~i~l 494 (875)
T PRK14015 463 --AGTYTLTLSQST--PPTPG------------QPEKQPLHIPVAIGL 494 (875)
T ss_pred --CCEEEEEEEEeC--CCCCC------------CCCCceEEEEEEEEE
Confidence 011245555553 22111 113567999999964
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.63 E-value=4e-16 Score=172.03 Aligned_cols=125 Identities=17% Similarity=0.159 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhcCCcCC--CCCCC-------cceeccccCCCCCCcCCC--CCCcCCCCCCCCCCcccccC-----
Q psy7256 51 LSILFLSSLIIAYVGPQNDCP--CIGEK-------PVFLQDEDLNGAKRPVIP--IATSGEVFPWNNVRLPTSTG----- 114 (398)
Q Consensus 51 ~~~~~gfAt~~ey~~~~~~~P--~w~~~-------~~Fv~D~~~ss~t~pv~~--~~~i~~~Fdw~~~~IsY~KG----- 114 (398)
+++-=|||+|+++........ .+++. .+|..|+... +|||.+ ..++.+.|+ .++|.||
T Consensus 308 LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~--~~Pi~~~~~~~i~~~y~----~i~Y~KGA~vLr 381 (863)
T TIGR02414 308 LSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPM--AHPVRPESYVEINNFYT----ATVYEKGAEVIR 381 (863)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccccccc--CCCCCCcchhhHHhccc----hHHhHHHHHHHH
Confidence 344449999999643332221 11111 1343466555 489864 457788999 9999999
Q ss_pred CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHHHHHHHccCCccEEEEEecCCC
Q psy7256 115 MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQ 185 (398)
Q Consensus 115 Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~m~sW~~q~GyPvv~v~~~~~~ 185 (398)
||+..+ |-..|+++++.|+++|+|++++++|||.+|++++|. ++..++ +|+.|+|||+|+|+++++.
T Consensus 382 ML~~~L-Gee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~--dL~~f~-~W~~q~G~P~v~v~~~yd~ 448 (863)
T TIGR02414 382 MLHTLL-GEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGR--DLNQFR-RWYSQAGTPVLEVKENYDA 448 (863)
T ss_pred HHHHHh-CHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCC--CHHHHH-HHHcCCCCceeEEEEEEcC
Confidence 775555 455677777799999999999999999999999986 788874 8999999999999998763
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.29 E-value=1.1e-12 Score=140.44 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCCC-cceec-----c---ccCCCC--CCcCCCC--CCcCCCCCCCCCCcccccC---
Q psy7256 51 LSILFLSSLIIAYVGPQNDCPCIGEK-PVFLQ-----D---EDLNGA--KRPVIPI--ATSGEVFPWNNVRLPTSTG--- 114 (398)
Q Consensus 51 ~~~~~gfAt~~ey~~~~~~~P~w~~~-~~Fv~-----D---~~~ss~--t~pv~~~--~~i~~~Fdw~~~~IsY~KG--- 114 (398)
+++-=|||+|+|+++++.++|++... ..++. + ...+.+ +.++.++ .++.+.|+ .|+|.||
T Consensus 304 ~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dp~~~f~----~i~Y~KGa~~ 379 (601)
T TIGR02411 304 FWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVKTLGEDPEYTKLVVDLKDNDPDDAFS----SVPYEKGFNF 379 (601)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHhhcCCCCCCcccccCCCCChhhhcc----ccchhhHHHH
Confidence 55556999999999999999987531 11111 1 112210 2233222 26788999 9999999
Q ss_pred --CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCC---CccHHHH-HHHHHccCCccEEEEEec
Q psy7256 115 --MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNH---SINVKAI-MDTWSRQMGFPVIRISRI 182 (398)
Q Consensus 115 --Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~---~~~v~~~-m~sW~~q~GyPvv~v~~~ 182 (398)
||+...+|...|+.+|+.|+++|+|++++++|||++|.++... ..++..+ |+.|++|+|+|++++.-+
T Consensus 380 L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 380 LFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 7788885488999999999999999999999999999887521 1245556 999999999999886543
No 7
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=98.82 E-value=4.1e-09 Score=103.55 Aligned_cols=116 Identities=23% Similarity=0.371 Sum_probs=89.6
Q ss_pred ccccccchhhhhhhhcCchhHHHHHHHHHccCCHHHHHHHHHH----------HHHHHHHHH-------HHHHhh---c-
Q psy7256 257 MTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWE----------RKYLHKIML-------KFLNVV---E- 315 (398)
Q Consensus 257 l~s~Vy~~g~r~~~L~~~~~W~klw~~y~kt~~~~EK~kll~~----------~~~L~~ll~-------D~~~vi---~- 315 (398)
++..+||.+++.+ +.++|+++|+.|+++.+++||..++.+ +++|..+++ |...++ .
T Consensus 171 lr~~v~~~~~~~g---~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~ 247 (324)
T PF11838_consen 171 LRWAVYCAGVRNG---DEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLAS 247 (324)
T ss_dssp HHHHHHHHHTTS-----HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh---hHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhc
Confidence 4667999998876 778899999999999999999999997 556666665 333344 3
Q ss_pred cCCCCCCCchhHHH-----HHHHH------HHhhhcCCc----chHHHHHHHHHhhhcc--cCCchhhHHHHHHHHHH
Q psy7256 316 NIPEEGDIPSNIVR-----YCERF------IEFNSTRVP----SERKLLLKVKAFFKDM--DVGSGARSLEQSLETIE 376 (398)
Q Consensus 316 ~i~~G~~lawdfv~-----~~eRf------l~~lI~~vt----t~~~~l~~~~~Ff~~~--~~g~~~~~~~qalEti~ 376 (398)
..+.|++++|+|++ +.++| +..++..++ |+ +++.++++||+.+ ..+...++++|++|+||
T Consensus 248 ~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~f~~~~~~~~~~~~r~l~q~~e~Ir 324 (324)
T PF11838_consen 248 SNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTE-EQLDELEEFFEDKPKPPPGLRRALAQSLETIR 324 (324)
T ss_dssp CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SH-HHHHHHHHHHHHHCTCCCTTTHHCHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCH-HHHHHHHHHHhhCcCCChHHHHHHHHHHHhcC
Confidence 66689999999998 45555 456666555 55 9999999999654 44667899999999986
No 8
>KOG1047|consensus
Probab=95.88 E-value=0.0048 Score=64.77 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCCCcceec-----------cccCCCCCCcC----C--CCCCcCCCCCCCCCCccccc
Q psy7256 51 LSILFLSSLIIAYVGPQNDCPCIGEKPVFLQ-----------DEDLNGAKRPV----I--PIATSGEVFPWNNVRLPTST 113 (398)
Q Consensus 51 ~~~~~gfAt~~ey~~~~~~~P~w~~~~~Fv~-----------D~~~ss~t~pv----~--~~~~i~~~Fdw~~~~IsY~K 113 (398)
|++==||++|.|-.+...++-+ ...+|-. |.... +||. + .+.+++.+|. .++|.|
T Consensus 313 fWLNEGfTvylErrI~g~~~g~--~~~~f~a~~gw~~L~~~~d~~g~--~~~~tkLv~kl~~~dPDdafs----~VpYeK 384 (613)
T KOG1047|consen 313 FWLNEGFTVYLERRIVGRLYGE--AYRQFEALIGWRELRPSMDLFGE--TSEFTKLVVKLENVDPDDAFS----QVPYEK 384 (613)
T ss_pred hhhcccchhhhhhhhhhhhcch--hHHHHHHhcChhhhhhHHHhcCC--CcccchhhhhccCCChHHhhh----cCchhh
Confidence 4444499999988776665321 0112211 22222 3443 2 2467788999 999999
Q ss_pred C-----CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCC--Ccc--HHHHHHHHHccCCccEEE
Q psy7256 114 G-----MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNH--SIN--VKAIMDTWSRQMGFPVIR 178 (398)
Q Consensus 114 G-----Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~--~~~--v~~~m~sW~~q~GyPvv~ 178 (398)
| -|+.-.+|-..|...|+.|+++|+|++..++|+-+.|-+..+. ..+ ..-..+.|.+.+|.|-+.
T Consensus 385 G~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~ 458 (613)
T KOG1047|consen 385 GFALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPK 458 (613)
T ss_pred hhHHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCC
Confidence 9 3377888888999999999999999999999999999777542 122 234789999999999754
No 9
>KOG1806|consensus
Probab=95.86 E-value=0.0078 Score=67.01 Aligned_cols=92 Identities=28% Similarity=0.443 Sum_probs=71.8
Q ss_pred eeeeeccccccchhhhhhhhcCchhHHHHHHHHHccC-CHHHHHHHH--HHHHHHHHHHHHHHHhhccCCCCCCCchhHH
Q psy7256 252 IVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKD-NPEEKEKLE--WERKYLHKIMLKFLNVVENIPEEGDIPSNIV 328 (398)
Q Consensus 252 ~~WLnl~s~Vy~~g~r~~~L~~~~~W~klw~~y~kt~-~~~EK~kll--~~~~~L~~ll~D~~~vi~~i~~G~~lawdfv 328 (398)
.+|+.+. ++.-.-+|++.++..|.|+.|+|+. +--||-.+- -+++|+..+|..|..|+..- | -+-|
T Consensus 148 ~~~~sl~-----~~r~~~~l~~~~~l~k~~~~~k~~~~s~~~k~~~~~~~~~~~~s~li~~~~~~~~~~--~----~~kv 216 (1320)
T KOG1806|consen 148 SIWNSLD-----LDRVKYELHDSPSLTKAWDSYKKKRPSIVEKFPLHNLLERWFHSLLIKSFSYVLTEK--Q----EAKV 216 (1320)
T ss_pred hhhhccc-----hHhHHhhhccChHHHHHHHHhhhhcccccccccccccHHHHHHHHHHHHHHHHHccc--c----cccc
Confidence 4777665 2444457889999999999999875 345554432 25899999999999999651 2 3567
Q ss_pred HHHHHHHHhhhcCCcchHHHHHHHHHhhhcc
Q psy7256 329 RYCERFIEFNSTRVPSERKLLLKVKAFFKDM 359 (398)
Q Consensus 329 ~~~eRfl~~lI~~vtt~~~~l~~~~~Ff~~~ 359 (398)
.||||||+.+|+ +..+.|+|+|+...
T Consensus 217 ~~~~~~i~~~i~-----l~~~~ptrr~~~p~ 242 (1320)
T KOG1806|consen 217 TYCERFIEMSID-----LLSALPTRRFAHPV 242 (1320)
T ss_pred hHHHHHHHHHHH-----HHHhccchhhhhhh
Confidence 799999999999 99999999999865
No 10
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=95.10 E-value=0.0013 Score=66.49 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCCCcceec---------cccCCCCCCcCC----CCCCcCCCCCCCCCCcccccC
Q psy7256 51 LSILFLSSLIIAYVGPQNDCPCIGEKPVFLQ---------DEDLNGAKRPVI----PIATSGEVFPWNNVRLPTSTG 114 (398)
Q Consensus 51 ~~~~~gfAt~~ey~~~~~~~P~w~~~~~Fv~---------D~~~ss~t~pv~----~~~~i~~~Fdw~~~~IsY~KG 114 (398)
+++-=|||+|+++.+.+.++|+|++++.|.. |+..++ |||. .+.++..+|| .++|+||
T Consensus 320 ~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~pl~~~~~~~~~~~~~f~----~~~Y~KG 390 (390)
T PF01433_consen 320 LWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNS--HPLSSEVEDPSDIDDMFD----DISYNKG 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTC--CCSSSSSSSESCGGGGSS----HHHHHHH
T ss_pred hhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCC--cceEeCCCCCCChHHhcC----ccccCCC
Confidence 5666699999999999999999999887766 666654 8875 5688889999 9999998
No 11
>KOG1806|consensus
Probab=91.03 E-value=0.055 Score=60.61 Aligned_cols=88 Identities=25% Similarity=0.352 Sum_probs=64.5
Q ss_pred hhhhhhcCchhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH-----hhccCC-------------CCCCCchhH
Q psy7256 266 RREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLN-----VVENIP-------------EEGDIPSNI 327 (398)
Q Consensus 266 ~r~~~L~~~~~W~klw~~y~kt~~~~EK~kll~~~~~L~~ll~D~~~-----vi~~i~-------------~G~~lawdf 327 (398)
+++..+...++|++-|++-++.. ++-+-.+.+.+.++..++.++.. ++...| .-+.+..+.
T Consensus 475 r~~f~v~eV~~p~ige~~p~kv~-ad~~~~~~~eRh~~~nli~~f~k~~~~~Li~i~P~e~~~~~~~~~~~~eg~vp~~~ 553 (1320)
T KOG1806|consen 475 RNDFKVTEVAPPNIGENLPQKVT-ADVTLSRPGERHSILNLIENFKKHDVLFLIYIRPMEPKGLEGNALDPLEGRVPLTY 553 (1320)
T ss_pred hhhheeeecCCcchhhhhhhhhh-hhccccCcchHHHHHHHHHHhhhcCeeEEEEeccCcccCcccccccccccccCccc
Confidence 44455566788888888766654 22222344568888889988887 555555 223466788
Q ss_pred HHHHHHHHHhhhcCCcchHHHHHHHHHhhhcc
Q psy7256 328 VRYCERFIEFNSTRVPSERKLLLKVKAFFKDM 359 (398)
Q Consensus 328 v~~~eRfl~~lI~~vtt~~~~l~~~~~Ff~~~ 359 (398)
+++||||+.++|+ ++.+.++++||++.
T Consensus 554 v~yCErf~~f~id-----lesildtrRffnvv 580 (1320)
T KOG1806|consen 554 VRYCERFGMFDID-----LESILDTRRFFNVV 580 (1320)
T ss_pred chhhhhhhhhhhh-----hhhccCCcceEEEe
Confidence 9999999999999 99999999999976
No 12
>PF15467 SGIII: Secretogranin-3
Probab=58.60 E-value=6.1 Score=39.80 Aligned_cols=101 Identities=25% Similarity=0.436 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCC--CCCCCchhHHHHHHHH-----------HHhh
Q psy7256 275 PKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVV---ENIP--EEGDIPSNIVRYCERF-----------IEFN 338 (398)
Q Consensus 275 ~~W~klw~~y~kt~~~~EK~kll~~~~~L~~ll~D~~~vi---~~i~--~G~~lawdfv~~~eRf-----------l~~l 338 (398)
+.+..|.+.+....++.||..|+. +-+.|-||+..+ +.|+ .|.. |+|-. |+.-
T Consensus 268 PNFy~LLkSldSE~dakEkeTLIT----IMKTLIDFVKMMVKYGTItPEEGVs-------YLENLD~mIAlQtknKL~K~ 336 (453)
T PF15467_consen 268 PNFYALLKSLDSEKDAKEKETLIT----IMKTLIDFVKMMVKYGTITPEEGVS-------YLENLDAMIALQTKNKLGKN 336 (453)
T ss_pred hhHHHHHHhhcchhhhhhhHHHHH----HHHHHHHHHHHHHHhcCcChhhhhH-------HHHhHHHHHHHHHhhhhccC
Confidence 556667777777778888888763 223334666655 3443 3322 21111 1111
Q ss_pred hc----CCc---------chHHHHHHHHHhhhcc-cC------Cc----hhhHHHHHHHHHHHHHHHHHhCh
Q psy7256 339 ST----RVP---------SERKLLLKVKAFFKDM-DV------GS----GARSLEQSLETIELNIHWVRRNE 386 (398)
Q Consensus 339 I~----~vt---------t~~~~l~~~~~Ff~~~-~~------g~----~~~~~~qalEti~~NI~Wl~~n~ 386 (398)
.. ... ++.++..+|+.=+... ++ .+ ...-.+-=||.||.||+||+++-
T Consensus 337 ~~~~~~~~p~~k~~ee~DsTK~EAakMekeye~lKDSTK~e~~~~~~~~~pgKsEaYLEAIRKNIEWLKkHn 408 (453)
T PF15467_consen 337 LTSKLFPAPSEKSHEETDSTKEEAAKMEKEYENLKDSTKDEQQNAAGTDEPGKSEAYLEAIRKNIEWLKKHN 408 (453)
T ss_pred ccCccCCCCccccccccccHHHHHHHHHHHhhhhccccccccCCCcCCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 10 000 3347777777766543 11 00 01223556999999999999864
No 13
>KOG1348|consensus
Probab=46.15 E-value=1.5e+02 Score=30.42 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHccCCHH-HHHHHHH----H---HHHHHHHHHHHHHhh---------ccC-CCCCCCc--hhHHH-HHHH
Q psy7256 275 PKWRKYWKLIMKKDNPE-EKEKLEW----E---RKYLHKIMLKFLNVV---------ENI-PEEGDIP--SNIVR-YCER 333 (398)
Q Consensus 275 ~~W~klw~~y~kt~~~~-EK~kll~----~---~~~L~~ll~D~~~vi---------~~i-~~G~~la--wdfv~-~~eR 333 (398)
.+..++|++|+|+.+-+ |+..+.. . |.-+++.+.+..+++ +.+ +.|++|. |+.++ .+--
T Consensus 342 ~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~~~~~~l~~vr~~g~Plvddw~C~k~~v~~ 421 (477)
T KOG1348|consen 342 APLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGSEGEAVLNQVRSEGQPLVDDWDCLKSAVRH 421 (477)
T ss_pred ccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHhhcCCCCccchHHHHHHHHHH
Confidence 46889999999998655 4444332 2 666777666555543 222 2687765 78777 3333
Q ss_pred HHHhhhcCCcchHHHHHHHHHhhhcccCCchhhHHHHHHH
Q psy7256 334 FIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLE 373 (398)
Q Consensus 334 fl~~lI~~vtt~~~~l~~~~~Ff~~~~~g~~~~~~~qalE 373 (398)
|=..-+. ++ +..+.-|+.|-+--..|-...-++.|++
T Consensus 422 F~~hCg~--~~-~YglKh~~~~aN~Cn~g~~~e~~~~A~~ 458 (477)
T KOG1348|consen 422 FETHCGS--TY-EYGLKHMRVLANMCNKGVPLEQIELAMD 458 (477)
T ss_pred HHHhcch--HH-HHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 3222222 12 3777778877663344433333333333
No 14
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=41.38 E-value=17 Score=24.97 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.1
Q ss_pred CCCCCCchhHHHHHHHH
Q psy7256 318 PEEGDIPSNIVRYCERF 334 (398)
Q Consensus 318 ~~G~~lawdfv~~~eRf 334 (398)
|.|..|..||++|||-+
T Consensus 7 PYGyhiDLDFvkyve~i 23 (39)
T PF12075_consen 7 PYGYHIDLDFVKYVEDI 23 (39)
T ss_pred CcceeecchHHHHHHHh
Confidence 57999999999999866
No 15
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=31.36 E-value=72 Score=31.68 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHhCh----------HHHHHHHhh
Q psy7256 351 KVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNE----------EPIFQWLSS 395 (398)
Q Consensus 351 ~~~~Ff~~~~~g~~~~~~~qalEti~~NI~Wl~~n~----------~~i~~Wl~~ 395 (398)
.+|+|.+....+...+.+++=+++++.|.+|+++-+ ++|..|++.
T Consensus 229 ~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~ 283 (299)
T PF03715_consen 229 QLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESE 283 (299)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHh
Confidence 367777765555667889999999999999998654 457888754
No 16
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=30.26 E-value=50 Score=24.68 Aligned_cols=47 Identities=6% Similarity=0.135 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhhhccc---CCchhhHHHHHHHHHHHHHHHHHhChHHHHHHHhhhcC
Q psy7256 344 SERKLLLKVKAFFKDMD---VGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ 398 (398)
Q Consensus 344 t~~~~l~~~~~Ff~~~~---~g~~~~~~~qalEti~~NI~Wl~~n~~~i~~Wl~~~~~ 398 (398)
|. +|+.+|+.||+... .+-....+++- -.- +--.+..|.-||++|.|
T Consensus 9 t~-~Q~~~Le~~fe~~~y~~~~~~~~~r~~l----a~~---lgl~~~vvKVWfqN~k~ 58 (58)
T TIGR01565 9 TA-EQKEKMRDFAEKLGWKLKDKRREEVREF----CEE---IGVTRKVFKVWMHNNKK 58 (58)
T ss_pred CH-HHHHHHHHHHHHcCCCCCCCCHHHHHHH----HHH---hCCCHHHeeeecccCCC
Confidence 55 99999999999651 11111122221 111 23456788889999876
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=30.18 E-value=1.3e+02 Score=21.37 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHhChHHHHHHHhhh
Q psy7256 344 SERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSY 396 (398)
Q Consensus 344 t~~~~l~~~~~Ff~~~~~g~~~~~~~qalEti~~NI~Wl~~n~~~i~~Wl~~~ 396 (398)
|. +++..|+.+|....-.+.. .++.+- +-+.-....|..||++.
T Consensus 8 t~-~q~~~L~~~f~~~~~p~~~-----~~~~la---~~l~l~~~~V~~WF~nr 51 (57)
T PF00046_consen 8 TK-EQLKVLEEYFQENPYPSKE-----EREELA---KELGLTERQVKNWFQNR 51 (57)
T ss_dssp SH-HHHHHHHHHHHHSSSCHHH-----HHHHHH---HHHTSSHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHhcccccc-----cccccc---ccccccccccccCHHHh
Confidence 44 8999999999975332222 222222 22366788999999763
No 18
>KOG0810|consensus
Probab=29.04 E-value=19 Score=35.74 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=24.4
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Q psy7256 35 VAVCSQNRALIIASVVLSILFLSSLIIAYVGPQN 68 (398)
Q Consensus 35 ~~~~~~~~~~~i~~~~~~~~~gfAt~~ey~~~~~ 68 (398)
-|+|+|++||+..+|++..++.++.++.++....
T Consensus 259 kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~ 292 (297)
T KOG0810|consen 259 KAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVP 292 (297)
T ss_pred HHHHHHHHhhhceeeeehHHHHHHHHHhhhhccc
Confidence 5899999999777776666666666666655443
No 19
>KOG4686|consensus
Probab=26.64 E-value=23 Score=35.71 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCCccccchhhhccccccccccccccccccccccccccccccc--chhHHHHHHHHHHHHHHHHHHhcCCcCCCCCCC
Q psy7256 1 MNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRA--LIIASVVLSILFLSSLIIAYVGPQNDCPCIGEK 76 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~gfAt~~ey~~~~~~~P~w~~~ 76 (398)
|.+||.+..+-+-|+- ..+|+|.-++.-- ..+|--|++ +-..+.||+-++||-+||-|-++..++...+.+
T Consensus 1 m~eee~~r~~ll~g~i---~~a~r~~~~~~~~--~~~~c~PS~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d 73 (459)
T KOG4686|consen 1 MKEEEVHRILLLSGLI---LRAGRRDNELFSF--YFVYCIPSALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD 73 (459)
T ss_pred CchhhhhHHHHHhcCc---cccccCCcccccc--cceeecchhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcc
Confidence 5667777777666666 6677775444221 344444444 345678899999999999999998887665543
No 20
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=22.88 E-value=1.2e+02 Score=22.90 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcc--cCCchhhHHHHHHHHHHHHHHHHHhChHHHHHHHhhh
Q psy7256 346 RKLLLKVKAFFKDM--DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSY 396 (398)
Q Consensus 346 ~~~l~~~~~Ff~~~--~~g~~~~~~~qalEti~~NI~Wl~~n~~~i~~Wl~~~ 396 (398)
...++.+..+.+.. ...-...+++.|++.-+.|++.++ ..+.+|.++.
T Consensus 15 ~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~~~~~~~Yi~---~Il~~W~~~g 64 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPELIKEALKEAVSNNKANYKYID---AILNNWKNNG 64 (73)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHcC
Confidence 36777777887764 334456677777766556777666 5667777543
Done!