RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7256
(398 letters)
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 86.3 bits (214), Expect = 2e-18
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 33/109 (30%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAP 196
HK+GNAE D W+ + S VK +M+ W + G+PVI++ R +
Sbjct: 381 HKFGNAEGSDLWTAIEDVSG--KPVKRVMEYWIKNPGYPVIKLKRNGRK----------- 427
Query: 197 PPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQT 245
+ QTRFLL + +W VP++
Sbjct: 428 -----ITMYQTRFLLN---------------GEEEGRWPVPVNIKKKDG 456
Score = 55.4 bits (134), Expect = 2e-08
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 333 RFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQ 391
R +E + + + +++ + + L + +E + +N V R + +
Sbjct: 725 RTVEMMIPVIGLDHP---DAEDIVRNIGSKNISMGLAKGIEMLAVNRKLVERIRQTAVK 780
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 81.4 bits (201), Expect = 8e-17
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 54/151 (35%)
Query: 137 HKYGNAETKDFWSVLSKHSNHS-------------------------INVKAIMDTWSRQ 171
H Y N + +D W ++ ++VK +M+TW+ Q
Sbjct: 423 HSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQ 482
Query: 172 MGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYD 231
GFP+I I+ Q ++ ++
Sbjct: 483 KGFPLITITV-------RGRN---------VHMKQEHYMKGSD-----------GAPDTG 515
Query: 232 YKWYVPLSYYTDQTGYKEQEIVWMNMTDGEF 262
Y W+VPL++ T +
Sbjct: 516 YLWHVPLTFITS--KSDMVHRFLLKTKTDVL 544
Score = 62.9 bits (153), Expect = 9e-11
Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 37/162 (22%)
Query: 271 LRNVPKWRKYWKLIMKKDNPEEKEKLE------WERKYLHKIMLKFLN------------ 312
++ W + + EK ++E ++ L ++ +
Sbjct: 731 AQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQI 790
Query: 313 -----------------VVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAF 355
+ +N + + +T S R L +VK F
Sbjct: 791 LTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVM-GTTNQFSTRTRLEEVKGF 849
Query: 356 FKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSY 396
F + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 850 FSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSE 891
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 81.4 bits (201), Expect = 8e-17
Identities = 28/151 (18%), Positives = 41/151 (27%), Gaps = 48/151 (31%)
Query: 137 HKYGNAETKDFWSVLSKHSNHS-------------------------INVKAIMDTWSRQ 171
Y NA+ D WS LS S VK +M TW+ Q
Sbjct: 485 FSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQ 544
Query: 172 MGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYD 231
G P++ + + + + Q RFL G
Sbjct: 545 KGIPLLVVKQ-------DGCS---------LRLQQERFLQ-----GVFQEDPEWRALQER 583
Query: 232 YKWYVPLSYYTDQTGYKEQEIVWMNMTDGEF 262
Y W++PL+Y T +
Sbjct: 584 YLWHIPLTYSTS--SSNVIHRHILKSKTDTL 612
Score = 59.8 bits (145), Expect = 8e-10
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 41/166 (24%)
Query: 271 LRNVPKWRKYWKLIMKKDNPEEKEKL----------EWERKYL----------------- 303
+ W + + E+ K+ E K +
Sbjct: 799 AQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAAL 858
Query: 304 ----------HKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVK 353
++ F+ EN I + S+ KL +VK
Sbjct: 859 LHAIARRPKGQQLAWDFV--RENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQ-EVK 915
Query: 354 AFFKDMDV-GSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ 398
FF+ ++ GS + LETI NI W+ +N + WL +
Sbjct: 916 LFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR 961
Score = 35.9 bits (83), Expect = 0.027
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 32 HNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRP 91
H+ V S + + L I C C
Sbjct: 3 HSSAMVNSHRKPMFNIHRGFYCLTAILPQI--------CICSQFSVPSSYHFT---EDPG 51
Query: 92 VIPIATSGEVFPWNNVRLPTST 113
P+AT+GE FPW +RLP+
Sbjct: 52 AFPVATNGERFPWQELRLPSVV 73
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 61.0 bits (148), Expect = 3e-10
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 12/108 (11%)
Query: 137 HKYGNAETKDFWSVLSKHSNH---SINVKAIMDTWSRQMGFPVIRISRITP--------- 184
H + + T +F L + +I ++ W + G P +
Sbjct: 416 HAFQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDKQI 475
Query: 185 QHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDY 232
T P +++ + + N P + +++ +D
Sbjct: 476 NQLVTDELTLEQLPTAQWTLHEWLHFINNLPVDLDHQRMVNLDKAFDL 523
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 60.2 bits (146), Expect = 3e-10
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 333 RFIEFNSTRVPSERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQ 391
+ + + + +L +VK FF + + GS R ++Q++ETIE NI W+ +N + I
Sbjct: 345 HMVMGTTNQFSTRTRLE-EVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRV 403
Query: 392 WLSSY 396
WL S
Sbjct: 404 WLQSE 408
Score = 43.2 bits (102), Expect = 1e-04
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 29/91 (31%)
Query: 173 GFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDY 232
GFP+I I+ Q ++ ++ Y
Sbjct: 1 GFPLITITV-------RGRN---------VHMKQEHYMKGSDG-----------APDTGY 33
Query: 233 KWYVPLSYYTDQTGYKEQEIVWMNMTDGEFL 263
W+VPL++ T + +
Sbjct: 34 LWHVPLTFITS--KSDMVHRFLLKTKTDVLI 62
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 60.2 bits (146), Expect = 6e-10
Identities = 19/179 (10%), Positives = 41/179 (22%), Gaps = 34/179 (18%)
Query: 137 HKYGNAETKDFWSVLSKHS--NHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTP 194
+ +T F L + I +TW + G P ++ +
Sbjct: 421 FAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-----RPHFITALADNV- 474
Query: 195 APPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYD----YKWYVPLSY----YTDQTG 246
Y + D + + + L
Sbjct: 475 -------YQLADKWVEMAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETLTQNGHSNKK 527
Query: 247 YKEQEIVWMNMTDGEFLYSRREQ-------ELRNVPKWRKYWKLIMKKDNPEEKEKLEW 298
K+ + + L ++ E+ ++ + I K E K +W
Sbjct: 528 PKDFDWAKFPVASRALLDIYQDNIVKSQNAEVV----FKMFKFQIFAKLQEEYKHLADW 582
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 59.4 bits (144), Expect = 8e-10
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 22/103 (21%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSIN--VKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTP 194
Y + T D+ L + ++ + + W G P I P + +
Sbjct: 420 FSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPP-----IKPNYDMTLTNA- 473
Query: 195 APPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVP 237
+ +Q + + D K
Sbjct: 474 ------CIALSQRWITAKEDDLN--------SFNATDLKDLSS 502
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 48.3 bits (115), Expect = 3e-06
Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 30/131 (22%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAI----MDTWSRQMGFPVIRISRITPQHSSNSST 192
+ A +DF + + + W Q G P + + +
Sbjct: 415 NDGNTATCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKY---NYDAEKKQ 471
Query: 193 TPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSY--YTDQTGYKEQ 250
YS ++ + ++P+S + G +
Sbjct: 472 ---------YSIHVNQYTKPD------------ENQKEKKPLFIPISVGLINPENGKEMI 510
Query: 251 EIVWMNMTDGE 261
+ +T
Sbjct: 511 SQTTLELTKES 521
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 45.7 bits (108), Expect = 2e-05
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISR 181
H DF + ++ + ++ W Q G PV+
Sbjct: 407 HDGQAVTCDDFRAAMADANGINL---DQFALWYSQAGTPVLEAEG 448
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 5e-05
Identities = 39/248 (15%), Positives = 65/248 (26%), Gaps = 87/248 (35%)
Query: 11 FLTGVNHYQ---SQNGIHKRSLYEH-NGVAVCSQN--RALIIASV------------VLS 52
+ + HY G L + G SQ A+ IA ++
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 53 ILFLSSLIIAYVGP--QNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLP 110
+LF ++G P P L+D N P P+ ++
Sbjct: 302 VLF-------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PML---------SIS-- 342
Query: 111 TSTGMPRPK-TSGVSSANIPTILSTSSHKY---GNAETKDFWSVLSKHSNHSINVKAIMD 166
+ + + V+ N + L N K+ V+S
Sbjct: 343 ---NLTQEQVQDYVNKTN--SHLPAGKQVEISLVNG-AKNL--VVS-------------- 380
Query: 167 TWSRQMGFP------VIRISRITPQHSSNSSTTPAP--PPMIEYSATQTRFLLTNEPYGR 218
G P + + + + S P RFL P+
Sbjct: 381 ------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-----SNRFLPVASPF-- 427
Query: 219 NDSKLLLP 226
S LL+P
Sbjct: 428 -HSHLLVP 434
Score = 40.8 bits (95), Expect = 8e-04
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 23/119 (19%)
Query: 302 YLHKIMLK--FLNVVENIPEE---GDIPSNIVRYCERFIEFNSTRV----PSERKLLLKV 352
+ L+ F ++ E D P+ +F+ + S+ V + +L +
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 353 ------KAFFKDMDVGSGARSLEQSLETIELNIHWVRRN--------EEPIFQWLSSYL 397
+ + D+ + A L Q +T + + +N + P + +S L
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Score = 33.1 bits (75), Expect = 0.19
Identities = 30/233 (12%), Positives = 81/233 (34%), Gaps = 40/233 (17%)
Query: 117 RPKTSGVSSANI-PTIL-STSSHKYGNAETKDFWSVLSKHSNHSIN---VKAIMDTWSRQ 171
RP T +S ++ +L T+S + + F +L + + + +
Sbjct: 7 RPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 172 MGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYD 231
+G+ +S + + E+ + +L N+ + L +
Sbjct: 65 LGY----VSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 232 YKWYVPLSYY-----TDQTGYKEQE-IVWMNMTDGEF-LYS------RRE---QELRNVP 275
+ +Y + K+ ++ + +G L + + +ELR++
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL- 176
Query: 276 KWRKYWKLIM-------KKDNPEEKEKLEWERKYLHKI-MLKFLNVVENIPEE 320
++ Y L+ + + + L+ E+ + + +L++L N P++
Sbjct: 177 -YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Score = 28.9 bits (64), Expect = 3.6
Identities = 72/468 (15%), Positives = 133/468 (28%), Gaps = 165/468 (35%)
Query: 47 ASVV-LSILFLSSLIIAYVGPQNDCPCIGE-KPV-----------FLQDEDLNG--AKRP 91
+ L FL YV + +G+ V +L+ D++ AK
Sbjct: 55 TTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 92 VIPIATSGEVFPWNNVR--LPTSTGMPRPKTSGVSSANIPTILSTSSHKY------GNAE 143
T + ++ + RP +SA + ++ GN +
Sbjct: 110 QENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 144 TKDFWSVLSK-HSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSS------TTPAP 196
D++ L + + + V ++ S + +IR + + + P+
Sbjct: 168 --DYFEELRDLYQTYHVLVGDLIKF-SAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 197 PPMIEY--SA---------TQ-TRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQ 244
P +Y S Q +++T + G +L SY
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL--------------RSYLKGA 270
Query: 245 TGYKEQEIV----------WMNMTDG-----EFLYS--RREQELRNVPKWRKYWKLIMKK 287
TG+ Q +V W + L+ R E P + +
Sbjct: 271 TGHS-QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA--YP--NTSLPPSILE 325
Query: 288 DNPEEKEKLE--------WERKYLHKIMLKFLNVVENIPEEGDI-------PSNIV---- 328
D+ E E + ++ + + K N ++P + N+V
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKT-N--SHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 329 -----------RYCERFIEFNSTRVP-SERKL-----LLKVKAFF--------------- 356
R + + +R+P SERKL L V + F
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 357 ----------KDMDV-------GSGARSLEQSLET------IELNIHW 381
KD+ + GS R L S+ I L + W
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 43.8 bits (103), Expect = 8e-05
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISR 181
H A DF + SN + + W Q G P++ +
Sbjct: 432 HDGSAATCDDFVQAMEDASNVDL---SHFRRWYSQSGTPIVTVKD 473
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 28/200 (14%), Positives = 64/200 (32%), Gaps = 47/200 (23%)
Query: 228 SPYDYK-WYVPLSYYTDQTGYKEQ--EIVWMNMTDGE---FLYSRREQELRNVPKWRKYW 281
P +Y+ + LS + ++W ++ + + +L
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-----NKLHK-------- 413
Query: 282 KLIMKKDNPE-----------EKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRY 330
+++K E K KLE LH+ ++ N+ + + IP + +Y
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 331 CERFIEF------NSTRVPSERKLLL-------KVKAFFKDMDVGSGARSLEQSLETIEL 377
I + R+ R + L K++ + + Q L+ +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 378 NIHWVRRNEEPIFQWLSSYL 397
I N+ + +++ L
Sbjct: 533 YI---CDNDPKYERLVNAIL 549
Score = 41.8 bits (97), Expect = 3e-04
Identities = 44/281 (15%), Positives = 83/281 (29%), Gaps = 73/281 (25%)
Query: 134 TSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTT 193
T H+Y KD SV + + K + D P +S+ H S
Sbjct: 11 TGEHQYQY---KDILSVFEDAFVDNFDCKDVQD-------MPKSILSKEEIDHIIMS--- 57
Query: 194 PAPPPMIEYSATQTRFLLTN-EPYGRNDSKLLLPRS-PYDYKW-YVPLSYYTDQTG---- 246
+ + T L + + +YK+ P+ Q
Sbjct: 58 --KDAV-----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 247 -YKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLI--MKKDNPEEKEKLEWERKY- 302
Y EQ N D + ++++ NV + + Y KL + + P K
Sbjct: 111 MYIEQRDRLYN--DNQ-VFAKY-----NVSRLQPYLKLRQALLELRPA---------KNV 153
Query: 303 -LHKIMLKF------LNVVENIPEEGDIPSNI----VRYCERFIEFNSTRVPSERKLLLK 351
+ +L L+V + + + I ++ C S +L
Sbjct: 154 LIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-----------SPETVLEM 201
Query: 352 VKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQW 392
++ +D S I+L IH ++ + +
Sbjct: 202 LQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Score = 36.0 bits (82), Expect = 0.023
Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 95/253 (37%)
Query: 147 FW-SVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSAT 205
FW ++ + +S ++ ++ + + I P +S S + I
Sbjct: 185 FWLNLKNCNSPETV-LEMLQKLLYQ-----------IDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 206 QTRFLLTNEPYGR--------NDSK-----------LLLPR--------SPYDYKWYVPL 238
+ R LL ++PY ++K LL R S ++ L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISL 291
Query: 239 SYYTDQTGYKEQEIV-----WMNMTDGEFLYSRRE-------------QELRNVPKWRKY 280
+++ E+ +++ + RE + +R+
Sbjct: 292 DHHSM--TLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 281 WKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEF--- 337
WK + L I+ LNV+E P E Y + F
Sbjct: 347 WKHVNCDK--------------LTTIIESSLNVLE--PAE---------YRKMFDRLSVF 381
Query: 338 -NSTRVPSERKLL 349
S +P+ LL
Sbjct: 382 PPSAHIPT--ILL 392
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 264 YSRREQELRNVPKWR-KYWKLIMKKDNPEEKEKLEWE---RKYLHK 305
R QE ++ KWR + K + + D + + EW +K L +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding;
HET: APC; 2.21A {Bacteriophage T4}
Length = 375
Score = 30.2 bits (67), Expect = 1.2
Identities = 27/182 (14%), Positives = 42/182 (23%), Gaps = 22/182 (12%)
Query: 144 TKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQ----------HSSNSSTT 193
D SK S S + + + +N
Sbjct: 111 DGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRLKELAEDGFTANFEFVAPTNRIVL 170
Query: 194 PAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEI- 252
I R T E +D PY + Y S + + I
Sbjct: 171 AYQEMKIIL--LNVRENETGEYISYDDIYKDATLRPYLVERYEIDSPKWIEEAKNAENIE 228
Query: 253 --VWMNMTDGEFL------YSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLH 304
V M DG Y ++ K +K I+ + + K +
Sbjct: 229 GYV-AVMKDGSHFKIKSDWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAMYADDEYSYR 287
Query: 305 KI 306
KI
Sbjct: 288 KI 289
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.5 bits (65), Expect = 1.3
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 265 SRREQELRNVPKWR-KYWKLIMKKDNPEEKEKLEWERK 301
R QE ++ KWR + K + + D + + EW K
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK 130
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization,
protein binding; 2.29A {Homo sapiens}
Length = 1253
Score = 29.8 bits (66), Expect = 2.0
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 288 DNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERK 347
+ +E + L +KI +E I ++ ++IV C + E PSE+
Sbjct: 202 QSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKH 261
Query: 348 LLLKVKAF 355
+LLKV F
Sbjct: 262 MLLKVMGF 269
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.8 bits (67), Expect = 2.2
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 227 RSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYS 265
+ W +Y + V+++ + Y
Sbjct: 577 KEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYK 615
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 27.0 bits (59), Expect = 2.9
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 266 RREQELRNVPKWR-KYWKLIMKKDNPEEKEKLEWERK 301
R + E ++ KWR + + + D K++ EW+ K
Sbjct: 3 RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEK 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.9 bits (62), Expect = 6.8
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 227 RSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYS 265
D+ W + YY D T + ++M + F Y
Sbjct: 536 TGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYG 574
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 27.5 bits (62), Expect = 8.5
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 28/57 (49%)
Query: 85 LNGAKRPVI----------------------PIATSG---EVFPWNNVRLPTSTGMP 116
LN +KRPVI P+ T+G E F W+ TG
Sbjct: 202 LNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDF---EALTGST 255
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.407
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,078,611
Number of extensions: 351296
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 34
Length of query: 398
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 302
Effective length of database: 4,021,377
Effective search space: 1214455854
Effective search space used: 1214455854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)