RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7256
         (398 letters)



>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 137 HKYGNAETKDFWSVLSKHSNHSIN--VKAIMDTWSRQMGFPVIRIS 180
             Y +  T D+   L  +    ++   +   + W    G P I+ +
Sbjct: 206 FSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPN 251


>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 26.3 bits (58), Expect = 2.4
 Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)

Query: 276 KWRKYWKLIMKKDNPEEKEKLE--WE 299
            WR Y  L       EE+ +L    +
Sbjct: 65  NWRAYILLSQDYTGKEEQARLGRCLD 90


>d1exua2 d.19.1.1 (A:4-176) Fc (IgG) receptor, alpha-1 and alpha-2
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 173

 Score = 26.5 bits (58), Expect = 4.7
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 14/113 (12%)

Query: 201 EYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDG 260
            Y   +T  L   E       K L  + PY  +         +               +G
Sbjct: 56  WYWEKETTDLRIKEKLFLEAFKALGGKGPYTLQG----LLGCELGPDNTSVPTAKFALNG 111

Query: 261 EFLYSRREQELRNVPKWRKYWKLIMKKDNPE----------EKEKLEWERKYL 303
           E   +   ++      W +   +  +    +                  R++L
Sbjct: 112 EEFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFLLFSCPHRLREHL 164


>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 172

 Score = 26.1 bits (57), Expect = 5.2
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 7/39 (17%)

Query: 3   DHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQN 41
             DV +V+F+   N+  +    + R       V V  +N
Sbjct: 113 KADVAEVSFVAQANYEAALGKNYVR-------VVVIPEN 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,518,702
Number of extensions: 71353
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 13
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)