BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7259
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
           Lipase Related Protein 2 From Horse
          Length = 452

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 18/197 (9%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLV-ELNFTQYDRIHMIGHSLGAHV 257
           N I++DWS  A  + Y         VG   A ++ +L+ EL++   + +H+IGHSLGAH 
Sbjct: 102 NCISVDWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNP-ENVHIIGHSLGAHT 159

Query: 258 SGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXX------XXX 311
           +G  G   + ++ R+TGLDPA P F      ++RLD SDAQFVDVIHT            
Sbjct: 160 AGEAGRRLEGRVGRVTGLDPAEPCFQD-ASEEVRLDPSDAQFVDVIHTDASPMLPSLGFG 218

Query: 312 XXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESIV 364
               +GH DF+PN GK   PGC   S +       +++       C+H++S+E Y+ SI+
Sbjct: 219 MSQKVGHMDFFPNGGK-QMPGCKRSSFSTFIDINGIWQGAQDYLACNHLKSFEYYSSSIL 277

Query: 365 NPKAFKSIKCDSWYDYE 381
           NP  F +  CDS+  ++
Sbjct: 278 NPDGFLAYPCDSYDKFQ 294



 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 58  NKESEFLINITDVNFADELRKIWNYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDF 115
           N +S  LI   DV       K  N++   K   + HG+         +++    L     
Sbjct: 46  NPDSYQLITARDV----ATIKSSNFQSSRKTHFVIHGFRDRGEDSWPSDMCKKILQVETT 101

Query: 116 NVITLDWSYTASTKNYPVPAVMTHQVGKLAAEMVNKLV-ELNFTQYDRIHMIGHSLGAHV 174
           N I++DWS  A  + Y         VG   A ++ +L+ EL++   + +H+IGHSLGAH 
Sbjct: 102 NCISVDWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNP-ENVHIIGHSLGAHT 159

Query: 175 SGATGTYCKEKMARITA 191
           +G  G   + ++ R+T 
Sbjct: 160 AGEAGRRLEGRVGRVTG 176



 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYE 36
           + C+H++S+E Y+ SI+NP  F +  CDS+  ++
Sbjct: 261 LACNHLKSFEYYSSSILNPDGFLAYPCDSYDKFQ 294


>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
          Length = 452

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 108/213 (50%), Gaps = 20/213 (9%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKL-VELNFTQYDRIHMIGHSLGAHV 257
           N I +DW   + T+ Y   +  T  VG   A +V  L  E+ ++  + +H+IGHSLGAHV
Sbjct: 102 NCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSP-ENVHLIGHSLGAHV 159

Query: 258 SGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXX------XXX 311
            G  G   +  + RITGLDPA P F  L   ++RLD SDA FVDVIHT            
Sbjct: 160 VGEAGRRLEGHVGRITGLDPAEPCFQGLP-EEVRLDPSDAMFVDVIHTDSAPIIPYLGFG 218

Query: 312 XXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESIV 364
               +GH DF+PN GK   PGC +  L+       +++   +   C+H+RSY+ Y  SI+
Sbjct: 219 MSQKVGHLDFFPNGGK-EMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSIL 277

Query: 365 NPKAFKSIKCDSWYDYESKTY--CNESDIQYMG 395
           NP  F    C S+  ++      C E     MG
Sbjct: 278 NPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMG 310



 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 78  KIWNYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPA 135
           K  N+++D K   I HG+I       + ++          N I +DW   + T+ Y   +
Sbjct: 62  KFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE-YTQAS 120

Query: 136 VMTHQVGKLAAEMVNKL-VELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
             T  VG   A +V  L  E+ ++  + +H+IGHSLGAHV G  G   +  + RIT 
Sbjct: 121 YNTRVVGAEIAFLVQVLSTEMGYSP-ENVHLIGHSLGAHVVGEAGRRLEGHVGRITG 176



 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYESKTY--CNESDIQYMG 50
           V C+H+RSY+ Y  SI+NP  F    C S+  ++      C E     MG
Sbjct: 261 VACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMG 310


>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
          Length = 485

 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 102/199 (51%), Gaps = 17/199 (8%)

Query: 197 DFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAH 256
           + N I +DW    S   Y   A     VG   A+M++ L+        ++H+IGHSLGAH
Sbjct: 125 EVNCICVDWK-KGSQATYTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAH 183

Query: 257 VSGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXXXX------ 310
           V+G  G+     ++RITGLDP    F      ++RLD SDA FVDVIHT           
Sbjct: 184 VAGEAGSKTP-GLSRITGLDPVEASFES-TPEEVRLDPSDADFVDVIHTDAAPLIPFLGF 241

Query: 311 XXXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESI 363
                +GH DF+PN G+   PGC + +L+       ++        C+H+RSY+ Y ESI
Sbjct: 242 GTNQQMGHLDFFPNGGES-MPGCKKNALSQIVDLDGIWAGTRDFVACNHLRSYKYYLESI 300

Query: 364 VNPKAFKSIKCDSWYDYES 382
           +NP  F +  C S+  +ES
Sbjct: 301 LNPDGFAAYPCTSYKSFES 319



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 81  NYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMT 138
           N+++D K   I HG+I       V ++        + N I +DW    S   Y   A   
Sbjct: 90  NFQMDRKTRFIIHGFIDKGDESWVTDMCKKLFEVEEVNCICVDWK-KGSQATYTQAANNV 148

Query: 139 HQVGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
             VG   A+M++ L+        ++H+IGHSLGAHV+G  G+     ++RIT 
Sbjct: 149 RVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAGSKTP-GLSRITG 200



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYES-KTY-CNESDIQYMGDPVQPTGNKE 60
           V C+H+RSY+ Y ESI+NP  F +  C S+  +ES K + C +     MG        + 
Sbjct: 285 VACNHLRSYKYYLESILNPDGFAAYPCTSYKSFESDKCFPCPDQGCPQMGHYADKFAGRT 344

Query: 61  SE----FLINITDV-NFADELRKIWNYEVDLKI 88
           SE    F +N  +  NFA      W Y V + +
Sbjct: 345 SEEQQKFFLNTGEASNFAR-----WRYGVSITL 372


>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
           Angstroms Resolution
 pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
           Angstroms Resolution
          Length = 449

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 24/199 (12%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYD----RIHMIGHSLG 254
           N I +DW   + T      +  +  V I+ AE V  LV +  + +D     +H+IGHSLG
Sbjct: 101 NCICVDWKSGSRTAY----SQASQNVRIVGAE-VAYLVGVLQSSFDYSPSNVHIIGHSLG 155

Query: 255 AHVSGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXX------ 308
           +H +G  G      + RITGLDPA P F       +RLD SDAQFVDVIHT         
Sbjct: 156 SHAAGEAGRRTNGAVGRITGLDPAEPCFQGTP-ELVRLDPSDAQFVDVIHTDIAPFIPNL 214

Query: 309 XXXXXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTE 361
                   GH DF+PN GK   PGC +  L+       +++       C+H+RSY+ YT+
Sbjct: 215 GFGMSQTAGHLDFFPNGGK-EMPGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKYYTD 273

Query: 362 SIVNPKAFKSIKCDSWYDY 380
           SI+NP  F    C S+ D+
Sbjct: 274 SILNPDGFAGFSCASYSDF 292



 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 5   CSHMRSYELYTESIVNPKAFKSIKCDSWYDYESKTY--CNESDIQYMGD-----PVQPTG 57
           C+H+RSY+ YT+SI+NP  F    C S+ D+ +     C+      MG      P +  G
Sbjct: 262 CNHLRSYKYYTDSILNPDGFAGFSCASYSDFTANKCFPCSSEGCPQMGHYADRFPGRTKG 321

Query: 58  NKESEFLINITDV-NFADELRKIWNYEVDLKI 88
             +  F +N  D  NFA      W Y VD+ +
Sbjct: 322 VGQL-FYLNTGDASNFAR-----WRYRVDVTL 347



 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 87  KIITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAA 146
           + I HG+I       ++ +          N I +DW  + S   Y   +     VG   A
Sbjct: 72  RFIIHGFIDKGEESWLSTMCQNMFKVESVNCICVDWK-SGSRTAYSQASQNVRIVGAEVA 130

Query: 147 EMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
            +V  L          +H+IGHSLG+H +G  G      + RIT 
Sbjct: 131 YLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITG 175


>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
          Length = 450

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 17/199 (8%)

Query: 197 DFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAH 256
           + N I +DW   + T +Y   A     VG   A+M++ L         ++ +IGHSLGAH
Sbjct: 100 EVNCICVDWKKGSQT-SYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAH 158

Query: 257 VSGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXXXX------ 310
           V+G  G+     + RITGLDP    F      ++RLD +DA FVDVIHT           
Sbjct: 159 VAGEAGSR-TPGLGRITGLDPVEASFQG-TPEEVRLDPTDADFVDVIHTDAAPLIPFLGF 216

Query: 311 XXXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESI 363
                +GH DF+PN G+   PGC + +L+       +++       C+H+RSY+ Y+ESI
Sbjct: 217 GTSQQMGHLDFFPNGGEE-MPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESI 275

Query: 364 VNPKAFKSIKCDSWYDYES 382
           +NP  F S  C S+  +ES
Sbjct: 276 LNPDGFASYPCASYRAFES 294



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 81  NYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMT 138
           N++ D K   I HG+I       + ++        + N I +DW   + T +Y   A   
Sbjct: 65  NFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT-SYTQAANNV 123

Query: 139 HQVGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
             VG   A+M++ L         ++ +IGHSLGAHV+G  G+     + RIT 
Sbjct: 124 RVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSR-TPGLGRITG 175



 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYESKTY--CNESDIQYMGDPVQ----PT 56
           V C+H+RSY+ Y+ESI+NP  F S  C S+  +ES     C +     MG         T
Sbjct: 260 VACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAVKT 319

Query: 57  GNKESEFLINITD-VNFADELRKIWNYEVDLKI 88
            ++  ++ +N  D  NFA      W Y V + +
Sbjct: 320 SDETQKYFLNTGDSSNFAR-----WRYGVSITL 347


>pdb|1GPL|A Chain A, Rp2 Lipase
          Length = 432

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 94/190 (49%), Gaps = 22/190 (11%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKL-VELNFTQYDRIHMIGHSLGAHV 257
           N I +DW    S   Y   +     VG   A +V  L   LN+   + +H+IGHSLGAH 
Sbjct: 102 NCICVDWK-GGSKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAP-ENVHIIGHSLGAHT 159

Query: 258 SGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHT------XXXXXX 311
           +G  G      + RITGLDPA P F      ++RLD SDA+FVDVIHT            
Sbjct: 160 AGEAGKRLNGLVGRITGLDPAEPYFQD-TPEEVRLDPSDAKFVDVIHTDISPILPSLGFG 218

Query: 312 XXXXLGHADFYPNSGKPPQPGCVELSLNVYKVVSSGFGCSHMRSYELYTESIVNPKAFKS 371
               +GH DF+PN GK   PGC            +G  C+H RS E Y  SI+NP+ F  
Sbjct: 219 MSQKVGHMDFFPNGGK-DMPGC-----------KTGISCNHHRSIEYYHSSILNPEGFLG 266

Query: 372 IKCDSWYDYE 381
             C S+ +++
Sbjct: 267 YPCASYDEFQ 276



 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 58  NKESEFLINITDVNFADELRKIWNYEVDLKIITHGWISSDASLAVANIKNAYLSKTDFNV 117
           N+ S  LI  TD+  A      +N     + I HG+  S  +  ++++          N 
Sbjct: 46  NQNSYQLITATDI--ATIKASNFNLNRKTRFIIHGFTDSGENSWLSDMCKNMFQVEKVNC 103

Query: 118 ITLDWSYTASTKNYPVPAVMTHQVGKLAAEMVNKL-VELNFTQYDRIHMIGHSLGAHVSG 176
           I +DW    S   Y   +     VG   A +V  L   LN+   + +H+IGHSLGAH +G
Sbjct: 104 ICVDWK-GGSKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAP-ENVHIIGHSLGAHTAG 161

Query: 177 ATGTYCKEKMARITA 191
             G      + RIT 
Sbjct: 162 EAGKRLNGLVGRITG 176



 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYE 36
           + C+H RS E Y  SI+NP+ F    C S+ +++
Sbjct: 243 ISCNHHRSIEYYHSSILNPEGFLGYPCASYDEFQ 276


>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
 pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
          Length = 448

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 92/192 (47%), Gaps = 16/192 (8%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVS 258
           N I +DW    S   Y   +     VG   A  V  L          +H+IGHSLG+H +
Sbjct: 101 NCICVDWK-GGSRTGYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAA 159

Query: 259 GATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXX------XXXX 312
           G  G      + RITGLDPA P F       +RLD SDA+FVDVIHT             
Sbjct: 160 GEAGRRTNGTIERITGLDPAEPCFQG-TPELVRLDPSDAKFVDVIHTDAAPIIPNLGFGM 218

Query: 313 XXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESIVN 365
              +GH DF+PN GK   PGC +  L+       +++       C+H+RSY+ Y +SI+N
Sbjct: 219 SQTVGHLDFFPNGGK-QMPGCQKNILSQIVDIDGIWEGTRDFVACNHLRSYKYYADSILN 277

Query: 366 PKAFKSIKCDSW 377
           P  F    CDS+
Sbjct: 278 PDGFAGFPCDSY 289



 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 81  NYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMT 138
           N+ +D K   I HG+I       ++NI          N I +DW    S   Y   +   
Sbjct: 64  NFRMDRKTRFIIHGFIDKGEEDWLSNICKNLFKVESVNCICVDWK-GGSRTGYTQASQNI 122

Query: 139 HQVGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
             VG   A  V  L          +H+IGHSLG+H +G  G      + RIT 
Sbjct: 123 RIVGAEVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAAGEAGRRTNGTIERITG 175



 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYESKTY--CNESDIQYMG---DPVQPTG 57
           V C+H+RSY+ Y +SI+NP  F    CDS+  + +     C       MG   D      
Sbjct: 260 VACNHLRSYKYYADSILNPDGFAGFPCDSYNVFTANKCFPCPSEGCPQMGHYADRFPGKT 319

Query: 58  NKESE-FLINITDV-NFADELRKIWNYEVDLKI 88
           N  S+ F +N  D  NFA      W Y+V + +
Sbjct: 320 NGVSQVFYLNTGDASNFAR-----WRYKVSVTL 347


>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
           By Mixed Micelles Revealed By X-Ray Crystallography
 pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
           Lipase Colipase Complex Inhibited By A C11 Alkyl
           Phosphonate
 pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
          Length = 449

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 186 MARITAYLSKTD-FNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYD 244
           +A +   L K +  N I +DW    S   Y   +     VG   A  V  L         
Sbjct: 87  LANVCKNLFKVESVNCICVDWK-GGSRTGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPS 145

Query: 245 RIHMIGHSLGAHVSGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIH 304
            +H+IGHSLGAH +G  G      + RITGLDPA P F       +RLD SDA+FVDVIH
Sbjct: 146 NVHVIGHSLGAHAAGEAGRRTNGTIGRITGLDPAEPCFQGTP-ELVRLDPSDAKFVDVIH 204

Query: 305 TXXX------XXXXXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCS 351
           T                +GH DF+PN G    PGC +  L+       +++       C+
Sbjct: 205 TDGAPIVPNLGFGMSQVVGHLDFFPNGGV-EMPGCKKNILSQIVDIDGIWEGTRDFAACN 263

Query: 352 HMRSYELYTESIVNPKAFKSIKCDSW 377
           H+RSY+ YT+SIVNP  F    C S+
Sbjct: 264 HLRSYKYYTDSIVNPDGFAGFPCASY 289



 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 87  KIITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAA 146
           + I HG+I       +AN+          N I +DW    S   Y   +     VG   A
Sbjct: 72  RFIIHGFIDKGEENWLANVCKNLFKVESVNCICVDWK-GGSRTGYTQASQNIRIVGAEVA 130

Query: 147 EMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
             V  L          +H+IGHSLGAH +G  G      + RIT 
Sbjct: 131 YFVEFLQSAFGYSPSNVHVIGHSLGAHAAGEAGRRTNGTIGRITG 175



 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 5   CSHMRSYELYTESIVNPKAFKSIKCDSW 32
           C+H+RSY+ YT+SIVNP  F    C S+
Sbjct: 262 CNHLRSYKYYTDSIVNPDGFAGFPCASY 289


>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
 pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
          Length = 466

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 20/213 (9%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKL-VELNFTQYDRIHMIGHSLGAHV 257
           N I +DW +  S   Y         VG   A ++  L  +L ++  D +H+IGHSLGAH 
Sbjct: 104 NCICVDWRH-GSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLED-VHVIGHSLGAHT 161

Query: 258 SGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXX------XXX 311
           +   G     ++ RITGLDPAGP F      ++RLD SDA FVDVIHT            
Sbjct: 162 AAEAGRRLGGRVGRITGLDPAGPCFQD-EPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFG 220

Query: 312 XXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESIV 364
               +GH DF+PN GK   PGC +  L+       +++ +     C+H+RS+E Y+ S++
Sbjct: 221 MSQKVGHLDFFPNGGK-EMPGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVL 279

Query: 365 NPKAFKSIKCDSWYDY-ESKTY-CNESDIQYMG 395
           NP  F    C S+ ++ ESK + C       MG
Sbjct: 280 NPDGFLGYPCASYDEFQESKCFPCPAEGCPKMG 312



 Score = 39.3 bits (90), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDY-ESKTY-CNESDIQYMGDPVQPTGNK- 59
           V C+H+RS+E Y+ S++NP  F    C S+ ++ ESK + C       MG        K 
Sbjct: 263 VSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQESKCFPCPAEGCPKMGHYADQFKGKT 322

Query: 60  ---ESEFLINITDV-NFADELRKIWNYEVDLKI 88
              E  F +N  +  NF       W Y+V + +
Sbjct: 323 SAVEQTFFLNTGESGNFTS-----WRYKVSVTL 350



 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 81  NYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMT 138
           N+++D K   I HG++        +++          N I +DW +  S   Y       
Sbjct: 67  NFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEKVNCICVDWRH-GSRAMYTQAVQNI 125

Query: 139 HQVGKLAAEMVNKL-VELNFTQYDRIHMIGHSLGAHVS 175
             VG   A ++  L  +L ++  D +H+IGHSLGAH +
Sbjct: 126 RVVGAETAFLIQALSTQLGYSLED-VHVIGHSLGAHTA 162


>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
           Mutant N336q
 pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
           Mutant N336q
          Length = 452

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 20/213 (9%)

Query: 199 NVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKL-VELNFTQYDRIHMIGHSLGAHV 257
           N I +DW +  S   Y         VG   A ++  L  +L ++  D +H+IGHSLGAH 
Sbjct: 102 NCICVDWRH-GSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLED-VHVIGHSLGAHT 159

Query: 258 SGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTXXXXXX------ 311
           +   G     ++ RITGLDPAGP F      ++RLD SDA FVDVIHT            
Sbjct: 160 AAEAGRRLGGRVGRITGLDPAGPCFQD-EPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFG 218

Query: 312 XXXXLGHADFYPNSGKPPQPGCVELSLN-------VYKVVSSGFGCSHMRSYELYTESIV 364
               +GH DF+PN GK   PGC +  L+       +++ +     C+H+RS+E Y+ S++
Sbjct: 219 MSQKVGHLDFFPNGGK-EMPGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVL 277

Query: 365 NPKAFKSIKCDSWYDY-ESKTY-CNESDIQYMG 395
           NP  F    C S+ ++ ESK + C       MG
Sbjct: 278 NPDGFLGYPCASYDEFQESKCFPCPAEGCPKMG 310



 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 3   VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDY-ESKTY-CNESDIQYMG 50
           V C+H+RS+E Y+ S++NP  F    C S+ ++ ESK + C       MG
Sbjct: 261 VSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQESKCFPCPAEGCPKMG 310



 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 81  NYEVDLK--IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMT 138
           N+++D K   I HG++        +++          N I +DW +  S   Y       
Sbjct: 65  NFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEKVNCICVDWRH-GSRAMYTQAVQNI 123

Query: 139 HQVGKLAAEMVNKL-VELNFTQYDRIHMIGHSLGAHVS 175
             VG   A ++  L  +L ++  D +H+IGHSLGAH +
Sbjct: 124 RVVGAETAFLIQALSTQLGYSLED-VHVIGHSLGAHTA 160


>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
           Bphd From Burkholderia Xenovorans Lb400.
 pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
           Bphd From Burkholderia Xenovorans Lb400.
 pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
           Bphd From Burkholderia Xenovorans Lb400, After Exposure
           To Its Substrate Hopda
          Length = 286

 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 219 VMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITGLDP 277
           VM  Q G++ A  V  L  ++    DR H++G+S+G    GAT   +  E   RI  L  
Sbjct: 81  VMDEQRGLVNARAVKGL--MDALDIDRAHLVGNSMG----GATALNFALEYPDRIGKLIL 134

Query: 278 AGPG 281
            GPG
Sbjct: 135 MGPG 138


>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
           Burkholderia Xenovorans Lb400
 pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
           Burkholderia Xenovorans Lb400
 pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
           Burkholderia Xenovorans Lb400
 pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
           Burkholderia Xenovorans Lb400
          Length = 286

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 219 VMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITGLDP 277
           VM  Q G++ A  V  L++      DR H++G+S+G    GAT   +  E   RI  L  
Sbjct: 81  VMDEQRGLVNARAVKGLMDA--LDIDRAHLVGNSMG----GATALNFALEYPDRIGKLIL 134

Query: 278 AGPG 281
            GPG
Sbjct: 135 MGPG 138


>pdb|3OUR|A Chain A, Crystal Structure Of Complex Between Eiia And A Novel
           Pyruvate Decarboxylase
 pdb|3OUR|C Chain C, Crystal Structure Of Complex Between Eiia And A Novel
           Pyruvate Decarboxylase
 pdb|3OUR|E Chain E, Crystal Structure Of Complex Between Eiia And A Novel
           Pyruvate Decarboxylase
 pdb|3OUR|G Chain G, Crystal Structure Of Complex Between Eiia And A Novel
           Pyruvate Decarboxylase
          Length = 435

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 109 YLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAAEMVNKLVELNFTQYDRIHMIGH 168
           +L+K D  ++T+D      +  YP    +T    +L   ++N+L  + +  + R+ +IG 
Sbjct: 236 HLAKHDIAMLTVDMPSVGYSSKYP----LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGF 291

Query: 169 SLGAHV 174
             G + 
Sbjct: 292 RFGGNA 297



 Score = 28.5 bits (62), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 192 YLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHMIGH 251
           +L+K D  ++T+D      +  YP    +T     L   ++N+L  + +  + R+ +IG 
Sbjct: 236 HLAKHDIAMLTVDMPSVGYSSKYP----LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGF 291

Query: 252 SLGAHV 257
             G + 
Sbjct: 292 RFGGNA 297


>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
           Hydrolase, Bphd From Burkholderia Xenovorans Lb400
 pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
           Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
           After Exposure To Its Substrate Hopda
          Length = 286

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 219 VMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITGLDP 277
           VM  Q G++ A  V  L  ++    DR H++G+++G    GAT   +  E   RI  L  
Sbjct: 81  VMDEQRGLVNARAVKGL--MDALDIDRAHLVGNAMG----GATALNFALEYPDRIGKLIL 134

Query: 278 AGPG 281
            GPG
Sbjct: 135 MGPG 138


>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
           Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
 pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
           Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
           Complex With Its Substrate Hopda
          Length = 286

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 219 VMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITGLDP 277
           VM  Q G++ A  V  L  ++    DR H++G+++G    GAT   +  E   RI  L  
Sbjct: 81  VMDEQRGLVNARAVKGL--MDALDIDRAHLVGNAMG----GATALNFALEYPDRIGKLIL 134

Query: 278 AGPG 281
            GPG
Sbjct: 135 MGPG 138


>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
           Bphd From Burkholderia Xenovorans Lb400, In Complex With
           3-Cl Hopda
 pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
           Bphd From Burkholderia Xenovorans Lb400, In Complex With
           3,10-Di-Fluoro Hopda
 pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
           From Burkholderia Xenovorans Lb400
          Length = 283

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 219 VMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITGLDP 277
           VM  Q G++ A  V  L  ++    DR H++G+++G    GAT   +  E   RI  L  
Sbjct: 78  VMDEQRGLVNARAVKGL--MDALDIDRAHLVGNAMG----GATALNFALEYPDRIGKLIL 131

Query: 278 AGPG 281
            GPG
Sbjct: 132 MGPG 135


>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
           Bphd From Burkholderia Xenovorans Lb400, In Complex With
           Its Substrate Hopda
          Length = 286

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 219 VMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITGLDP 277
           VM  Q G++ A  V  L  ++    DR H++G+++G    GAT   +  E   RI  L  
Sbjct: 81  VMDEQRGLVNARAVKGL--MDALDIDRAHLVGNAMG----GATALNFALEYPDRIGKLIL 134

Query: 278 AGPG 281
            GPG
Sbjct: 135 MGPG 138


>pdb|3MVE|A Chain A, Crystal Structure Of A Novel Pyruvate Decarboxylase
 pdb|3MVE|B Chain B, Crystal Structure Of A Novel Pyruvate Decarboxylase
          Length = 415

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 109 YLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAAEMVNKLVELNFTQYDRIHMIGH 168
           +L+K D  ++T+D      +  YP    +T    +L   ++N+L  + +  + R+ +IG 
Sbjct: 216 HLAKHDIAMLTVDMPSVGYSSKYP----LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGF 271

Query: 169 SLGAHVSGATGTYCKEKM 186
             G +         +EK+
Sbjct: 272 RFGGNAMVRLSFLEQEKI 289



 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 192 YLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHMIGH 251
           +L+K D  ++T+D      +  YP    +T     L   ++N+L  + +  + R+ +IG 
Sbjct: 216 HLAKHDIAMLTVDMPSVGYSSKYP----LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGF 271

Query: 252 SLGAHVSGATGTYCKEKM 269
             G +         +EK+
Sbjct: 272 RFGGNAMVRLSFLEQEKI 289


>pdb|2XDE|A Chain A, Crystal Structure Of The Complex Of Pf-3450074 With An
           Engineered Hiv Capsid N Terminal Domain
 pdb|2XDE|B Chain B, Crystal Structure Of The Complex Of Pf-3450074 With An
           Engineered Hiv Capsid N Terminal Domain
          Length = 145

 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 137 MTHQVG--KLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKE 184
           M + VG  + A +M+ + +     ++DR+H +G   G+ ++G T T  ++
Sbjct: 56  MLNTVGGHQAAMQMLKETINEEAAEWDRLHPVGEPRGSDIAGTTSTLQEQ 105



 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 228 AAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKE 267
           A +M+ + +     ++DR+H +G   G+ ++G T T  ++
Sbjct: 66  AMQMLKETINEEAAEWDRLHPVGEPRGSDIAGTTSTLQEQ 105


>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
           Synthetase Complexed With Trna(Met)
 pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
           Synthetase Complexed With Trna(Met)
 pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
           Synthetase Complexed With Trna(Met) And
           Methionyl-Adenylate Anologue
 pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
           Synthetase Complexed With Trna(Met) And
           Methionyl-Adenylate Anologue
          Length = 497

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 82  YEVDLKIITHGWISSDA---SLAVANIKNAYLSKTDFNVITLDWSYTASTK-----NYPV 133
           YE+  K+  HGW + +    S  + N+ + Y    ++ +  + +            ++  
Sbjct: 277 YELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSK 336

Query: 134 PAVMTHQVGKLAAEMVNKLVELNFTQYDRIHMIGHS-LGAHVSGAT----GTYCKEKMAR 188
            A++    G+LA E+ N         Y R+  + H  LG  VSGA         +E +  
Sbjct: 337 KAILNRINGELANEIGN--------LYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKN 388

Query: 189 ITAYLSKTDF 198
              Y+ K +F
Sbjct: 389 YENYMEKVNF 398


>pdb|3FK4|A Chain A, Crystal Structure Of Rubisco-Like Protein From Bacillus
           Cereus Atcc 14579
 pdb|3FK4|B Chain B, Crystal Structure Of Rubisco-Like Protein From Bacillus
           Cereus Atcc 14579
          Length = 414

 Score = 28.9 bits (63), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 107 NAYL-SKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAAEMVNKLVELNFTQYDRIHM 165
           N+YL  K    +I +++     + +  +PA++T   GKL+ +   KL++L F+   + H 
Sbjct: 64  NSYLRKKVKRGIIKIEYPLLNFSPD--LPAILTTTFGKLSLDGEVKLIDLTFSDELKKHF 121

Query: 166 IGHSLG 171
            G   G
Sbjct: 122 PGPKFG 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,694,197
Number of Sequences: 62578
Number of extensions: 523279
Number of successful extensions: 1147
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 52
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)