RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7259
(412 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 180 bits (457), Expect = 8e-54
Identities = 86/290 (29%), Positives = 120/290 (41%), Gaps = 35/290 (12%)
Query: 122 WSYTASTKNYPVPAVMTHQVGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTY 181
YT N ++A + + NF + I H G
Sbjct: 40 LLYTNENPNNYQK---------ISATEPDTIKFSNFQLDRKTRFIVH-------GFIDKG 83
Query: 182 CKEKMARIT-AYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNF 240
+ + N I +DW + T Y + T VG A +V L
Sbjct: 84 EDGWLLDMCKKMFQVEKVNCICVDWRRGSRT-EYTQASYNTRVVGAEIAFLVQVLSTEMG 142
Query: 241 TQYDRIHMIGHSLGAHVSGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFV 300
+ +H+IGHSLGAHV G G + + RITGLDPA P F + ++RLD SDA FV
Sbjct: 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAEPCFQ-GLPEEVRLDPSDAMFV 201
Query: 301 DVIHTAAGV------AGYYGVLGHADFYPNSGKPPQPGCVELSL-------NVYKVVSSG 347
DVIHT + G +GH DF+PN GK PGC + L +++ +
Sbjct: 202 DVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGK-EMPGCQKNILSTIVDINGIWEGTQNF 260
Query: 348 FGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYESK--TYCNESDIQYMG 395
C+H+RSY+ Y SI+NP F C S+ ++ C E MG
Sbjct: 261 VACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMG 310
Score = 91.8 bits (227), Expect = 3e-21
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 80 WNYEVDLKIITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMTH 139
+ + + I HG+I + ++ N I +DW + T Y + T
Sbjct: 66 FQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT-EYTQASYNTR 124
Query: 140 QVGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITAYL 193
VG A +V L + +H+IGHSLGAHV G G + + RIT
Sbjct: 125 VVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLD 178
Score = 56.3 bits (135), Expect = 2e-09
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 3 VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYESK--TYCNESDIQYMGDPVQPTGNKE 60
V C+H+RSY+ Y SI+NP F C S+ ++ C E MG K
Sbjct: 261 VACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHYADQFEGKT 320
Query: 61 S 61
+
Sbjct: 321 A 321
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 171 bits (435), Expect = 1e-50
Identities = 82/276 (29%), Positives = 120/276 (43%), Gaps = 27/276 (9%)
Query: 144 LAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARIT-AYLSKTDFNVIT 202
L + + NF + I H G + + + + N I
Sbjct: 53 LLPSDPSTIGASNFQTDKKTRFIIH-------GFIDKGEENWLLDMCKNMFKVEEVNCIC 105
Query: 203 LDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG 262
+DW + T +Y A VG A+M++ L ++ +IGHSLGAHV+G G
Sbjct: 106 VDWKKGSQT-SYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAG 164
Query: 263 TYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFVDVIHTAAGV------AGYYGVL 316
+ + RITGLDP F ++RLD +DA FVDVIHT A G +
Sbjct: 165 SRTP-GLGRITGLDPVEASFQ-GTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQM 222
Query: 317 GHADFYPNSGKPPQPGCVELSL-------NVYKVVSSGFGCSHMRSYELYTESIVNPKAF 369
GH DF+PN G+ PGC + +L +++ C+H+RSY+ Y+ESI+NP F
Sbjct: 223 GHLDFFPNGGEE-MPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGF 281
Query: 370 KSIKCDSWYDYESKT--YCNESDIQYMGDPVQPTWG 403
S C S+ +ES C + MG
Sbjct: 282 ASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAV 317
Score = 86.0 bits (212), Expect = 3e-19
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 80 WNYEVDLKIITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMTH 139
+ + + I HG+I + ++ + N I +DW + T +Y A
Sbjct: 66 FQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT-SYTQAANNVR 124
Query: 140 QVGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITA 191
VG A+M++ L ++ +IGHSLGAHV+G G+ + RIT
Sbjct: 125 VVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTP-GLGRITG 175
Score = 57.1 bits (137), Expect = 1e-09
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 3 VGCSHMRSYELYTESIVNPKAFKSIKCDSWYDYESKT--YCNESDIQYMGDPVQPTGNKE 60
V C+H+RSY+ Y+ESI+NP F S C S+ +ES C + MG K
Sbjct: 260 VACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAVKT 319
Query: 61 SE 62
S+
Sbjct: 320 SD 321
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 37.6 bits (86), Expect = 0.002
Identities = 25/163 (15%), Positives = 44/163 (26%), Gaps = 11/163 (6%)
Query: 88 IITHGWISS-DASLAVANIKNAYLSKTDFNVITLDW-SYTASTKNYPVPAVMTHQVGKLA 145
+I G+ D +A YLS F+V D + + MT L
Sbjct: 36 LIASGFARRMDHFAGLAE----YLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLC 91
Query: 146 AEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATG-TYCKEKMARITAYLSKTDFNVITLD 204
I +I SL A V+ + ++ D L
Sbjct: 92 TVYHWL----QTKGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEKALG 147
Query: 205 WSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIH 247
+ Y + + + + + V E ++ D
Sbjct: 148 FDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTL 190
Score = 35.3 bits (80), Expect = 0.011
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 183 KEKMARITAYLSKTDFNVITLDW-SYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFT 241
+ A + YLS F+V D + + MT L
Sbjct: 45 MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWL----QTK 100
Query: 242 QYDRIHMIGHSLGAHVS 258
I +I SL A V+
Sbjct: 101 GTQNIGLIAASLSARVA 117
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 35.5 bits (81), Expect = 0.010
Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 14/137 (10%)
Query: 88 IITHGWISSDASLAVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAAE 147
++ G ++ +N ++ + + P M +
Sbjct: 35 LLVPGTGTTGPQSFDSNWI-PLSTQLGYTPCWIS-----------PPPFMLNDTQVNTEY 82
Query: 148 MVNKLVEL-NFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITAYLS-KTDFNVITLDW 205
MVN + L + +++ ++ S G V+ T+ +++ ++ D+ L
Sbjct: 83 MVNAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAG 142
Query: 206 SYTASTKNYPVPAVMTH 222
A + P T
Sbjct: 143 PLDALAVSAPSVWQQTT 159
Score = 31.6 bits (71), Expect = 0.17
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 238 LNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITGLDPAGP 280
+ +++ ++ S G V+ T+ +++ L P
Sbjct: 91 YAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 34.4 bits (78), Expect = 0.019
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 88 IITHGWISSDASLAVANIKN--AYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLA 145
++ HG + D L V + L + V + S +++
Sbjct: 11 VLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSE-------------VRG 57
Query: 146 AEMVNKLVEL-NFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARIT 190
+++ ++ E+ + ++++IGHS G + +A T
Sbjct: 58 EQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASAT 103
Score = 32.8 bits (74), Expect = 0.058
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 188 RITAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIH 247
I + L + V + S +++ ++ I+A + +++
Sbjct: 30 GIPSALRRDGAQVYVTEVSQLDTSE-VRGEQLLQQVEEIVAL-----------SGQPKVN 77
Query: 248 MIGHSLGAHVSGATGTYCKEKMARITGLDPAGPG 281
+IGHS G + +A T + G
Sbjct: 78 LIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKG 111
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 31.0 bits (70), Expect = 0.21
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 10/111 (9%)
Query: 174 VSGATGTYC-KEKMARITAYLSKT--DFNVITLDWSYTASTKNYPVPAVMTHQVGILAAE 230
G + C M I + K +V++L+ T + +
Sbjct: 11 WHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQ----VT 66
Query: 231 MVNKLVELNFTQYDRIHMIGHSLGAHVS-GATGTYCKEKMARITGLDPAGP 280
V +++ + + +G S G M + + G
Sbjct: 67 TVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISV--GGQ 115
Score = 29.1 bits (65), Expect = 0.98
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 88 IITHGWISSDASLAVANIKNAYLSKT--DFNVITLDWSYTASTKNYPVPAVMTHQVGKLA 145
+I HG S + + K +V++L+ T + +
Sbjct: 9 VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQ---- 64
Query: 146 AEMVNKLVELNFTQYDRIHMIGHSLG 171
V +++ + + +G S G
Sbjct: 65 VTTVCQILAKDPKLQQGYNAMGFSQG 90
>d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp.
pisi [TaxId: 169388]}
Length = 197
Score = 30.3 bits (68), Expect = 0.25
Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 101 AVANIKNAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGKLAAEMVNKLVELNFTQY 160
++A+ + K + + +Y A+ + +P + + + +
Sbjct: 38 SIASNLESAFGKDGVWIQGVGGAYRATLGDNALPRGTSSAAIREMLGLFQQANTKCPDA- 96
Query: 161 DRIHMIGHSLGAHVSGAT 178
+ G+S GA ++ A+
Sbjct: 97 -TLIAGGYSQGAALAAAS 113
Score = 28.8 bits (64), Expect = 0.84
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 189 ITAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGILAAEMVNKLVELNFTQYDRIHM 248
+ + K + + +Y A+ + +P + + + +
Sbjct: 43 LESAFGKDGVWIQGVGGAYRATLGDNALPRGTSSAAIREMLGLFQQANTKCPDA--TLIA 100
Query: 249 IGHSLGAHVSGATGTYCKEKMA-RITGLDPAGPGFMVLMGNDMRL 292
G+S GA ++ A+ + +I G VL G L
Sbjct: 101 GGYSQGAALAAASIEDLDSAIRDKIAG--------TVLFGYTKNL 137
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 30.1 bits (66), Expect = 0.52
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 88 IITHGWISSDASLAVANIKNA---YLSKTDFNVITLD-----WSYTASTKNYPVPAVMTH 139
+ HG ++S + N+ L+ ++V + W+ +
Sbjct: 62 FLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAF 121
Query: 140 QVGKLAAEMVNKLVE--LNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITAY 192
++A + ++ L T D++H +GHS G + + + RI +
Sbjct: 122 SFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTF 176
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 8/152 (5%)
Query: 192 YLSKTDFNVITLD-----WSYTASTKNYPVPAVMTHQVGILAAEMVNKLVE--LNFTQYD 244
L+ ++V + W+ + +A + ++ L T D
Sbjct: 86 ILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQD 145
Query: 245 RIHMIGHSLGAHVSGATGTYCKEKMARITGLDPAGP-GFMVLMGNDMRLDMSDAQFVDVI 303
++H +GHS G + + + RI P + + M F+ +
Sbjct: 146 KLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKL 205
Query: 304 HTAAGVAGYYGVLGHADFYPNSGKPPQPGCVE 335
+ + +
Sbjct: 206 IFGNKIFYPHHFFDQFLATEVCSRETVDLLCS 237
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241
{Nitrosomonas europaea [TaxId: 915]}
Length = 86
Score = 26.7 bits (58), Expect = 1.8
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 69 DVNFADELRKIW---NYEVDLKIITHGWISSDASLAVANIKNAYLSKTDFNVITLDW 122
+V D +RK W N + + + W+ + + I + + + +FN++ DW
Sbjct: 1 EVQQPDPMRKNWIMENMDSGVIYLLESWLKAKSQETGKEISDIFANAVEFNIVLKDW 57
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal
domain {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 132
Score = 27.4 bits (61), Expect = 1.9
Identities = 15/62 (24%), Positives = 20/62 (32%)
Query: 53 VQPTGNKESEFLINITDVNFADELRKIWNYEVDLKIITHGWISSDASLAVANIKNAYLSK 112
V G +E FL T V L + I+T + L V + K
Sbjct: 53 VAILGKREFGFLSQKTLVEQQQILHNLLKLNPPAIILTKSFTDPTVLLQVNQTYQVPILK 112
Query: 113 TD 114
TD
Sbjct: 113 TD 114
>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 280
Score = 27.6 bits (60), Expect = 2.5
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 8/110 (7%)
Query: 91 HGWISSDASLAVANIKNA--YLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVGK----- 143
G + D A ++ +VI ++ ++ P+ Q
Sbjct: 36 DGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWET 95
Query: 144 -LAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGATGTYCKEKMARITAY 192
L EM L +G S+ + Y ++ +
Sbjct: 96 FLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASL 145
Score = 27.6 bits (60), Expect = 3.1
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 6/122 (4%)
Query: 187 ARITAYLSKTDFNVITLDWSYTASTKNYPVPAVMTHQVG------ILAAEMVNKLVELNF 240
++ +VI ++ ++ P+ Q L EM L
Sbjct: 51 TPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKG 110
Query: 241 TQYDRIHMIGHSLGAHVSGATGTYCKEKMARITGLDPAGPGFMVLMGNDMRLDMSDAQFV 300
+G S+ + Y ++ L + L M+D+
Sbjct: 111 VSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGY 170
Query: 301 DV 302
+
Sbjct: 171 NA 172
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 27.7 bits (61), Expect = 2.9
Identities = 7/78 (8%), Positives = 24/78 (30%)
Query: 161 DRIHMIGHSLGAHVSGATGTYCKEKMARITAYLSKTDFNVITLDWSYTASTKNYPVPAVM 220
+ + + G + G +++ G + + ++ + + YP
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTP 70
Query: 221 THQVGILAAEMVNKLVEL 238
T + + + + L
Sbjct: 71 TANMKSWSGNQIASVANL 88
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 27.2 bits (59), Expect = 3.2
Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 9/124 (7%)
Query: 68 TDVNFADELRKIWNYEVDLKIITHGWISSDASLAVA------NIKNAYLSKTDFNVITLD 121
++ +E + W+ ++ L+ + + + +A + L +
Sbjct: 81 MAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRAN 140
Query: 122 WSYTASTKNYPVPAVMTHQ---VGKLAAEMVNKLVELNFTQYDRIHMIGHSLGAHVSGAT 178
K Y P + G + + K + H +GH+ GA
Sbjct: 141 SHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAEHDPDG 200
Query: 179 GTYC 182
C
Sbjct: 201 LAEC 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.410
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,571,186
Number of extensions: 72636
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 35
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)