RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7262
(840 letters)
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 615 bits (1587), Expect = 0.0
Identities = 283/473 (59%), Positives = 329/473 (69%), Gaps = 81/473 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GV+++ VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA NP NT+FDAKRLIGRKF
Sbjct: 19 GVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKF 78
Query: 409 EDATVQADMKHWPFEVVSDG-GKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D+ VQ+DMKHWPF+V + G KP I+V Y+GE KTF PEE+SSMVL KMKE AE
Sbjct: 79 DDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAE----- 133
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
AYLGK V +AV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAIAYG
Sbjct: 134 --------AYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
LDKK G GE+NVLIFDLGGGTFDVS+LTIEDGIFE + G T
Sbjct: 186 LDKK-----GDGEKNVLIFDLGGGTFDVSLLTIEDGIFE--------VKATAGDT----- 227
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
LGG FD ++ F V +DF +
Sbjct: 228 ----------------------HLGGEDFDNRLVE-----FCV-----------QDFKRK 249
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 707
+ +R ++ T +RA R L ++ TQA+IEIDSLFEG+D+ +
Sbjct: 250 NRGKDLSSNQRALRRLRTQCERAKRTLSSS-----------TQATIEIDSLFEGIDYNVT 298
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
I+RARFEEL D FR T++PVEK L+DA MDK +H++VLVGGSTRIPKVQ L++DFFNG
Sbjct: 299 ISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNG 358
Query: 768 KELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
KE KSINPDEAVAYGAAVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGGV
Sbjct: 359 KEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGV 411
Score = 386 bits (994), Expect = e-123
Identities = 149/207 (71%), Positives = 183/207 (88%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI+RNTTIPTK++Q FTTY+DNQPGVLIQV+EGERAMTKDNNLLGKF L IPPAPR
Sbjct: 412 MTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPR 471
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNV+A +KSTGK NKITITND+GRLSK DI+RMVN+AEKYKAED
Sbjct: 472 GVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAED 531
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
E + + AKN LE+YC++MK+T++DEK+K K+SD+++ I ++ ++WL+ NQLAEK
Sbjct: 532 EANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591
Query: 181 EEFEHKQKELEAICNPIITKLYQGSGG 207
EEFEHKQKE+E++CNPI+TK+YQ +GG
Sbjct: 592 EEFEHKQKEVESVCNPIMTKMYQAAGG 618
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 601 bits (1552), Expect = 0.0
Identities = 247/480 (51%), Positives = 304/480 (63%), Gaps = 90/480 (18%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++ V + G E+IAND+GNRTTPS VAFT ERL+G AAK Q NP NT+F KRL
Sbjct: 9 TNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPKNTVFSVKRL 68
Query: 404 IGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGRKF D VQ D+KH P++VV G ++V Y GE TF PE++S+MVL K+KETAE
Sbjct: 69 IGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQISAMVLQKLKETAE 126
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLG+ V++AVITVPAYFND+QRQATKD+G IAGLNVLRIINEPTAA
Sbjct: 127 -------------AYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAA 173
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYGLDKK ERNVL+FDLGGGTFDVSIL I DG+FE VL G T
Sbjct: 174 ALAYGLDKK------DKERNVLVFDLGGGTFDVSILEIGDGVFE------VL--ATNGDT 219
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
LGG FD ++
Sbjct: 220 H---------------------------LGGEDFDNRLV--------------------- 231
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFE- 700
+ V F K+KY DL+ + RAL+RLR A E+AK LSS T+ ++ +
Sbjct: 232 ---DHFVEEF----KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMAD 284
Query: 701 GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 760
G D ++TRA+FEEL ADLF T+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L
Sbjct: 285 GKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQEL 344
Query: 761 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
+++FF GKE +K +NPDEAVA GAAVQA +L G +V+D+LLLDVTPLSLGIET GGV
Sbjct: 345 VKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGV 401
Score = 289 bits (742), Expect = 1e-87
Identities = 112/204 (54%), Positives = 145/204 (71%), Gaps = 8/204 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNTTIPTK++Q F+T +DNQ V IQVY+GER M DN LLG FEL IPPAPR
Sbjct: 402 MTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPR 461
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGIL V+A +K TGKE KITIT G LS ++IERMV DAE+Y AED
Sbjct: 462 GVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAED 520
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAE 179
+K+K I AKN E Y ++++ ++++E DK+ +A++ K + I+WL + +
Sbjct: 521 KKRKERIEAKNEAEEYVYSLEKSLKEE--GDKLPEADKK----KVEEAIEWLKEELEGED 574
Query: 180 KEEFEHKQKELEAICNPIITKLYQ 203
KEE E K +EL+ + PI ++YQ
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMYQ 598
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 549 bits (1418), Expect = 0.0
Identities = 241/444 (54%), Positives = 296/444 (66%), Gaps = 88/444 (19%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVF++G+VEIIANDQGNR TPSYVAFTD ERLIGDAAKNQ NP NTIFD KRLIGRKF
Sbjct: 16 GVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPENTIFDVKRLIGRKF 75
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
+D VQ D+K P++VV+ GKP I+V+ KGE KTF PEE+S+MVLTKMKE AE
Sbjct: 76 DDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVLTKMKEIAE------ 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLGK V +AV+TVPAYFND+QRQATKD+GTIAGLNV+RIINEPTAAAIAYGL
Sbjct: 130 -------AYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGL 182
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFDV 585
DKK GE+N+L+FDLGGGTFDVS+LTI++G+FE +G+ + LGG FD
Sbjct: 183 DKK------GGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTH-----LGGEDFDQ 231
Query: 586 SILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 645
++ E+F I+ +F+ K D
Sbjct: 232 RVM---EHF----------------------------IK--LFKKKH----------GKD 248
Query: 646 NRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY 705
+Q+ +R+ +K KRA LSS Q IEI+SLF+G DF
Sbjct: 249 ISKDKRALQKLRREVEK----AKRA--------------LSSQHQTRIEIESLFDGEDFS 290
Query: 706 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 765
++TRA+FEELN DLF+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FF
Sbjct: 291 ETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFF 350
Query: 766 NGKELNKSINPDEAVAYGAAVQAA 789
NGKE ++ INPDEAVAYGAAVQA
Sbjct: 351 NGKEPSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 506 bits (1307), Expect = e-170
Identities = 214/480 (44%), Positives = 282/480 (58%), Gaps = 106/480 (22%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G+ ++I N +G RTTPS VAFT ERL+G AK Q NP NTIF KRL+GR+
Sbjct: 18 VMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRD 77
Query: 409 EDATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
E+ VQ D+K P+++V D G ++++ K + P+E+S+M+L K+K+ AE YLG+
Sbjct: 78 EE--VQKDIKLVPYKIVKADNGDAWVEID----GKKYTPQEISAMILQKLKKDAEDYLGE 131
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V+ AVIT VPAYFND+QRQATKD+G IAGL VLRIINEPTAAA+AYG
Sbjct: 132 KVTEAVIT-------------VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
LDKK G+ +L++DLGGGTFDVSIL I DG+FE VL G T
Sbjct: 179 LDKK-------GDEKILVYDLGGGTFDVSILEIGDGVFE------VL--STNGDTH---- 219
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
LGG FD R
Sbjct: 220 -----------------------LGGDDFD----------------------------QR 228
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FEGVD--- 703
++++ EFK++ DL +K AL+RL+ A E+AK LSS+ Q I +L F D
Sbjct: 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFITADASG 285
Query: 704 ---FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 760
+TRA+FEEL DL T+EP +++L+DA + + I +++LVGGSTR+P VQ+L
Sbjct: 286 PKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQEL 345
Query: 761 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
+++FF GKE NK +NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGV
Sbjct: 346 VKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGV 400
Score = 268 bits (688), Expect = 2e-79
Identities = 100/209 (47%), Positives = 135/209 (64%), Gaps = 6/209 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+F LT IPPAPR
Sbjct: 401 MTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPR 460
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGI++V+A +K TGKE ITIT G LS E+IERMV DAE ED
Sbjct: 461 GVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAEED 519
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
+K+K ++ A+N +S + + T+++ L DK+ E+ +I ++ + L +K
Sbjct: 520 KKRKELVEARNQADSLIYQTEKTLKE--LGDKVPADEKEKIEAAIKELKEALKGE---DK 574
Query: 181 EEFEHKQKELEAICNPIITKLYQGSGGAP 209
E + K +EL + +YQ + A
Sbjct: 575 EAIKAKTEELTQASQKLGEAMYQQAQAAQ 603
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 446 bits (1150), Expect = e-151
Identities = 178/193 (92%), Positives = 188/193 (97%)
Query: 600 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 659
G GERNVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK
Sbjct: 184 GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRK 243
Query: 660 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 719
+KKD++ NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEEL AD
Sbjct: 244 HKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCAD 303
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
LFRGT+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA
Sbjct: 304 LFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 363
Query: 780 VAYGAAVQAAILH 792
VAYGAAVQAAIL
Sbjct: 364 VAYGAAVQAAILS 376
Score = 441 bits (1137), Expect = e-148
Identities = 187/239 (78%), Positives = 199/239 (83%), Gaps = 26/239 (10%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF
Sbjct: 14 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKF 73
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D VQ+DMKHWPF+VV+ GGKP I VEYKGE KTF+PEE+SSMVLTKMKE AE
Sbjct: 74 SDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKMKEIAE------ 127
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLGKTV+NAVITVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAIAYGL
Sbjct: 128 -------AYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 180
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFD 584
DKK G GERNVLIFDLGGGTFDVS+LTIEDGIFE +G+ + LGG FD
Sbjct: 181 DKK-----GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTH-----LGGEDFD 229
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 454 bits (1169), Expect = e-150
Identities = 213/476 (44%), Positives = 277/476 (58%), Gaps = 98/476 (20%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G+ +I N +G RTTPS VAFT ERL+G AK Q NP NTI+ KR +GR+F
Sbjct: 16 VMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF 75
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
++ V + K P++VV DGG ++KV+ K + P+E+S+M+L K+K+ AEAYLG+
Sbjct: 76 DE--VTEEAKRVPYKVVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKDAEAYLGEK 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
V+ AVIT VPAYFND+QRQATKD+G IAGL VLRIINEPTAAA+AYGL
Sbjct: 130 VTEAVIT-------------VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 176
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
DK + +L+FDLGGGTFDVSIL I DG+FE + G T
Sbjct: 177 DK------SKKDEKILVFDLGGGTFDVSILEIGDGVFE--------VLSTAGDTH----- 217
Query: 589 TIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
LGG FD R+
Sbjct: 218 ----------------------LGGDDFD----------------------------QRI 227
Query: 649 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----F 704
++ EFK++ DL+ +K AL+RL+ A E+AK LSS I + +
Sbjct: 228 IDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHL 287
Query: 705 YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 764
++TRA+FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L++DF
Sbjct: 288 EMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDF 347
Query: 765 FNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
F GKE NKS+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGV
Sbjct: 348 F-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGV 398
Score = 246 bits (629), Expect = 2e-71
Identities = 100/203 (49%), Positives = 135/203 (66%), Gaps = 6/203 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+FELT IPPAPR
Sbjct: 399 MTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPR 458
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGIL+V+A +K TGKE ITIT G LS+E+IERMV +AE ED
Sbjct: 459 GVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEED 517
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
+K+K I A+N+ +S + + T+++ DK+ E+ +I ++ + L +
Sbjct: 518 KKRKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEEKEKIEKAVAELKEALKGE---DV 572
Query: 181 EEFEHKQKELEAICNPIITKLYQ 203
EE + K +EL+ + +YQ
Sbjct: 573 EEIKAKTEELQQALQKLAEAMYQ 595
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 412 bits (1062), Expect = e-135
Identities = 216/468 (46%), Positives = 271/468 (57%), Gaps = 111/468 (23%)
Query: 354 GKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412
G ++I N +G R TPS VAF+ + E L+G AAK Q NP NTIF KR IGR
Sbjct: 26 GLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG----- 80
Query: 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNA 472
KI VE G K + PEE+S+M+LTK+KE AEAYLG+ V++A
Sbjct: 81 ---------------SNGLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDA 123
Query: 473 VITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKV 532
VIT VPAYFND+QRQATKD+ IAGLNVLR+INEPTAAA+AYGLDK
Sbjct: 124 VIT-------------VPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG- 169
Query: 533 GSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEE 592
E+ VL++DLGGGTFDVS+L I DG+FE VL GG
Sbjct: 170 ------KEKTVLVYDLGGGTFDVSLLEIGDGVFE------VLA--TGGDNH--------- 206
Query: 593 YFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652
LGG FD +++ + +V F
Sbjct: 207 ------------------LGGDDFDNALI------------------------DYLVMEF 224
Query: 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRAR 712
K K DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D +TRA+
Sbjct: 225 ----KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAK 280
Query: 713 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
FEEL DL T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF GKE K
Sbjct: 281 FEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEK 339
Query: 773 SINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
SINPDEAVA GAA+QAA+L G+ D+LLLDV PLSLGIET GGV
Sbjct: 340 SINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGV 383
Score = 210 bits (536), Expect = 9e-59
Identities = 97/203 (47%), Positives = 133/203 (65%), Gaps = 8/203 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
T +I+RNTTIP K++Q F+T +D Q V I V++GER M DN LG+FEL IPPAPR
Sbjct: 384 RTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPR 443
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNVTA + TGKE ITI G LS E+IERMV DAE A D
Sbjct: 444 GVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALD 502
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
+K + ++ A+N ES ++++ +++ K+S+ E+ +I + D+ + L+ EK
Sbjct: 503 KKFRELVEARNEAESLIYSLEKALKEI---VKVSEEEKEKIEEAITDLEEALE----GEK 555
Query: 181 EEFEHKQKELEAICNPIITKLYQ 203
EE + K +EL+ + + K YQ
Sbjct: 556 EEIKAKIEELQEVTQKLAEKKYQ 578
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 393 bits (1012), Expect = e-130
Identities = 196/443 (44%), Positives = 255/443 (57%), Gaps = 100/443 (22%)
Query: 358 IIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 416
+I N +G RTTPS VAFT D ERL+G AK Q NP NT++ KRLIGR+F+D VQ D
Sbjct: 26 VIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKD 85
Query: 417 MKHWPFEVV--SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVI 474
+K+ P+++V S+G VE G K + P ++ + VL KMKETAEAYLGK V NAVI
Sbjct: 86 IKNVPYKIVKASNG---DAWVEAHG--KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVI 140
Query: 475 TAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 534
T VPAYFNDSQRQATKD+G IAGLNVLR+INEPTAAA+AYGLDKK
Sbjct: 141 T-------------VPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKDDK 187
Query: 535 TAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYF 594
+ ++DLGGGTFD+SIL I+ G+FE + G TF
Sbjct: 188 V-------IAVYDLGGGTFDISILEIQKGVFE--------VKSTNGDTF----------- 221
Query: 595 PLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654
LGG FD N ++ H V+
Sbjct: 222 ----------------LGGEDFD----------------------------NALLRHLVK 237
Query: 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSI 708
EFK++ DLT + AL+RLR A E+AK LSSS Q +I+ + D +
Sbjct: 238 EFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQT--DINLPYITADASGPKHLNMKL 295
Query: 709 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 768
TRA+FE L DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F GK
Sbjct: 296 TRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GK 354
Query: 769 ELNKSINPDEAVAYGAAVQAAIL 791
E +K +NPDEAVA GAA+Q +L
Sbjct: 355 EPSKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 389 bits (1003), Expect = e-128
Identities = 180/444 (40%), Positives = 242/444 (54%), Gaps = 79/444 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G ++++AN+ NR TPS V+F + +RLIG+AAKNQ N NT+ + KRLIGRKF
Sbjct: 15 AVARKGGIDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNFKNTVRNFKRLIGRKF 74
Query: 409 EDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ ++K PF+VV GK IKV Y GE K F PE+V +M+LTK+KE AE
Sbjct: 75 DDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLLTKLKEIAE----- 129
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
L V++ VI+VP+YF D+QR+A D+ IAGLN LR++NE TA A+AYG
Sbjct: 130 --------KALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
+ K DL E RNV D+G + VSI
Sbjct: 182 IYKT---------------DL----------------PEEEKPRNVAFVDIGHSSTQVSI 210
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
F+ L + STA D +LGG DFD
Sbjct: 211 --------------------------VAFNKGKLKV-------LSTAFDRNLGGRDFDEA 237
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 707
+ HF +EFK KYK D+ +N +A RL ACE+ K+ LS++T+A + I+ L E D
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGK 297
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
I R FEEL A L EP+EK+L +A + K IH + +VGGSTRIP V++L+ F G
Sbjct: 298 IKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-G 356
Query: 768 KELNKSINPDEAVAYGAAVQAAIL 791
KEL+ ++N DEAVA G A+Q A+L
Sbjct: 357 KELSTTLNADEAVARGCALQCAML 380
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 354 bits (909), Expect = e-115
Identities = 186/449 (41%), Positives = 253/449 (56%), Gaps = 88/449 (19%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++ V II N +G RTTPS V+FT T L+G+AAK Q A++P NT F KRL
Sbjct: 12 TNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPENTFFATKRL 71
Query: 404 IGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR+F+D VQ MK +++V G I K + P +++S VL K+K+TAE
Sbjct: 72 IGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTN----GKKYSPSQIASFVLKKLKKTAE 127
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLGK V AVIT VPAYFNDSQRQATKD+GT+AGL VLRIINEPTAA
Sbjct: 128 AYLGKRVDEAVIT-------------VPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAA 174
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYG+DK+ +N+ ++DLGGGTFD+SIL IEDG+FE + G T
Sbjct: 175 ALAYGIDKR------KENKNIAVYDLGGGTFDISILNIEDGVFE--------VKATNGDT 220
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
LGG FD +I+
Sbjct: 221 M---------------------------LGGEDFDNAIV--------------------- 232
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
++ F + KYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L
Sbjct: 233 ---QYIIKEFKR----KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPK 285
Query: 703 DFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 762
+ITR FE+L + + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q
Sbjct: 286 HLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQ 345
Query: 763 DFFNGKELNKSINPDEAVAYGAAVQAAIL 791
+ F GK+ +KS+NPDEAVA GAA+Q +IL
Sbjct: 346 EIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 334 bits (859), Expect = e-108
Identities = 156/447 (34%), Positives = 218/447 (48%), Gaps = 116/447 (25%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTER-LIGDAAKNQVAMNPNNTIFDAKR 402
T++L V+Q GK +I N G TPS V+ + L+G AA+ ++ +P+ T KR
Sbjct: 8 TNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDLTAASFKR 67
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
+G +D +Y+ + F EE+SS+VL +KE AE
Sbjct: 68 FMG--------------------TD-------KKYRLGKREFRAEELSSLVLRSLKEDAE 100
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLG+ V+ AVI+ VPAYFND QR+ATK +G +AGL V R+INEPTAA
Sbjct: 101 AYLGEPVTEAVIS-------------VPAYFNDEQRKATKRAGELAGLKVERLINEPTAA 147
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYGL K E L+FDLGGGT
Sbjct: 148 ALAYGLHDK------------------------------------DEETKFLVFDLGGGT 171
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
FDVS+L E F DG+ EV+++AGD +LGGE
Sbjct: 172 FDVSVL---ELF------------------------------DGVMEVRASAGDNYLGGE 198
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
DF + F++ K + L RL A ERAKR LS +A + + EG
Sbjct: 199 DFTRALAEAFLK--KHGLDFEKLDPSE-LARLLRAAERAKRALSDQEEAEMSVR--IEGE 253
Query: 703 DFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 762
+ ++TR FEE+ L +P+E++LRDA++ + I +I+LVGG+TR+P V+KL+
Sbjct: 254 ELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVS 313
Query: 763 DFFNGKELNKSINPDEAVAYGAAVQAA 789
F G+ +NPDE VA GAA+QA
Sbjct: 314 RLF-GRFPLVHLNPDEVVALGAAIQAG 339
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 301 bits (774), Expect = 8e-95
Identities = 138/438 (31%), Positives = 207/438 (47%), Gaps = 72/438 (16%)
Query: 355 KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414
EI+ N++ R TPS VAF ERL G A + A P K L+G+ +D +V
Sbjct: 20 PFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQVYLHLKDLLGKPADDPSVS 79
Query: 415 ADMKHWPF-EVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAV 473
P +V D + + + + EE+ +M+L K+ AE +
Sbjct: 80 LYQSRHPLPYLVVDESRGTVAFKISDGE-EYSVEELVAMILNYAKKLAEEHAK------- 131
Query: 474 ITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 533
V + VITVP YF +QRQA D+ +AGLNVL ++N+ TAAA+ Y LD++
Sbjct: 132 -----EAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYALDRR-- 184
Query: 534 STAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEY 593
FE + + VL +D+G G+ +++
Sbjct: 185 -------------------------------FENNKPQYVLFYDMGAGSTTATVVEFS-- 211
Query: 594 FPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653
+ + EV D LGG +FD R+ +H
Sbjct: 212 ---------------------PVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLA 250
Query: 654 QEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRA 711
+EF+ K+K D+ TN RA+ +L RAK LS++++A + I+SL++ +DF T ITRA
Sbjct: 251 KEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDFKTKITRA 310
Query: 712 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN 771
FEEL ADLF + P++K+L A + I + L+GG+TR+PKVQ+ L + K+L
Sbjct: 311 EFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLG 370
Query: 772 KSINPDEAVAYGAAVQAA 789
K +N DEA A GAA AA
Sbjct: 371 KHLNADEAAAMGAAYYAA 388
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 308 bits (789), Expect = 8e-94
Identities = 187/482 (38%), Positives = 264/482 (54%), Gaps = 96/482 (19%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + K ++ N +G RTTPS VAF +E+L+G AAK Q NP +T + KRL
Sbjct: 37 TYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRL 96
Query: 404 IGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR+FED +Q D+K+ P+++V + G ++ G K + P ++ + VL KMKETAE
Sbjct: 97 IGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ---DGNGKQYSPSQIGAFVLEKMKETAE 153
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
+LG VSNAV+T PAYFND+QRQATKD+GTIAGLNV+R++NEPTAA
Sbjct: 154 NFLGHKVSNAVVTC-------------PAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAA 200
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYG+DK S + ++DLGGGTFD+S+L I G+FE + G T
Sbjct: 201 ALAYGMDKTKDSL-------IAVYDLGGGTFDISVLEIAGGVFE--------VKATNGDT 245
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
LGG FD L + D I E
Sbjct: 246 ---------------------------HLGGEDFD---LALSDYILE------------- 262
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
EF++ DL+ + AL+R+R A E+AK LSS+ + + + +
Sbjct: 263 ------------EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANA 310
Query: 703 D----FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 758
D I+R++FE + L ++ P ++ ++DA ++ +I+D+VLVGG TR+PKV
Sbjct: 311 DGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV 370
Query: 759 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 818
+ ++ FF K+ + +NPDEAVA GAA +L GD V+ L+LLDVTPLSLGIET G
Sbjct: 371 EEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLG 425
Query: 819 GV 820
GV
Sbjct: 426 GV 427
Score = 161 bits (408), Expect = 2e-41
Identities = 79/160 (49%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 61
T +I +NTTIPTK++QTF+T +DNQ V I+V++GER M DN ++G+F+L IPPAPRG
Sbjct: 429 TRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRG 488
Query: 62 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE 121
VPQIEVTFDIDANGI +VTA +K+TGK ITIT + G LSKE IE+M+ D+E++ D
Sbjct: 489 VPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADR 547
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 161
++ ++ +N+ E+ + + + K +SDAE+ +
Sbjct: 548 VKRELVEVRNNAETQLTTAERQLGEWKY---VSDAEKENV 584
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 284 bits (729), Expect = 2e-88
Identities = 124/242 (51%), Positives = 158/242 (65%), Gaps = 33/242 (13%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G+ +I N +G+RTTPS VAFT ERL+G AK Q NP NTIF KR +GRKF
Sbjct: 18 VMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPENTIFSIKRFMGRKF 77
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
++ + + + VV +GG K++++ G K + P+E+S+M+L K+KE AEAYLG+
Sbjct: 78 DEVEEERKVPYKV--VVDEGGNYKVEIDSNG--KDYTPQEISAMILQKLKEDAEAYLGEK 133
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
V+ AVIT VPAYFNDSQRQATKD+G IAGL VLRIINEPTAAA+AYGL
Sbjct: 134 VTEAVIT-------------VPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFDV 585
DKK G +L++DLGGGTFDVSIL I DG+FE +G+ + LGG FD
Sbjct: 181 DKK-------GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTH-----LGGDDFDQ 228
Query: 586 SI 587
I
Sbjct: 229 RI 230
Score = 256 bits (656), Expect = 9e-78
Identities = 99/194 (51%), Positives = 138/194 (71%), Gaps = 5/194 (2%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG+DFD R+++ V+EFK++
Sbjct: 184 GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKEEG 243
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELN 717
DL +K AL+RL+ A E+AK LSS T+ I + + ++TRA+FEEL
Sbjct: 244 IDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEELT 303
Query: 718 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 777
DL T+EPV+++L+DAK+ + I +++LVGGSTRIP VQ+L+++ F GKE NK +NPD
Sbjct: 304 EDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEPNKGVNPD 362
Query: 778 EAVAYGAAVQAAIL 791
E VA GAA+Q +L
Sbjct: 363 EVVAIGAAIQGGVL 376
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 278 bits (714), Expect = 3e-86
Identities = 94/190 (49%), Positives = 129/190 (67%), Gaps = 1/190 (0%)
Query: 600 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 659
R +L+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN + ++ ++FK K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 660 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 719
DL + RALRRL+ A E+AK LSSS +A+I + L G D +TR FEEL
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
L T++ VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PDEA
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPDEA 359
Query: 780 VAYGAAVQAA 789
VA GAA+ AA
Sbjct: 360 VALGAAIYAA 369
Score = 262 bits (673), Expect = 3e-80
Identities = 123/245 (50%), Positives = 155/245 (63%), Gaps = 32/245 (13%)
Query: 353 HGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDA 411
GK EII N +G+RTTPS V F E L+G+AAK Q NP NT+ D KRLIGRKF+D
Sbjct: 18 GGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPENTVGDFKRLIGRKFDDP 77
Query: 412 TVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSN 471
VQ+ K + D G P I V + K + PEEVS+++L K+KE AEAYLG+ V+
Sbjct: 78 LVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLKEDAEAYLGEPVTE 133
Query: 472 AVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 531
AVIT VPAYFND+QR+ATK++ IAGLNV+R+INEPTAAA+AYGLDKK
Sbjct: 134 AVIT-------------VPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 532 VGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE--GSGERNVLIFDLGGGTFDVSILT 589
R +L+FDLGGGTFDVS++ +E G+FE +G N LGG FD
Sbjct: 181 -----DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDN----HLGGDDFD---NA 228
Query: 590 IEEYF 594
+ +Y
Sbjct: 229 LADYL 233
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 268 bits (688), Expect = 3e-79
Identities = 121/224 (54%), Positives = 160/224 (71%), Gaps = 12/224 (5%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E+ +L+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN +V+ V+ F+++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGI 244
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEEL 716
DL+ +K AL+RLR A E+AK LSS SI + F D +TRA+FEEL
Sbjct: 245 DLSQDKMALQRLREAAEKAKIELSSMLTTSINLP--FITADETGPKHLEMELTRAKFEEL 302
Query: 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 776
DL T+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NP
Sbjct: 303 TKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNP 362
Query: 777 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
DEAVA GAA+QA +L G EV+DLLLLDVTPLSLGIET G V
Sbjct: 363 DEAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEV 402
Score = 229 bits (586), Expect = 5e-65
Identities = 115/248 (46%), Positives = 155/248 (62%), Gaps = 31/248 (12%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKR 402
T++ V + GK +I N +G RTTPS V F + +RL+G AK Q N NT++ KR
Sbjct: 12 TNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKR 71
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR+++D + + P+ V G + V+ +G + + P+E+S+M+L K+K+ AE
Sbjct: 72 FIGRRWDDT--EEERSRVPYTCVK-GRDDTVNVQIRG--RNYTPQEISAMILQKLKQDAE 126
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLG+ V+ AVIT VPAYF D+QRQATKD+GTIAGL VLRIINEPTAA
Sbjct: 127 AYLGEPVTQAVIT-------------VPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAA 173
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE--GSGERNVLIFDLGG 580
A+AYGLDK+ E+ +L+FDLGGGTFDVSIL + DG+FE + N LGG
Sbjct: 174 ALAYGLDKQ------DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNN----HLGG 223
Query: 581 GTFDVSIL 588
FD I+
Sbjct: 224 DDFDNCIV 231
Score = 208 bits (531), Expect = 2e-57
Identities = 91/217 (41%), Positives = 129/217 (59%), Gaps = 4/217 (1%)
Query: 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 61
T +I+RNTTIPT ++Q F+T +D Q V I V +GERAM KDN LGKF LT IPPAPRG
Sbjct: 404 TKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRG 463
Query: 62 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE 121
VPQIEV+F+ID NGIL V+A ++ TG+E I ITN G LS +IERM +AEKY ED
Sbjct: 464 VPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDR 522
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
++K +I KN +S ++ +ST+++ + IS+ + + K ++ + E
Sbjct: 523 RRKQLIELKNQADSLLYSYESTLKEN--GELISEELKQRAEQKVE-QLEAALTDPNISLE 579
Query: 182 EFEHKQKELEAICNPIITKLYQGSGGAPVQPFTTTQV 218
E + + +E + I ++YQ G T
Sbjct: 580 ELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSD 616
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 261 bits (670), Expect = 5e-77
Identities = 122/219 (55%), Positives = 162/219 (73%), Gaps = 9/219 (4%)
Query: 606 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 665
+L+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++VN ++EFK+K DL+
Sbjct: 189 ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLS 248
Query: 666 TNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELNADLF 721
+++AL+RL A E+AK LS+ TQ I I + G ++TRA+FEEL +DL
Sbjct: 249 KDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLI 308
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA
Sbjct: 309 NRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVA 367
Query: 782 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GAAVQA +L G EV+D+LLLDVTPLSLG+ET GGV
Sbjct: 368 IGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGV 402
Score = 239 bits (612), Expect = 6e-69
Identities = 124/256 (48%), Positives = 160/256 (62%), Gaps = 34/256 (13%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKR 402
T+++ V + GK +I N +G RTTPS VA+T + L+G AK Q +NP NT + KR
Sbjct: 12 TNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKR 71
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGRKF + + + K ++V +D IK+E K F PEE+S+ VL K+ E A
Sbjct: 72 FIGRKFSE--ISEEAKQVSYKVKTDS-NGNIKIECPALNKDFSPEEISAQVLRKLVEDA- 127
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
+ YLG+TV+ AVITVPAYFNDSQRQATKD+G IAGL VLRIINEPTAA
Sbjct: 128 ------------SKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 175
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLG 579
++AYGLDKK T +L+FDLGGGTFDVSIL + DG+FE SG+ + LG
Sbjct: 176 SLAYGLDKKNNET-------ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTH-----LG 223
Query: 580 GGTFDVSILT--IEEY 593
G FD I+ I+E+
Sbjct: 224 GDDFDKKIVNWLIKEF 239
Score = 204 bits (521), Expect = 2e-56
Identities = 98/206 (47%), Positives = 132/206 (64%), Gaps = 8/206 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT +I RNTTIPTK+++ F+T DNQ V I V +GER + KDN LG F L IPPAPR
Sbjct: 403 MTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPR 462
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGIL+VTA +K TGKE ITI L K+++ERMV +AEK AED
Sbjct: 463 GVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAED 521
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAE 179
++++ I KN ES C+ + +++ LKDKIS+ ++ +I ++IK L A Q
Sbjct: 522 KEKREKIDLKNQAESLCYQAEKQLKE--LKDKISEEKKEKI----ENLIKKLRQALQNDN 575
Query: 180 KEEFEHKQKELEAICNPIITKLYQGS 205
E + +EL+ I ++Y +
Sbjct: 576 YESIKSLLEELQKALMEIGKEVYSST 601
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 248 bits (636), Expect = 6e-72
Identities = 117/223 (52%), Positives = 157/223 (70%), Gaps = 13/223 (5%)
Query: 604 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 663
+ + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R++N+ + EFK++ D
Sbjct: 226 KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGID 285
Query: 664 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELN 717
L +K AL+RLR A E AK LSS TQ EI+ F D ++RA+ EEL
Sbjct: 286 LKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITADQSGPKHLQIKLSRAKLEELT 343
Query: 718 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 777
DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + ++ F GKE +K +NPD
Sbjct: 344 HDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPD 402
Query: 778 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
EAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV
Sbjct: 403 EAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGV 441
Score = 231 bits (591), Expect = 1e-65
Identities = 115/241 (47%), Positives = 151/241 (62%), Gaps = 30/241 (12%)
Query: 357 EIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQA 415
++I N +G RTTPS VAFT+ +RL+G AK Q NP NT+F KRLIGR++++ +
Sbjct: 64 KVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKK 123
Query: 416 DMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVI 474
+ K P+++V + G I+ + K + P ++ + VL KMKETAE+YLG+ V AVI
Sbjct: 124 EQKILPYKIVRASNGDAWIE----AQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVI 179
Query: 475 TAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 534
T VPAYFNDSQRQATKD+G IAGL+VLRIINEPTAAA+A+G+DK G
Sbjct: 180 T-------------VPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGK 226
Query: 535 TAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT--IEE 592
T + ++DLGGGTFD+SIL I G+FE LGG FD IL I E
Sbjct: 227 T-------IAVYDLGGGTFDISILEILGGVFEVKATNGNT--SLGGEDFDQRILNYLIAE 277
Query: 593 Y 593
+
Sbjct: 278 F 278
Score = 217 bits (553), Expect = 2e-60
Identities = 98/205 (47%), Positives = 143/205 (69%), Gaps = 6/205 (2%)
Query: 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 61
T LI RNTTIPTK++Q F+T +DNQ V I+V++GER M DN LLG+F+L IPPAPRG
Sbjct: 443 TRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRG 502
Query: 62 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE 121
VPQIEVTFD+DANGI+N++A++KSTGK+ +ITI + G LS E+IE+MV +AE+YK +DE
Sbjct: 503 VPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDE 561
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
K+K ++ AKN E+ ++++ + D LKDKISDA++ ++ K + L + + +
Sbjct: 562 KKKELVDAKNEAETLIYSVEKQLSD--LKDKISDADKDELKQKITKLRSTLSSEDV---D 616
Query: 182 EFEHKQKELEAICNPIITKLYQGSG 206
+ K K+L+ I + Y+
Sbjct: 617 SIKDKTKQLQEASWKISQQAYKQGN 641
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 248 bits (636), Expect = 9e-72
Identities = 108/224 (48%), Positives = 150/224 (66%), Gaps = 9/224 (4%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
S + VL+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R+V+ ++F K
Sbjct: 184 SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKE 243
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEEL 716
DL +++AL+RL A E+AK LS + I + + D T + R +FE L
Sbjct: 244 GIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303
Query: 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 776
DL + PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NP
Sbjct: 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362
Query: 777 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
DE VA GAA+QA IL G E++DLLLLDVTPLSLG+ET GGV
Sbjct: 363 DEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGV 402
Score = 240 bits (615), Expect = 7e-69
Identities = 110/248 (44%), Positives = 155/248 (62%), Gaps = 32/248 (12%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKR 402
T+++ V + GK +IAN +G RTTPS V FT D E L+G A+ Q+ +NP NT ++ KR
Sbjct: 12 TNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKR 71
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR++++ + K P+ + + + ++++ + F PEE+S+M+L K+ + A
Sbjct: 72 FIGRRYDELD--PESKRVPYTIRRNE-QGNVRIKCPRLEREFAPEELSAMILRKLADDAS 128
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
YLG+ V+ AVIT VPAYFNDSQRQAT+D+G IAGL V RI+NEPTAA
Sbjct: 129 RYLGEPVTGAVIT-------------VPAYFNDSQRQATRDAGRIAGLEVERILNEPTAA 175
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLG 579
A+AYGLD+ S + VL+FDLGGGTFDVS+L + +G+FE SG+ LG
Sbjct: 176 ALAYGLDR-------SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQ-----LG 223
Query: 580 GGTFDVSI 587
G FD I
Sbjct: 224 GNDFDKRI 231
Score = 167 bits (424), Expect = 3e-43
Identities = 72/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
M LI RNTTIP +++ F+T +NQ V I V++GER M DN LG+F+L+ IPPAPR
Sbjct: 403 MKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPR 462
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQ++V FDIDANGIL V+A +++TG+E +TI LS++++ RM+ +AE ED
Sbjct: 463 GVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADED 521
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ--ILDKCNDVIKWLDANQLA 178
+++ I +N + + + D L+ AER + + DV L+ +
Sbjct: 522 RRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDR 581
Query: 179 E 179
E
Sbjct: 582 E 582
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 242 bits (620), Expect = 1e-69
Identities = 119/219 (54%), Positives = 154/219 (70%), Gaps = 9/219 (4%)
Query: 606 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 665
+L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FK+ DL
Sbjct: 226 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLL 285
Query: 666 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLF 721
+K+AL+RL A E+AK LSS TQ SI + + D T++TRA+FEEL +DL
Sbjct: 286 KDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLL 345
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA
Sbjct: 346 DRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKK-LTGKDPNVTVNPDEVVA 404
Query: 782 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GAAVQA +L G EV D++LLDVTPLSLG+ET GGV
Sbjct: 405 LGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGV 439
Score = 218 bits (557), Expect = 6e-61
Identities = 112/239 (46%), Positives = 143/239 (59%), Gaps = 32/239 (13%)
Query: 354 GKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412
GK I+ N +G RTTPS VA+T +RL+G AK Q +NP NT F KR IGRK +
Sbjct: 59 GKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116
Query: 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNA 472
V + K + VV D +K++ K F EE+S+ VL K+ + A
Sbjct: 117 VDEESKQVSYRVVRDENG-NVKLDCPAIGKQFAAEEISAQVLRKLVDDA----------- 164
Query: 473 VITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKV 532
+ +L V+ AVITVPAYFNDSQR ATKD+G IAGL VLRIINEPTAA++AYG +KK
Sbjct: 165 --SKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKS 222
Query: 533 GSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFDVSIL 588
T +L+FDLGGGTFDVS+L + DG+FE SG+ + LGG FD I+
Sbjct: 223 NET-------ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH-----LGGDDFDKRIV 269
Score = 178 bits (454), Expect = 3e-47
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 8/213 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT +I RNTT+PT +++ F+T +D Q V I V +GER +DN LG F L IPPAPR
Sbjct: 440 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPR 499
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEV FDIDANGIL+V+A +K TGK+ ITIT L K+++ERMV +AEK+ ED
Sbjct: 500 GVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKED 558
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAE- 179
++++ + KN +S + + +++ L DK+ + ++ K ++ + + +
Sbjct: 559 KEKRDAVDTKNQADSVVYQTEKQLKE--LGDKVPADVKEKVEAKLKELKDAIASGSTQKM 616
Query: 180 KEEFEHKQKELEAICNPIITKLYQGSGGAPVQP 212
K+ +E+ I LY G P
Sbjct: 617 KDAMAALNQEVMQIGQ----SLYNQPGAGGAGP 645
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 233 bits (596), Expect = 1e-66
Identities = 89/218 (40%), Positives = 137/218 (62%), Gaps = 13/218 (5%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E + ++DLGGGTFD+SIL + G+FEV +T GD+ LGG+DFD+ + + ++ +
Sbjct: 200 EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE--QAGLSP 257
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
L + R L A AK LS + + + +L++G ITR +F L A L +
Sbjct: 258 RLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQG-----EITREQFNALIAPLVK 309
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
T+ ++LRDA ++ ++ ++V+VGGSTR+P V++ + +FF G+ SI+PD+ VA
Sbjct: 310 RTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAI 368
Query: 783 GAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GAA+QA IL G+K + D+LLLDV PLSLG+ET GG+
Sbjct: 369 GAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Score = 207 bits (529), Expect = 2e-57
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 27/216 (12%)
Query: 352 QHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDA 411
+ G+ E++ ++QG PS V + + +G A+ A +P NTI KR +GR D
Sbjct: 37 RSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD- 95
Query: 412 TVQADMKHWPFE-VVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVS 470
+Q H P++ V S+ G P I+ K+ P EVS+ +L +++ AE LG +
Sbjct: 96 -IQQRYPHLPYQFVASENGMPLIRT--AQGLKS--PVEVSAEILKALRQRAEETLGGELD 150
Query: 471 NAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDK 530
AVIT VPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAAIAYGLD
Sbjct: 151 GAVIT-------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDS 197
Query: 531 KVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
G E + ++DLGGGTFD+SIL + G+FE
Sbjct: 198 --GQ-----EGVIAVYDLGGGTFDISILRLSKGVFE 226
Score = 138 bits (349), Expect = 6e-34
Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 17/165 (10%)
Query: 4 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 63
+I RNTTIP + Q FTT+ D Q + I V +GER + D L +FEL IPP G
Sbjct: 408 IIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAA 467
Query: 64 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED--- 120
+I VTF +DA+G+L+VTA+EKSTG E I + G L+ ++I RM+ D+ + ED
Sbjct: 468 RIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQA 526
Query: 121 ----EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 161
E++ + A+ LE+ + D L +S AER I
Sbjct: 527 RALAEQK---VEAERVLEAL---QAALAADGDL---LSAAERAAI 562
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 222 bits (566), Expect = 5e-65
Identities = 142/445 (31%), Positives = 222/445 (49%), Gaps = 79/445 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G +E IAN+ +R TP+ ++ R IG+AAK+Q+ N NTI K+L GR F
Sbjct: 15 AVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSF 74
Query: 409 EDATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ + P+E+ G +KV Y E + F E+V+ M+L K+KET+E L K
Sbjct: 75 DDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKK 134
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V++ VI+ +P++F D++R++ + +AGLN LR++NE TA A+AYG
Sbjct: 135 PVADCVIS-------------IPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYG 181
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
+ K+ RNV+ D+G + VS+ G+ VL TFD
Sbjct: 182 IYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFN------KGKLKVL-----ATTFD--- 227
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
P LGG FD ++
Sbjct: 228 -------PY--------------LGGRNFDEAL--------------------------- 239
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYT 706
V++F EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D +
Sbjct: 240 -VDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 707 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 766
+ RA+FE+L A L P++ + A + + I+ I +VGG+TRIP V++ + FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 767 GKELNKSINPDEAVAYGAAVQAAIL 791
K+++ ++N DEAVA G A+Q AIL
Sbjct: 359 -KDISTTLNADEAVARGCALQCAIL 382
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 219 bits (558), Expect = 6e-64
Identities = 143/444 (32%), Positives = 216/444 (48%), Gaps = 79/444 (17%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409
V + G +E IAN+ +R TP+ ++F R IG AAK+QV N NT+ KR GR F
Sbjct: 16 VARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFS 75
Query: 410 DATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D VQA+ +++V G IKV Y E + F E+V++M+LTK+KETAE
Sbjct: 76 DPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLLTKLKETAE------ 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
+ L K V + V++VP ++ D++R++ D+ IAGLN LR++NE TA A+AYG+
Sbjct: 130 -------SALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGI 182
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
K+ RNV+ D+G + VS+ G+ VL FD +
Sbjct: 183 YKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFN------KGKLKVL-----ATAFDTT-- 229
Query: 589 TIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
LGG FD E N
Sbjct: 230 ----------------------LGGRKFD------------------------EVLVNYF 243
Query: 649 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTS 707
F +++K D+ + RAL RL CE+ K+ +S+ ++ + I+ +D +
Sbjct: 244 CEEFGKKYKL----DIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGT 299
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
+ R +F E+ DL P+ L AK+ K I+ + +VGG+TRIP V++ + FF G
Sbjct: 300 MNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-G 358
Query: 768 KELNKSINPDEAVAYGAAVQAAIL 791
KE++ ++N DEAVA G A+Q AIL
Sbjct: 359 KEVSTTLNADEAVARGCALQCAIL 382
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 220 bits (562), Expect = 5e-62
Identities = 95/221 (42%), Positives = 130/221 (58%), Gaps = 15/221 (6%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ + K+
Sbjct: 180 EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI-------LKQ 232
Query: 663 ---DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 719
N R L A AK L + S+E+D +G DF +TR FE L
Sbjct: 233 LGISADLNPEDQRLLLQAARAAKEAL--TDAESVEVDFTLDGKDFKGKLTRDEFEALIQP 290
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
L + T+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+
Sbjct: 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQV 349
Query: 780 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
VA GAA+QA +L G++ DLLLLDVTPLSLGIET GG+
Sbjct: 350 VALGAAIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGL 388
Score = 191 bits (488), Expect = 5e-52
Identities = 98/245 (40%), Positives = 133/245 (54%), Gaps = 35/245 (14%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVAMNPNNTIFDAKR 402
T++L + G E++ + +G PS V + D +G A A +P NTI KR
Sbjct: 9 TNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKR 68
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
L+GR ED + + P+ V DG +++ T P EVS+ +L K+K+ AE
Sbjct: 69 LMGRSIEDIKTFSIL---PYRFV-DGPGEMVRLRTVQGTVT--PVEVSAEILKKLKQRAE 122
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
LG + AVIT VPAYF+D+QRQATKD+ +AGLNVLR++NEPTAA
Sbjct: 123 ESLGGDLVGAVIT-------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAA 169
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLG 579
A+AYGLDK + E ++DLGGGTFDVSIL + G+FE G+ LG
Sbjct: 170 AVAYGLDK-------ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSA-----LG 217
Query: 580 GGTFD 584
G FD
Sbjct: 218 GDDFD 222
Score = 141 bits (358), Expect = 4e-35
Identities = 64/162 (39%), Positives = 90/162 (55%), Gaps = 11/162 (6%)
Query: 4 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 63
+I RNT IP + Q FTTY D Q ++I V +GER + +D L +FEL IPP G
Sbjct: 392 IIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAA 451
Query: 64 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED--- 120
+I VTF +DA+G+L V+A E+STG E I + G LS E+IERM+ D+ K+ ED
Sbjct: 452 RIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYA 510
Query: 121 -EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 161
+ + A+ LE+ + D L +S+ ER I
Sbjct: 511 RALAEQKVEAERILEAL---QAALAADGDL---LSEDERAAI 546
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 208 bits (531), Expect = 3e-60
Identities = 98/244 (40%), Positives = 130/244 (53%), Gaps = 34/244 (13%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++L GKV+I+ ++ G PS V + D +G A +P NTI KRL
Sbjct: 10 TNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTISSVKRL 69
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
+G+ ED ++ + P +GG + T P EVS+ +L +KE AE
Sbjct: 70 MGKSIED--IKKSFPYLPILEGKNGGIILFHTQ----QGTVTPVEVSAEILKALKERAEK 123
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
LG + AVIT VPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAA
Sbjct: 124 SLGGEIKGAVIT-------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAA 170
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGG 580
+AYGLDKK E ++DLGGGTFDVSIL + G+FE G+ LGG
Sbjct: 171 LAYGLDKKK-------EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSA-----LGG 218
Query: 581 GTFD 584
FD
Sbjct: 219 DDFD 222
Score = 187 bits (478), Expect = 6e-53
Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD + + +KY
Sbjct: 178 KKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLL----KKY 233
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
+ L +AK LS + + +E+ G DF +ITR FE+L L
Sbjct: 234 GLKSLISDEDQAELLLIARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKLIDPL 287
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 780
+ T+ +++LRDA + I ++LVGGSTRIP VQ+ + FF K L INPDE V
Sbjct: 288 VKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVV 346
Query: 781 AYGAAVQA 788
A GAA+QA
Sbjct: 347 AIGAALQA 354
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 206 bits (525), Expect = 2e-59
Identities = 114/435 (26%), Positives = 193/435 (44%), Gaps = 78/435 (17%)
Query: 356 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQA 415
++I+ N+ NR+TPS V F R +G+ KN+ N NT+ + KR+IG + +
Sbjct: 20 IDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQ 79
Query: 416 DMKH-WPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVI 474
+ KH V D K +V + GE F ++++M + K+K+T + +++ I
Sbjct: 80 ESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCI 139
Query: 475 TAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 534
VP ++ + QR D+ IAGLN +RI+N+ TAA ++YG+ K
Sbjct: 140 A-------------VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLP 186
Query: 535 TAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYF 594
R V D+G ++ SI+ + G + + G D
Sbjct: 187 EGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLK-----------VLGTACDKH-------- 227
Query: 595 PLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654
GG FD++I H E ++ ++
Sbjct: 228 ----------------FGGRDFDLAI---------------TEHFADEFKTKYKID--IR 254
Query: 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFE 714
E + Y + L TA E+ K+ LS++T A ++S+ VD + ++R E
Sbjct: 255 ENPKAYNRIL-----------TAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELE 303
Query: 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 774
EL L EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++
Sbjct: 304 ELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTL 362
Query: 775 NPDEAVAYGAAVQAA 789
N DEA+A GAA A
Sbjct: 363 NQDEAIAKGAAFICA 377
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 203 bits (518), Expect = 3e-58
Identities = 85/188 (45%), Positives = 126/188 (67%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
G+ VL++ LGG + DV+IL + G++ V +T+ D +LGGE F + + EFKRK+K
Sbjct: 188 GKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWK 247
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
+D+ N RA+ +L A E AK+ LS+ A+ ++SL+EG+DF S++RARFE L + LF
Sbjct: 248 QDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLF 307
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
+EP+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A
Sbjct: 308 PKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIA 367
Query: 782 YGAAVQAA 789
GAA QA
Sbjct: 368 IGAAKQAG 375
Score = 184 bits (468), Expect = 2e-51
Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
TSA V++ G+ +++AND G+R TP+ VAFTDTE ++G AAK N NTI K++
Sbjct: 10 TSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQI 69
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
+GR + D Q + +++ G+PK ++ + + K P+EV+ ++ KMKE A+
Sbjct: 70 LGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQ- 128
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
+ LG + VITVP YF++ Q+ A +++ AG NVLRII+EP+AAA
Sbjct: 129 ------------SALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAA 176
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
+AYG+ G + +G+ VL++ LGG + DV+IL + G++
Sbjct: 177 LAYGI----GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYR 215
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 195 bits (497), Expect = 7e-55
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 22/220 (10%)
Query: 349 GVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGR 406
GV+Q G+ +II ++ G ++ PS VAFT L+G A Q NP NTI+DAKR IG+
Sbjct: 35 GVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNPQNTIYDAKRFIGK 94
Query: 407 KFEDATVQADMKHWPFEVVSD-GGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYL 465
F ++ + + F+V + E KT PEE+ S ++ K+++ AE YL
Sbjct: 95 IFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSRLILKLRKMAEKYL 154
Query: 466 GKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 525
G V AVI+ VPA F++ QR AT + +AGL VLR+INEPTAAA+A
Sbjct: 155 GTPVGKAVIS-------------VPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 526 YGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF 565
YGL KK NVL+ DLGGGT DVS+L + G+F
Sbjct: 202 YGLHKK------QDVFNVLVVDLGGGTLDVSLLNKQGGMF 235
Score = 180 bits (458), Expect = 1e-49
Identities = 86/194 (44%), Positives = 124/194 (63%), Gaps = 7/194 (3%)
Query: 605 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 664
NVL+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R++ + Q+ KY K
Sbjct: 212 NVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVP 271
Query: 665 TTNKRALRRLRTACERAK--RTLSSSTQASIEIDSLFEG---VDFYTSITRARFEELNAD 719
NK ++RLR A E AK TL ST S+ + L EG V F +TR FE LN D
Sbjct: 272 D-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNED 330
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
LF+ + P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ A
Sbjct: 331 LFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELA 389
Query: 780 VAYGAAVQAAILHG 793
V G A+QA I+ G
Sbjct: 390 VVTGVAIQAGIIGG 403
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 180 bits (458), Expect = 8e-50
Identities = 76/196 (38%), Positives = 118/196 (60%), Gaps = 7/196 (3%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
+ +RNV++ D GG DVS++ + G++ + +TA D LGG+ D+ +V HF +EF +K
Sbjct: 191 ALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFTKKT 250
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
K D TN RAL +LR E K+TLS+ST A+ ++SL EG+DF++SI R RFE L + +
Sbjct: 251 KTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLASAV 310
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKS 773
FR V ++ A +D I +++LVGG+ PK+ L F ++K+
Sbjct: 311 FRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITVSKA 370
Query: 774 INPDEAVAYGAAVQAA 789
++P E VA G A+QA+
Sbjct: 371 LDPSELVARGCAIQAS 386
Score = 147 bits (373), Expect = 2e-38
Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 354 GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413
GK ++IAN+ G R PS +++ + G+ AK Q+ N NTI + + L+G+ F + V
Sbjct: 20 GKADVIANEDGERQIPSAISYHGEQEYHGNQAKAQLIRNAKNTITNFRDLLGKPFSEIDV 79
Query: 414 QADMKHWPFEVVSDGGK--PKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSN 471
A P V + K E + EV+ L ++KE AE +LGK V+
Sbjct: 80 SAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAG 139
Query: 472 AVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 531
AV++ VP +F+D Q +A + AGL VL++I EP AA +AY +
Sbjct: 140 AVLS-------------VPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLAYDAGEP 186
Query: 532 VGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLI----FDLGGGTFD 584
A +RNV++ D GG DVS++ + G++ +L LGG T D
Sbjct: 187 TEDEA--LDRNVVVADFGGTRTDVSVIAVRGGLY------TILATAHDPGLGGDTLD 235
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 177 bits (451), Expect = 3e-47
Identities = 133/481 (27%), Positives = 204/481 (42%), Gaps = 131/481 (27%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++L + + KV++I + P+ + FT IG+ N + KRL
Sbjct: 29 TNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGN----------NKGLRSIKRL 78
Query: 404 IGRKFED----ATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKE 459
G+ ++ + + +K + + + + K+ K E+++ + +K
Sbjct: 79 FGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIYLKN 131
Query: 460 TAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 519
AE L ++ AVIT VPA+FND+ R + IAG VLR+I EP
Sbjct: 132 QAEEQLKTNITKAVIT-------------VPAHFNDAARGEVMLAAKIAGFEVLRLIAEP 178
Query: 520 TAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLG 579
TAAA AYGL+K + G + L++DLG
Sbjct: 179 TAAAYAYGLNKN-----------------------------QKGCY--------LVYDLG 201
Query: 580 GGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 639
GGTFDVSIL I+E GIF+V +T GD L
Sbjct: 202 GGTFDVSILNIQE---------------------------------GIFQVIATNGDNML 228
Query: 640 GGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLF 699
GG D D + + +F DL + L+ ++AK TL+ + S D++
Sbjct: 229 GGNDIDVVITQYLCNKF------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNI- 275
Query: 700 EGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 759
SI + E+L L T+ ++ L A I ++LVGG+TRIP ++
Sbjct: 276 -------SINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKD 326
Query: 760 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 819
L F L+ I+PD+AV +GAA+QA L + LL+DV PLSLG+E GG
Sbjct: 327 ELYKAFKVDILS-DIDPDKAVVWGAALQAENL----IAPHTNSLLIDVVPLSLGMELYGG 381
Query: 820 V 820
+
Sbjct: 382 I 382
Score = 110 bits (276), Expect = 5e-25
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%)
Query: 4 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 63
+I RNT IP + FTTY+DNQ G+ + +GER M D L +FEL +PP G
Sbjct: 386 IIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445
Query: 64 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQ 123
+ EVTF IDA+GIL+V+A EK + + I + + G + K +I+ M+ +A K D
Sbjct: 446 RAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTT 504
Query: 124 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI---LDKCNDVIKWLDANQLAEK 180
+ + A E+ FN++ + +L +S++E + I LD + + D +
Sbjct: 505 RLLQEAVIEAEALIFNIERAI--AELTTLLSESEISIINSLLDNIKEAVHARDIILINNS 562
Query: 181 -EEFEHK-QKELEAICNPIITKLYQG 204
+EF+ K +K ++ N II L +G
Sbjct: 563 IKEFKSKIKKSMDTKLNIIINDLLKG 588
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 155 bits (393), Expect = 3e-41
Identities = 87/238 (36%), Positives = 130/238 (54%), Gaps = 20/238 (8%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409
V + G +E +AN+ +R TPS ++F R IG AAKNQ + NNT+ + KR GR F
Sbjct: 16 VARAGGIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSNFKRFHGRAFN 75
Query: 410 DATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D VQ + ++ +++V G +KV Y GE F E++++M+LTK+KETAE
Sbjct: 76 DPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLLTKLKETAE------ 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
L K V++ VI+VP++F D++R++ D+ I GLN LR++N+ TA A+ YG+
Sbjct: 130 -------NNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGI 182
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFD--LGGGTFD 584
K+ + R V+ D+G F VS G + G FD LGG FD
Sbjct: 183 YKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGT----AFDPFLGGKNFD 236
Score = 141 bits (357), Expect = 2e-36
Identities = 75/189 (39%), Positives = 107/189 (56%), Gaps = 2/189 (1%)
Query: 604 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 663
R V+ D+G F VS G +V TA D LGG++FD ++V HF EFK KYK D
Sbjct: 195 RIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLD 254
Query: 664 LTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+ RAL RL CE+ K+ +SS ST + I+ D + R++FEEL ADL +
Sbjct: 255 AKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQ 314
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
P+ L + + + +VGG+TRIP V++ + FF GK+++ ++N DEAVA
Sbjct: 315 RIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVAR 373
Query: 783 GAAVQAAIL 791
G A+Q AIL
Sbjct: 374 GCALQCAIL 382
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 89.5 bits (223), Expect = 7e-19
Identities = 103/505 (20%), Positives = 156/505 (30%), Gaps = 159/505 (31%)
Query: 345 SALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLI 404
SA+ V + G+ ++ + G+ T PS + F E + L
Sbjct: 10 SAV-AVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREV-----------------LF 51
Query: 405 GRKFEDATVQADMKHWPFEVVSDG----------GKPKIKVEYKGEAKTFFPEEVSSMVL 454
GR A ++ +G G + E + + E++ + L
Sbjct: 52 GRAAIAAYLEGPG---------EGRLMRSLKSFLGSSLFR-ETRIFGRRLTFEDLVARFL 101
Query: 455 TKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQ----RQATKDSGTI--- 507
++K+ AEA LG + VI G+ P +F QA
Sbjct: 102 AELKQRAEAALGAEIDRVVI----GR---------PVHFVGDDEAADAQAEARLRAAARA 148
Query: 508 AGLNVLRIINEPTAAAIAYG--LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF 565
AG + EP AAA+ Y L + E VL+ D+GGGT D S+
Sbjct: 149 AGFKDVEFQYEPIAAALDYEQRLTR---------EELVLVVDIGGGTSDFSL-------- 191
Query: 566 EGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIED 625
LG + + L G +GG FD +
Sbjct: 192 ----------VRLGPSRRGRADRRAD---ILAHSGVR--------IGGTDFDRRL--SLH 228
Query: 626 GIFEVKSTAGDTHLG----GEDFDNR---------------MVNHF----VQEFKRKYKK 662
+ LG +N R+ +
Sbjct: 229 AVMP--------LLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELRELAR 280
Query: 663 DLTTNKRALRRLRT------------ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 710
D L RL T A E AK LSS + I++D F V +TR
Sbjct: 281 D-AVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLD--FVEVGLEAPVTR 337
Query: 711 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF----- 765
A FE A V+++L A + I + L GGS+ +P V++ F
Sbjct: 338 AEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARI 397
Query: 766 -NGKELNKSINPDEAVAYGAAVQAA 789
G +VA G A+ AA
Sbjct: 398 VEGDAF-------GSVASGLALAAA 415
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 62.3 bits (152), Expect = 5e-10
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 442 KTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNA--VITVPAYFNDSQRQ 499
+V + L + E A L KT N TA + V+TVPA ++D+ +Q
Sbjct: 104 PGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTA------LDIEWVLTVPAIWSDAAKQ 157
Query: 500 ATKDSGTIAGLNV-------LRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGT 552
A +++ AGL L I+ EP AAA+ + G+ L+ D GGGT
Sbjct: 158 AMREAAIKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDG-FLVCDAGGGT 216
Query: 553 FDVSILTIEDG-------IFEGSGERNVLIFDLGGGTF 583
D+++ + + GSG L G TF
Sbjct: 217 VDLTVYEVTSVEPLRLKELAAGSGG-------LCGSTF 247
Score = 43.4 bits (103), Expect = 4e-04
Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 34/205 (16%)
Query: 605 NVLIFDLGGGTFDVSILTIEDGI-FEVK-STAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
L+ D GGGT D+++ + +K AG L G F +R F + K + +
Sbjct: 206 GFLVCDAGGGTVDLTVYEVTSVEPLRLKELAAGSGGLCGSTFVDR---AFEELLKERLGE 262
Query: 663 DLTT----NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN- 717
+ L E KR+ + I S N
Sbjct: 263 LFYELPSKSPALWLILMRFFETIKRSFGGTDN-DTNIVLPGS---LALSKKDPERGIRNG 318
Query: 718 ---------ADLFRGTMEPVEKSLRDAKMDKAQIHD----IVLVGGSTRIPKVQKLLQDF 764
LF +E + + + ++++A+ D I LVGG P ++ L++
Sbjct: 319 ELKISGEDMKSLFDPVIEEIIDLIEE-QLEQAEKGDKVKYIFLVGGFGESPYLRSRLKER 377
Query: 765 FNGKELNKSI----NPDEAVAYGAA 785
F + +P AV GA
Sbjct: 378 F--SSRGIRVLRPPDPQLAVVRGAV 400
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 51.6 bits (124), Expect = 9e-07
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ +R+A K+S AG + +I EP AAAI GL V GS ++
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL--PVEEPTGS-----MV 154
Query: 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
D+GGGT +V+++++ GI R +GG FD +I+
Sbjct: 155 VDIGGGTTEVAVISL-GGIVVSRSIR------VGGDEFDEAII 190
Score = 31.6 bits (72), Expect = 1.6
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 607 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 666
++ D+GGGT +V+++++ GI +S +GG++FD ++N+ +R Y
Sbjct: 153 MVVDIGGGTTEVAVISL-GGIVVSRS----IRVGGDEFDEAIINY----IRRTYN----- 198
Query: 667 NKRALRRLRTACERAKRTLSSSTQASIEIDSL-FEGVDFYTSITRARFEELNADLFRGTM 725
L +TA ER K + S+ + E + G D T + R E + ++
Sbjct: 199 ---LLIGEQTA-ERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPR-TIEITSVEVREALQ 253
Query: 726 EPV-----------EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 763
EPV EK+ + D + IVL GG + + KLL
Sbjct: 254 EPVNQIVEAVKRTLEKTPPELAADIVE-RGIVLTGGGALLRNLDKLLSK 301
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 49.3 bits (119), Expect = 4e-06
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ + +R+A D+ AG + +I EP AAAI GLD + G+ ++
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD--IFEPKGN-----MV 146
Query: 546 FDLGGGTFDVSIL 558
D+GGGT +++++
Sbjct: 147 VDIGGGTTEIAVI 159
Score = 46.7 bits (112), Expect = 3e-05
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 40/195 (20%)
Query: 606 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 665
++ D+GGGT +++++++ GI KS +GG+DFD ++ + +RKY
Sbjct: 144 NMVVDIGGGTTEIAVISL-GGIVVSKS----IRVGGDDFDEAIIRY----VRRKYN---- 190
Query: 666 TNKRALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
L RTA E K + S+ E +G D T + R E+ ++
Sbjct: 191 --------LLIGERTA-EEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEV 239
Query: 722 RGTM-EPVEKSLRDAK--MDK------AQIHD--IVLVGGSTRIPKVQKLLQDFFNGKEL 770
R + EP+++ + K ++K A I D IVL GG + + +L+ + G +
Sbjct: 240 REALKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPV 298
Query: 771 NKSINPDEAVAYGAA 785
+ +P VA GA
Sbjct: 299 RVAEDPLTCVAKGAG 313
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 48.0 bits (114), Expect = 4e-06
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 424 VVSDGGKPKIKVEYKGEAKTFFPE---EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGK 480
V G+ + + L ++ + A L + IT G
Sbjct: 14 VADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGV 73
Query: 481 TVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGE 540
N + + + G + ++N+ AAA+A GL K E
Sbjct: 74 PKENREVIILPNLLL---IPLALALEDLGGVPVAVVNDAVAAALAEGLFGK-------EE 123
Query: 541 RNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDL 578
VL+ DLG GT ++I +EDG + I +
Sbjct: 124 DTVLVVDLGTGTTGIAI--VEDGKGGVGAAGELGIAEA 159
Score = 29.1 bits (65), Expect = 6.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 600 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 634
G E VL+ DLG GT ++I +EDG V +
Sbjct: 120 GKEEDTVLVVDLGTGTTGIAI--VEDGKGGVGAAG 152
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 50.0 bits (120), Expect = 4e-06
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 718 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 773 SINPDEAVAYGAAVQAAILHGDKS 796
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 46.8 bits (112), Expect = 3e-05
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 483 SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERN 542
VI VP+ + +R+A K++ AG + +I EP AAAI GL V G+
Sbjct: 94 PRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLP--VEEPTGN---- 147
Query: 543 VLIFDLGGGTFDVSILT 559
++ D+GGGT +V++++
Sbjct: 148 -MVVDIGGGTTEVAVIS 163
Score = 30.6 bits (70), Expect = 3.3
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 48/197 (24%)
Query: 607 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 666
++ D+GGGT +V+++++ GI KS + G++ D ++ + ++KY
Sbjct: 148 MVVDIGGGTTEVAVISL-GGIVTSKS----VRVAGDEMDEAIIKY----IRKKYN----- 193
Query: 667 NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRAR-------------- 712
L RTA ER K IEI S + + R R
Sbjct: 194 ---LLIGERTA-ERIK----------IEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEISS 239
Query: 713 --FEELNADLFRGTMEPVEKSLRDAKMD-KAQIHD--IVLVGGSTRIPKVQKLLQDFFNG 767
E + +E V++ L + A I D IVL GG + + KLL D G
Sbjct: 240 EEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDET-G 298
Query: 768 KELNKSINPDEAVAYGA 784
++ + +P VA G
Sbjct: 299 LPVHIAEDPLTCVALGT 315
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 45.3 bits (108), Expect = 8e-05
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
+I +P +++A +++ AG + +I EP AAAI GLD + +G+ ++
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGN-----MV 151
Query: 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
D+GGGT D+++L++ GI S + + G FD +I+
Sbjct: 152 VDIGGGTTDIAVLSLG-GIVTSSSIK------VAGDKFDEAII 187
Score = 31.0 bits (71), Expect = 2.8
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 607 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
++ D+GGGT D+++L++ GI S + G+ FD ++ + ++KYK
Sbjct: 150 MVVDIGGGTTDIAVLSLG-GIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 45.1 bits (108), Expect = 9e-05
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 484 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNV 543
VI VP+ + +R+A +++ AG + +I EP AAAI GL V G+
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--VTEPVGN----- 154
Query: 544 LIFDLGGGTFDVSIL 558
++ D+GGGT +V+++
Sbjct: 155 MVVDIGGGTTEVAVI 169
Score = 38.2 bits (90), Expect = 0.015
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 48/198 (24%)
Query: 607 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 666
++ D+GGGT +V+++++ GI +S + G++ D +V + +RKY
Sbjct: 155 MVVDIGGGTTEVAVISL-GGIVYSESIR----VAGDEMDEAIVQY----VRRKYN----- 200
Query: 667 NKRALRRL----RTACERAKRTLSSSTQA----SIEIDSLFEGVDFYTSITRARFEELNA 718
L RTA E K + S+ S+E+ G D T + + E+++
Sbjct: 201 -------LLIGERTA-EEIKIEIGSAYPLDEEESMEV----RGRDLVTGLPKTI--EISS 246
Query: 719 DLFRGTMEP--------VEKSLRDAKMDKAQ-IHD--IVLVGGSTRIPKVQKLLQDFFNG 767
+ R + V+ L + A I D IVL GG + + KLL + G
Sbjct: 247 EEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-G 305
Query: 768 KELNKSINPDEAVAYGAA 785
++ + +P VA G
Sbjct: 306 LPVHIAEDPLTCVARGTG 323
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 44.5 bits (106), Expect = 2e-04
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ D +R+A K++ AG + +I EP AAAI GL + GS ++
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP--IMEPTGS-----MV 157
Query: 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
D+GGGT +V+++++ GI S R +GG D +I+
Sbjct: 158 VDIGGGTTEVAVISL-GGIVSSSSVR------VGGDKMDEAII 193
Score = 30.3 bits (69), Expect = 4.6
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 51/190 (26%)
Query: 478 LGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAG 537
LG+T N V P KD G IA V + KKV
Sbjct: 57 LGRTPGNIVAIRP----------MKD-GVIADFEV--------TELMLKYFIKKVHKNGS 97
Query: 538 SGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPL- 596
S + ++ + G DV I++ E +G R V + IEE P+
Sbjct: 98 SFPKPRIVICVPSGITDVERRAIKE-AAESAGAREVYL--------------IEE--PMA 140
Query: 597 RSWGSG-----ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651
+ G+G ++ D+GGGT +V+++++ GI V S++ +GG+ D ++
Sbjct: 141 AAIGAGLPIMEPTGSMVVDIGGGTTEVAVISL-GGI--VSSSS--VRVGGDKMDEAIIV- 194
Query: 652 FVQEFKRKYK 661
++KY
Sbjct: 195 ---YVRKKYN 201
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 43.3 bits (103), Expect = 3e-04
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 53/146 (36%)
Query: 424 VVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVS 483
VV DG I V++ G + ++ ++K T E LG+ +++A TA T
Sbjct: 57 VVRDG----IVVDFIG----------AVTIVRRLKATLEEKLGRELTHAA-TAIPPGTSE 101
Query: 484 NAVITVPAYFNDSQRQATKDSGTI------AGLNVLRIINEPTAAAIAYGLDKKVGSTAG 537
D I AGL V +++EPTAAA G+D
Sbjct: 102 ------------------GDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDNGA----- 138
Query: 538 SGERNVLIFDLGGGTFDVSILTIEDG 563
+ D+GGGT +SIL +DG
Sbjct: 139 -------VVDIGGGTTGISIL--KDG 155
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 43.5 bits (103), Expect = 4e-04
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 718 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 773 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 43.0 bits (101), Expect = 5e-04
Identities = 74/321 (23%), Positives = 128/321 (39%), Gaps = 62/321 (19%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGL------NVLRIINEPTAAAIAYGLDKKVGSTAGSG 539
V+TVPA + +Q +++ +AGL L I EP AA+I Y ++
Sbjct: 144 VLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPEAASI-YCRKLRLHQLTDLS 202
Query: 540 ERNVLIFDLGGG-TFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRS 598
+R V FD+ G + D S + + R L+ + G G + + Y
Sbjct: 203 QRAVTNFDIDGSRSIDSSFRQAREQLRRSRHSRTFLV-ESGTGELWSEMQAGDRY----- 256
Query: 599 WGSGERNVLIFDLGGGTFDVSILTIED--GIFE--VKSTAGDTHLGGED--FDNRMVNHF 652
++ D GGGT D+++ IE G + K++ G G D F+ + F
Sbjct: 257 --------IVADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIF 308
Query: 653 VQEFKRKYKKDLTTNKR--ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY----- 705
++F +K KR A L A E KRT + ++ I F +DFY
Sbjct: 309 GEDFIDTFKA-----KRPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRG 363
Query: 706 ----TSITRARFE--------------ELNADLFRGTMEPVEKSLRDAKMDKAQIHDI-- 745
T++ ++ E +LF+ T+ + + + + M K ++ +
Sbjct: 364 QNVETALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHI-ENLMQKPEVKGVKF 422
Query: 746 -VLVGGSTRIPKVQKLLQDFF 765
LVGG P +Q+ +Q+
Sbjct: 423 LFLVGGFAESPMLQRAVQNAL 443
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 42.0 bits (99), Expect = 5e-04
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 39/145 (26%)
Query: 421 PFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGK 480
+VV DG I V++ G + ++ ++K+T E LG +++A G
Sbjct: 27 FADVVRDG----IVVDFLG----------AVEIVRRLKDTLEQKLGIELTHAATAIPPGT 72
Query: 481 TVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGE 540
+ V +S AG+ VL +++EPTAAA +
Sbjct: 73 IEGD--PKVIVNVIES-----------AGIEVLHVLDEPTAAAAVLQIK----------- 108
Query: 541 RNVLIFDLGGGTFDVSILTIEDGIF 565
N + D+GGGT +SIL I+
Sbjct: 109 -NGAVVDVGGGTTGISILKKGKVIY 132
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 41.0 bits (96), Expect = 0.002
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 32/145 (22%)
Query: 453 VLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 512
++ ++K+T E LG ++A TA T + + + AGL V
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAA-TAIPPGTEQGDP------------RISINVIESAGLEV 123
Query: 513 LRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF---EGSG 569
L +++EPTAAA LD + + D+GGGT +SI+ I+ E +G
Sbjct: 124 LHVLDEPTAAADVLQLD------------DGGVVDIGGGTTGISIVKKGKVIYSADEPTG 171
Query: 570 ERNV-LIFDLGGGTFDVSILTIEEY 593
++ L+ G + +S+ E+Y
Sbjct: 172 GTHMTLVL---AGNYGISLEEAEQY 193
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 41.3 bits (98), Expect = 0.002
Identities = 24/118 (20%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 103 KEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKL--KDKISDAE--- 157
+E+ +R++ +A+K +AE K++A++ AK + +++ E E ++++ E
Sbjct: 37 EEEAKRILEEAKK-EAEAIKKEALLEAKEEI----HKLRNEFEKELRERRNELQKLEKRL 91
Query: 158 ---------RTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 206
+ ++L+K + ++ + +++E E K++ELE + + +L + SG
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 39.4 bits (93), Expect = 0.007
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 718 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
A L R +E V SLRD+ + I I+ +GG R P ++ D ++
Sbjct: 364 AHLTRAVLEGVAFSLRDSLEILRELGVPIDRIIAIGGGARSPLWLQIQADVLG-LPVDTL 422
Query: 774 INPDEAVAYGAAVQAAI 790
+E A GAA+ AA+
Sbjct: 423 -KGEEGPALGAAILAAV 438
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 38.8 bits (91), Expect = 0.007
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 472 AVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 531
AV+ AYL + + + A K+ G A L V++ ++ +I K
Sbjct: 5 AVLNAYLAPIMRRYL--------EGVEDALKERGIKAPLYVMQ--SDGGLMSIEEARRKP 54
Query: 532 V-----GSTAG--------SGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573
V G AG +G +N ++ D+GG + DVS I DG E S E V
Sbjct: 55 VETILSGPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVS--LIIDGEPEISSEGEV 107
Score = 34.6 bits (80), Expect = 0.16
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 634
+G +N ++ D+GG + DVS I DG E+ S
Sbjct: 74 AGLKNAIVVDMGGTSTDVS--LIIDGEPEISSEG 105
Score = 31.9 bits (73), Expect = 1.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 568 SGERNVLIFDLGGGTFDVSILTIEEY 593
+G +N ++ D+GG + DVS++ E
Sbjct: 74 AGLKNAIVVDMGGTSTDVSLIIDGEP 99
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 38.9 bits (92), Expect = 0.010
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ + +R+A ++S AG + +I EP AAAI GL V GS ++
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLP--VTEPTGS-----MV 152
Query: 546 FDLGGGTFDVSIL 558
D+GGGT +V+++
Sbjct: 153 VDIGGGTTEVAVI 165
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 38.3 bits (90), Expect = 0.017
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 29/123 (23%)
Query: 444 FFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN-----DSQR 498
F + V +M+L +K+ AEA L ++ AVI G+ P F ++ R
Sbjct: 125 LFEDLVCAMML-HIKQQAEAQLQAAITQAVI----GR---------PVNFQGLGGEEANR 170
Query: 499 QAT---KDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDV 555
QA + + AG + EP AA GLD + T E+ VL+ D+GGGT D
Sbjct: 171 QAEGILERAAKRAGFKDVEFQFEPVAA----GLDFEATLTE---EKRVLVVDIGGGTTDC 223
Query: 556 SIL 558
S+L
Sbjct: 224 SML 226
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 38.1 bits (89), Expect = 0.017
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 718 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
A L R +E V +L D ++ + +VGG R P ++L D G +
Sbjct: 373 AHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVV 431
Query: 773 SINPDEAVAYGAAVQAAI 790
+EA A G A AA
Sbjct: 432 P-EVEEAGALGGAALAAA 448
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 38.0 bits (88), Expect = 0.019
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 484 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNV 543
N V+ P+ +R+A D+ G + +I EP AAAI G D V NV
Sbjct: 100 NVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GADLPVDEPVA----NV 153
Query: 544 LIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT 589
++ D+GGGT +V+I++ G+ R +GG D I++
Sbjct: 154 VV-DIGGGTTEVAIISF-GGVVSCHSIR------IGGDQLDEDIVS 191
>gnl|CDD|117872 pfam09330, Lact-deh-memb, D-lactate dehydrogenase, membrane
binding. Members of this family are predominantly found
in prokaryotic D-lactate dehydrogenase, forming the
cap-membrane-binding domain, which consists of a large
seven-stranded antiparallel beta-sheet flanked on both
sides by alpha-helices. They allow for membrane
association.
Length = 291
Score = 36.5 bits (85), Expect = 0.044
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 730 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEA-------- 779
K +RD + DK + H ++ + G I + +K L+++F E P+E
Sbjct: 102 KRMRDYR-DKYEHHLLLKMSGDG-IEEARKYLKEYFADAEDGDYFECTPEEGKKAFLHRF 159
Query: 780 VAYGAAVQAAILHGDKSEEVQDLLLLDV 807
A GAA++ +H +EV+D++ LD+
Sbjct: 160 AAAGAAIRYRAVH---RDEVEDIVALDI 184
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 36.2 bits (84), Expect = 0.062
Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 37/181 (20%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++ VL+ D+GGGT D ++ ++G S+ + G + + +E ++Y
Sbjct: 166 DKKVLVIDIGGGTTD--VVVFDNGKPVESSS--GSLELG---VSDLYEAIAKELNKEYGI 218
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
DL+ EI+ + E+ +
Sbjct: 219 DLSDE--------------------------EIEEILRNGKIKNYGKEEDITEIIEEAAE 252
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
E + L++ + + + ++LVGG + K + L + F L +P A A
Sbjct: 253 EYAEKILNELKE-FLGLSDVDKVILVGGGAILLK-EYLKELFPENVVLVD--DPQFANAR 308
Query: 783 G 783
G
Sbjct: 309 G 309
Score = 30.1 bits (68), Expect = 4.5
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 514 RIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF 565
++ E A LD+ VL+ D+GGGT D ++ ++G
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDK----KVLVIDIGGGTTD--VVVFDNGKP 189
Score = 29.7 bits (67), Expect = 6.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 541 RNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWG 600
+V +F G G +L E G+ + ++ VL+ D+GGGT DV + + S
Sbjct: 141 EDVKVFPEGVGAL-FDLLLDEGGLLK---DKKVLVIDIGGGTTDVVVFDNGKPVESSSGS 196
Query: 601 S 601
Sbjct: 197 L 197
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 36.2 bits (84), Expect = 0.073
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 718 ADLFRGTMEPVEKSLRD--AKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
L R +E V SLRD + I L+GG + +++L D G +
Sbjct: 365 GHLARAVLEGVAFSLRDCLEVLHGMGTAPQRIKLIGGGAKSELWRQILADVL-GVPVELP 423
Query: 774 INPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 811
N + A + GAA+ AA+ GD ++ + + P+
Sbjct: 424 ANAEGA-SVGAALLAAVGAGDFADLNEAARTVRQLPVI 460
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This
model describes archaeal and eukaryotic orthologs of
bacterial IF-2. Like IF-2, it helps convey the initiator
tRNA to the ribosome, although the initiator is
N-formyl-Met in bacteria and Met here. This protein is
not closely related to the subunits of eIF-2 of
eukaryotes, which is also involved in the initiation of
translation. The aIF-2 of Methanococcus jannaschii
contains a large intein interrupting a region of very
strongly conserved sequence very near the amino end; the
alignment generated by This model does not correctly
align the sequences from Methanococcus jannaschii and
Pyrococcus horikoshii in this region [Protein synthesis,
Translation factors].
Length = 590
Score = 35.9 bits (83), Expect = 0.099
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 28/145 (19%)
Query: 66 EVTFDIDANGIL-------NVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKA 118
E+ D D G++ ++ A+ D G +SK D V +A K
Sbjct: 344 EIKIDTDEEGVVVKADTLGSLEALVNELRDMGVPIKKADIGDVSKRD----VVEAGIAKQ 399
Query: 119 EDEKQKAVISAKNSLESYCFNMK--STVEDEKLKDKISDAERTQILDKCNDVIKWLDANQ 176
ED A+I+ FN+K E E K I I + +W+
Sbjct: 400 EDRVYGAIIA---------FNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWI---- 446
Query: 177 LAEKEEFEHKQKELEAICNPIITKL 201
E E E K+K +EAI P +L
Sbjct: 447 --EGIEEEKKRKWMEAIIKPAKIRL 469
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 35.6 bits (83), Expect = 0.11
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 698 LFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTR 753
+F G+ TRA L+R +E V +LR A+ ++ +V VGG +
Sbjct: 358 VFFGLTLGH--TRA-------HLYRAVLEGVAYALRHILEIAEEAGVKVSRVVAVGGGAK 408
Query: 754 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790
++ D G + N A + G A+ AA+
Sbjct: 409 SRLWMQIKADVL-GLPVVTPENTVGA-SLGDALLAAV 443
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 35.3 bits (82), Expect = 0.16
Identities = 22/98 (22%), Positives = 54/98 (55%), Gaps = 14/98 (14%)
Query: 102 SKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISD------ 155
++E +R++ +A+K +AE K++A++ AK + ++ +E E LK++ ++
Sbjct: 30 AEELAKRIIEEAKK-EAETLKKEALLEAKEEVHKL----RAELERE-LKERRNELQRLER 83
Query: 156 --AERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELE 191
+R + LD+ + + + N +++E +K+K L+
Sbjct: 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLD 121
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 34.9 bits (81), Expect = 0.18
Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 53/204 (25%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E V + D+GGGT D++I + +GG +H K
Sbjct: 202 ELGVALIDIGGGTTDIAIYK-NGALRYTGVIP----VGG--------DHVT--------K 240
Query: 663 DLTTNKRALR-RLRTACERAKRTLSSSTQASIEIDSLFE--GVD----------FYTSIT 709
D+ + L+ A ER K S+ + + + E V + I
Sbjct: 241 DIA---KGLKTPFEEA-ERIKIKYGSALISLADDEETIEVPSVGSDIPRQVTRSELSEII 296
Query: 710 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF---- 765
AR EE +E V+ LR + + +VL GG ++P + +L + F
Sbjct: 297 EARVEE--------ILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPV 348
Query: 766 -NGKELNKSINPDEAV--AYGAAV 786
G LN D A A+ AV
Sbjct: 349 RLGVPLNIVGLTDIARNPAFSTAV 372
Score = 34.1 bits (79), Expect = 0.27
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGER--NVLIFDLGGGTFDVSILT 559
AGL V I+ EP A+A+A E+ V + D+GGGT D++I
Sbjct: 177 AGLKVDNIVLEPLASALA---------VLTEDEKELGVALIDIGGGTTDIAIYK 221
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 35.3 bits (81), Expect = 0.18
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 77 LNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKY-------KAEDEKQKAVISA 129
N+ ++ E +I + + R +E+IE + EK E+++++
Sbjct: 225 ENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL 284
Query: 130 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 189
+ + ++ E LK + + + L + +K L+ EKEE E +KE
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKE 344
Query: 190 LE 191
L+
Sbjct: 345 LK 346
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 31.7 bits (72), Expect = 0.57
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNS----LESYCFNMKSTVEDEKL-KDKISD 155
+S+E+ E ++ +AE KAE E K I LE ++S E E L K
Sbjct: 35 MSEENQELVILEAENSKAEVETLKTKIEEMAESLKDLELDLVTVRS--EKENLTKQLQEK 92
Query: 156 AERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 189
ER L+K N + N L EKE+ + + KE
Sbjct: 93 QERVSELEKLNSSTE----NLLEEKEQEKIQMKE 122
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 32.8 bits (75), Expect = 0.87
Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 49/156 (31%)
Query: 472 AVITAYLGKTVSNAV-----------ITVPAYFNDSQRQATKDSGTIAGLN------VLR 514
AV+ AYL + + I + G + V
Sbjct: 205 AVLNAYLSPILRRYLEAVKDALKERGIKARLMV-------MQSDGGLVSAEEAREKPVET 257
Query: 515 IINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE-------G 567
I++ P A + G N ++FD+GG + DV+ I DG E
Sbjct: 258 ILSGPAAGVVG------AAYLTGLKAGNAIVFDMGGTSTDVA--LIIDGEPEISSETEVA 309
Query: 568 SGER-NVLIFDL-----GGGTFDVSILTIEEYFPLR 597
G V + D+ GGG SI+ ++E PLR
Sbjct: 310 GGYPTRVPMVDIRTVAAGGG----SIVWVDEGGPLR 341
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 32.6 bits (75), Expect = 0.94
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 718 ADLFRGTMEPVE---KSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
ADL R +E V + L +A + ++ ++ VGG R +++ D G+ + +
Sbjct: 386 ADLLRAVLEGVALNLRWLLEAVERFLGRRLGELRFVGGGARSDLWCQIIADVL-GRPIRR 444
Query: 773 SINPDEAVAYGAAVQAAI 790
+P+EA A GAA AA+
Sbjct: 445 VEDPEEAGARGAAAIAAV 462
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 32.6 bits (74), Expect = 1.0
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 92 ITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE--KL 149
I I +R R +I++ +ND E E + +SY +E+E L
Sbjct: 580 IDIETNRSR--SNEIKKQLNDLESRLQE------IEIGFPDDKSYIDKSIREIENEANNL 631
Query: 150 KDKISDAERTQIL-DKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 206
+K ++ + +IL +K I Q+AE + KE+ + N I L +
Sbjct: 632 NNKYNEIQENKILIEKLRGKIDNY-KKQIAEIDSIIPDLKEITSRINDIEDNLKKSRK 688
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 32.5 bits (75), Expect = 1.0
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 730 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEA--------V 780
K ++D + DK + H ++ + G I + + L+++F E + P+E
Sbjct: 372 KRMKDYR-DKYEHHLLLKMSGDG-IEEARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFA 429
Query: 781 AYGAAVQAAILHGDKSEEVQDLLLLDV 807
A GAA++ +H D EV+D+L LD+
Sbjct: 430 AAGAAIRYRAVHRD---EVEDILALDI 453
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 31.5 bits (72), Expect = 1.0
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 685 LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHD 744
LSS T + +L EG+ R E L A +D+
Sbjct: 110 LSSPTTLANLYRALLEGL-ALA--LRQILEALAEL--------------GAPIDR----- 147
Query: 745 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790
I+ GG +R P + +LL D G+ + + EA A GAA+ AA+
Sbjct: 148 IIASGGGSRNPLLLQLLADAL-GRPV-EVPETAEATALGAALLAAV 191
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 32.3 bits (74), Expect = 1.1
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 88 KENKITITNDRGRLSKEDIERMVNDAEKYKAE-DEKQKAVISAKNSLESYCFNMKSTVED 146
KE + L+ E +E+ + + EK K E +E+ + + L+ +K +E+
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
Query: 147 -EKLKDK-------ISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEA 192
+K K K +++ R ++L++ +K E +E E K+++L
Sbjct: 431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 31.7 bits (72), Expect = 2.0
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 770 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808
L +S+N DEA+ Y AV A + D++E +D L LD T
Sbjct: 901 LMRSLN-DEAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains in
association with the GGDEF (DiGuanylate-Cyclase (DGC))
domain. The GGDEF domain has been suggested to be
homologous to the adenylyl cyclase catalytic domain and
is thought to be involved in regulating cell surface
adhesiveness in bacteria. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown.
Length = 105
Score = 29.3 bits (66), Expect = 2.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 379 RLIGDA-AKNQVAMNPNNTIFDAKRLIGRK 407
RL+ DA + V ++P ++ +AKRL+ K
Sbjct: 51 RLVADAMTREVVTISPEASLLEAKRLMEEK 80
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 31.1 bits (71), Expect = 2.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERN--VLIFDLGGGTFDVSILT 559
GL V I+ A+AIA E+ V + D+GGGT D+++ T
Sbjct: 170 CGLEVDNIVLSGLASAIA---------VLTEDEKELGVCLIDIGGGTTDIAVYT 214
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 30.8 bits (70), Expect = 3.7
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 695 IDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG 750
I S G FY D+ R +E + R ++K + IV++GG
Sbjct: 339 IRSEIAGGAFY----GLTDTTSQEDITRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGG 394
Query: 751 STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788
+R +L GK + ++ E VA GAA+ A
Sbjct: 395 GSRNKLWLQLKASVL-GKPIE-VLDEAELVALGAALLA 430
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 30.5 bits (69), Expect = 4.1
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 113 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 172
+K + +D + + S N + + E +LK++I + IL+K + +
Sbjct: 62 EKKLENKDNPELEIASLPNRFLAIVPGNEEEAE--ELKEEIEEETWESILNKVKEYLDIE 119
Query: 173 DANQLAEKEE-FEHKQKELEAI 193
+ K + E +E
Sbjct: 120 NVEPFLLKSDALERISDRIEDG 141
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 30.7 bits (69), Expect = 4.1
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 97 DRGRLSKEDIERMVNDAEKY----KAEDEKQKAVISAKNSLESYCFNMKSTVED-----E 147
+ +++ + +A K K EK +A+ S N E+Y MK ++ E
Sbjct: 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE 333
Query: 148 KLKDKISDAE-RTQILDKCNDVIKWLDANQLAEKEEFEHKQKELE 191
KLK +I E + L D + Q E+FE +E E
Sbjct: 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQERE 378
>gnl|CDD|236642 PRK10030, PRK10030, hypothetical protein; Provisional.
Length = 197
Score = 29.3 bits (66), Expect = 5.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 84 KSTGKENKITITNDRGRLSKEDIERMVNDAEKY 116
+ G++ K + LS E +++ A++Y
Sbjct: 78 IAHGEKGKYVVRRLENGLSVEQQQKLAQTAKRY 110
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 29.6 bits (67), Expect = 8.1
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 718 ADLFRGTMEPVEKSLRDAKMD-----KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
AD++R +E + LRD +D +I I + GG +R ++L D F G + +
Sbjct: 363 ADIYRALLEGIAYELRDN-LDALEAAGIKIDRIRVTGGGSRSDLWLQILADIF-GLPV-E 419
Query: 773 SINPDEAVAYGAAVQA 788
+ EA A GAA+ A
Sbjct: 420 TPEVREAGALGAALLA 435
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 29.3 bits (66), Expect = 8.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 607 LIFDLGGGTFDVSILTIE-DGIFEVKSTAGDTHLG 640
LI DLGG T DV+ + + +GI ++ GD+ +G
Sbjct: 167 LIVDLGGTTLDVAHVRGQLEGISKIH---GDSRIG 198
>gnl|CDD|206204 pfam14034, Spore_YtrH, Sporulation protein YtrH. This family of
proteins is involved in sporulation. It may contribute
to the formation and stability of the thick
peptidoglycan layer between the two membranes of the
spore, known as the cortex. In Bacillus subtilis its
expression is regulated by sigma-E.
Length = 102
Score = 27.9 bits (63), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 550 GGTFDVSILTIEDGIFEG 567
GGTFD + ++E G+FEG
Sbjct: 53 GGTFD-TFRSLERGLFEG 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,316,663
Number of extensions: 4254283
Number of successful extensions: 4598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4354
Number of HSP's successfully gapped: 163
Length of query: 840
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 735
Effective length of database: 6,280,432
Effective search space: 4616117520
Effective search space used: 4616117520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.9 bits)