RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7262
(840 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 796 bits (2058), Expect = 0.0
Identities = 332/472 (70%), Positives = 361/472 (76%), Gaps = 81/472 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGR+F
Sbjct: 19 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRF 78
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
+DA VQ+DMKHWPF VV+D G+PK++VEYKGE K+F+PEEVSSMVLTKMKE AE
Sbjct: 79 DDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAE------ 132
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAIAYGL
Sbjct: 133 -------AYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 185
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
DKK ERNVLIFDLGGGTFDVSILTI GIFE V G T
Sbjct: 186 DKK-----VGAERNVLIFDLGGGTFDVSILTIAAGIFE------VK--STAGDTH----- 227
Query: 589 TIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
LGG FD ++ N
Sbjct: 228 ----------------------LGGEDFDNRMV------------------------NHF 241
Query: 649 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSI 708
+ F ++ K KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSI
Sbjct: 242 IAEFKRKHK----KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSI 297
Query: 709 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 768
TRARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGK
Sbjct: 298 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK 357
Query: 769 ELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
ELNKSINPDEAVAYGAAVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGGV
Sbjct: 358 ELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGV 409
Score = 320 bits (823), Expect = e-100
Identities = 130/145 (89%), Positives = 139/145 (95%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPR
Sbjct: 410 MTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPR 469
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAED
Sbjct: 470 GVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAED 529
Query: 121 EKQKAVISAKNSLESYCFNMKSTVE 145
EKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 530 EKQRDKVSSKNSLESYAFNMKATVE 554
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 488 bits (1259), Expect = e-164
Identities = 198/483 (40%), Positives = 270/483 (55%), Gaps = 105/483 (21%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
+ ++ N +G+RTTPS +A+T E L+G AK Q NP NT+F KRLIGR+F
Sbjct: 18 IMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 77
Query: 409 EDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ D+ PF+++ +D G ++V+ + P ++S+ VL KMK+TAE YLG+
Sbjct: 78 QDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQISAEVLKKMKKTAEDYLGE 133
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AYG
Sbjct: 134 PVTEAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEGSGERNVLIFDLGGGTF 583
LDK +G R + ++DLGGGTFD+SI+ I+ + FE VL G T
Sbjct: 181 LDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFE------VL--ATNGDTH 226
Query: 584 DVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 643
LGG FD
Sbjct: 227 ---------------------------LGGEDFD-------------------------- 233
Query: 644 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 703
+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 234 --SRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITAD 289
Query: 704 ------FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 757
+TRA+ E L DL ++EP++ +L+DA + + I D++LVGG TR+P V
Sbjct: 290 ATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMV 349
Query: 758 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA 817
QK + +FF GKE K +NPDEAVA GAAVQ +L GD V+D+LLLDVTPLSLGIET
Sbjct: 350 QKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETM 404
Query: 818 GGV 820
GGV
Sbjct: 405 GGV 407
Score = 254 bits (651), Expect = 1e-74
Identities = 83/203 (40%), Positives = 117/203 (57%), Gaps = 6/203 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 408 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR 467
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L++++I++MV DAE D
Sbjct: 468 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEAD 526
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
K ++ +N + + + VE+ DK+ ++T I + L +K
Sbjct: 527 RKFDELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DK 581
Query: 181 EEFEHKQKELEAICNPIITKLYQ 203
E K +EL + ++ Q
Sbjct: 582 AAIEAKMQELAQVSQKLMEIAQQ 604
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 468 bits (1208), Expect = e-159
Identities = 139/218 (63%), Positives = 166/218 (76%), Gaps = 19/218 (8%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V ++GK EI+AN+QGNR TPSYVAFTD ERLIGDAAKNQVA NP NTIFD KRLIG K+
Sbjct: 33 AVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKY 92
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D +VQ D+KH PF VV+ GKP ++V KGE K F PEE+S M+L KMK+ AE
Sbjct: 93 NDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAE------ 146
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
YLG V++AV+TVPAYFND+QRQATKD+GTIAGLNVLRI+NEPTAAAIAYGL
Sbjct: 147 -------DYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGL 199
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
DK E ++++DLGGGTFDVS+L+IE+G+FE
Sbjct: 200 DKS------DKEHQIIVYDLGGGTFDVSLLSIENGVFE 231
Score = 454 bits (1171), Expect = e-154
Identities = 109/191 (57%), Positives = 152/191 (79%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
E ++++DLGGGTFDVS+L+IE+G+FEV++T+GDTHLGGEDFD ++V ++ FK+K+
Sbjct: 203 DKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKH 262
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
D++ N +AL +L+ E+AKR LSS IEIDS +G+D ++TRA+FEELN DL
Sbjct: 263 GIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDL 322
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 780
F+ T++PVEK L+D+ ++K + DIVLVGGSTRIPKVQ+LL+ +F+GK+ +K INPDEAV
Sbjct: 323 FKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAV 382
Query: 781 AYGAAVQAAIL 791
AYGAAVQA +L
Sbjct: 383 AYGAAVQAGVL 393
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 469 bits (1209), Expect = e-159
Identities = 182/218 (83%), Positives = 191/218 (87%), Gaps = 16/218 (7%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRLIGRKF
Sbjct: 38 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKF 97
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
EDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AE
Sbjct: 98 EDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAE------ 151
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLG V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAAIAYGL
Sbjct: 152 -------AYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGL 204
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
DKK + GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 205 DKKGCA---GGEKNVLIFDLGGGTFDVSILTIEDGIFE 239
Score = 459 bits (1184), Expect = e-155
Identities = 174/198 (87%), Positives = 187/198 (94%)
Query: 597 RSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 656
+ GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV+H +EF
Sbjct: 207 KGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEF 266
Query: 657 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 716
KRK+KKD+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSITRARFEEL
Sbjct: 267 KRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEEL 326
Query: 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 776
NADLFRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINP
Sbjct: 327 NADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP 386
Query: 777 DEAVAYGAAVQAAILHGD 794
DEAVAYGAAVQAAIL GD
Sbjct: 387 DEAVAYGAAVQAAILIGD 404
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 453 bits (1169), Expect = e-153
Identities = 176/454 (38%), Positives = 247/454 (54%), Gaps = 101/454 (22%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
+ ++ N +G+RTTPS +A+T E L+G AK Q NP NT+F KRLIGR+F
Sbjct: 18 IMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 77
Query: 409 EDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ D+ PF+++ +D G ++V+ + P ++S+ VL KMK+TAE YLG+
Sbjct: 78 QDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQISAEVLKKMKKTAEDYLGE 133
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AYG
Sbjct: 134 PVTEAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEGSGERNVLIFDLGGGTF 583
LDK +G R + ++DLGGGTFD+SI+ I+ + FE VL + G T
Sbjct: 181 LDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFE------VLATN--GDTH 226
Query: 584 DVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 643
LGG FD
Sbjct: 227 ---------------------------LGGEDFD-------------------------- 233
Query: 644 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 703
+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 234 --SRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITAD 289
Query: 704 ------FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 757
+TRA+ E L DL ++E ++ +L+DA + + I D++LVGG TR+P V
Sbjct: 290 ATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMV 349
Query: 758 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791
QK + +FF GKE K +NPDEAVA GAAVQ +L
Sbjct: 350 QKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 455 bits (1173), Expect = e-152
Identities = 193/475 (40%), Positives = 262/475 (55%), Gaps = 120/475 (25%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409
V + G+V++I N +GNRTTPS VAF + ERL+G+ AK Q NPN TI KR +G +
Sbjct: 18 VLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN-TIISIKRHMGTDY- 75
Query: 410 DATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTV 469
KVE +G K + P+E+S+++L +K AE YLG+ V
Sbjct: 76 ------------------------KVEIEG--KQYTPQEISAIILQYLKSYAEDYLGEPV 109
Query: 470 SNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLD 529
+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AYGLD
Sbjct: 110 TRAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 530 KKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT 589
K+ ++ +L++DLGGGTFDVSIL + DG+FE V G
Sbjct: 157 KE-------EDQTILVYDLGGGTFDVSILELGDGVFE------VKATA--GDNH------ 195
Query: 590 IEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 649
LGG FD ++
Sbjct: 196 ---------------------LGGDDFD----------------------------QVII 206
Query: 650 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFY 705
++ V +FK+++ DL+ +K AL+RL+ A E+AK+ LS TQ I I + G +
Sbjct: 207 DYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLE 266
Query: 706 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 765
++TRA+FEEL+A L TM PV ++L+DA + A I ++LVGGSTRIP VQ+ ++
Sbjct: 267 MTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL 326
Query: 766 NGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GKE +K +NPDE VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV
Sbjct: 327 -GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGV 376
Score = 229 bits (587), Expect = 1e-66
Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
T LI+RNTTIPT ++Q FTT +DNQ V I V +GER M DN LG+F+LT IPPAPR
Sbjct: 377 FTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPR 436
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGI++V A + T KE ITI + G LS+E+I+RM+ +AE+ D
Sbjct: 437 GVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEAD 495
Query: 121 EKQKAVISAKNSLE 134
K+K +N +
Sbjct: 496 RKRKEAAELRNEAD 509
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 454 bits (1170), Expect = e-149
Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
R V D+G ++ SI+ + G +V TA D H GG DFD + HF EFK KY
Sbjct: 194 EKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKY 253
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
K D+ N +A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL L
Sbjct: 254 KIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPL 313
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 780
EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+
Sbjct: 314 LERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAI 372
Query: 781 AYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVS 821
A GAA AI V+ D+ P S+ V
Sbjct: 373 AKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVE 411
Score = 434 bits (1118), Expect = e-142
Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 25/250 (10%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V ++ ++I+ N+ NR+TPS V F R +G+ KN+ N NT+ + KR+IG +
Sbjct: 17 AVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDY 76
Query: 409 EDATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+ + KH+ ++V D K +V + GE F ++++M + K+K+T +
Sbjct: 77 HHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKA 136
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
+++ I VP ++ + QR D+ IAGLN +RI+N+ TAA ++YG
Sbjct: 137 NITDVCIA-------------VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFD 584
+ K R V D+G ++ SI+ + G + + +++ GG FD
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKH-----FGGRDFD 238
Query: 585 VSILTIEEYF 594
++I E+F
Sbjct: 239 LAIT---EHF 245
Score = 332 bits (854), Expect = e-103
Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPA 58
+ ++ P+ + T D T + + +E+T + P
Sbjct: 415 HMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEG 472
Query: 59 PRGVPQIEVTFDIDANGILNV----------TAIEKSTGKENKITITNDRGRLSKEDIER 108
VP +++ D +G+ + + T K++ +TI L + +
Sbjct: 473 QDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNE 531
Query: 109 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 168
++ + A+D+ KN+LE Y + ++ +E+E SDAE+T++ N
Sbjct: 532 LIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKA 590
Query: 169 IKWL-DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAP 209
+WL D + K ++ K +EL ++ N I +
Sbjct: 591 EEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKK 632
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 305 bits (784), Expect = e-100
Identities = 91/134 (67%), Positives = 115/134 (85%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+ LG FEL+ IPPAPR
Sbjct: 19 MTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTF+IDANGILNV+A +KSTGK N+ITI N++GRL++ DI+RMV++A++++ ED
Sbjct: 79 GVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKED 138
Query: 121 EKQKAVISAKNSLE 134
+Q+ + A+N LE
Sbjct: 139 GEQRERVQARNQLE 152
Score = 41.4 bits (98), Expect = 3e-04
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 806 DVTPLSLGIETAGGV 820
DV PLSLGIETAGGV
Sbjct: 4 DVAPLSLGIETAGGV 18
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 304 bits (781), Expect = 2e-99
Identities = 92/134 (68%), Positives = 112/134 (83%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNNLLGKFELT IPPAPR
Sbjct: 19 MTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTF +DANGIL V+A +K TGK ITITND+GRL++E+I+RMV +AEK+ +ED
Sbjct: 79 GVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASED 138
Query: 121 EKQKAVISAKNSLE 134
KA + ++N LE
Sbjct: 139 ASIKAKVESRNKLE 152
Score = 41.4 bits (98), Expect = 3e-04
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 806 DVTPLSLGIETAGGV 820
DV L+LGIET GGV
Sbjct: 4 DVNALTLGIETTGGV 18
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 299 bits (768), Expect = 1e-97
Identities = 83/134 (61%), Positives = 106/134 (79%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+ LG F++T IPPAPR
Sbjct: 19 MTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTF+ID NGIL+V+A +K TG +NK+TITND RLS EDIERM+NDA+K+ A+D
Sbjct: 79 GVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADD 138
Query: 121 EKQKAVISAKNSLE 134
+ QK + ++N LE
Sbjct: 139 QAQKEKVESRNELE 152
Score = 41.0 bits (97), Expect = 3e-04
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 806 DVTPLSLGIETAGGV 820
DV PL+LGIET GGV
Sbjct: 4 DVNPLTLGIETVGGV 18
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 252 bits (645), Expect = 1e-78
Identities = 83/206 (40%), Positives = 118/206 (57%), Gaps = 6/206 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 20 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR 79
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L++++I++MV DAE D
Sbjct: 80 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEAD 138
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
K + ++ +N + + + VE+ DK+ ++T I + L +K
Sbjct: 139 RKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DK 193
Query: 181 EEFEHKQKELEAICNPIITKLYQGSG 206
E K +EL + ++ Q
Sbjct: 194 AAIEAKMQELAQVSQKLMEIAQQQHA 219
Score = 46.5 bits (111), Expect = 9e-06
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 802 LLLLDVTPLSLGIETAGGV 820
+LLLDVTPLSLGIET GGV
Sbjct: 1 VLLLDVTPLSLGIETMGGV 19
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 240 bits (616), Expect = 3e-74
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 6/205 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
+ +I RNTTIP + Q FTT+ D Q + I V +GER + +D L +F L IP P
Sbjct: 17 VEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPA 76
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
G I VTF +DA+G+L+VTA+EKSTG E I + G L+ +I M+ D+ Y +D
Sbjct: 77 GGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSEIASMIKDSMSYAEQD 135
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
K + + K ++ + +S AER I D + + + +
Sbjct: 136 VKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGD---DV 190
Query: 181 EEFEHKQKELEAICNPIITKLYQGS 205
+ E K ++ + S
Sbjct: 191 DAIEQAIKNVDKQTQDFAARRMDQS 215
Score = 42.6 bits (101), Expect = 2e-04
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 805 LDVTPLSLGIETAGGV 820
+DV PLSLG+ET GG+
Sbjct: 1 MDVIPLSLGLETMGGL 16
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 232 bits (594), Expect = 9e-72
Identities = 80/145 (55%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
T LI RNTTIPTK++Q F+T +D Q V I+V +GER M DN LLG+F L IPPAPR
Sbjct: 39 FTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPR 98
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGI++V+A +K TG+E +I I + G LSK+DIE MV +AEKY ED
Sbjct: 99 GVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGG-LSKDDIENMVKNAEKYAEED 157
Query: 121 EKQKAVISAKNSLESYCFNMKSTVE 145
++K + A N E + ++ +E
Sbjct: 158 RRKKERVEAVNMAEGIIHDTETKME 182
Score = 55.7 bits (135), Expect = 5e-09
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 787 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
L + +DVTPLSLGIET GGV
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGV 38
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 222 bits (568), Expect = 2e-68
Identities = 77/134 (57%), Positives = 98/134 (73%), Gaps = 1/134 (0%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N LLG+F L IPPAPR
Sbjct: 19 MTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G LSK+ IE M+ +AEK AED
Sbjct: 79 GVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQIENMIKEAEKNAAED 137
Query: 121 EKQKAVISAKNSLE 134
K+K ++ N E
Sbjct: 138 AKRKELVEVINQAE 151
Score = 38.8 bits (91), Expect = 0.002
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 806 DVTPLSLGIETAGGV 820
DVTPLSLGIET GG+
Sbjct: 4 DVTPLSLGIETLGGI 18
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 177 bits (452), Expect = 2e-52
Identities = 60/99 (60%), Positives = 72/99 (72%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 36 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR 95
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 99
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 96 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134
Score = 52.4 bits (126), Expect = 2e-08
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 788 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
++ H + ++DVTPLSLGIET GGV
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGV 35
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 153 bits (389), Expect = 4e-44
Identities = 52/97 (53%), Positives = 70/97 (72%)
Query: 113 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 172
+ + + LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 173 DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAP 209
D+NQ AEKEEFEH+QK+LE + NPII+KLYQ +GGAP
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAP 99
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 133 bits (336), Expect = 6e-37
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
+SAKN+LESY FNMKS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 182 EFEHKQKELEAICNPIITKLYQGSGGAP 209
EFEHK+KELE +CNPII+ LYQG+GG
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPG 90
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 130 bits (327), Expect = 9e-36
Identities = 57/84 (67%), Positives = 69/84 (82%)
Query: 126 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEH 185
V + LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 186 KQKELEAICNPIITKLYQGSGGAP 209
+QKELE +CNPIITKLYQ +GG P
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMP 85
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 104 bits (261), Expect = 8e-25
Identities = 45/341 (13%), Positives = 87/341 (25%), Gaps = 139/341 (40%)
Query: 448 EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTI 507
+ ++ ++K E LG + A +P +A
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATA-------------IPPGTVGRNAEACGHVVAG 117
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEG 567
AGL ++ +++EP AAA A G++ +
Sbjct: 118 AGLELVTLVDEPVAAARALGINDGI----------------------------------- 142
Query: 568 SGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGI 627
+ D+GGGT ++++ + G T
Sbjct: 143 -------VVDIGGGTTGIAVI---------------------EKGKITATFDE------- 167
Query: 628 FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 687
GG + + F A E K+ S
Sbjct: 168 ----------PTGGTHLSLVLAGSYKIPF------------------EEA-ETIKKDFSR 198
Query: 688 STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL 747
+ + R +E + +++ + Q + +
Sbjct: 199 HREIMRVV--------------------------RPVIEKMALIVKEVIKNYDQTLPVYV 232
Query: 748 VGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788
VGG+ + + F GKE+ I+P G A+
Sbjct: 233 VGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALFG 272
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 79.5 bits (195), Expect = 3e-16
Identities = 28/317 (8%), Positives = 79/317 (24%), Gaps = 103/317 (32%)
Query: 474 ITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 533
+T Y + + + +++ T + G + ++++ E A +
Sbjct: 104 LTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD-- 161
Query: 534 STAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEY 593
++LI DLGG T D+S
Sbjct: 162 -----------------------------------ELDSLLIIDLGGTTLDISQ------ 180
Query: 594 FPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653
+ + + GD+ LG + + +
Sbjct: 181 -----------------------------VMGKLSGISKIYGDSSLGVSLVTSAVKDALS 211
Query: 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF 713
+ ++ A + + + + I I
Sbjct: 212 LARTK------GSSYLADDIIIHRKDNNYLKQRINDENKISI------------------ 247
Query: 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELN 771
+ + +E+ + + + + ++++GG + + ++ +
Sbjct: 248 ---VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFF 302
Query: 772 KSINPDEAVAYGAAVQA 788
K+ N + G +
Sbjct: 303 KTNNSQYDLVNGMYLIG 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.2 bits (192), Expect = 7e-15
Identities = 117/718 (16%), Positives = 204/718 (28%), Gaps = 287/718 (39%)
Query: 171 WLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPVQPFTTTQVLCSKLFTFHQFY 230
+ A+QL +E+F K L P T+ + TT L K
Sbjct: 27 FFIASQL--QEQF---NKIL-----PEPTEGFAAD-----DEPTTPAELVGK-------- 63
Query: 231 PKSSCFLHNFNIVGHSSDANFESFWKGGERKKSDKNSTDLFLEVLANVIKRQKFLVTYLL 290
FL G+ S + + F +VL + F YL
Sbjct: 64 -----FL------GYVSS-------------LVEPSKVGQFDQVLNLCLTE--FENCYLE 97
Query: 291 K----SFACGPEDYIFDKSASLTIVDQKFYRSQQLKCF--AQNFSHFTNFIPSHPVSFIT 344
+ A + T+V K +K + A+ + P S
Sbjct: 98 GNDIHALAAK-----LLQENDTTLVKTKEL----IKNYITARIMAK----RPFDKKS--N 142
Query: 345 SALQGVFQH---GKVEIIA--NDQGNRTTP---------SYVAFTDTERLIGDAAK--NQ 388
SAL F+ G +++A QGN +Y LI +A+ ++
Sbjct: 143 SAL---FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSE 197
Query: 389 VAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEE 448
+ DA+++ + ++ W + + P +Y P
Sbjct: 198 LIRTTL----DAEKVFTQGL-------NILEW---LENPSNTPD--KDYLLSIPISCP-- 239
Query: 449 VSSMVLTKMKETAEAYLGKTVSNAVITA-YLGKTVSNAVITVPAYFNDSQRQATKDSGTI 507
+ + ++ ++ V+TA LG T P + AT G
Sbjct: 240 --LIGVIQL------------AHYVVTAKLLGFT--------PGELRSYLKGAT---GHS 274
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEG 567
GL TA AIA S E F F I
Sbjct: 275 QGL--------VTAVAIA---------ETDSWES----F------FVSVRKAIT------ 301
Query: 568 SGERNVLIFDLGGGTFDVSILTIEEYFPLR---------SWGSGERNVLIFDLGGGTF-- 616
++F +G + E +P S + E G +
Sbjct: 302 ------VLFFIG--------VRCYEAYPNTSLPPSILEDSLENNE--------GVPSPML 339
Query: 617 ---DVSILTIEDGIFEVKSTAGDTHLGGEDFDNR----MVN---HFVQEFKRKYKKDLTT 666
+++ ++D + + ++HL + +VN + V ++
Sbjct: 340 SISNLTQEQVQDYVNKT-----NSHLPA---GKQVEISLVNGAKNLV----------VSG 381
Query: 667 NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS---ITRARFEELNADLFRG 723
++L L +AK S Q+ I + F + + F ++ L
Sbjct: 382 PPQSLYGLNLTLRKAKAP-SGLDQSRIPFSE--RKLKFSNRFLPVA-SPF---HSHL--- 431
Query: 724 TMEP-VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINPD-- 777
+ P + +D + + +IP + D F+G L+ SI+
Sbjct: 432 -LVPASDLINKDLVKNNVSFN-----AKDIQIP-----VYDTFDGSDLRVLSGSISERIV 480
Query: 778 -----EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVSYSQSQLGWL 830
V + Q H +LD P GG S LG L
Sbjct: 481 DCIIRLPVKWETTTQFKATH-----------ILDFGP--------GGA----SGLGVL 515
Score = 61.6 bits (149), Expect = 1e-09
Identities = 85/521 (16%), Positives = 149/521 (28%), Gaps = 170/521 (32%)
Query: 155 DAERTQILDKCNDVIK-WLDANQLAEKEEFEHKQKEL-EAICNPIITKLY-----QGSGG 207
E L K ++IK ++ A +A++ + L A+ +L QG+
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN-AQLVAIFGGQGNTD 167
Query: 208 AP--------------VQPFTTT-----QVLCSKLFTFHQFYPKS---SCFLHN------ 239
V L + + + +L N
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 240 ----------FNIVGHSSDANFESFWKGGERKKSDKNSTDLFLEVLANVIKRQKFLVTYL 289
++G A++ K +L L + LVT +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVT-----AKLLGFTPGELR-SYLKGATGHSQGLVTAV 281
Query: 290 LKSFACGPEDYIFDKSAS--LTIVDQKFY---RSQQLKCFAQNFSHFTNFIPSHPVSFIT 344
+ E F S +T++ F+ R + ++P + +
Sbjct: 282 AIAETDSWES--FFVSVRKAITVL---FFIGVRCYE----------------AYPNTSLP 320
Query: 345 -SALQGVFQHGKVEIIANDQGNRTTPSY------VAFTDTERLIGDA-----AKNQVAM- 391
S L+ + + N++G PS + + + A QV +
Sbjct: 321 PSILE--------DSLENNEG---VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 392 --N-PNNTIF--DAKRLIG-----RKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEA 441
N N + + L G RK + A D PF K K
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLDQSRIPF----SERKLKFSNR----- 419
Query: 442 KTFFPEEVS----SMVLTKMKETAEAYLGKTVSNAVITA-YLGKTVSNAVITVPAYFNDS 496
F P V+ S +L + L K +N A + +P Y
Sbjct: 420 --FLP--VASPFHSHLLVPASDLINKDLVK--NNVSFNAKDIQ---------IPVYDTFD 464
Query: 497 QRQATKDSGTIAGLNVLRIINEP---TAAAIAYGLDKKVGSTAGSGERNVLIFDLG-GGT 552
SG+I+ V II P + +T I D G GG
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTT-------QFKATH--------ILDFGPGGA 509
Query: 553 FDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEY 593
+ +LT +G+G R ++ GT D++ ++Y
Sbjct: 510 SGLGVLTHR--NKDGTGVRVIV-----AGTLDIN--PDDDY 541
Score = 32.7 bits (74), Expect = 0.64
Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 62/161 (38%)
Query: 701 GVDFYTSITRAR--FEELNADLFRGTME-------------PVE----------KSLRD- 734
G+D Y + A+ + AD + PV K +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNR--ADNH--FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 735 -AKMDKAQIHDIVLVGGSTRIPKV-----QKLLQDFFNGKE--LNKSIN--PDEAVAYGA 784
+ M I D G + K+ + F ++ L+ + P A+
Sbjct: 1688 YSAMIFETIVD-----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--AL---T 1737
Query: 785 AVQAAILHGDKSEEVQDLLLLDVTP--LSLGIETAGGVSYS 823
++ A KS+ + D T SLG E Y+
Sbjct: 1738 LMEKAAFEDLKSKGLIP---ADATFAGHSLG-E------YA 1768
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 61.2 bits (148), Expect = 3e-10
Identities = 24/193 (12%), Positives = 56/193 (29%), Gaps = 34/193 (17%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
+NV + D GG S+ S G +D R+ +
Sbjct: 171 NKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVKDLIIRVGD----ALTDLNNG 223
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+L TN++A L + + + + I+ +
Sbjct: 224 NLITNEQAESALNNGYMKKGGEIDTESSTVIK------------------------KVKE 259
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
++ K + Q+ ++ +GG+T+ +++ + + + N
Sbjct: 260 KFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCE 316
Query: 783 GAAVQAAILHGDK 795
G A + +
Sbjct: 317 GLYKVAVAKYCIQ 329
Score = 43.5 bits (102), Expect = 2e-04
Identities = 13/118 (11%), Positives = 30/118 (25%), Gaps = 25/118 (21%)
Query: 484 NAVITVPA--YFNDSQRQATKD------------SGTIAGLNVLRIINEPTAAAIAYGLD 529
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 530 KKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
+ +NV + D GG + + S I + G + +
Sbjct: 167 ENFK------NKNVAVIDFGGLNMG--FSLYRNCVVNPS---ERFIEEHGVKDLIIRV 213
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 60.6 bits (146), Expect = 7e-10
Identities = 54/443 (12%), Positives = 112/443 (25%), Gaps = 139/443 (31%)
Query: 355 KVEIIANDQGNRTT------------PSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKR 402
+ ++ D G T PS A T+TE ++ + T F
Sbjct: 20 HMVVVGLDVGYGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKF---- 75
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
+ G+ + +E ++ + E+
Sbjct: 76 IYGKYASG----------------------NNIRVPQGDGRLASKEAFPLIAAALWESGI 113
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
G V + + P D + +A K++ L V E
Sbjct: 114 HNDGSPVDLVIGS------------GTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQF 161
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
I +++ +G G ++ L G
Sbjct: 162 NI----------------TRLIMR------------------PQGVG---AALYLLNQGI 184
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
+ ++ D+G T DV + + D V + +G
Sbjct: 185 IEQQ----------------PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVG 227
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
D + + +E DL Q ++ +F
Sbjct: 228 DAISALSRKIAKETGFVVPFDL------------------------AQEALSHPVMFRQK 263
Query: 703 DF-YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 761
++ E+L + +E + +LR + ++ VGG + + +
Sbjct: 264 QVGGPEVSGPILEDLANRI----IENIRLNLRGEVDR---VTSLIPVGGGSNL--IGDRF 314
Query: 762 QDFFNGKELNKSI-NPDEAVAYG 783
++ G + + A A G
Sbjct: 315 EEIAPGTLVKIKPEDLQFANALG 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 1e-08
Identities = 73/535 (13%), Positives = 137/535 (25%), Gaps = 169/535 (31%)
Query: 315 FYRSQQLKCFAQNFSHFT-NFIPSHPVSFITSALQGVFQHGKVEIIANDQGNRTTPSYVA 373
F + + S F F+ + + + + +++ I + + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRL 67
Query: 374 FTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKI 433
F + + V KF + ++ + K + I
Sbjct: 68 FW----TLLSKQEEMVQ----------------KFVEEVLRINYK-FLMS--------PI 98
Query: 434 KVEYKGEA--KTFFPEEVSSM-----VLTKM-------KETAEAYLGKTVSNAVITAY-- 477
K E + + + E+ + V K L + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 478 --LGKTV-SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-----AAIAYGLD 529
GKT + V + Q D I LN+ + N P + Y +D
Sbjct: 159 LGSGKTWVALDVC------LSYKVQCKMDFK-IFWLNL-KNCNSPETVLEMLQKLLYQID 210
Query: 530 KKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT 589
S + L + + E +L+ +V
Sbjct: 211 PNWTSRSDHSSNIKL-------RIHSIQAELRRLLKSKPYENCLLVLL------NVQNAK 257
Query: 590 IEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 649
F L +L+ T + + S A TH+ + +
Sbjct: 258 AWNAFNLSC------KILL------------TTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 650 NHFVQEFKRKY----KKDL-----TTNKRAL----RRLR-----------TACERAKRTL 685
V+ KY +DL TTN R L +R C++ +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 686 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR--------------GTMEPVE-- 729
SS ++ L + R F+ L+ +F + +
Sbjct: 360 ESS------LNVL------EPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 730 --------KSL--RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 774
SL + K I I L +L N L++SI
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEYALHRSI 449
Score = 52.2 bits (124), Expect = 7e-07
Identities = 86/636 (13%), Positives = 171/636 (26%), Gaps = 213/636 (33%)
Query: 262 KSDKNSTDLFLEVL----ANVIKRQKFLVTYLLKSFACGPEDYIFDKSASLTI---VDQK 314
K + T L ++++ F+ L ++ ++ + + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINY-----KFLMSPIKTEQRQPSMMTR 110
Query: 315 FYRSQQLKCF--AQNFSHFTNFIPS-HPVSFITSALQ------GVFQHG----------- 354
Y Q+ + + Q F+ + + P + AL V G
Sbjct: 111 MYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 355 ------KVEIIANDQ------GNRTTPSYVAFTDTERLIGDAAKNQVAMN--------PN 394
KV+ + + N +P V ++L+ N + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 395 NTIFDAKR--LIGRKFEDA-----TVQADMKHW-PFEV------------VSD--GGKPK 432
++I R L + +E+ VQ + K W F + V+D
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 433 IKVEYKGEAKTFFPEEVSSMVL--TKMKETAEAYLGKTVSNAVITAYLGKTVSNAVIT-- 488
+ + T P+EV S++L + T + + + + +++ + + T
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWD 345
Query: 489 -VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFD 547
D + S LNVL EP + + +F
Sbjct: 346 NWKHVNCDKLTTIIESS-----LNVL----EPAEYRKMF--------------DRLSVFP 382
Query: 548 LGGGTFDVSI----LTI--EDGIFEGSGE-----RNVLIFDLGGGTFDVSILTIEEYFPL 596
I L++ D I + + +SI +I Y L
Sbjct: 383 P-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLEL 435
Query: 597 RSWGSGERNV---LI--------FDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLG---- 640
+ E + ++ FD D + H+G
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-----LDQYFYS--------HIGHHLK 482
Query: 641 ----GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEID 696
E F+ + D ++ +R TA AS I
Sbjct: 483 NIEHPERMT---------LFRMVFL-DFRFLEQKIRHDSTAW-----------NASGSIL 521
Query: 697 SLFEGVDFYTS-ITR--ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 753
+ + + FY I ++E L + + E + T
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---------------YTD 566
Query: 754 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 789
+ ++ L DEA+ A Q
Sbjct: 567 L--LRIALM------------AEDEAIFEEAHKQVQ 588
Score = 51.8 bits (123), Expect = 1e-06
Identities = 74/552 (13%), Positives = 162/552 (29%), Gaps = 133/552 (24%)
Query: 22 YSDNQPGVLIQVYEGER-AMTKDNNLLGKFELTSIPPAP---RGVPQIEVTFDIDANGIL 77
QP ++ ++Y +R + DN + K+ ++ + P + + ++ ++ +G+L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 78 ----NVTAIE--KSTGKENK-------ITITNDRGRLSKEDIERMVND-----AEKYKAE 119
A++ S + K + + N S E + M+ + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSR 216
Query: 120 DEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ---ILDKCNDVIKWLDANQ 176
+ + +S++ +L+ + +L +V +A
Sbjct: 217 SDHSSNIKLRIHSIQ------------AELRRLLKSKPYENCLLVLL---NV--Q-NAKA 258
Query: 177 LAEKEEFEHKQKELEAICNPIIT-------------KLYQGSGGAPVQPFTTTQV--LCS 221
F C ++T S T +V L
Sbjct: 259 W---NAFNLS-------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 222 K-LFTFHQFYPKSSCFLHNF--NIVGHSSDANFESFWKGGERKKSDKNST--DLFLEVLA 276
K L Q P+ + +I+ S + + W + DK +T + L VL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 277 NVIKRQKFLVTYLLKSFACGPEDYIFDKSASLTI-----------------VDQKFYRSQ 319
R+ F + +F SA + V K ++
Sbjct: 368 PAEYRKMF------DRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 320 QLKCFAQNFSHFTNFIPSHPVSFITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTER 379
++ + T IPS + H I+ + +T S
Sbjct: 416 LVE---KQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYLD 470
Query: 380 -----LIG---DAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 431
IG ++ M +F R + +K + + +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---- 526
Query: 432 KIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVIT-VP 490
+K YK + + + ++ +L K N + + Y + A++
Sbjct: 527 -LKF-YKP----YICD--NDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAEDE 577
Query: 491 AYFNDSQRQATK 502
A F ++ +Q +
Sbjct: 578 AIFEEAHKQVQR 589
Score = 42.5 bits (99), Expect = 7e-04
Identities = 60/448 (13%), Positives = 126/448 (28%), Gaps = 132/448 (29%)
Query: 62 VPQIEVTF--DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAE 119
+ E F + D + ++ + LSKE+I+ ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMP-----------------KSILSKEEIDHIIMSKDAVSGT 64
Query: 120 D-------EKQKAVISA--KNSLE-SYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVI 169
KQ+ ++ + L +Y F M +++ ++ Q ND
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 170 KWLDANQLAEKEEFEHKQKELEAICNPIITKLY--QGSGGAPVQPFTTTQVLCSKLFTFH 227
+ N + + +Q LE + + GSG + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSG---------KTWVALDVC--- 171
Query: 228 QFYPKSSCFLHNFNIVGHSSDANFESFW-KGGERKKSDKNSTDLFLEVLANVIKRQKFLV 286
Y +F I FW NS + LE+L L+
Sbjct: 172 LSYKVQCKM--DFKI-----------FWLNLKNC-----NSPETVLEMLQK-------LL 206
Query: 287 TYLLKSFACGPEDYIFDKSASLTIVDQKFYRSQQLKCFAQNFSHFTNFIPSHPVSFITSA 346
+ ++ + + L I + + LK + +
Sbjct: 207 YQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLK------------SKPYENCLLV-- 249
Query: 347 LQGVFQHGKVEIIANDQGNRT--TPSYVAFTDTERLIGDAAKNQVAMNPNNTIF---DAK 401
L V Q+ K A + + T + TD + A ++++ ++ + K
Sbjct: 250 LLNV-QNAKA-WNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVK 304
Query: 402 RL----IGRKFED-----------------ATVQADMKHWPF--EVVSDGGKPKIKV--- 435
L + + +D +++ + W V D I+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 436 -----EYKGEAKTF--FPEEV--SSMVL 454
EY+ FP +++L
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Score = 36.4 bits (83), Expect = 0.045
Identities = 56/355 (15%), Positives = 100/355 (28%), Gaps = 94/355 (26%)
Query: 10 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN--NLLGKF---ELTSIPP-----AP 59
+ T + + T + I + +T D +LL K+ +P P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 60 RGVPQIEVTFDIDANGILNV---------TAIEKS----TGKENK------------ITI 94
R + I + N T IE S E + I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 95 TNDR-----GRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEK- 148
+ K D+ +VN KY +++ K + S+ S +K +E+E
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK---ESTISIPSIYLELKVKLENEYA 444
Query: 149 LKDKISDAERTQILDKCNDVIK-WLD-------------ANQLAEKEEFEHKQKELEAIC 194
L I D +D+I +LD F + +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 195 NPIITKLYQGSGGAPVQPFTTTQVLCSKLFTFHQFYPKSSCFLHNFNIVGHSSDANFESF 254
I + + T Q L +FY + I + D +E
Sbjct: 505 QKIRHDSTAWNASGSILN--TLQQL--------KFYKP-----Y---ICDN--DPKYERL 544
Query: 255 WKGGERKKSDKNSTDL--FLEVLANVIKRQKFLVTYLLKSFACGPEDYIFDKSAS 307
+ FL + + K+ T LL+ ++ IF+++
Sbjct: 545 VN------------AILDFLPKIEENLICSKY--TDLLRIALMAEDEAIFEEAHK 585
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 54.3 bits (130), Expect = 9e-08
Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 34/196 (17%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E + D G GT + + V+ + + G DF R+ + +K +
Sbjct: 183 EGKYSVLDFGSGTTIIDTY---QNMKRVEEESFVINKGTIDFYKRIAS----HVSKKSEG 235
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
T + + L + + + I+ + F + L
Sbjct: 236 ASITPRMIEKGLEY------KQCKLNQKTVIDF--------------KDEFYKEQDSLIE 275
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
M E ++ + I I++ GG I L ++ K+ + +
Sbjct: 276 EVMSNFEITVGNI----NSIDRIIVTGGGANI--HFDSLSHYY-SDVFEKADDSQFSNVR 328
Query: 783 GAAVQAAILHGDKSEE 798
G +L +E
Sbjct: 329 GYEKLGELLKNKVEQE 344
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 50.1 bits (120), Expect = 2e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 718 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 774 INPDEAVAYGAAVQAAILHGDKSEE 798
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 44.4 bits (106), Expect = 9e-05
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP D +R+A D+G AG + + +I EP AAAI L+ V +G+ ++
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN--VEEPSGN-----MV 151
Query: 546 FDLGGGTFDVSIL 558
D+GGGT +V+++
Sbjct: 152 VDIGGGTTEVAVI 164
Score = 30.5 bits (70), Expect = 2.4
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 607 LIFDLGGGTFDVSILTIEDGIFEVKS--TAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
++ D+GGGT +V+++++ I +S AGD + D +V + + Y+
Sbjct: 150 MVVDIGGGTTEVAVISL-GSIVTWESIRIAGD------EMDEAIVQY----VRETYR 195
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 44.9 bits (107), Expect = 9e-05
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 718 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 774 INPDEAVAYGAAVQAAI 790
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 44.6 bits (106), Expect = 1e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 718 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 775
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 776 PDEAVAYGAAVQAAI 790
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 43.7 bits (103), Expect = 2e-04
Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 26/186 (13%)
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
DV R +R L+ D+G + + +L L G+
Sbjct: 170 LDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLA---VRVLTLSGK 224
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
DF + F + E KRT +T + + + L +
Sbjct: 225 DFTEAIARSFNLDLLA-------------------AEEVKRTYGMATLPTEDEELLLDFD 265
Query: 703 DFYTSITRARFEELNADLFRGTMEPVEKSLR--DAKMDKAQIHDIVLVGGSTRIPKVQKL 760
+ R + + + + +SL ++++A L+GG +++ + L
Sbjct: 266 AERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASL 325
Query: 761 LQDFFN 766
L D
Sbjct: 326 LTDTLG 331
Score = 31.0 bits (70), Expect = 1.8
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559
AGL + + +P A A +R L+ D+G + + +L
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEAR-----LAEEPDRVFLVLDIGAESTSLVLLR 209
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.004
Identities = 12/91 (13%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 107 ERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILD--- 163
+R+ + E + E+Q+ + ++ + ++ + + + + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDA------------ASKVMEQEWREKAKKDLEEWNQ 125
Query: 164 -KCNDVIKWLDANQLAEKEEFEHKQKELEAI 193
+ V K N++A+K F ++Q + + I
Sbjct: 126 RQSEQVEKNKINNRIADK-AF-YQQPDADII 154
Score = 35.5 bits (81), Expect = 0.038
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 97 DRGRLSKEDIE--RMVNDA--EKYKAEDEKQKAVI--SAKNSLESYCFNMKSTVEDEKLK 150
DR E I R ++ A + + AK LE + VE K+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 151 DKISDAERTQILDKCNDVI 169
++I+D Q D D+I
Sbjct: 138 NRIADKAFYQQPD--ADII 154
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 37.7 bits (88), Expect = 0.015
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 718 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG-STRIPKVQKLLQDFFNGKELNK 772
+++R +E R ++H++ GG + + ++ D +E+ K
Sbjct: 412 EEIYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT-NREI-K 469
Query: 773 SINPDEAVAYGAAVQAAILHGDKSEEVQDL 802
+ A GAA+ A++ G + +
Sbjct: 470 VAASKQTPALGAAMFASVAAGSEVGGYDSI 499
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 37.3 bits (87), Expect = 0.018
Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
+R V++ +LG + ++G+ + +G +
Sbjct: 205 DRGVVVVNLGYNFTGLIA--YKNGV--PIKISYVP-VGMKHVIK---------------- 243
Query: 663 DLTTNKRALRRLRTACERAKRT-----LSSSTQASIEIDSLFEGVDFYTS------ITRA 711
D+ L ER T + + I+ L T+ I A
Sbjct: 244 DV---SAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA 300
Query: 712 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 766
R E+ + VE + + +VL GG +IP++ +L + F
Sbjct: 301 RLREI-MSKSKKFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 353
Score = 31.9 bits (73), Expect = 0.81
Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERN--VLIFDLGGGTFDVSILTIEDGI 564
+ ++ + + A + E++ V++ +LG + ++G+
Sbjct: 180 TVKSPFQLKSSLVSTAEG---------VLTTPEKDRGVVVVNLGYNFTGLIA--YKNGV 227
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 36.4 bits (85), Expect = 0.036
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 718 ADLFRGTMEPVEKSLRDA--KMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
L+R +E V + R +D G TR ++ D + +
Sbjct: 373 GHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADVL-QRPVQLL 431
Query: 774 INPDEAVAYGAAVQAAI 790
N A GAA AAI
Sbjct: 432 AN-PLGSAVGAAWVAAI 447
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 35.8 bits (83), Expect = 0.058
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 718 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
A + T++ + R M++ I ++ GG T+ P + + G +
Sbjct: 415 ALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAM-LL 472
Query: 774 INPDEAVAYGAAVQAAI 790
EA+ G+A+ +
Sbjct: 473 PEESEAMLLGSAMMGTV 489
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 35.6 bits (81), Expect = 0.065
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 730 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL----LQDFFNGKELNKSINPDEA--VAYG 783
++LR + H I ++ + +P ++ L ++ + +++ A VAY
Sbjct: 43 EALRAQLASGEEPHGIPVMRERSTVPDSKRFILVELSNWAADSPVTLAVDVTNAYVVAYR 102
Query: 784 AAVQAAILHGDKSEEVQDLLLLDVTPLSLG-------IETAGGVSYSQSQLG 828
Q+ L D + + LL D + +E G + LG
Sbjct: 103 TGSQSFFLREDNPDPAIENLLPDTKRYTFPFSGSYTDLERVAGERREEILLG 154
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 34.9 bits (81), Expect = 0.11
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 718 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
++ R +E + +L D + + I GG + V++L + FN +
Sbjct: 366 PEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFN-VPIVTM 424
Query: 774 INPDEAVAYGAAVQAAI 790
++ A A
Sbjct: 425 KE-QQSGTLAAMFLARQ 440
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.31
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 14/43 (32%)
Query: 103 KEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 145
K+ ++++ + Y A+D SA +L +K+T+E
Sbjct: 19 KQALKKLQASLKLY-ADD-------SAP-ALA-----IKATME 47
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 32.9 bits (75), Expect = 0.34
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 744 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDL 802
++V+VGG R + + + E+ P A GAA+ A + +EV+++
Sbjct: 209 NVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI 266
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 29.7 bits (67), Expect = 0.85
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 577 DLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 636
G V + P +L+ +G + VS L + G + + G
Sbjct: 26 KAGNNMLLVGVHG-----PRTPC----EEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH 76
Query: 637 THLGG 641
H+ G
Sbjct: 77 EHIPG 81
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 30.6 bits (69), Expect = 0.91
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 598 SWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
+WG ER ++++ D F++ ++ R+
Sbjct: 71 AWGPEERIPYAEKFRPPNPSITVIDHGDR-FQI--RFDYGTSI--YYNKRI 116
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 31.9 bits (73), Expect = 1.0
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 696 DSLFEGVDFYTSITRARFEELN-------ADLFRGTMEPVEKSLRD-----AKMDKAQIH 743
D F D S +A E+ A+L R + + D A++
Sbjct: 336 DDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFS 395
Query: 744 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793
+ +VGG + + +L D G + P EA G +
Sbjct: 396 QLHIVGGGCQNTLLNQLCADAC-GIRV--IAGPVEASTLGNIGIQLMTLD 442
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 29.3 bits (66), Expect = 1.8
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVK 631
++ + G G +++ G + + D G+ VS + E G +EV
Sbjct: 33 SIWTREAGAGGLSIAV-----------EGPSKAEITFDDHKNGSCGVSYIAQEPGNYEVS 81
Query: 632 STAGDTHLGG 641
D H+
Sbjct: 82 IKFNDEHIPE 91
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB:
2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 28.9 bits (65), Expect = 1.9
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 577 DLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 636
+ G G +++ G + + D G+ V+ + E G +EV +
Sbjct: 30 EAGAGGLAIAVE-----------GPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNE 78
Query: 637 THLGG 641
H+
Sbjct: 79 EHIPD 83
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 2.0
Identities = 12/104 (11%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 96 NDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE-----KLK 150
R ++K +++++ K E + LE+ ++ ++++ L
Sbjct: 896 CYRRMMAKRELKKL-------KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Query: 151 DKISDAERTQILDKCNDVIKWLDANQLAEKE--EFEHKQKELEA 192
+K+++ E + + ++ +++E+E ++ L+
Sbjct: 949 EKMNNLE-ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 744 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788
D+V+ GG + V+ L++ G E+ S A GAA+ A
Sbjct: 211 DVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYA 254
>3rwx_A Hypothetical bacterial outer membrane protein; transmembrane
beta-barrel, structural genomics, joint center
structural genomics, JCSG; HET: MLY MSE; 2.40A
{Bacteroides fragilis}
Length = 261
Score = 30.2 bits (66), Expect = 2.7
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 495 DSQRQATKDSGTIAGL-NVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTF 553
++ T + IAG I N G + +D G G F
Sbjct: 2 NNDDDGTNXAQEIAGXYEGYSIGNCAMFTDYVMGEXSVATIVPNEDGTINVTYDSGSGEF 61
Query: 554 DVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
++ + + FEGSG+ + + D G D ++
Sbjct: 62 XLNNIXVTSXTFEGSGQVELSMNDXPAGAXDFTL 95
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 30.5 bits (67), Expect = 2.8
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 6/118 (5%)
Query: 224 FTFHQFYPKSSCFLHNFNIVGHSSDANFESFWKGGERKKSDKNSTDLFLEVLANVIKRQK 283
F + F H F + N +W +++ + L + +
Sbjct: 78 IRFENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPR 137
Query: 284 FLVTYLLKS------FACGPEDYIFDKSASLTIVDQKFYRSQQLKCFAQNFSHFTNFI 335
L L S + + + R A+ H + +
Sbjct: 138 MLDGSLFASQVDESLGRSTLAEQRAQFPYAYHFDADEVARYLSEYAIARGVRHVVDDV 195
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding
protein, cytoskeleton, complex; 2.32A {Homo sapiens}
SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 28.1 bits (63), Expect = 4.2
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 577 DLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 636
D G G ++I G + + D GT VS L + G + + +
Sbjct: 33 DAGEGGLSLAI-----------EGPSKAEISCTDNQDGTCSVSYLPVLPGDYSILVKYNE 81
Query: 637 THLGG 641
H+ G
Sbjct: 82 QHVPG 86
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
{Thalictrum flavum} PDB: 2vne_A*
Length = 201
Score = 29.2 bits (65), Expect = 4.3
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 422 FEVVSDGG-KPKIKVEY--KGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYL 478
K EY K E +++ L M + + + + +
Sbjct: 130 VVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLV---LEHK--SKSN 184
Query: 479 GKTVSNAVITV 489
+ A+ITV
Sbjct: 185 SDEIEAAIITV 195
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 28.2 bits (63), Expect = 4.6
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 577 DLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 636
D G G +++ G + ++ DL GT VS G++ V + D
Sbjct: 38 DAGYGGISLAVE-----------GPSKVDIQTEDLEDGTCKVSYFPTVPGVYIVSTKFAD 86
Query: 637 THLGG 641
H+ G
Sbjct: 87 EHVPG 91
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 29.4 bits (66), Expect = 5.0
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 778 EAVAYGAAVQAAILHGDKSEEVQDLLL---LDVTPLSLGIE 815
V + + +H + E ++ +L L ++
Sbjct: 269 IQVGVATYIMSK-VHKHREERIKKILSDTGFFNYVKGLNMK 308
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 105
Score = 27.8 bits (62), Expect = 5.1
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKS 632
V+ G G +++ G E + D G+ + G ++V
Sbjct: 34 VVTRGAGIGGLGITV-----------EGPSESKINCRDNKDGSCSAEYIPFAPGDYDVNI 82
Query: 633 TAGDTHLGG 641
T G H+ G
Sbjct: 83 TYGGAHIPG 91
>1oxw_A Patatin; alpha/beta class fold with approximately three layers;
2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Length = 373
Score = 29.1 bits (64), Expect = 6.0
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 8/129 (6%)
Query: 572 NVLIFDLGG--GTFDVSILT-IEEYFPLRSWGSGERNVLIFDLGGGTFDVSI----LTIE 624
VL D GG G +IL +E + R FD+ GGT + ++
Sbjct: 17 TVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTP 76
Query: 625 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK-KDLTTNKRALRRLRTACERAKR 683
+ + A + + ++ N Q KY K L + +
Sbjct: 77 NENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTE 136
Query: 684 TLSSSTQAS 692
+ SS
Sbjct: 137 VVISSFDIK 145
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 27.4 bits (61), Expect = 7.6
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 579 GGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 638
GG V+++ + ++ D GT+ +S E G++ V + H
Sbjct: 47 GGDNVQVAVVP-------KDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQH 99
Query: 639 LGG 641
+ G
Sbjct: 100 VQG 102
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic
structural genomics, protein structure initiative, CESG,
plant protein; 2.10A {Arabidopsis thaliana} SCOP:
d.129.3.1 PDB: 2q3q_A
Length = 122
Score = 27.6 bits (61), Expect = 8.1
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 143 TVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
T EK+ I D I+D+ K LD L KE
Sbjct: 86 TFHFEKVHKDIDDPHS--IIDESVKYFKKLDEAILNFKE 122
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 28.7 bits (64), Expect = 8.7
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGI 564
V+ E A +T G + I DLG G+ D +I+ E I
Sbjct: 383 LQTEVVVGGVEANMAIAG------ALTTPGC-AAPLAILDLGAGSTDAAIVNAEGQI 432
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,580,245
Number of extensions: 798532
Number of successful extensions: 2278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 116
Length of query: 840
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 738
Effective length of database: 3,853,851
Effective search space: 2844142038
Effective search space used: 2844142038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.5 bits)