RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7262
(840 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 275 bits (704), Expect = 4e-88
Identities = 174/190 (91%), Positives = 187/190 (98%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 782 YGAAVQAAIL 791
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 264 bits (675), Expect = 9e-84
Identities = 89/198 (44%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 602 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 657
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 658 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSITRARF 713
+ DL + A++RL+ A E+AK LSS+ Q + + + +TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 774 INPDEAVAYGAAVQAAIL 791
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 237 bits (605), Expect = 7e-74
Identities = 152/188 (80%), Positives = 166/188 (88%), Gaps = 13/188 (6%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRL
Sbjct: 11 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRL 70
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGR+F+DA VQ+DMKHWPF VV+D G+PK++VEYKGE K+F+PEEVSSMVLTKMKE AE
Sbjct: 71 IGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAE- 129
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
AYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAA
Sbjct: 130 ------------AYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 177
Query: 524 IAYGLDKK 531
IAYGLDKK
Sbjct: 178 IAYGLDKK 185
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 215 bits (548), Expect = 9e-66
Identities = 91/185 (49%), Positives = 120/185 (64%), Gaps = 19/185 (10%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK 407
+ ++ N +G+RTTPS +A+T D E L+G AK Q NP NT+F KRLIGR+
Sbjct: 15 AIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRR 74
Query: 408 FEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLG 466
F+D VQ D+ PF+++ +D G ++V+ + P ++S+ VL KMK+TAE YLG
Sbjct: 75 FQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQISAEVLKKMKKTAEDYLG 130
Query: 467 KTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAY 526
+ V+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AY
Sbjct: 131 EPVTEAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 527 GLDKK 531
GLDK
Sbjct: 178 GLDKG 182
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 190 bits (485), Expect = 3e-57
Identities = 121/134 (90%), Positives = 129/134 (96%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPR
Sbjct: 26 MTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPR 85
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAED
Sbjct: 86 GVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAED 145
Query: 121 EKQKAVISAKNSLE 134
EKQ+ +S+KNSLE
Sbjct: 146 EKQRDKVSSKNSLE 159
Score = 56.1 bits (135), Expect = 9e-10
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 796 SEEVQDLLLLDVTPLSLGIETAGGV 820
SE VQDLLLLDVTPLSLGIETAGGV
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGV 25
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 145 bits (368), Expect = 1e-41
Identities = 60/99 (60%), Positives = 72/99 (72%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 20 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPR 79
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 99
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 80 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
Score = 43.4 bits (102), Expect = 8e-06
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 803 LLLDVTPLSLGIETAGGV 820
LLLDVTPLSLGIET GGV
Sbjct: 2 LLLDVTPLSLGIETMGGV 19
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 135 bits (342), Expect = 1e-38
Identities = 56/81 (69%), Positives = 68/81 (83%)
Query: 129 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 188
+ LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QK
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 189 ELEAICNPIITKLYQGSGGAP 209
ELE +CNPIITKLYQ +GG P
Sbjct: 62 ELEKVCNPIITKLYQSAGGMP 82
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 129 bits (326), Expect = 5e-36
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
+ +I RNTTIP + Q FTT+ D Q + I V +GER + +D L +F L IP P
Sbjct: 17 VEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPA 76
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 99
G I VTF +DA+G+L+VTA+EKSTG E I + G
Sbjct: 77 GGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
Score = 40.4 bits (94), Expect = 9e-05
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 805 LDVTPLSLGIETAGGV 820
+DV PLSLG+ET GG+
Sbjct: 1 MDVIPLSLGLETMGGL 16
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 125 bits (313), Expect = 3e-33
Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++ D+GGGT +V+++++ + + G++ D +V + + ++ +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGE 60
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+ + + + ++ L G+ ++ E +
Sbjct: 61 RTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVV 115
Query: 723 GTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
+E V +L + I L GG + + + LLQ G + +S P A
Sbjct: 116 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTA 174
Query: 780 VAYGAAVQAAILHGDKSEEVQ 800
VA GA + + + +++Q
Sbjct: 175 VAKGAGMVLDKV--NILKKLQ 193
Score = 47.6 bits (112), Expect = 1e-06
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 540 ERNVLIFDLGGGTFDVSILTIEDGIFEGS 568
++ D+GGGT +V+++++ + S
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTWES 34
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 105 bits (263), Expect = 6e-27
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
SS A I + I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 780
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 781 AYGAAVQA 788
G +
Sbjct: 155 VNGMYLIG 162
Score = 40.6 bits (94), Expect = 2e-04
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 540 ERNVLIFDLGGGTFDVSILTIEDGIFE 566
++LI DLGG T D+S + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSG 30
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 93.3 bits (232), Expect = 2e-23
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160
L++++I++MV DAE D K + ++ +N + + + VE+ DK+ ++T
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 58
Query: 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPI 197
I + L +K E K +EL + +
Sbjct: 59 IESALTALETALKGE---DKAAIEAKMQELAQVSQKL 92
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 89.4 bits (221), Expect = 2e-21
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
DL + + + ++ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 781
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 782 YG 783
G
Sbjct: 152 LG 153
Score = 37.8 bits (87), Expect = 0.001
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 540 ERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFD 584
++ D+G T DV + + D ++ +G G
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSL---QIGVGDAI 46
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 83.8 bits (207), Expect = 6e-20
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160
L+ +I M+ D+ Y +D K + + K ++ + + +S AER
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQV 58
Query: 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 205
I D + + + + + E K ++ + S
Sbjct: 59 IDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 79.8 bits (196), Expect = 3e-18
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 389 VAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEE 448
V + + + +I + + K +
Sbjct: 14 VFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRD--GVIADYT 71
Query: 449 VSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIA 508
V+ ++L A+ + VI VP D +R+A D+G A
Sbjct: 72 VALVMLRYFINKAKGGMNLFKPRVVIG-------------VPIGITDVERRAILDAGLEA 118
Query: 509 GLNVLRIINEPTAAAIAYGLD 529
G + + +I EP AAAI G +
Sbjct: 119 GASKVFLIEEPMAAAI--GSN 137
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 43.0 bits (100), Expect = 4e-05
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+ T+ A+ E R L +T + L I AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 766
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
Score = 27.6 bits (60), Expect = 5.0
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 535 TAGSGERNVLIFDLGGGTFDVSIL 558
T +R V++ +LG +
Sbjct: 1 TTPEKDRGVVVVNLGYNFTGLIAY 24
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 34.8 bits (79), Expect = 0.028
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
I++ D+ G V + + D+V+ GG + V+ L++ G
Sbjct: 174 ISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-G 232
Query: 768 KELNKSINPDEAVAYGAAVQAA 789
E+ S A GAA+ A
Sbjct: 233 VEIKTSPLAQYNGALGAALYAY 254
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium
laminosum [TaxId: 32059]}
Length = 62
Score = 28.9 bits (65), Expect = 0.38
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 79 VTAIEKSTGKENKITITNDRGRLSKEDIER----MVNDAEKYKAED 120
+TAI K+ ++ I + G + I +V++ E+ A
Sbjct: 11 ITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGA 56
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 31.2 bits (70), Expect = 0.48
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 84 KSTGKENKI-TITNDRG--RLSKEDIERMVNDAEKYKAEDEKQK 124
+S GK ++ + D+ L+ E+IE+ V + EK K E+EK+K
Sbjct: 199 QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKK 242
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/63 (15%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 100 RLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED-EKLKDKISDAER 158
+L+ + E+++++ ++ + + ++ + + L M+ E+ E ++++ D R
Sbjct: 436 KLTGLEHEKLLDEYKELLDQIAELLRILGSADRL------MEVIREELELVREQFGDKRR 489
Query: 159 TQI 161
T+I
Sbjct: 490 TEI 492
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 28.4 bits (63), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 511 NVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLG 549
N+LR+ E Y L +V S G R+ ++ D G
Sbjct: 15 NLLRLPAEFGCPVWVYVLITQVRSVKQMGSRHFVLVDAG 53
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 29.1 bits (64), Expect = 2.4
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 514 RIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSIL 558
R + EP+ A G+ K + GER I L G + L
Sbjct: 278 RAVAEPSGALALAGMKKYIALHNIRGERLAHI--LSGANVNFHGL 320
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 25.6 bits (57), Expect = 3.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 90 NKITITNDRGRLSKEDIERMVN 111
+ T GR+ KEDI+ +
Sbjct: 20 RLVQGTGKNGRVLKEDIDAFLA 41
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga
maritima [TaxId: 2336]}
Length = 152
Score = 27.5 bits (60), Expect = 3.9
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 143
S E+I +++ +++ K E+ + K + F +ST
Sbjct: 16 FSPEEIRYLLDISKQVKMENRSKLRTERFKGMTLAMIFEKRST 58
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 28.3 bits (62), Expect = 4.1
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 105 DIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDK 164
D + M A+ ++ + V+SA T L + + ER + LD
Sbjct: 14 DFDAMNRSADIVLSDANVRLVVLSAS---------AGITNLLVALAEGLEPGERFEKLDA 64
Query: 165 CNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 205
++ + E ++ LE I S
Sbjct: 65 IRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATS 105
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 27.5 bits (60), Expect = 4.2
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 143
+ ++ ++ A K KA+ + K + F ST
Sbjct: 14 FTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDST 56
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis
[TaxId: 1423]}
Length = 112
Score = 27.1 bits (60), Expect = 4.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 98 RGRLSKEDIERMVNDAEKYKAEDEKQKA 125
LSKE+ E ++ ++ E QKA
Sbjct: 34 DKGLSKEEGEAVMRICDELSEELATQKA 61
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 27.4 bits (60), Expect = 4.5
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKN 131
S++++E + +KY + ++S K
Sbjct: 10 FSRDELEDIFALTDKYSKNLNDTRKILSGKT 40
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 28.3 bits (62), Expect = 4.6
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 147 EKLKDKISDAERTQILDK---CNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203
+ L + + A + ++ +D + W+D +K EF ++ E I N +
Sbjct: 19 DYLSEFVKAA-HHMLHERKGPGSDFLGWVDWPIRYDKNEFSRIKQAAERIRNHSDALVVI 77
Query: 204 GSGGAPVQPFTTTQVLCSKLFTFHQFYPKSSCFLHN 239
G GG+ + + L + N
Sbjct: 78 GIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQN 113
>gi|3308969|dbj|BAA31557.1|(36-183:257) macrophage-colony
stimulating factor alpha [Bos taurus]
gi|33114043|gb|AAP94638.1| colony-stimulating factor-1
splice variant [Bos taurus] E=5e-72 s/c=1.84 id=87%
cov=101%
Length = 148
Score = 27.1 bits (60), Expect = 5.0
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 130 KNSLESYCFNMKSTVEDEKLKDKIS--DAERTQILDKCNDVIKWLDANQLAEKEEFEHKQ 187
+ +E+ C V+ E+L D + + D D +++ D A+ +
Sbjct: 21 DSQMETSCQISFEFVDQEQLDDPVCYLKKAFLLVQDIMEDTMRFKDNTPNAKVIV---QL 77
Query: 188 KELEAICNPIITKLYQGSGGAPVQPFTTT 216
+EL T Y A V+ F T
Sbjct: 78 QELSLRLKSCFTMDYDEQDKACVRTFHET 106
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 27.5 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 608 IFDLGGGTFDVSILTIEDGIFEVK-STAGD-------THLGGEDFD 645
I DLG G+ D SI+ + I + AGD LG ED
Sbjct: 8 ILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRY 53
>d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4
[TaxId: 10843]}
Length = 417
Score = 27.9 bits (62), Expect = 5.4
Identities = 24/162 (14%), Positives = 43/162 (26%), Gaps = 22/162 (13%)
Query: 224 FTFHQFYPKSSCFLHNFNIVGHSSDANFE--SFWKGGERKKSDKNSTDLFLEVLANVIKR 281
+ ++ F + + G + FW G D + TD L R
Sbjct: 201 YFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASG----YDVDGTDQ--SSLGQFSGR 254
Query: 282 QKFLVTYLLKSFACGPEDYIFDKS---ASLTIVDQKFYRSQQLKCFAQNFSHFTNFIPSH 338
+ + + F I + T + Y + + + + +
Sbjct: 255 VQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENLTYTDIACDPALMANL 314
Query: 339 PV------SFITSALQGVFQHGKVEIIANDQGNRTTPSYVAF 374
P F S+ K+ RT P VAF
Sbjct: 315 PPREVSLKEFFHSSPDSAK--FKIAEGQW---YRTQPDRVAF 351
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 27.1 bits (59), Expect = 6.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 143
SKEDIE ++ AE+ + E +++ + AK + + F ST
Sbjct: 13 FSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPST 55
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.6 bits (58), Expect = 7.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQ 123
LS++D+ ++ A K KA + +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 26.3 bits (58), Expect = 8.0
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAE 119
+IE + ENK+ + + + ++++ + +
Sbjct: 45 SIECKSTWENKVKV-------KEHQVRKLLDFLSMFTMK 76
>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis
cinerea) [TaxId: 5346]}
Length = 150
Score = 26.8 bits (59), Expect = 8.0
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 13/110 (11%)
Query: 547 DLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT--------FDVSILTIEEYFPLRS 598
L S+ I F G V F G +++ +
Sbjct: 12 KLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGA 71
Query: 599 WGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
WG ER ++++ D F++ ++ R+
Sbjct: 72 WGPEERIPYAEKFRPPNPSITVIDHGDR-FQI--RFDYGTSI--YYNKRI 116
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 26.7 bits (59), Expect = 9.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 608 IFDLGGGTFDVSILTIEDGIFEVK-STAGD-------THLGGEDFD 645
I DLG G+ D +I+ E I V + AG+ T LG ED
Sbjct: 8 ILDLGAGSTDAAIVNAEGQITAVHLAGAGNMVSLLIKTELGLEDLS 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,017,523
Number of extensions: 146050
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 53
Length of query: 840
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 747
Effective length of database: 1,130,706
Effective search space: 844637382
Effective search space used: 844637382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)