Query psy7264
Match_columns 206
No_of_seqs 126 out of 1129
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:13:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00119 HECTc Domain Homolo 100.0 9.4E-49 2E-53 347.5 16.0 167 2-206 167-336 (336)
2 COG5021 HUL4 Ubiquitin-protein 100.0 9.9E-49 2.1E-53 377.5 13.8 167 2-206 698-872 (872)
3 cd00078 HECTc HECT domain; C-t 100.0 3.9E-48 8.5E-53 345.1 15.4 149 2-160 185-336 (352)
4 PF00632 HECT: HECT-domain (ub 100.0 2.6E-47 5.7E-52 334.1 13.6 168 2-206 145-317 (317)
5 KOG0939|consensus 100.0 8.1E-45 1.8E-49 336.8 11.6 168 2-206 546-720 (720)
6 KOG0941|consensus 100.0 5.5E-43 1.2E-47 330.0 12.6 165 2-206 683-850 (850)
7 KOG0942|consensus 100.0 4E-43 8.7E-48 332.3 8.7 167 2-206 831-1001(1001)
8 KOG0170|consensus 100.0 2.3E-40 5E-45 298.8 13.0 167 3-206 446-621 (621)
9 KOG4427|consensus 100.0 2.3E-37 5E-42 288.6 12.4 167 2-206 901-1096(1096)
10 KOG0943|consensus 99.9 1.9E-27 4.2E-32 229.1 9.0 147 3-160 2845-2998(3015)
11 KOG0940|consensus 99.9 3E-26 6.5E-31 204.2 9.8 158 2-170 195-358 (358)
12 PHA02681 ORF089 virion membran 40.4 20 0.00044 25.8 1.7 19 97-115 50-68 (92)
13 PF13257 DUF4048: Domain of un 32.9 36 0.00079 29.5 2.4 35 32-76 86-122 (253)
14 PF12449 DUF3684: Protein of u 32.5 1.1E+02 0.0023 32.0 6.0 110 44-169 475-601 (1093)
15 PHA02568 J baseplate assembly 31.6 51 0.0011 29.1 3.2 64 99-172 72-135 (300)
16 PF02758 PYRIN: PAAD/DAPIN/Pyr 31.0 63 0.0014 22.6 3.1 21 92-112 5-25 (83)
17 PF13945 NST1: Salt tolerance 28.0 50 0.0011 27.4 2.4 21 86-109 104-124 (190)
18 PF03368 Dicer_dimer: Dicer di 26.3 41 0.00088 24.1 1.4 50 114-173 9-69 (90)
19 TIGR01215 minE cell division t 24.4 1.9E+02 0.0042 20.4 4.6 38 156-197 13-50 (81)
20 PRK00296 minE cell division to 24.4 2.1E+02 0.0046 20.4 4.9 39 156-197 13-51 (86)
21 PRK13989 cell division topolog 24.3 2.1E+02 0.0046 20.4 4.8 40 156-197 13-52 (84)
22 PRK09706 transcriptional repre 20.3 2.3E+02 0.0049 21.4 4.7 25 88-112 88-112 (135)
23 PF08937 DUF1863: MTH538 TIR-l 20.0 71 0.0015 24.0 1.7 43 158-200 57-100 (130)
No 1
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=9.4e-49 Score=347.52 Aligned_cols=167 Identities=40% Similarity=0.716 Sum_probs=157.5
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceec
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVA 80 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~ 80 (206)
.+|+.+||+++++++ +...+..|+ |||+||++|+|.+.+++|+|+||+.++||.++||+++|++++.|+
T Consensus 167 ~~N~~eYv~~~~~~~----------l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~ 236 (336)
T smart00119 167 EENKKEYVHLVIEYR----------LNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYK 236 (336)
T ss_pred HHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEc
Confidence 368899999999999 778888888 899999999999999999999999999999999999999999998
Q ss_pred -CCCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC-CCCCCceeccccCeeecCCCCCH
Q psy7264 81 -SSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ-AHNSLPVAHTCSNQLCLPTYDNY 158 (206)
Q Consensus 81 -g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~-~~~~LP~A~TCf~~L~LP~Yss~ 158 (206)
|++++++.|+|||+++++||++||++||+|+||++|+|++|++.+.|+|+|...+ ++++||+||||||+|+||.|+|+
T Consensus 237 ~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~ 316 (336)
T smart00119 237 GGYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSDDDRLPTAHTCFNRLKLPPYSSK 316 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCCceEEEECCCCCCCCCccccccCcCcCCCCCCH
Confidence 5678899999999999999999999999999999999999999998999998876 78999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 159 EKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 159 e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
|+ |++||.+||++| +||||+
T Consensus 317 e~---------------------------l~~kL~~AI~~~-~gF~l~ 336 (336)
T smart00119 317 EI---------------------------LREKLLLAINEG-KGFGLS 336 (336)
T ss_pred HH---------------------------HHHHHHHHHHcC-CCCCCC
Confidence 99 889999999885 899985
No 2
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-49 Score=377.54 Aligned_cols=167 Identities=36% Similarity=0.619 Sum_probs=160.6
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCC-CcHHHHHhhcee
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSD-YSIADLLAHHVV 79 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~-i~~e~l~~~~~y 79 (206)
++|+.+||.+++.++ +...+++|. ||..||.+|||.+++.+|+++||+.|+||.++ ||+++|+.+|.|
T Consensus 698 ~~Nk~eYV~~vvdy~----------L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y 767 (872)
T COG5021 698 NENKKEYVKKVVDYK----------LNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAY 767 (872)
T ss_pred chHHHHHHHHHHHHH----------hhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccc
Confidence 589999999999999 999999999 99999999999999999999999999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCC-----ceeEeccC-CCCCCceeccccCeeecC
Q psy7264 80 ASSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYIQ-AHNSLPVAHTCSNQLCLP 153 (206)
Q Consensus 80 ~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~-----~i~i~~~~-~~~~LP~A~TCf~~L~LP 153 (206)
.||.+++++|.|||+++++|+.|+|++||||+||++|+|++||+.+++ +|+|+..+ ++++||+||||||+|+||
T Consensus 768 ~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP 847 (872)
T COG5021 768 HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLP 847 (872)
T ss_pred cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCC
Confidence 999999999999999999999999999999999999999999999998 78888776 677799999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 154 TYDNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 154 ~Yss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
+|+|||+ |++||.+||+||. |||++
T Consensus 848 ~YsSke~---------------------------Lr~kL~~AI~Eg~-GFg~~ 872 (872)
T COG5021 848 EYSSKEK---------------------------LRSKLLTAINEGA-GFGLL 872 (872)
T ss_pred CCCCHHH---------------------------HHHHHHHHHHhcc-CcCcC
Confidence 9999999 9999999999965 99985
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=3.9e-48 Score=345.09 Aligned_cols=149 Identities=39% Similarity=0.708 Sum_probs=141.9
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceec
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVA 80 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~ 80 (206)
.+|+.+||+++++++ +...+.+|+ |||+||++|+|.+.+++|+|+||+.++||.++||+++|++++.|+
T Consensus 185 ~~N~~eYv~~~~~~~----------l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~ 254 (352)
T cd00078 185 NENKEEYVDLYVDYR----------LNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYK 254 (352)
T ss_pred HHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEec
Confidence 368899999999999 777888888 899999999999999999999999999999999999999999999
Q ss_pred CCCC-CchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC-CCCCCceeccccCeeecCCCCCH
Q psy7264 81 SSFP-HPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ-AHNSLPVAHTCSNQLCLPTYDNY 158 (206)
Q Consensus 81 g~~~-~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~-~~~~LP~A~TCf~~L~LP~Yss~ 158 (206)
|+.. ++++|+|||+++++||++||++||+|+||++|+|++|++++.++|+|...+ ++++||+||||||+|+||.|+|+
T Consensus 255 ~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~~~~~LP~a~TCf~~L~LP~Yss~ 334 (352)
T cd00078 255 GGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGSPDDRLPTAHTCFNLLKLPPYSSK 334 (352)
T ss_pred CCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCCCCCCCCcchhhhccccCCCCCCH
Confidence 8865 899999999999999999999999999999999999999999999999877 48999999999999999999999
Q ss_pred HH
Q psy7264 159 EK 160 (206)
Q Consensus 159 e~ 160 (206)
|+
T Consensus 335 e~ 336 (352)
T cd00078 335 EI 336 (352)
T ss_pred HH
Confidence 99
No 4
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=2.6e-47 Score=334.08 Aligned_cols=168 Identities=38% Similarity=0.714 Sum_probs=143.2
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCC-CcHHHHHhhcee
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSD-YSIADLLAHHVV 79 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~-i~~e~l~~~~~y 79 (206)
.+|+.+||+++++++ +...+.+|+ |||+||.+|+|...+++|+|+||+.++||.++ ||+++|++++.|
T Consensus 145 ~~N~~eyv~~~~~~~----------l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~ 214 (317)
T PF00632_consen 145 NENKEEYVRLLAQYR----------LNESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRY 214 (317)
T ss_dssp TTTHHHHHHHHHHHH----------HTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEE
T ss_pred hhhhhHHHHhhhhhh----------cccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccc
Confidence 479999999999999 777788887 89999999999999999999999999999999 999999999999
Q ss_pred c-CCCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccCC--CCCCceeccccCeeecCCCC
Q psy7264 80 A-SSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQA--HNSLPVAHTCSNQLCLPTYD 156 (206)
Q Consensus 80 ~-g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~~--~~~LP~A~TCf~~L~LP~Ys 156 (206)
+ |++++++.++|||+++++||++||++||+|+||++++|++|++.+.|+|+|...+. +++||+||||||+|+||.|+
T Consensus 215 ~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~~~~~~~~~LP~a~TCf~~L~LP~Ys 294 (317)
T PF00632_consen 215 EGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQFSDDSPDDRLPTAHTCFNTLKLPRYS 294 (317)
T ss_dssp ESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEEESC-STTS--EEEGGGTEEEEEE-S
T ss_pred hhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEeecCCCccccCceecCcCCEEECCCCC
Confidence 9 66788999999999999999999999999999999999999998888999988764 78999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 157 NYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 157 s~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
|+|+ |++||..||++|++||||+
T Consensus 295 s~e~---------------------------l~~kL~~Ai~~~~~gF~~s 317 (317)
T PF00632_consen 295 SKEI---------------------------LREKLLYAIENGQEGFGLS 317 (317)
T ss_dssp SHHH---------------------------HHHHHHHHHHHT-------
T ss_pred CHHH---------------------------HHHHHHHHHHcCCCCcCcC
Confidence 9999 8888888888877999985
No 5
>KOG0939|consensus
Probab=100.00 E-value=8.1e-45 Score=336.78 Aligned_cols=168 Identities=40% Similarity=0.676 Sum_probs=162.3
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceec
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVA 80 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~ 80 (206)
.+|+.+||.++.++| +.+.+.+|+ ||.+||..++|..++++|+..||+.|+||.++||++||+.+++|.
T Consensus 546 ~~nK~~yv~lv~q~r----------L~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~ 615 (720)
T KOG0939|consen 546 EANKQEYVQLVTQYR----------LTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYL 615 (720)
T ss_pred cccHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhh
Confidence 478999999999999 899989999 899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCC-----ceeEeccC-CCCCCceeccccCeeecCC
Q psy7264 81 SSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYIQ-AHNSLPVAHTCSNQLCLPT 154 (206)
Q Consensus 81 g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~-----~i~i~~~~-~~~~LP~A~TCf~~L~LP~ 154 (206)
|+...+++|+|||++|+.+++++|.+||+|+||++++|++||..+.+ +|+|+..+ ..++||+||||||+|+||.
T Consensus 616 ~~~~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~ 695 (720)
T KOG0939|consen 616 GYTKASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPGSTDRLPTAHTCFNQLFLPH 695 (720)
T ss_pred cccccchHHHHHHHHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCCCCCCCcchhhhhhhhcCcc
Confidence 99988889999999999999999999999999999999999999986 89999888 8899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 155 YDNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 155 Yss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
|.|||. ++++|..||+||++|||++
T Consensus 696 Y~Sye~---------------------------l~~~LllAi~E~segfg~a 720 (720)
T KOG0939|consen 696 YASYEQ---------------------------LRESLLLAINEGSEGFGMA 720 (720)
T ss_pred hhhHHH---------------------------HHHHHHHHHHhhhhccCcC
Confidence 999999 9999999999999999986
No 6
>KOG0941|consensus
Probab=100.00 E-value=5.5e-43 Score=330.01 Aligned_cols=165 Identities=36% Similarity=0.618 Sum_probs=155.3
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceec
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVA 80 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~ 80 (206)
++|+.+||.+++++- +...+++|. ||++||++|+..+.+.+|.|+||+.++||+.++||+.+++.+.|+
T Consensus 683 ~~Nr~efV~~Yvd~~----------~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ 752 (850)
T KOG0941|consen 683 NENRREFVNLYVDYI----------LNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYD 752 (850)
T ss_pred cccHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceec
Confidence 589999999999997 788889999 899999999999999999999999999999999999999999999
Q ss_pred CC-CCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC-CCCCCceeccccCeeecCCCCCH
Q psy7264 81 SS-FPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ-AHNSLPVAHTCSNQLCLPTYDNY 158 (206)
Q Consensus 81 g~-~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~-~~~~LP~A~TCf~~L~LP~Yss~ 158 (206)
|+ +++|++|+|||++++.|+.++|++||+|+|||+|+|++|++.++ +.|+..+ +.+.||+||||||.|.||.|+|+
T Consensus 753 ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l~--~~i~~~~~~~~~lP~shTCfN~L~Lp~Yssk 830 (850)
T KOG0941|consen 753 GGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKLK--LVIQKNGPDEDRLPVSHTCFNVLLLPEYSSK 830 (850)
T ss_pred CcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhce--EEEecCCCCcccCcchhhhhhhhhccccCcH
Confidence 85 67899999999999999999999999999999999999999884 6666554 47899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 159 EKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 159 e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
|. |++||++||++ ++|||++
T Consensus 831 ek---------------------------L~~kL~~Ai~~-~~GF~l~ 850 (850)
T KOG0941|consen 831 EK---------------------------LEEKLLTAINN-TEGFGLL 850 (850)
T ss_pred HH---------------------------HHHHHHHHHHh-ccCcCCC
Confidence 99 99999999998 9999985
No 7
>KOG0942|consensus
Probab=100.00 E-value=4e-43 Score=332.33 Aligned_cols=167 Identities=28% Similarity=0.488 Sum_probs=158.5
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCC-CCcHHHHHhhcee
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTS-DYSIADLLAHHVV 79 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~-~i~~e~l~~~~~y 79 (206)
+||+++||+++.+++ +...+.+|. |||+||..|||.+|+.+|.+.||+.|++|.+ .||.+||+++|+|
T Consensus 831 neNvi~YihLVsnY~----------LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY 900 (1001)
T KOG0942|consen 831 NENVIEYIHLVSNYK----------LNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEY 900 (1001)
T ss_pred chhhhhhhHHhhhhH----------HHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccc
Confidence 699999999999999 888888888 9999999999999999999999999999996 4999999999999
Q ss_pred cC-CCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC-CCCCCceeccccCeeecCCCCC
Q psy7264 80 AS-SFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ-AHNSLPVAHTCSNQLCLPTYDN 157 (206)
Q Consensus 80 ~g-~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~-~~~~LP~A~TCf~~L~LP~Yss 157 (206)
.| |+++|++|.+||+|+++|+.|+|++|||||||++|.|+-||+.+.|+|.|...+ ++++||||+||.|.|+||+|++
T Consensus 901 ~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P~FcI~n~gsd~~RLPTASTCmNLLKLP~y~~ 980 (1001)
T KOG0942|consen 901 AGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAGSDDDRLPTASTCMNLLKLPPYSN 980 (1001)
T ss_pred cCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCccceeeeCCCccccCCcHHHHHHHhcCCCccc
Confidence 64 579999999999999999999999999999999999999999999999999877 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 158 YEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 158 ~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
++. ||+||.+||+.| .||+|+
T Consensus 981 kt~---------------------------LreKLlYAI~sg-AGFeLS 1001 (1001)
T KOG0942|consen 981 KTL---------------------------LREKLLYAINSG-AGFELS 1001 (1001)
T ss_pred HHH---------------------------HHHHHHHHHhcc-cCCCCC
Confidence 999 899999999884 999985
No 8
>KOG0170|consensus
Probab=100.00 E-value=2.3e-40 Score=298.84 Aligned_cols=167 Identities=31% Similarity=0.487 Sum_probs=158.6
Q ss_pred chHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCC-CCcHHHHHhhceec
Q psy7264 3 ERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTS-DYSIADLLAHHVVA 80 (206)
Q Consensus 3 ~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~-~i~~e~l~~~~~y~ 80 (206)
.|..+|+..++.+. +.+.+.+|+ |||+||.+|+|-+-|..|+|+||..++||.. .++++.+.+|..++
T Consensus 446 ~NleEYi~~VId~t----------v~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~D 515 (621)
T KOG0170|consen 446 SNLEEYIHGVIDAT----------VGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKAD 515 (621)
T ss_pred ccHHHHHHHHHHHH----------HhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccc
Confidence 58899999999999 899999999 9999999999999999999999999999985 49999999999998
Q ss_pred -CCCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC------CCCCCceeccccCeeecC
Q psy7264 81 -SSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ------AHNSLPVAHTCSNQLCLP 153 (206)
Q Consensus 81 -g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~------~~~~LP~A~TCf~~L~LP 153 (206)
||+.+++.|+.|.+++.+|+.+|||.||||+|||+|||+|||+.++|++||++.- +++.||+++||-|.|+||
T Consensus 516 HGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP 595 (621)
T KOG0170|consen 516 HGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLP 595 (621)
T ss_pred cCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCC
Confidence 5578899999999999999999999999999999999999999999999998753 688999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 154 TYDNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 154 ~Yss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
+|+|+|+ |++||.+||+||+..|+|+
T Consensus 596 ~YSSkEi---------------------------M~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 596 PYSSKEI---------------------------MRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred CCchHHH---------------------------HHHHHHHHHHccccccccC
Confidence 9999999 9999999999999999985
No 9
>KOG4427|consensus
Probab=100.00 E-value=2.3e-37 Score=288.62 Aligned_cols=167 Identities=31% Similarity=0.521 Sum_probs=151.7
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCC-CCCcHHHHHhhcee
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGT-SDYSIADLLAHHVV 79 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~-~~i~~e~l~~~~~y 79 (206)
+||+++||+++++++ +...+..|- ||-+||.+++.++|+++|+|.||+.|++|. .+||++||++|+.|
T Consensus 901 neNKi~YIH~MA~~r----------mnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y 970 (1096)
T KOG4427|consen 901 NENKIQYIHAMAHFR----------MNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKY 970 (1096)
T ss_pred ccchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEe
Confidence 799999999999999 677666666 899999999999999999999999999998 57999999999999
Q ss_pred cCC-CCCchHHHHHHHHHhh-CCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC----------------------
Q psy7264 80 ASS-FPHPKLLQWFWTALQN-FTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ---------------------- 135 (206)
Q Consensus 80 ~g~-~~~~~~i~~Fw~vl~~-~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~---------------------- 135 (206)
-|+ ..+|++|.|||+|+.. |++|||+.||+|+|.++|.|+-||+-++|+|.|....
T Consensus 971 ~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiR 1050 (1096)
T KOG4427|consen 971 YGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIR 1050 (1096)
T ss_pred ecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhh
Confidence 876 5679999999999998 9999999999999999999999999999998887311
Q ss_pred ---CCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhcCCcccccC
Q psy7264 136 ---AHNSLPVAHTCSNQLCLPTYDNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206 (206)
Q Consensus 136 ---~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~~~~~gf~~~ 206 (206)
+..+||+|+||||.|+||.|+-+.+ |++||++||.. +.||.|+
T Consensus 1051 Kg~~~~RLPTaSTCfNlLKLPnY~kkSt---------------------------lreKLrYAIss-ntGFELS 1096 (1096)
T KOG4427|consen 1051 KGQPVERLPTASTCFNLLKLPNYKKKST---------------------------LREKLRYAISS-NTGFELS 1096 (1096)
T ss_pred cCCccccCCchhhHHHhhhCCCcchhHH---------------------------HHHHHHHHhhc-CCCcccC
Confidence 4579999999999999999999999 88888888877 6888874
No 10
>KOG0943|consensus
Probab=99.94 E-value=1.9e-27 Score=229.11 Aligned_cols=147 Identities=25% Similarity=0.477 Sum_probs=128.6
Q ss_pred chHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceecC
Q psy7264 3 ERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVAS 81 (206)
Q Consensus 3 ~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~g 81 (206)
.|+++||.+++.++ +.......+ |||+|+.+|+|.+.|.-+++++++.++||..++++..|+.+|.|..
T Consensus 2845 dNViEYV~KYAE~~----------llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlD 2914 (3015)
T KOG0943|consen 2845 DNVIEYVRKYAEHR----------LLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLD 2914 (3015)
T ss_pred hhHHHHHHHHHHhh----------hheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccc
Confidence 68999999999999 666666666 9999999999999999999999999999999999999999998864
Q ss_pred CC-CC----chHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccC-CCCCCceeccccCeeecCCC
Q psy7264 82 SF-PH----PKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQ-AHNSLPVAHTCSNQLCLPTY 155 (206)
Q Consensus 82 ~~-~~----~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~-~~~~LP~A~TCf~~L~LP~Y 155 (206)
-+ .+ -+..+|||+|++.||..+|+.+..|||||+.||..| .++.+.-.|...+ ++..||+|+||.++|..|.|
T Consensus 2915 ES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~-e~~p~~aSimiRP~dD~fLPTANTCISRLYVPlY 2993 (3015)
T KOG0943|consen 2915 ESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAE-EGFPPMASIMIRPPDDQFLPTANTCISRLYVPLY 2993 (3015)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccc-cCCCCCCceeecCcccccCCcccchhhheeeech
Confidence 43 12 567899999999999999999999999999999986 4444444554443 67899999999999999999
Q ss_pred CCHHH
Q psy7264 156 DNYEK 160 (206)
Q Consensus 156 ss~e~ 160 (206)
+|+++
T Consensus 2994 SSKqi 2998 (3015)
T KOG0943|consen 2994 SSKQI 2998 (3015)
T ss_pred hhHHH
Confidence 99999
No 11
>KOG0940|consensus
Probab=99.93 E-value=3e-26 Score=204.16 Aligned_cols=158 Identities=30% Similarity=0.533 Sum_probs=144.8
Q ss_pred CchHHHHHHHHHhhcCCCCCCCcceeeccchhHH-HHHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceec
Q psy7264 2 SERHVSYVAYLIHMNGTPLSRPRKVIVNLCPKQV-IIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVA 80 (206)
Q Consensus 2 ~~~~~~Yv~~~~~~~~~~~~~~~~v~~~~~~kq~-A~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~ 80 (206)
++|..+||.++.+ + ....+.+|. ++.+||..++|...+..|...|++.++||..++|+++|++++.|.
T Consensus 195 ~~n~~~yi~~l~~-r----------~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~ 263 (358)
T KOG0940|consen 195 EENKKEYIMLLQN-R----------FERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYR 263 (358)
T ss_pred cccHHHHHHHHHH-H----------HHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhcccc
Confidence 4788889999988 4 455566666 899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhhCCHHHHHhhhhhccCCCCCCCCCCCCCCC-----ceeEeccCCCCCCceeccccCeeecCCC
Q psy7264 81 SSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYIQAHNSLPVAHTCSNQLCLPTY 155 (206)
Q Consensus 81 g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~rlP~~g~~~~~~-----~i~i~~~~~~~~LP~A~TCf~~L~LP~Y 155 (206)
++..++++|.|||+.+.+|++++|...++|+||++++|..|+..+.. .++|...+..+.+|.+|||||+|++|.|
T Consensus 264 ~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~~~~~~~~p~~htcfnrld~~~~ 343 (358)
T KOG0940|consen 264 GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEKWGKSTQLPRSHTCFNRLDLPPY 343 (358)
T ss_pred cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecCcccccccchhcccccccccccc
Confidence 99999999999999999999999999999999999999999987764 6888887788999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy7264 156 DNYEKFEKALITAIK 170 (206)
Q Consensus 156 ss~e~l~ekL~~AI~ 170 (206)
.|++.|++|+..||+
T Consensus 344 ~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 344 ESYEPLREKLLLAIE 358 (358)
T ss_pred cchhHHHHHHHHhcC
Confidence 999998888887764
No 12
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=40.41 E-value=20 Score=25.78 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=17.4
Q ss_pred hhCCHHHHHhhhhhccCCC
Q psy7264 97 QNFTTEERARLLQFTTGSS 115 (206)
Q Consensus 97 ~~~s~eer~~fL~F~TGs~ 115 (206)
.+|+++|-+.|=+|+|||+
T Consensus 50 D~lTpDQVrAlHRlvTsSp 68 (92)
T PHA02681 50 DKMTDDQVRAFHALVTSSP 68 (92)
T ss_pred ccCCHHHHHHHHHHHhCCC
Confidence 3599999999999999996
No 13
>PF13257 DUF4048: Domain of unknown function (DUF4048)
Probab=32.94 E-value=36 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=28.0
Q ss_pred hhHHH--HHHHHhhcCCchhccCCCHHHHHHHHcCCCCCcHHHHHhh
Q psy7264 32 PKQVI--IREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAH 76 (206)
Q Consensus 32 ~kq~A--~r~GF~~Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~ 76 (206)
-+|+| ||.|||..+ ++|++...|++-|+-...+..
T Consensus 86 gkQmAeDfK~GLWTFv----------EDIRQATVGDEpInG~~~R~~ 122 (253)
T PF13257_consen 86 GKQMAEDFKEGLWTFV----------EDIRQATVGDEPINGQQSRGS 122 (253)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHhhccccccCCcccccc
Confidence 37776 999999974 899999999988887666553
No 14
>PF12449 DUF3684: Protein of unknown function (DUF3684) ; InterPro: IPR022155 This domain family is found in eukaryotes, and is typically between 1072 and 1090 amino acids in length.
Probab=32.48 E-value=1.1e+02 Score=31.99 Aligned_cols=110 Identities=15% Similarity=0.282 Sum_probs=70.2
Q ss_pred cCCchhccCCCHHHHHHHHcCCCCCcHHHHHhhceecCC-----------CCC----chHHHHHHHHHhhCCHHHHHhhh
Q psy7264 44 FIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASS-----------FPH----PKLLQWFWTALQNFTTEERARLL 108 (206)
Q Consensus 44 Vip~~~l~~fs~~EL~~lvcG~~~i~~e~l~~~~~y~g~-----------~~~----~~~i~~Fw~vl~~~s~eer~~fL 108 (206)
++|...-+.++..+|+.+ |=.++++..|.++..-... +.+ .++..-+-+....+|+..|..+.
T Consensus 475 ~lP~~~tk~l~~~~L~~l--GW~eL~iv~Wl~~L~~~~~~~~~~~~e~dit~s~~fA~qVL~vLSK~W~~Ls~~sk~~v~ 552 (1093)
T PF12449_consen 475 TLPFAFTKSLSANELQSL--GWEELSIVPWLRFLISNAGSRGSLPVEQDITKSPKFAEQVLPVLSKNWDNLSPSSKQTVV 552 (1093)
T ss_pred cCChHhhccCCHHHHhhc--CCeeccHHHHHHHHhcCCcCCCccccccccccChhHHHHHHHHHHhcccCCCHHHHHHHH
Confidence 555555578999999999 8889999999888654321 111 22223344445679999999999
Q ss_pred hhccCCCCCCCC-CCCCCCCc-eeEeccCCCCCCceeccccCeeecCCCCCHHHHHHHHHHHH
Q psy7264 109 QFTTGSSQLPPG-GFAQLKPK-FSISYIQAHNSLPVAHTCSNQLCLPTYDNYEKFEKALITAI 169 (206)
Q Consensus 109 ~F~TGs~rlP~~-g~~~~~~~-i~i~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI 169 (206)
.-..-..-+|-. |++...-. |.-... =+-||+.+.|-+ .+||++.||
T Consensus 553 ~lL~~~t~iPTk~GMkkP~EaYF~sV~L--FdDLPvv~~~~g------------vkEKfL~AL 601 (1093)
T PF12449_consen 553 SLLQPKTCIPTKLGMKKPSEAYFPSVKL--FDDLPVVTGCNG------------VKEKFLVAL 601 (1093)
T ss_pred HHhccCcccccccccCCchhhhcchhhh--hcCcchhcccCc------------hHHHHHHHh
Confidence 988888888885 54322100 111111 133777766643 477777776
No 15
>PHA02568 J baseplate assembly protein; Provisional
Probab=31.57 E-value=51 Score=29.13 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=39.9
Q ss_pred CCHHHHHhhhhhccCCCCCCCCCCCCCCCceeEeccCCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHhh
Q psy7264 99 FTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQAHNSLPVAHTCSNQLCLPTYDNYEKFEKALITAIKAL 172 (206)
Q Consensus 99 ~s~eer~~fL~F~TGs~rlP~~g~~~~~~~i~i~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~ 172 (206)
.++.-|+.||.|.+|+.-=-++-+-+. .|+.+...+++..=|.. +.+.|-|.||+|++.|++.-
T Consensus 72 iN~aa~~~lla~A~g~dLD~l~a~~~v-~Rl~~~~a~~~~~pp~~---------a~~EsDe~lR~Ri~la~~~~ 135 (300)
T PHA02568 72 VNEAARAVMLAYAEGSDLDAIAANFNV-ERLVVTPADPNAFPPVP---------AVMEDDDSLRERIQLAPEGL 135 (300)
T ss_pred HHHHHHHhHHhhccCccHHHHHhhcCC-eecccCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHhhcc
Confidence 667778899999999875233222222 24555544332111111 55899999999999998753
No 16
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=30.98 E-value=63 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.0
Q ss_pred HHHHHhhCCHHHHHhhhhhcc
Q psy7264 92 FWTALQNFTTEERARLLQFTT 112 (206)
Q Consensus 92 Fw~vl~~~s~eer~~fL~F~T 112 (206)
+..++++++.+|.+.|-....
T Consensus 5 Ll~~Le~L~~~efk~FK~~L~ 25 (83)
T PF02758_consen 5 LLWYLEELSEEEFKRFKWLLK 25 (83)
T ss_dssp HHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhc
Confidence 678999999999999999984
No 17
>PF13945 NST1: Salt tolerance down-regulator
Probab=28.05 E-value=50 Score=27.37 Aligned_cols=21 Identities=33% Similarity=0.715 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhhCCHHHHHhhhh
Q psy7264 86 PKLLQWFWTALQNFTTEERARLLQ 109 (206)
Q Consensus 86 ~~~i~~Fw~vl~~~s~eer~~fL~ 109 (206)
...++-|| ..|+++||+.||+
T Consensus 104 re~LkeFW---~SL~eeERr~LVk 124 (190)
T PF13945_consen 104 REKLKEFW---ESLSEEERRSLVK 124 (190)
T ss_pred HHHHHHHH---HccCHHHHHHHHH
Confidence 56777899 4588999998876
No 18
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=26.30 E-value=41 Score=24.06 Aligned_cols=50 Identities=30% Similarity=0.501 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCceeEeccCCCCCCceeccccCeeecC-----------CCCCHHHHHHHHHHHHHhhh
Q psy7264 114 SSQLPPGGFAQLKPKFSISYIQAHNSLPVAHTCSNQLCLP-----------TYDNYEKFEKALITAIKALS 173 (206)
Q Consensus 114 s~rlP~~g~~~~~~~i~i~~~~~~~~LP~A~TCf~~L~LP-----------~Yss~e~l~ekL~~AI~~~~ 173 (206)
+++||.+++..+.|.+.+...++ ..+| ++.|| ...|+.. .|-..|.+.|.
T Consensus 9 C~~Lp~d~~~~~~P~~~~~~~~~------~~~c--~v~LP~~~pi~~i~g~~~~sk~~--AK~sAAf~Ac~ 69 (90)
T PF03368_consen 9 CSTLPSDSFTNLKPEFEIEKIGS------GFIC--TVILPINSPIRSIEGPPMRSKKL--AKRSAAFEACK 69 (90)
T ss_dssp HTTSSS-TT--SS-EEEEEE--G-------EEE--EEE--TT-SS--EEEE--SSHHH--HHHHHHHHHHH
T ss_pred HhcCCCCCCccCCceEEEEEcCC------cEEE--EEECCCCCCCCeEEccccccHHH--HHHHHHHHHHH
Confidence 35789999988888888876643 3444 44444 4455555 45566777774
No 19
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=24.45 E-value=1.9e+02 Score=20.38 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHh
Q psy7264 156 DNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAIN 197 (206)
Q Consensus 156 ss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 197 (206)
+|.++.|+||..-+-|=+.. | +.|.++.|++-+..+|.
T Consensus 13 ~Sa~~AKeRLq~iL~~dR~~--~--~p~~l~~mk~dil~VIs 50 (81)
T TIGR01215 13 NSAEVAKDRLKLILAHDRAQ--L--APEYLEELRKEILEVIS 50 (81)
T ss_pred CcHHHHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHHHH
Confidence 69999999999998775532 4 45788999999998885
No 20
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=24.40 E-value=2.1e+02 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHh
Q psy7264 156 DNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAIN 197 (206)
Q Consensus 156 ss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 197 (206)
+|.++.|+||..-+.|=+.. |. +.|..+.|++-|...|.
T Consensus 13 ~Sa~~AKeRLq~iL~~dR~~--~~-~p~~l~~lk~dIl~VIs 51 (86)
T PRK00296 13 STANVAKERLQIIVAHERSS--RG-EPDYLPQLRKEILEVIA 51 (86)
T ss_pred CcHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHH
Confidence 48999999999999665532 33 45678999999998885
No 21
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=24.26 E-value=2.1e+02 Score=20.40 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHh
Q psy7264 156 DNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAIN 197 (206)
Q Consensus 156 ss~e~l~ekL~~AI~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 197 (206)
+|.++.|+||..-+-|=++.+.| +.|-++.||+-|...|.
T Consensus 13 ~Sa~vAKeRLqiiLa~dR~~~~~--~p~~l~~lk~dil~VIs 52 (84)
T PRK13989 13 KTASVAKERLQIIIAHERVGGRQ--PPDYLPALQKELVAVIS 52 (84)
T ss_pred CcHHHHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHHHHH
Confidence 58999999999999998765444 45667889999988875
No 22
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=20.31 E-value=2.3e+02 Score=21.37 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhCCHHHHHhhhhhcc
Q psy7264 88 LLQWFWTALQNFTTEERARLLQFTT 112 (206)
Q Consensus 88 ~i~~Fw~vl~~~s~eer~~fL~F~T 112 (206)
...-+.+.+++++++++..+|..+-
T Consensus 88 ~~~~ll~~~~~L~~~~~~~~l~~l~ 112 (135)
T PRK09706 88 DQKELLELFDALPESEQDAQLSEMR 112 (135)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3456889999999999999988653
No 23
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=20.00 E-value=71 Score=24.02 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhh-cccCCCCcchHHHHHHHHHHHHhcCC
Q psy7264 158 YEKFEKALITAIKALSS-NQLCLPTYDNYEKFEKALITAINEGS 200 (206)
Q Consensus 158 ~e~l~ekL~~AI~~~~~-~~~~~~~~~~~~~~~~~l~~ai~~~~ 200 (206)
.+.++++|..+|+.|+. |-+|..+|-+-..+..-+..|++.|.
T Consensus 57 ~~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~ 100 (130)
T PF08937_consen 57 SEYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGK 100 (130)
T ss_dssp TTTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCC
Confidence 35689999999999998 88999999888999999999998754
Done!