RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7264
(206 letters)
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 144 bits (366), Expect = 9e-42
Identities = 61/172 (35%), Positives = 85/172 (49%), Gaps = 33/172 (19%)
Query: 41 FLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASSFPHPKLLQWFWTALQNFT 100
F + IPK+L+S +LL+ G I DL ++ + +QWFW AL++F
Sbjct: 261 FYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFD 320
Query: 101 TEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYI-QAHNSLPVAHTCSNQLCLPT 154
+RA+ LQF TG+S++P GFA L+ KF I ++ + LP AHTC
Sbjct: 321 QADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTC-------- 372
Query: 155 YDNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGLA 206
F NQL LP Y+++EK L+ AI E SEGFGLA
Sbjct: 373 ------F-------------NQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 143 bits (363), Expect = 2e-41
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 41 FLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASSF-PHPKLLQWFWTALQNF 99
F + +P L+ +LL+CG D + D H + + + P+ ++QWFW A+
Sbjct: 256 FTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLM 315
Query: 100 TTEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYIQAHNSLPVAHTCSNQLCLPT 154
E+R RLLQF TG+S++P GFA+L F+I + LP AHTC N+L LP
Sbjct: 316 DAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPP 375
Query: 155 YDNYEKFEKALITAI 169
Y+ +E + L+ A+
Sbjct: 376 YETFEDLREKLLMAV 390
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 141 bits (357), Expect = 8e-41
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 41 FLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASSFPHPKLLQWFWTALQNFT 100
F + +P + + Y +++LCG + +AD + V + K + WFW ++
Sbjct: 237 FNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETD 296
Query: 101 TEERARLLQFTTGSSQLPPGGFAQLK-----PKFSISYIQAHNSLPVAHTCSNQLCLPTY 155
E R RLLQF TG+ +LP GGFA+L KF I + LP +HTC N+L LP Y
Sbjct: 297 NEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPY 356
Query: 156 DNYEKFEKALITAI 169
+YE+ ++ L+ AI
Sbjct: 357 KSYEQLKEKLLFAI 370
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 142 bits (359), Expect = 1e-40
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 41 FLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASSFPHPKLLQWFWTALQNFT 100
F + IP+ LV+ +LL+ G ++ I D H +++QWFW + +
Sbjct: 287 FNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWD 346
Query: 101 TEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYIQAHNSLPVAHTCSNQLCLPTY 155
E+RARLLQFTTG+S++P GF L+ +F+I LP +HTC N++ LP Y
Sbjct: 347 NEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLPQY 406
Query: 156 DNYEKFEKALITAI 169
+Y+ ++ L A+
Sbjct: 407 VDYDSMKQKLTLAV 420
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 140 bits (354), Expect = 3e-40
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 41 FLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASSFPHPKLLQWFWTALQNFT 100
F + IP+ L+ +L++CG + D + + P +++WFW A++ F
Sbjct: 237 FNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFD 296
Query: 101 TEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYI-QAHNSLPVAHTCSNQLCLPT 154
E RARLLQF TGSS++P GF L+ F+I I N+LP AHTC N++ +P
Sbjct: 297 EERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPP 356
Query: 155 YDNYEKFEKALITAI 169
Y++YEK + L+TAI
Sbjct: 357 YESYEKLYEKLLTAI 371
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 124 bits (314), Expect = 1e-34
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 41 FLKFIPKKLVSYRLSPST-KLLLCGTSDYSIADLLAHHVVASSF-PHPKLLQWFWTALQN 98
F + + Y P +LL+CG+ + L + L++ FW + +
Sbjct: 220 FHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHS 279
Query: 99 FTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQAH-NSLPVAHTCSNQLCLPTYDN 157
FT E++ LQFTTG+ + P GG +L K I+ LP +HTC N L LP Y +
Sbjct: 280 FTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDTERLPTSHTCFNVLLLPEYSS 337
Query: 158 YEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEGFGL 205
EK ++ L+ AI ++GFG+
Sbjct: 338 KEKLKERLLKAI----------------------------TYAKGFGM 357
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold,
ubiquitin ligase; 1.97A {Homo sapiens}
Length = 118
Score = 110 bits (277), Expect = 1e-31
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 67 DYSIADLLAH-----HVVASSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGG 121
S+ L++ ++ + +WFW+ ++ + ER L+ F T S LP
Sbjct: 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASE 62
Query: 122 FAQLKPKFSISYIQAHNSLPVAHTCSNQLCLPTYDNYEKFEKALITAIKA 171
LP A+TC ++L +P Y + + ++ L+ AIK
Sbjct: 63 EGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-08
Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 58/182 (31%)
Query: 14 HMNGTP---LSRPRKVIVNLCPKQVIIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSI 70
+ G P LS I NL +QV ++ K + L ++ I
Sbjct: 330 NNEGVPSPMLS-----ISNLTQEQVQ------DYVNK--TNSHLPAGKQV--------EI 368
Query: 71 ADLLA----HHVVASSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLK 126
+ L + VV+ P+ L L+ + L Q S++P F++ K
Sbjct: 369 S--LVNGAKNLVVSG---PPQSLYGLNLTLRKAKAP--SGLDQ-----SRIP---FSERK 413
Query: 127 PKFSISYIQAHNSLPVA---HTCSNQLCLPTYDNYEKFEKALITAIKALSSNQLCLPTYD 183
KFS + LPVA H+ L +P D K L+ + ++ + +P YD
Sbjct: 414 LKFSNRF------LPVASPFHS---HLLVPASD---LINKDLVKNNVSFNAKDIQIPVYD 461
Query: 184 NY 185
+
Sbjct: 462 TF 463
Score = 40.4 bits (94), Expect = 3e-04
Identities = 42/261 (16%), Positives = 71/261 (27%), Gaps = 92/261 (35%)
Query: 5 HVSYVAYLIHMNGTPLSRPRKVIVNLCPKQVIIREYFL------KFIPKKLVSYRL---- 54
H + A L+ N T L + + +I+ Y + KK S L
Sbjct: 102 H-ALAAKLLQENDTTLVK----------TKELIKNYITARIMAKRPFDKKSNS-ALFRAV 149
Query: 55 -SPSTKLLLC----GTSD---------YS-----IADL----------LAHHVVASSFPH 85
+ +L+ G +D Y + DL L + +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 86 PK---LLQWFWTALQNFTTEERARLLQFTTGS--SQLPPGGFAQLKPKFSISYIQAHNSL 140
+ +L+W L+N + S P G QL Y+ L
Sbjct: 210 TQGLNILEW----LEN---PSNTPDKDYLLSIPIS-CPLIGVIQL-----AHYVVTAKLL 256
Query: 141 PVAH-----------TCSNQL----CLPTYDNYEKFEKALITAIKAL----SSNQLCLPT 181
S L + D++E F ++ AI L P
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 182 YDNYEKFEKALITAINEGSEG 202
+++ E +EG
Sbjct: 317 TS----LPPSILEDSLENNEG 333
Score = 38.1 bits (88), Expect = 0.001
Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 46/164 (28%)
Query: 74 LAHHVVASSFPHPKLLQWFWTALQ---NFT------TEER-------------ARLLQFT 111
L+H + P F+ A Q F TE + L +
Sbjct: 11 LSHGSLEHVLLVPTAS--FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 112 TGSSQLPPGGFAQLKP-------KFSISYIQAHNSLPVAHTCSNQLCLPTYDNYEKFEKA 164
SS + P Q +F Y++ ++ H + +L L D K
Sbjct: 69 --SSLVEPSKVGQFDQVLNLCLTEFENCYLEGND----IHALAAKL-LQENDTTLVKTKE 121
Query: 165 LITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEG----FG 204
LI +++ + +D AL A+ EG+ FG
Sbjct: 122 LIKN--YITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFG 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 1e-05
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 46/153 (30%)
Query: 59 KLLLCGTSDYSIADLLAHHVVASSFPHPKLLQWFWTALQNFTTEERARLL-QFTTGSSQ- 116
K+LL T + D L A++ H L T T +E LL ++ Q
Sbjct: 267 KILLT-TRFKQVTDFL----SAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQD 317
Query: 117 LPPGGFAQLKPKFSISYIQAHNSLP-----VAHTCSNQLCLPTYDNY-----EKFEKALI 166
LP + + P +A + + L T+DN+ +K +
Sbjct: 318 LPR---------------EVLTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIE 360
Query: 167 TAIKALSSNQLCLPTYDNYEKF----EKALITA 195
+++ L + +++ A I
Sbjct: 361 SSLNVLEPAEY----RKMFDRLSVFPPSAHIPT 389
Score = 37.1 bits (85), Expect = 0.003
Identities = 28/167 (16%), Positives = 45/167 (26%), Gaps = 59/167 (35%)
Query: 11 YLIHMNGTPLSRPRKVIVN-LCPKQVIIREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYS 69
H+N L+ + +N L P + R+ F + S
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRL------------------------S 379
Query: 70 IADLLAHHVVASSFPH-----PKLLQWFWTALQNFTTEE------RARLL--QFTTGSSQ 116
+ FP LL W + + L+ Q +
Sbjct: 380 V------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 117 LPPGGFAQLKPKFSISYIQAHNSL-----PVAHTCSNQLCLPTYDNY 158
+P + +LK K Y H S+ S+ L P D Y
Sbjct: 428 IP-SIYLELKVKLENEY-ALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 36.8 bits (84), Expect = 0.004
Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 46/189 (24%)
Query: 2 SERHVSYVAYLIHM-NGTPLSRPRKVIVNLCPKQVIIREYFLKFIPKKLVSYRLSPSTKL 60
S Y+ + N + V R + + L L P+ +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQAL--LELRPAKNV 153
Query: 61 LL-----CGTSDYSIA-DLLAHHVVASSFPHPKLLQWFWTALQNFTTEERARLLQFTTGS 114
L+ G + +A D+ + V + FW L+N + E L
Sbjct: 154 LIDGVLGSGKT--WVALDVCLSYKVQCKMDF----KIFWLNLKNCNSPE-TVLEMLQKLL 206
Query: 115 SQLPPGGFAQLKPKFSISYIQAHNSLPVAHTCSNQLCLPTY-------DN------YEKF 161
Q+ P ++ S + +S+ L Y N + F
Sbjct: 207 YQIDPNWTSR--SDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 162 E---KALIT 167
K L+T
Sbjct: 263 NLSCKILLT 271
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 31.3 bits (71), Expect = 0.21
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 15/39 (38%)
Query: 81 SSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQLPP 119
SS+PHPKL+ FW QF T S L P
Sbjct: 175 SSYPHPKLMPEFW---------------QFPTVSMGLGP 198
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 29.7 bits (67), Expect = 0.67
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 52 YRLSPSTKLLLCGTSDYSIADLLAHH 77
+R + T+ L TS I ++ H
Sbjct: 93 FRNTALTERYLTTTSADYIGPIVEHQ 118
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 27.7 bits (62), Expect = 2.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 52 YRLSPSTKLLLCGTSDYSIADLLAHH 77
YRL+ + + L S + + D +
Sbjct: 76 YRLTSDSAMFLDRQSKFYVGDAIEFL 101
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 27.5 bits (61), Expect = 3.4
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 69 SIADLLAHHVVASSFPHPKLLQWFWTALQNFTTEERARLLQFTTGSSQL 117
+I +++ ++ P P LQ F + N +E+ RLL + G +
Sbjct: 348 TIFQAFKYYLDITTPPTPLQLQQFASLATN--EKEKQRLLVLSKGLQEY 394
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal
BIN protein, structural genomics; HET: MSE; 1.25A
{Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Length = 361
Score = 27.1 bits (59), Expect = 3.8
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 97 QNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQAHNSLPVAHTCSNQLCLPTYD 156
+ E A + S L + + + A + V + + +PTY
Sbjct: 185 HIPSNETVAAMDACAELESILKNDLKSYIANNSNNINTDAVLNPVVTQY-VDAVVVPTYK 243
Query: 157 NYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAIN--EGSEGF 203
+ ++ AL A+ L+ N P+ +E A ITA E SE F
Sbjct: 244 SLKEKNDALYNAVIVLADN----PSNSAFETACDAWITAREPWEKSEAF 288
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.1 bits (60), Expect = 4.4
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 51 SYRLSPSTKLLLCGTSDYSIADLL---AHHVVASSFPHPKLLQWFWT 94
SY +P K L S+A L V+ S+ + L
Sbjct: 106 SYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYY--LKDAVLD 150
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 92 FWTALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQAH 137
F + GSS +P SI+Y+++H
Sbjct: 483 FALGNGESAQAVMHGI----AGSSGWKALAPIVPEPSQSINYVESH 524
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis,
hiszg, alloste evolution; 2.90A {Lactococcus lactis}
SCOP: c.94.1.1 PDB: 1z7n_E*
Length = 208
Score = 26.7 bits (60), Expect = 5.0
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 59 KLLLCGTSDYSIADLLAHHVVASSFPH 85
L D+S + H +AS +P
Sbjct: 93 IFALASYPDFSNKNFQRHKRIASKYPR 119
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 26.8 bits (60), Expect = 5.1
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 62 LCGTSDYSIADLLAHHVVASSFPHPKL 88
L G ++ + V + K+
Sbjct: 368 LSGCQ--NVKVIDKTLVRKNPLAVSKI 392
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 26.0 bits (58), Expect = 8.5
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 124 QLKPKFSISYIQAHNSLPVAHTCSNQLCLPTYDNYEKFEKALITAIKALSSN 175
P+ Y+ + L A+ + E+AL A N
Sbjct: 67 ARTPR----YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,136,086
Number of extensions: 173507
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 36
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)