RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7264
         (206 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score =  121 bits (304), Expect = 1e-33
 Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 37  IREYFLKFIPKKLVSYRLSPSTKLLLCGTSDYSIADLLAHHVVASSFPHPKLLQWFWTAL 96
             + F + +P + + Y      +++LCG  +  +AD   + V      + K + WFW  +
Sbjct: 233 FLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFV 292

Query: 97  QNFTTEERARLLQFTTGSSQLPPGGFAQLKP-----KFSISYIQAHNSLPVAHTCSNQLC 151
           +    E R RLLQF TG+ +LP GGFA+L       KF I  +     LP +HTC N+L 
Sbjct: 293 KETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLD 352

Query: 152 LPTYDNYEKFEKALITAIK 170
           LP Y +YE+ ++ L+ AI+
Sbjct: 353 LPPYKSYEQLKEKLLFAIE 371


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score =  110 bits (275), Expect = 1e-29
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 37  IREYFLKFIPKKLVSYRLSPST-KLLLCGTSDYSIADLLAHHVVASSFPH-PKLLQWFWT 94
            R  F     +  + Y   P   +LL+CG+ +     L         +     L++ FW 
Sbjct: 214 FRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWE 273

Query: 95  ALQNFTTEERARLLQFTTGSSQLPPGGFAQLKPKFSISYIQAHNSLPVAHTCSNQLCLPT 154
            + +FT E++   LQFTTG+ + P GG  +LK   + +       LP +HTC N L LP 
Sbjct: 274 IVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNG-PDTERLPTSHTCFNVLLLPE 332

Query: 155 YDNYEKFEKALITAI 169
           Y + EK ++ L+ AI
Sbjct: 333 YSSKEKLKERLLKAI 347


>d1nlxa_ a.24.17.1 (A:) Pollen allergen Phl P 6 {Timothy grass
           (Phleum pratense) [TaxId: 15957]}
          Length = 104

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 159 EKFEKALITAIKALSSNQLCLPTYDNYEKFEKALITAINEGSEG 202
           E    +   A+   ++    +P  D Y+ FE A   +       
Sbjct: 10  EDVNASFRAAMATTAN----VPPADKYKTFEAAFTVSSKRNLAD 49


>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
           synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
          Length = 384

 Score = 25.1 bits (53), Expect = 7.0
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 153 PTYDNYEKFEKALITAIKALSSNQLCLPTYDNYEKFEKAL 192
           P +  Y+  E+  +  ++AL   Q      D    FE+  
Sbjct: 6   PAWPQYDDAERNGL--VRALEQGQWWRMGGDEVNSFEREF 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 769,549
Number of extensions: 33828
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 6
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)