RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7265
(352 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 209 bits (533), Expect = 1e-64
Identities = 119/407 (29%), Positives = 165/407 (40%), Gaps = 124/407 (30%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKK 59
++YY ILG++K AS++EIKKAYRKLA KYHPD+N +EAEEKFKE+ EAYEVLSD +
Sbjct: 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61
Query: 60 KRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGG 119
KR YD++G G K+GG G F F GD F FFG G GG
Sbjct: 62 KRAAYDQFGHAGFKAGG-----FGGFGFGGFGGDFGDIFEDFFGG-----------GGGG 105
Query: 120 RGGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEH 179
R P P R D + +
Sbjct: 106 RRRP---------------------------------------NRPRRGAD------LRY 120
Query: 180 DLYVTLEDIVRGCTKKMKISRKVLQP----DGTSKKEDKVL---------TINVKPGWKA 226
+L +TLE+ V G K+++++R V G D V+
Sbjct: 121 NLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFF 180
Query: 227 GTKITFQKEGDQGKN----------------------KIPA------------------- 245
+ T GK IPA
Sbjct: 181 SFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPN 240
Query: 246 -----DIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNE 300
D+ + KPHP+F+R+G DL +S EA G + VPTL G +V L +
Sbjct: 241 GGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDG-RVKLKIPAG 299
Query: 301 IIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDIL 347
+T V ++ G+G+P + +GDL V ++ P LS + K++L
Sbjct: 300 -TQTGEVFRLRGKGMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELL 344
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 200 bits (510), Expect = 9e-61
Identities = 128/373 (34%), Positives = 179/373 (47%), Gaps = 58/373 (15%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
+ Y +L L+K + EIKKAYRKLA+K+HPDK EKFKE++ AYEVLSD +KR
Sbjct: 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRK 84
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRG- 121
+YD YGE+GL+ G D F FG PG RG
Sbjct: 85 IYDEYGEEGLEGGEQ-------------PADASDLFDLIFGGGRK-------PGGKKRGE 124
Query: 122 ---------------GPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPN 166
G + +++D+ + GGP +F N
Sbjct: 125 DIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGP-----------KDAFVDCKLCN 173
Query: 167 RAKDKVQDNAIEHDLYVTLEDIVRGCTKKMKI---SRKVLQPDGT-SKKEDKVLTINVKP 222
+VQ + ++ T + C + KI S+K G KK K+L +N+
Sbjct: 174 GQGIRVQIRQMGSMIHQT-QSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDK 232
Query: 223 GWKAGTKITFQKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCV 282
G KITF E D+ N+IP ++VFI+ +KPH FKREG DL T K+SL EALTG V
Sbjct: 233 GVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFV 292
Query: 283 LTVPTLTGEKVNLNLKN-EIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFP--DTL 339
+ L G K+ +N E++K +K I +G+P K P KKG+L V+F++ FP
Sbjct: 293 FYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKF 352
Query: 340 SQQTKDILYDLLP 352
+ + K+IL L P
Sbjct: 353 TNEEKEILKSLFP 365
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 165 bits (420), Expect = 2e-50
Identities = 62/164 (37%), Positives = 93/164 (56%), Gaps = 9/164 (5%)
Query: 177 IEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEG 236
+ +DL +TLE+ G K++KI RKV + +E K LT+ + G G ++ + EG
Sbjct: 3 LRYDLELTLEEAYFGKEKEIKIPRKVTR-----VREKKTLTVKIPAGVDDGQRLRLRGEG 57
Query: 237 DQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNL 295
D G N P D+ +IR KPHP+F+R+G+DL +SL EAL G + VPTL G KV L
Sbjct: 58 DAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGG-KVKL 116
Query: 296 NLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTL 339
+ + TV ++ G+G+P + +GDL V ++FP L
Sbjct: 117 KIP-PGTQPGTVLRLKGKGMPRLR-GGGRGDLYVEVKVEFPKKL 158
Score = 33.2 bits (77), Expect = 0.084
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 264 SDLRYTAKVSLREALTGCV--LTVPTLTG---EKVNLNLKNEI---IKTNTVKKIPGQGL 315
+DLRY +++L EA G + +P EK L +K I + ++ G+G
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVK--IPAGVDDGQRLRLRGEGD 58
Query: 316 PFPKEPQKKGDLLVSFDIK 334
P GDL V +K
Sbjct: 59 AGPNG-GPPGDLYVVIRVK 76
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 162 bits (411), Expect = 1e-46
Identities = 121/363 (33%), Positives = 184/363 (50%), Gaps = 33/363 (9%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
++YY ILG++K A+D+EIK AYRKLA+KYHPDKNK ++E+EEKFKE EAYE+L D KKR
Sbjct: 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRG 121
YD++G+ G+ +G G G +F+ GD F FFG G+ G G R
Sbjct: 64 QAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGS-----GGGRRS 118
Query: 122 GPGFQFGMD---------EDMDTDDIFSMGGPR----AGGPGGGAFRSQSFNIHGSPNRA 168
GP Q G D ED + + PR G GA + SP
Sbjct: 119 GP--QRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGS------SPTTC 170
Query: 169 KDKVQDNAIEHDL-YVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVK--PGWK 225
D I + ++ C K + + G ++K TIN+K PG +
Sbjct: 171 PDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE 230
Query: 226 AGTKITFQKEGDQGKNKIP-ADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLT 284
G+++ EG+ G N P D+ + K H LF+R+G+DL K+SL +A+ G +
Sbjct: 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIE 290
Query: 285 VPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTK 344
VPT+ G+K + + E ++ V ++ G G+P+ KGD V I+ P ++++ +
Sbjct: 291 VPTIDGKKAKMKIP-EGTESGQVFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQR 348
Query: 345 DIL 347
+++
Sbjct: 349 ELI 351
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 158 bits (401), Expect = 2e-45
Identities = 74/198 (37%), Positives = 94/198 (47%), Gaps = 55/198 (27%)
Query: 5 YYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDLY 64
YY ILG++K AS++EIKKAYRKLA KYHPD+NK +EAEEKFKE+ EAYEVLSD +KR Y
Sbjct: 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61
Query: 65 DRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGGPG 124
D++G G GG G F G
Sbjct: 62 DQFGHAGFNGGG-------------------------------GGGGGGFNGFDIGFFGD 90
Query: 125 FQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDLYVT 184
F DIF G GGG+ R + P R +D + +DL +T
Sbjct: 91 F----------GDIFGD----FFGGGGGSGRRRR----SGPRRGED------LRYDLELT 126
Query: 185 LEDIVRGCTKKMKISRKV 202
E+ V G K+++I RK
Sbjct: 127 FEEAVFGVEKEIEIPRKE 144
Score = 84.6 bits (210), Expect = 2e-18
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 211 KEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYT 269
KE K +T+ + G G ++ +G+ G+N P D+ +IR KPH +F+R+G+DL
Sbjct: 213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIE 272
Query: 270 AKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLV 329
+S +A+ G + VPTL G V L + ++ TV ++ G+G+P + +GDLLV
Sbjct: 273 VPISFTQAILGGEIEVPTLDG-DVKLKIP-AGTQSGTVFRLKGKGVPRLRGN-GRGDLLV 329
Query: 330 SFDIKFPDTLSQQTKDIL 347
+ ++ P LS++ K++L
Sbjct: 330 TVKVETPKNLSKEQKELL 347
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 158 bits (400), Expect = 6e-45
Identities = 126/387 (32%), Positives = 176/387 (45%), Gaps = 71/387 (18%)
Query: 4 NYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKRD 62
+YY ILG++K AS +EIKKAYRKLA+KYHPDKN EAE++FKEV+EAYEVLSD +KR+
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGG 122
YDRYG+DG +G G G N D TF GAF G GG
Sbjct: 62 SYDRYGKDGPFAGAGGFGGAGMGNME----DALRTF---------MGAFGGEFGGGGSFF 108
Query: 123 PGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDLY 182
G G+ E G R G G S+ +I S A V E +L
Sbjct: 109 EGLFGGLGEAF---------GMRGGPAGARQGASKKVHITLSFEEAAKGV-----EKELL 154
Query: 183 VTLEDIVRGCTKK-------------MKISRKVLQPDG---------------------- 207
V+ C+ K S +V+Q G
Sbjct: 155 VSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPC 214
Query: 208 ------TSKKEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFK 260
K+ + + +++ G +G ++ + GD G+N PA D+ I +PHP+F+
Sbjct: 215 SVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFE 274
Query: 261 REGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKE 320
R G DL + +A G +PTL E E I++ T+ K+ GQG P
Sbjct: 275 RRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFP-NVH 333
Query: 321 PQKKGDLLVSFDIKFPDTLSQQTKDIL 347
+ +GDLLV ++ P LS++ K++L
Sbjct: 334 GKGRGDLLVRISVETPQNLSEEQKELL 360
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 155 bits (394), Expect = 3e-44
Identities = 118/366 (32%), Positives = 172/366 (46%), Gaps = 40/366 (10%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
++YY ILGL+K AS ++IKKAYRKLA+KYHPDKNK +AEEKFKE++EAY VLSD +KR
Sbjct: 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGG 122
YDR+G G+ + +F F GD F FFG G G RG
Sbjct: 65 QYDRFGHAGIDNQYSAEDIFRGADFGGF-GD---IFEMFFG------------GGGRRGR 108
Query: 123 PGFQFGMDEDMDTDDIFSMGG---------PRA------GGPGG--GAFRSQSFNIHGSP 165
G + G D D PRA G G G + G+
Sbjct: 109 MGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTG 168
Query: 166 NRAKDKVQDNAIEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWK 225
+ + + T G + ++ V G +K K+ T+NV G
Sbjct: 169 QVTT--TRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKI-TVNVPAGAD 225
Query: 226 AGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLT 284
+G ++ EG+ G P+ D+ ++ K H F+R G D+ +S +A G +
Sbjct: 226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIM 285
Query: 285 VPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTK 344
VPTL G KV +N+ +T++V ++ +G+P KGD LV +K P L+Q+ K
Sbjct: 286 VPTLYG-KVKMNIPPG-TQTHSVFRLKDKGMPR-LHGHGKGDQLVKVIVKTPTKLTQEQK 342
Query: 345 DILYDL 350
++L +
Sbjct: 343 ELLREF 348
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 154 bits (391), Expect = 9e-44
Identities = 117/377 (31%), Positives = 170/377 (45%), Gaps = 70/377 (18%)
Query: 4 NYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDL 63
+YY +LG+++ AS DEIK AYRKLALKYHPD+NK + A EKF ++ EAY VLSD +KR
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62
Query: 64 YDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGGP 123
YDR+G PG G + F DP F Q FG + F G GR GP
Sbjct: 63 YDRFGT------APGAGMPGGDPFGGMGFDPMDIFEQLFGGAG-------FGGGRGRRGP 109
Query: 124 GFQFGMDEDMDTDDIFSMGGPRAGG---------------------PGG----------- 151
+D++T+ ++ RAG PGG
Sbjct: 110 ----ARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRG 165
Query: 152 -GAFRSQSFNIHGSPNRAKDKVQDNAIEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSK 210
GA R+Q+ I G V+ + I CT V + G +
Sbjct: 166 AGAVRAQARTIFGV-------VETQQPCPTCRGEGQIITDPCT--------VCRGRGRTL 210
Query: 211 KEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTA 270
K + V + + G G +I G++G D+ I +PHP +RE L Y A
Sbjct: 211 KAETV-KVKLPRGIDEGYRIRVAGMGNEGPGG-NGDLYVHIEMEPHPELRREQEHLIYEA 268
Query: 271 KVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVS 330
++ +A G +TVPTL G +V + +K + + ++ GQG+P + GDL+V
Sbjct: 269 RIGFAKAALGGQITVPTLDGPQV-IEVKPG-TQHGDLHRLRGQGMP-RLQGAGTGDLIVE 325
Query: 331 FDIKFPDTLSQQTKDIL 347
++I P LS + ++ L
Sbjct: 326 YEIAVPKQLSPEAREAL 342
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 149 bits (379), Expect = 7e-42
Identities = 77/205 (37%), Positives = 100/205 (48%), Gaps = 66/205 (32%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKK 59
++YY +LG+++ AS+DEIKKAYRKLA+KYHPD+N +EAEEKFKE+ EAYEVLSD +
Sbjct: 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ 61
Query: 60 KRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGG 119
KR YD+YG + GG G GG FG FG F
Sbjct: 62 KRAAYDQYGHAAFEQGGGG---GG------------------FGGGGGFGDIFG------ 94
Query: 120 RGGPGFQFGMDEDMDTDDIFS--MGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAI 177
DIF GG R GG A R G+ R
Sbjct: 95 -----------------DIFGDIFGGGRGGG-RQRARR-------GADLR---------- 119
Query: 178 EHDLYVTLEDIVRGCTKKMKISRKV 202
+++ +TLE+ VRG TK+++I V
Sbjct: 120 -YNMEITLEEAVRGVTKEIRIPTLV 143
Score = 60.5 bits (148), Expect = 3e-10
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 211 KEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYT 269
+++K L++ + G G +I EG+ G+ PA D+ I K HP+F+R+G+DL
Sbjct: 208 EKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCE 267
Query: 270 AKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLV 329
+S A G + VPTL G +V L + +T + ++ G+G+ +GDL
Sbjct: 268 VPISFTTAALGGEIEVPTLDG-RVKLKIPEG-TQTGKLFRLRGKGVK-SVRSGARGDLYC 324
Query: 330 SFDIKFPDTLSQQTKDILYDL 350
++ P L+++ K++L +
Sbjct: 325 QVVVETPVNLTKRQKELLEEF 345
Score = 31.7 bits (73), Expect = 0.59
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 261 REGSDLRYTAKVSLREALTGCV--LTVPTL 288
R G+DLRY +++L EA+ G + +PTL
Sbjct: 113 RRGADLRYNMEITLEEAVRGVTKEIRIPTL 142
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 146 bits (370), Expect = 1e-41
Identities = 114/341 (33%), Positives = 155/341 (45%), Gaps = 74/341 (21%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
K+YYAILG+ K AS DEIKKA++KLA KYHPD NKS AEEKFKE+ EAY VLSD +KR
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63
Query: 63 LYDRYGEDGLKSG--GPGLHTGGTENFTSFH-GDPRATFAQFFGSSSPFGAFFEFPGSGG 119
+YD YG +G GP G +F+ F+ GD F Q FG FG F + GS G
Sbjct: 64 IYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVG 123
Query: 120 RGGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEH 179
R R G +E
Sbjct: 124 RRA----------------------RKGRD---------------------------LEA 134
Query: 180 DLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEGDQG 239
+L +TLE+ RG KV++ G + L++ + PG + G I +G QG
Sbjct: 135 ELPLTLEEAYRG-------GEKVVEVAG------ERLSVRIPPGVREGQVIRLAGKGRQG 181
Query: 240 KNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKN 299
D+ ++R PHP+F+ EG DL T V A+ G + V TL G V + +
Sbjct: 182 -----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDG-PVEVTIPP 235
Query: 300 EIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLS 340
+T +K+ +G +P+ P +GD I P +
Sbjct: 236 ---RTQAGRKLRLKGKGWPRGPAGRGDQYAEVRITIPTRPT 273
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 138 bits (348), Expect = 2e-37
Identities = 107/367 (29%), Positives = 171/367 (46%), Gaps = 43/367 (11%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
++YY +LG+++ A EIKKAYRKLA KYHPD ++ AEEKFKE++EAY VLSD +KR
Sbjct: 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFF-GSSSPFGAFFEFPGSGGRG 121
YD++G G+ + F+ F F G G F+ G GG
Sbjct: 65 RYDQFGHAGM------------DGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGGS 112
Query: 122 GPGFQFGMD----EDMDTDDIFS----------------MGGPRAGGPGGGAFRSQSFNI 161
G Q G D ++ ++ S G RA PG +
Sbjct: 113 RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAE-PGSEVKTCPTCGG 171
Query: 162 HGSPNRAKDKVQDNAIEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVK 221
G +V++ + + VT +G K ++ G +E K +++ +
Sbjct: 172 TGQ----VKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGV-VRETKTISVKIP 226
Query: 222 PGWKAGTKITFQKEGDQG-KNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTG 280
G + G+++ EG+ G + P D+ +I+ KPH +F+REG++L Y +S +A G
Sbjct: 227 AGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALG 286
Query: 281 CVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLS 340
+ VPT+ G V L + ++ T ++ G G+P + KG+L V + P LS
Sbjct: 287 DTVDVPTIDGP-VELKIPAG-TQSGTTFRLKGHGMPSLRW-SGKGNLYVKVKVVVPKKLS 343
Query: 341 QQTKDIL 347
+ K++L
Sbjct: 344 PKQKELL 350
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 131 bits (331), Expect = 3e-35
Identities = 106/369 (28%), Positives = 168/369 (45%), Gaps = 35/369 (9%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKN--KSREAEEKFKEVAEAYEVLSDK 58
M K+YY ILG+++ AS ++IKKA+R+LA K+HPD + EAEEKFKE++EAYEVLSD
Sbjct: 1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60
Query: 59 KKRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSG 118
+KR YD+ G +GG + +NFT F D F Q FG + FG+ F
Sbjct: 61 QKRRQYDQTGTVDFGAGGSNFNW---DNFTHF-SDINDIFNQIFGGN--FGSDF----FS 110
Query: 119 GRGGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKV------ 172
G G +D D+ T+ S+ G +R + S AK+
Sbjct: 111 GFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPT 170
Query: 173 -----QDNAIEHDLYVTLEDIV--RGCTKKMKISRK---VLQPDGT-SKKEDKVLTINVK 221
Q + + + + R C + +I + GT ED +++ +
Sbjct: 171 CHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNED--ISVKIP 228
Query: 222 PGWKAGTKITFQKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGC 281
G ++ + +G Q D+ ++R P +R DL K++ +A G
Sbjct: 229 KGATDNLRLRVKGKG-QSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGG 287
Query: 282 VLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQ 341
+ + L EK NL + E + V KI G G+P GDLLV +++ P L+
Sbjct: 288 EIEI-KLFREKYNLKIP-EGTQPGEVLKIKGAGMPH-LNGHGSGDLLVRINVEVPKRLTS 344
Query: 342 QTKDILYDL 350
+ K+++ +
Sbjct: 345 KQKELIREF 353
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 129 bits (326), Expect = 3e-34
Identities = 80/207 (38%), Positives = 106/207 (51%), Gaps = 48/207 (23%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKN-KSREAEEKFKEVAEAYEVLSDKK 59
M ++YY +LG+++ A DEIKKAYRKLALKYHPDKN ++EAEE FKEV EAYEVLS+
Sbjct: 1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDD 60
Query: 60 KRDLYDRYGEDGL----KSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFP 115
KR YD++G G+ SGG + GG +F D + F FG
Sbjct: 61 KRRRYDQFGHAGVGSSAASGGGPGYGGGGGDF----NDIFSAFNDMFGG----------- 105
Query: 116 GSGGRGGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDN 175
G+ GG F F D+F GGG R S I G+ + +
Sbjct: 106 GARRGGGSPFGFE--------DVFG---------GGGRRRRASAGIPGTDLKIR------ 142
Query: 176 AIEHDLYVTLEDIVRGCTKKMKISRKV 202
L +TLE+I +G K +KI ++V
Sbjct: 143 -----LKLTLEEIAKGVEKTLKIKKQV 164
Score = 70.6 bits (173), Expect = 2e-13
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 210 KKEDKVLTINVKPGWKAGTKITFQKEGDQG-KNKIPADIVFIIRDKPHPLFKREGSDLRY 268
K+ + + + V G + G +T + +G+ G + P D++ +I +KPH LF R G D+ Y
Sbjct: 231 KQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY 290
Query: 269 TAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLL 328
VS + + G + VPTL G V L + + T+ +IPG+G+ + +GD
Sbjct: 291 NLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG-TQPETMLRIPGKGIGHLRGS-GRGDQY 347
Query: 329 VSFDIKFPDTLSQQTKDILYDL 350
V ++ P +S Q K++L +L
Sbjct: 348 VRVNVFVPKEVSHQDKELLKEL 369
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 124 bits (314), Expect = 9e-33
Identities = 65/129 (50%), Positives = 82/129 (63%), Gaps = 14/129 (10%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
++YY ILG+ + AS++EIKK+YRKLA+KYHPD+N +EAEE FKE AEAYEVLSD KKR
Sbjct: 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRG 121
+YD+YG +GL G +G + F+SF GD F FFG FG G GR
Sbjct: 64 GIYDQYGHEGLSGTGFSGFSGFDDIFSSF-GD---IFEDFFG----FGG-----GRRGRS 110
Query: 122 GPGFQFGMD 130
+ G D
Sbjct: 111 RTAVRAGAD 119
Score = 52.8 bits (127), Expect = 1e-07
Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 214 KVLTINVKPGWKAGTKITFQKEGDQG-KNKIPADIVFIIRDKPHPLFKREGSDLRYTAKV 272
K + + + G G+++ + EG+ G + P D+ + +PH F+R+G+D+ +
Sbjct: 213 KTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPI 272
Query: 273 SLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNT----VKKIPGQGLPFPKEPQKKGDLL 328
S +A G + VPTL GE+ LK I T + + G+G+P + +GD +
Sbjct: 273 SFVQAALGAQIEVPTLEGER---ELK---IPKGTQPGDIFRFKGKGIPSLRG-GGRGDQI 325
Query: 329 VSFDIKFPDTLSQQTKDIL 347
+ ++K P L+++ +++L
Sbjct: 326 IEVEVKVPTRLTKKQEELL 344
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 124 bits (313), Expect = 1e-32
Identities = 101/365 (27%), Positives = 170/365 (46%), Gaps = 31/365 (8%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
M ++YY ILG++K AS ++KKAY KLA +YHPD +++AE+KFKE+ AY+VL D++K
Sbjct: 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGR 120
R YDR+G D ++ GG N FH D F FF +F G R
Sbjct: 61 RAAYDRFGHDAFQNQQS---RGGGGNHGGFHPDINDIFGDFFS---------DFMGGSRR 108
Query: 121 GGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRS--QSFNIHGSPNRAKDKVQD---- 174
P D+ + ++ G +F S + HGS + + V
Sbjct: 109 SRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDAC 168
Query: 175 -----NAIEHDLYVTLEDIVRGCTKKMKISR---KVLQPDGTSKKEDKVLTINVKPGWKA 226
++ + T+E C +I + K G K+ + L++N+ G +
Sbjct: 169 SGVGATRMQQGFF-TIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQ-RNLSVNIPAGVEN 226
Query: 227 GTKITFQKEGDQG-KNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTV 285
GT+I EG+ G + D+ I KPH ++K +G++L +S A G + V
Sbjct: 227 GTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEV 286
Query: 286 PTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKD 345
P + G KVNL + + + ++ +G+ + +GD+L ++ P LS++ ++
Sbjct: 287 PVIEGGKVNLTIPAGTQNGDQL-RLRSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRE 344
Query: 346 ILYDL 350
+L +
Sbjct: 345 LLEEF 349
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 115 bits (290), Expect = 2e-32
Identities = 45/63 (71%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 4 NYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS-REAEEKFKEVAEAYEVLSDKKKRD 62
+YY ILG+ + ASD+EIKKAYRKLALKYHPDKN AEEKFKE+ EAYEVLSD +KR
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 63 LYD 65
+YD
Sbjct: 61 IYD 63
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 124 bits (312), Expect = 2e-32
Identities = 62/131 (47%), Positives = 78/131 (59%), Gaps = 14/131 (10%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKN-KSREAEEKFKEVAEAYEVLSDKK 59
++YY +LG+++ AS+DEIKKAYRKLAL+YHPD+N + EAE+KFKE AEAYEVL D +
Sbjct: 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE 61
Query: 60 KRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGG 119
KR YDR+G G+ G E+ F+ F S FG F F G G
Sbjct: 62 KRARYDRFGHAGVNGNGGFGGFSSAEDI----------FSHF---SDIFGDLFGFSGGGS 108
Query: 120 RGGPGFQFGMD 130
R GP Q G D
Sbjct: 109 RRGPRPQAGSD 119
Score = 66.3 bits (162), Expect = 4e-12
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 211 KEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYT 269
++ + L + + G G+++ + EG+ G + P D+ +I + +F+R+G DL T
Sbjct: 210 QQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVT 269
Query: 270 AKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIK---TNTVKKIPGQGLPFPKEPQKKGD 326
++S +A G + VPTL + +I K + V ++ G+GLP+ Q KGD
Sbjct: 270 QEISFVQAALGDRIEVPTLDDP-----VTLDIPKGTQSGEVFRLRGKGLPYLGSSQ-KGD 323
Query: 327 LLVSFDIKFPDTLSQQTKDIL 347
LLV + P L+++ +++L
Sbjct: 324 LLVEVSVVTPTKLTKRQEELL 344
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 119 bits (299), Expect = 4e-31
Identities = 86/290 (29%), Positives = 123/290 (42%), Gaps = 60/290 (20%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
K+YYAI+G+ IK AYR+LA KYHPD +K +AE +FKEVAEA+EVLSD+++R
Sbjct: 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGG 122
YD DP+ F F+
Sbjct: 64 EYD--------------------QLWQHRNDPQ------------FNRQFQHGDG----- 86
Query: 123 PGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDLY 182
Q ED DDIF S F H +R + + + IE ++
Sbjct: 87 ---QSFNAEDF--DDIF----------------SSIFGQHARQSRQRPAARGHDIEIEVA 125
Query: 183 VTLEDIVRGCTKKMKISRKVLQPDGTSKKE-DKVLTINVKPGWKAGTKITFQKEGDQGKN 241
V LE+ + + + + V G ++E K L + + G G +I + +G G+N
Sbjct: 126 VFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGEN 185
Query: 242 KIP-ADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTG 290
P D+ +I PHPLF G DL ++ EA G +TVPTL
Sbjct: 186 GGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKE 235
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 117 bits (295), Expect = 6e-30
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
K+YY ILG+++ A+ +EIKKAYR+LA KYHPD NK+ EAEEKFKE+ EAY+VLSD +K
Sbjct: 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEK 60
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENFTSFHG----DPRATFAQFFGSSSPFG 109
R LYD++G G G G E F+ F G D FG FG
Sbjct: 61 RKLYDQFGHAAFS--GSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFG 111
Score = 72.9 bits (179), Expect = 3e-14
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 209 SKKEDKVLTINVKPGWKAGTKITFQKEGDQGKNK-IPADIVFIIRDKPHPLFKREGSDLR 267
KKE + + + PG G+K+ +G G+ P D+ I++ KPHPLF+R G +L
Sbjct: 221 IKKE--TIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLY 278
Query: 268 YTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDL 327
+++ EA+ G L VP L G+K + + K ++PG+G+P K GDL
Sbjct: 279 LDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG-TKEGDKIRVPGKGMPRLKG-SGYGDL 336
Query: 328 LVSFDIKFP 336
+V I P
Sbjct: 337 VVRVHIDVP 345
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 116 bits (293), Expect = 1e-29
Identities = 58/118 (49%), Positives = 72/118 (61%), Gaps = 15/118 (12%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
++YY +LG++K AS DEIKKAYRKL+ KYHPD NK A+EKFKE++EAYEVLSD +KR
Sbjct: 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGR 120
YD++G G G G GG + F FG F +FF G GGR
Sbjct: 64 QYDQFGHAGPNQGFGGGGFGGGD------------FGGGFGFEDIFSSFF---GGGGR 106
Score = 47.4 bits (113), Expect = 6e-06
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 207 GTSKKEDKVLTINVK--PGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREG 263
K K INVK G G +I EG+ G N PA D+ + R +PH F+R+G
Sbjct: 207 HGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDG 266
Query: 264 SDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQK 323
D+ ++ +A G + VPTL G KV L + +T T ++ G+G+P +
Sbjct: 267 DDIYCEMPLTFAQAALGDEIEVPTLHG-KVKLKIP-AGTQTGTQFRLKGKGVPNVRG-YG 323
Query: 324 KGDLLVSFDIKFPDTLSQQTKDIL 347
+GD V + P L+ + K++L
Sbjct: 324 QGDQYVVVRVVTPTKLTDRQKELL 347
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 116 bits (292), Expect = 2e-29
Identities = 75/200 (37%), Positives = 102/200 (51%), Gaps = 58/200 (29%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
K+YY +LGL KGASDDEIKKA+RKLA+KYHPDKNK ++EAEEKFKE+ EAY+VLSD +K+
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRG 121
YD+ FG++ +F G+GG G
Sbjct: 64 AQYDQ-----------------------------------FGTA-------DFNGAGGFG 81
Query: 122 GPGFQ-FGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHD 180
GF F + DIF GG G + R ++ P R D IE+
Sbjct: 82 SGGFGGFDFSDMGGFGDIFDS---FFGGGFGSSSRRRN-----GPQRGAD------IEYT 127
Query: 181 LYVTLEDIVRGCTKKMKISR 200
+ +T E+ V G K++ ++R
Sbjct: 128 INLTFEEAVFGVEKEISVTR 147
Score = 62.5 bits (152), Expect = 8e-11
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 207 GTSKKEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPADIVFI-IRDKPHPLFKREGSD 265
G +K K+ +NV G G I + +G+ GKN P ++I IR PH FKR+G D
Sbjct: 215 GKVRKNRKI-KVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFD 273
Query: 266 LRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEI---IKTNTVKKIPGQGLPFPKEPQ 322
+ +S +A G + VPT+ G +K E+ + TV ++ G+G+P
Sbjct: 274 IYIDKHISFAKAALGTEIKVPTVDG-----EVKYEVPAGTQPGTVFRLKGKGVPRVNSTG 328
Query: 323 KKGDLLVSFDIKFPDTLSQQTKDILYDLL 351
+G+ V+ + P L+ + K+ L +
Sbjct: 329 -RGNQYVTVIVDIPKKLNSKQKEALTMFM 356
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 115 bits (290), Expect = 3e-29
Identities = 62/121 (51%), Positives = 70/121 (57%), Gaps = 11/121 (9%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
YY LG++K AS DEIKKAYRKL+ KYHPD NK AEEK+KEV EAYE LSD +KR
Sbjct: 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGG 122
YD+YG G +GG G GG F F G F G F +F F G G R
Sbjct: 64 AYDQYGAAGA-NGGFG---GGAGGFGGFDG-----SGGFGGFEDIFSSF--FGGGGARRN 112
Query: 123 P 123
P
Sbjct: 113 P 113
Score = 48.9 bits (117), Expect = 2e-06
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 212 EDKVLTINVK--PGWKAGTKITFQKEGDQGKNKIP-ADIVFIIRDKPHPLFKREGSDLRY 268
E + T++VK G + G +I Q +G+ G N P D+ + R +P F+R+GS + Y
Sbjct: 215 EKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYY 274
Query: 269 TAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLL 328
T +S +A G + VPT+ G+ V L + +T ++ G+G P + GD
Sbjct: 275 TLPISFVQAALGDTVEVPTVHGD-VELKIP-AGTQTGKKFRLRGKGAPKLRG-GGNGDQH 331
Query: 329 VSFDIKFPDTLSQQTKDILYD 349
V+ +I P L+ K+ L
Sbjct: 332 VTVNIVTPTKLNDAQKEALKA 352
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 112 bits (282), Expect = 4e-28
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 17/121 (14%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
M ++YY +LG+++ ASD EIK+AYRKLA + HPD N EA+EKFKE++ AYEVLSD +K
Sbjct: 1 MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEK 60
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGR 120
R + D G D L+S G GG F G F FFG G+ R
Sbjct: 61 RRIVD-LGGDPLESAG-----GGGGGFGGGFGGLGDVFEAFFGG-----------GAASR 103
Query: 121 G 121
G
Sbjct: 104 G 104
Score = 58.5 bits (142), Expect = 2e-09
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 216 LTINVKPGWKAGTKITFQKEGDQGKNKIPADIVFI-IRDKPHPLFKREGSDLRYTAKVSL 274
+T+ + G G +I +G+ G PA +++ + ++PH +F R+G DL T V +
Sbjct: 214 ITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPM 273
Query: 275 REALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIK 334
+A G +TV + + + + +V + G+G+P + +GDL ++
Sbjct: 274 VDAALGTTVTVEAILDGPSEITIPPG-TQPGSVITLRGRGMPHLRS-GGRGDLHAHVEVV 331
Query: 335 FPDTLSQQTKDILYDL 350
P L + ++L +L
Sbjct: 332 VPTRLDHEDIELLREL 347
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 112 bits (281), Expect = 5e-28
Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 11/123 (8%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
++YY +LG++K A+ DEIKKAYRK A++YHPDKN +EAEEKFKE AEAY+VLSD KR
Sbjct: 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKR 64
Query: 62 DLYDRYGEDGL--KSGGPGLHTGG--TENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGS 117
YD++G G+ +GG G G E+ S GD F G FG F F G
Sbjct: 65 SRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGD---IFGGHGGG---FGGFGGFGGG 118
Query: 118 GGR 120
G +
Sbjct: 119 GSQ 121
Score = 62.5 bits (152), Expect = 6e-11
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 213 DKVLTINVKPGWKAGTKITFQKEGDQGK-NKIPADIVFIIRDKPHPLFKREGSDLRYTAK 271
++V+T+ + G G +++ +G+ GK + D++ +I ++PHP R+ +DL Y
Sbjct: 226 EEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLL 285
Query: 272 VSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSF 331
+S+ A G + VPT+ G K + ++ + V ++ +GLP GDLLV+
Sbjct: 286 LSVPTAALGGAVEVPTIDG-KAKVKIEAG-TQPGKVLRLRNKGLP-SVNGYGTGDLLVNV 342
Query: 332 DIKFPDTLSQQTKDIL 347
+ P+TLS++ K L
Sbjct: 343 SVYIPETLSKEEKQTL 358
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 103 bits (258), Expect = 8e-28
Identities = 43/60 (71%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS--REAEEKFKEVAEAYEVLSDKKK 60
+YY ILG+ + AS DEIKKAYRKLALKYHPDKN EAEEKFKE+ EAYEVLSD +K
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 102 bits (256), Expect = 1e-27
Identities = 42/55 (76%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 4 NYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSR-EAEEKFKEVAEAYEVLSD 57
+YY ILG+ ASD+EIKKAYRKLALKYHPDKN EAEEKFKE+ EAYEVLSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 110 bits (277), Expect = 2e-27
Identities = 96/363 (26%), Positives = 166/363 (45%), Gaps = 23/363 (6%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
K+YY +LG++K AS+ EI++AYRKLA +YHPD NKS +A +K E+ EA +VL DK KR
Sbjct: 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63
Query: 63 LYDRYGEDGLK-SGGPGLHTGGTENFTSFHGDPRAT-----FAQFFGSSSPFGAFFEFPG 116
YD++G S G + G E+ S G + F+ FFGS+ + ++
Sbjct: 64 QYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNK---SDYQRST 120
Query: 117 SGGRGG-------PGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAK 169
G FG+D+ ++ D + + G + N HG+
Sbjct: 121 KGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLV 180
Query: 170 DKVQDNAIEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTK 229
K + ++ G K +K K + G + K+ +N+ G + +
Sbjct: 181 QK-NMGFFQFQQSAKC-NVCNGAGKIIKNKCKNCKGKGKYLERKKI-EVNIPKGIRPNQQ 237
Query: 230 ITFQKEGDQG-KNKIPADIVFIIRDKPHPLFKREGS-DLRYTAKVSLREALTGCVLTVPT 287
I ++G N + D++ I K +F+ + D+ T +S +A+ G + + T
Sbjct: 238 IKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKT 297
Query: 288 LTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDIL 347
L G+ + L I +N + I +GL K+GDL++ +I P LS++ K+++
Sbjct: 298 LDGD-IKYKLPKS-INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI 355
Query: 348 YDL 350
+
Sbjct: 356 EQI 358
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 110 bits (276), Expect = 2e-27
Identities = 103/373 (27%), Positives = 163/373 (43%), Gaps = 62/373 (16%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
++YY +LG+++ AS DE+KKAYRKLA KYHPD NK+ +AE+KFKEV EAY+ LSD +K+
Sbjct: 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGG 122
YD++G G G G F+ F FFG G GGR
Sbjct: 64 HYDQFGHTDPNQGFGGGGAGDFGGFSDI-------FDMFFG------------GGGGRRN 104
Query: 123 PGFQ------------------FGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGS 164
P FG + +++ + G G G + GS
Sbjct: 105 PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGS 164
Query: 165 ------PNRAKDKVQDNAIEHDLYVT---LEDIVRGCTKKMKISRKVLQPDGTSKKEDKV 215
N +V + + H T ++ C K K+ ++ K
Sbjct: 165 GQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKR------------KK 212
Query: 216 LTINVKPGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYTAKVSL 274
+ + V G G ++ +G+ G N P D+ + KPH F+R+G D+ ++
Sbjct: 213 INVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTF 272
Query: 275 REALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIK 334
+ G + VPTL G KV L + +T T ++ G+G+P + +GD V +
Sbjct: 273 PQVALGDEIEVPTLNG-KVKLKIPAG-TQTGTSFRLRGKGVP-NVHGRGQGDQHVQVRVV 329
Query: 335 FPDTLSQQTKDIL 347
P L+++ K+++
Sbjct: 330 TPKNLTEKEKELM 342
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 110 bits (275), Expect = 2e-27
Identities = 104/363 (28%), Positives = 160/363 (44%), Gaps = 34/363 (9%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKK 59
M +YY IL + K ++ + IKK+YRKLALKYHPD+N +EAEEKFK + EAY VLSD+K
Sbjct: 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEK 60
Query: 60 KRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFP-GSG 118
KR LYDRYG+ GL G ++ F+ FF G+FFE G G
Sbjct: 61 KRALYDRYGKKGLNQAGAS----------------QSDFSDFF---EDLGSFFEDAFGFG 101
Query: 119 GRGGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIE 178
RG + + D S G + QS AKDK + +
Sbjct: 102 ARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQ 161
Query: 179 ---------HDLYVTLEDIVRGCTKKMKISRKVLQP--DGTSKKEDKVLTINVKPGWKAG 227
+++ C K KI + Q T +D+ + + G
Sbjct: 162 CNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQ 221
Query: 228 TKITFQKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPT 287
++ + +G++ + D+ R K FKREG DL A V G + VP+
Sbjct: 222 NRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPS 281
Query: 288 LTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDIL 347
L G+++ L + + +G+ P E +G L+V + +P +L+++ +++L
Sbjct: 282 LKGDELELKIPRN-ARDRQTFAFRNEGVKHP-ESSYRGSLIVELQVIYPKSLNKEQQELL 339
Query: 348 YDL 350
L
Sbjct: 340 EKL 342
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 109 bits (274), Expect = 6e-27
Identities = 54/126 (42%), Positives = 68/126 (53%), Gaps = 23/126 (18%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
M +YY ILG+++ A DE+K+AYR+LA KYHPD NK AE++FKE+ AYEVLSD +
Sbjct: 1 MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPET 60
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFE--FPGSG 118
R YD++GE G+ SG G G F FE F G G
Sbjct: 61 RARYDQFGEAGV-SGAAG--------------------FPDMGDMGGFADIFETFFSGFG 99
Query: 119 GRGGPG 124
G GG G
Sbjct: 100 GAGGQG 105
Score = 67.3 bits (165), Expect = 2e-12
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 210 KKEDKVLTINVKPGWKAGTKITFQKEGDQG-KNKIPADIVFIIRDKPHPLFKREGSDLRY 268
K+ K L IN+ G GT++ EGD G + P D+ + K P F+R+G ++
Sbjct: 212 KQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILS 271
Query: 269 TAKVSLREALTGCVLTVPTLTGEKVNLNLKNEII-----KTNTVKKIPGQGLPFPKEPQK 323
K+S +A+ G L V T+ G E+ + NTV + +G+P P
Sbjct: 272 EIKISYLQAILGDTLEVDTVDGPV-------ELTIPAGTQPNTVLTLENKGVPRLGNPVA 324
Query: 324 KGDLLVSFDIKFPDTLSQQTKDILYDL 350
+GD L++ +K P +S + +++L L
Sbjct: 325 RGDHLITVKVKIPTRISDEERELLEKL 351
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 107 bits (270), Expect = 2e-26
Identities = 59/142 (41%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKK 59
K+YY ILG+++ A+++EIKKAYR+LA KYHPD N +EAE+KFKE+ EAYE+LSD +
Sbjct: 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ 62
Query: 60 KRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFE--FPGS 117
KR YD++G GG G G F D F G F F F
Sbjct: 63 KRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFD-----FDFGGFGDIFEDIFGDFFGTG 117
Query: 118 GGRGGPGFQFGMDEDMDTDDIF 139
R G Q G D D + F
Sbjct: 118 RRRAETGPQKGADIRYDLELTF 139
Score = 67.9 bits (166), Expect = 1e-12
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 207 GTSKKEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIP-ADIVFIIRDKPHPLFKREGSD 265
G ++ K+ +N+ G G IT + EG+ G P D+ +I+ KPHPLFKREG +
Sbjct: 222 GRIRRRRKI-KVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYN 280
Query: 266 LRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKG 325
+ ++ +A G + +PTL G KV + E +T T ++ G+G+P + + +G
Sbjct: 281 VYLEMPITFTDAALGGEIEIPTLDG-KVKFTIP-EGTQTGTKFRLRGKGIPHLRG-RGRG 337
Query: 326 DLLVSFDIKFPDTLSQQTKDIL 347
D +V I+ P L+++ K++L
Sbjct: 338 DQIVKVYIEVPKKLTEKQKELL 359
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 103 bits (259), Expect = 4e-25
Identities = 57/104 (54%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKK 59
M ++YY ILGL+KGAS DEIKKAYRK+A+KYHPDKNK ++EAE FKE EAYEVL D
Sbjct: 1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60
Query: 60 KRDLYDRYGEDGLKSGGP-GLHTGGTENFTSFHGDPRATFAQFF 102
KR YDR+G + GG +GG F+ D F FF
Sbjct: 61 KRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFF 104
Score = 43.8 bits (103), Expect = 8e-05
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 209 SKKEDKVLTINVKPGWKAGTKITFQKEGD-QGKNKIPADIVFIIRDKPHPLFKREGSDLR 267
S K+ + + + + G +I + +G N+ D+ I KPH +FKR G DL
Sbjct: 210 SLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLY 269
Query: 268 YTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDL 327
T +S +A G + + T+ +K+ + + + I +G+P +K G+L
Sbjct: 270 ATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQI-IIKNEGMPI-LHTEKFGNL 327
Query: 328 LVSFDIKFPDTLSQQTKDILYDL 350
++ IK P L+ +L +L
Sbjct: 328 ILIIKIKTPKNLNSNAIKLLENL 350
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 101 bits (252), Expect = 4e-25
Identities = 66/266 (24%), Positives = 92/266 (34%), Gaps = 46/266 (17%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK--SREAEEKFKEVAEAYEVLSDKKK 60
+YY ILG+ AS +EIKKAYRKLALKYHPD+N + AEEKFKE+ EAYE+LSD ++
Sbjct: 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGR 120
R YD+ G D G +F + +
Sbjct: 66 RAEYDKIGADNYFPGKSY------RESAAFPIEGSLQLTGLYEEWR-------------- 105
Query: 121 GGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHD 180
G + + D+ S G + R + +
Sbjct: 106 ---GKRNKTERKASLADLLSRGLSGLAAALSLFADEAALRSGSLRRR--------DLAAN 154
Query: 181 LYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEGDQGK 240
L E+ + G K + K L +K G G + + +
Sbjct: 155 LADNFEEALAGVKKAVARLLG------------KALKSTIKAGALEGKALRLKGLLKSAR 202
Query: 241 NKIPADIVFIIRDKPHPLFKREGSDL 266
K HP F EG D
Sbjct: 203 -GALGKARLKELSKRHPPFALEGDDK 227
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 101 bits (253), Expect = 5e-24
Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 45/199 (22%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSR-EAEEKFKEVAEAYEVLSDKKKR 61
K+YY +LG+ K A++ EIKKAYRKLA +YHPD NK +AEE+FKE++EAY+VLSD+KKR
Sbjct: 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKR 68
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRG 121
YD + R+ F G F PG GG G
Sbjct: 69 KEYD---------------------------EARSLFGN--------GGFRPGPGGGGGG 93
Query: 122 GPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSF-NIHGSPNRAKDKVQDNAIEHD 180
G F G D+F G GG GGG F + R + +E +
Sbjct: 94 GFNFDLG--------DLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESE 145
Query: 181 LYVTLEDIVRGCTKKMKIS 199
+ ++ + + G T ++++
Sbjct: 146 VTLSFTEAIDGATVPLRLT 164
Score = 63.3 bits (154), Expect = 4e-11
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 211 KEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYT 269
K + + + + G G +I + +G G+ PA D+ ++ PHP+F R G +L T
Sbjct: 232 KSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVT 291
Query: 270 AKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLV 329
V+ EA G + VPTL G V + L T + + +G ++ +GDLLV
Sbjct: 292 VPVTFPEAALGAEVRVPTLGGPPVTVKLPP---GTPNGRVLRVRGKGAVRKDGTRGDLLV 348
Query: 330 SFDIKFPDTLSQQTKDIL 347
+ ++ P LS + ++ L
Sbjct: 349 TVEVAVPKDLSGKAREAL 366
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 98.3 bits (245), Expect = 5e-23
Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 10/109 (9%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKN--KSREAEEKFKEVAEAYEVLSDKKK 60
K+YY ILG+++ A+ +EIK+AY++L ++HPD++ +EAE+KFKE+ EAYEVLSD +K
Sbjct: 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK 63
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGT------ENFTSFHGDPRATFAQFFG 103
R +YDR+G G + +GG ++F + R F FFG
Sbjct: 64 RAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFN--RDIFDIFFG 110
Score = 66.7 bits (163), Expect = 3e-12
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 217 TINVKPGWKAGTKITFQKEGDQGKNKIP-ADIVFIIRDKPHPLFKREGSDLRYTAKVSLR 275
T+ + G + GT + G+ G P D+ I+R +P P FKR GSDL Y +
Sbjct: 228 TVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYL 287
Query: 276 EALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKF 335
+A+ G + VP G L + + TV ++ G+GLP ++GDL+V+ ++
Sbjct: 288 QAILGTTVEVPLPEGGTTMLKIPPG-TQPETVFRLKGKGLP-NMRYGRRGDLIVNVHVEI 345
Query: 336 PDTLSQQTKDILYDL 350
P LS++ + +L +L
Sbjct: 346 PKRLSREERKLLKEL 360
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 97.1 bits (242), Expect = 2e-22
Identities = 65/192 (33%), Positives = 86/192 (44%), Gaps = 36/192 (18%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
K++Y LG++ AS +EIKKAYRKLA + HPD N AEE+FK V+EA++VLSD KR
Sbjct: 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRG 121
YD + R FA FG F G GG G
Sbjct: 69 KEYD---------------------------ETRRLFA-----GGGFGGRR-FDGGGGFG 95
Query: 122 GPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDL 181
G G G + + +D+F G R GG G G FN G R + N +E +
Sbjct: 96 GFGTG-GDGAEFNLNDLFDAAG-RGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETET 153
Query: 182 YVTLEDIVRGCT 193
+ + +G T
Sbjct: 154 TLDFVEAAKGVT 165
Score = 60.1 bits (146), Expect = 4e-10
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 217 TINVK--PGWKAGTKITFQKEGDQGKNKIPA-DIVFIIRDKPHPLFKREGSDLRYTAKVS 273
TINV+ PG + G +I +G+ G P+ D+ + +P +F R+G DL T VS
Sbjct: 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVS 302
Query: 274 LREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDI 333
E G L+VPTL G V + + + ++ G+G+ PK GDLLV+ +
Sbjct: 303 FTELALGSTLSVPTLDG-PVGVKVPAGTADGRIL-RVRGRGV--PKRSGGAGDLLVTVKV 358
Query: 334 KFPDTLS 340
P L
Sbjct: 359 AVPPNLD 365
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 93.3 bits (231), Expect = 1e-20
Identities = 38/70 (54%), Positives = 54/70 (77%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
++YY +LG+++ A + EIKKA+RKLA KYHPD+NK+ +A F E+ EA +VLS+ KKR
Sbjct: 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61
Query: 63 LYDRYGEDGL 72
YD+YG DG+
Sbjct: 62 NYDKYGHDGV 71
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 81.8 bits (203), Expect = 1e-19
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 265 DLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKK 324
DL T +SL+EAL G + VPTL G KV + + + +I G+G+P K +
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIP-AGTQPGDKLRIKGKGMPINKGGNGR 59
Query: 325 GDLLVSFDIKFPDTLSQQTKDI 346
GDL+V+ ++K P LS + K++
Sbjct: 60 GDLIVTLNVKIPKKLSSEQKEL 81
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 75.4 bits (185), Expect = 6e-15
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 6 YAILGLNKGASDDEIKKAYRKLALKYHPDK-----NKSR-EAEEKFKEVAEAYEVLSDKK 59
Y ILG+++ S+ +IKK YR L++K+HPDK N+ R E EEK+K + +AY +L+DKK
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 60 KRDLYDRYGE-DGLKSGGPGL 79
+R+ Y YG D + G+
Sbjct: 161 RRENYLNYGTPDSPQHTSEGI 181
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 67.1 bits (163), Expect = 4e-12
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 5 YYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDLY 64
+Y ILG+ A EI + Y KLA Y+P K E KFK++ EAY++L D K+ +Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634
Query: 65 DRYGEDGLKSGG---PGLH--TGGTENFTSFHGDPR-ATFAQFF 102
+++G DG+K P + E F F G P+ T +FF
Sbjct: 635 NKFGYDGIKGVNFIHPSIFYLLASLEKFADFTGSPQIVTLLKFF 678
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 55.6 bits (135), Expect = 7e-09
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 6 YAILGLNKGASDDEIKKAYRKLALKYHPDKNKSRE--------AEEKFKEVAEAYEVLSD 57
Y +LG+++ D EIK+AYRKL ++HPDK ++ A+EK +E+ AYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI-- 260
Query: 58 KKKR 61
KK++
Sbjct: 261 KKQK 264
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 51.6 bits (123), Expect = 3e-07
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 4 NYYAILGLNK---GASDDEIKKAYRKLALKYHPDKNK---SREAEEKFKEVAEAYEVLSD 57
+ YA+LGL+K A +I KA++K KYHPDK ++ +E FK + +A EVL D
Sbjct: 44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103
Query: 58 KKKRDLYDRYGED 70
+K R YD D
Sbjct: 104 RKLRLQYDSNDFD 116
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 43.3 bits (102), Expect = 4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 4 NYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKSREAEEKFKEVA----EAYEVLSD 57
NY+ +LGL + + D ++K Y + +KYHPDK K+ + +E+ +A AY L D
Sbjct: 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62
Query: 58 KKKRDLY 64
KR Y
Sbjct: 63 ALKRAEY 69
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 43.1 bits (102), Expect = 4e-05
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 6 YAILGLNKGASDDEIKKAYRKLALKYHPDKNKSR--------EAEEKFKEVAEAYE 53
+LG+ A D IKKAYRKL + HPDK ++ + +EK +E+ EAYE
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171
Score = 36.2 bits (84), Expect = 0.011
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 4 NYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKS------REAEEKFKEVAEAYEVL 55
+ + + GL + D +K YR+L YHPD+ R+A ++ EV AY+ L
Sbjct: 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61
Query: 56 SDKKKRDLY 64
D R Y
Sbjct: 62 KDPLLRAEY 70
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 41.6 bits (98), Expect = 1e-04
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 9 LGLNKGASDDE--IKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVL--SDKKKRDLY 64
LGL + A + ++KAY + L++HPDK EEK KE+ Y+ S K RDL
Sbjct: 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLD 67
Query: 65 DRYGEDGLKSGGPGLHTGGT 84
+ P + G T
Sbjct: 68 GEEDSSSEEEDVPSGYVGAT 87
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 41.5 bits (98), Expect = 5e-04
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 9 LGLNKGASDDE--IKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVL--SDKKKRDLY 64
LGL A + ++KAY + +YHPDK EEK K + Y+ L K R +
Sbjct: 17 LGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---EEKMKRLNSLYKKLQEGVKSARQSF 73
Query: 65 D 65
Sbjct: 74 G 74
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 36.4 bits (84), Expect = 0.004
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 6 YAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVL 55
Y IL ++ AS + I++A+++L L+ HPD S K V EA ++L
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASK---VNEAKDLL 114
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat
shock cognate protein) of a pair of proteins
Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
proteins, which also serve as molecular chaperones.
Hsc20, unlike DnaJ, appears not to have chaperone
activity on its own, but to act solely as a regulatory
subunit for Hsc66 (i.e., to be a co-chaperone). The
gene for Hsc20 in E. coli, hscB, is not induced by heat
shock [Protein fate, Protein folding and
stabilization].
Length = 155
Score = 35.2 bits (81), Expect = 0.017
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 20 IKKAYRKLALKYHPDKNKS----REAEEKFKEVAEAYEVLSDKKKRDLY 64
++K YR+L +YHPD + A ++ + +AY L D +R Y
Sbjct: 8 LRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 34.1 bits (78), Expect = 0.060
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 18 DEIKKAYRKLALKYHPDK------NKSREAEEKFKEVAEAYEVLSDKKKRDLY 64
D++ YR+LA + HPD+ + R A E+ + EAY+ L +R Y
Sbjct: 21 DQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 33.1 bits (76), Expect = 0.11
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 4 NYYAILGLNKGASDDE--IKKAYRKLALKYHPDK-NKSREAEEKFKEVA--------EAY 52
+++++ GL + DE + AYR + + HPD+ + +AE K VA EAY
Sbjct: 7 DHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAE---KRVAMQWATRANEAY 63
Query: 53 EVLSDKKKRDLY 64
+ L D KR Y
Sbjct: 64 QTLRDPLKRARY 75
>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation,
ribosomal structure and biogenesis].
Length = 125
Score = 30.8 bits (70), Expect = 0.41
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 11 LNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
L +GASD+++KKA + DK+ +K +E E K
Sbjct: 64 LVRGASDEKVKKANEAAGVLAKLDKSAKNLETKKVREPLTDAERFKVMKLVK 115
>gnl|CDD|225917 COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of
Phe-aaRS-beta [General function prediction only].
Length = 229
Score = 29.2 bits (66), Expect = 2.8
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 12 NKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKK---KRDLYDRYG 68
+ SD+ + KA+R ++ K+R + E A VL + D Y
Sbjct: 54 PETLSDEPVVKAWRDAYWRFGIKPTKTRPSAE-----ALLRRVLKGNSLPRINPVVDIYN 108
Query: 69 EDGLKSGGPGLHTGGTENFTSFHGDPRATFA 99
LK P G + GD R T A
Sbjct: 109 AASLKYAVP----IGGYDADKIVGDLRLTLA 135
>gnl|CDD|227714 COG5427, COG5427, Uncharacterized membrane protein [Function
unknown].
Length = 684
Score = 29.1 bits (65), Expect = 3.8
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 39 REAEEKFKEVAEAYEVLSDKKKRDLYDRYG 68
E++ K+V Y K+ ++ ++Y
Sbjct: 610 AAVEQRVKDVRVVYSTTDAAKRAEILEKYD 639
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 29.2 bits (65), Expect = 4.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 210 KKEDKVLTINVKPGW------KAGTKITFQKEGDQGKNKIP 244
K E KVL VKPGW +A ++ K+GD+G+ +P
Sbjct: 447 KTEGKVL---VKPGWLAIYGKEAANEVEDAKDGDKGQPLVP 484
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 29.2 bits (65), Expect = 4.4
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 103 GSSSPFGAFFEFPGSGGRGGPGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIH 162
G P A G G RG G MG GGPG + QS N+
Sbjct: 68 GMPDPINALQNLTGQGTRGPQMGPMGPGPGR------PMGQQM-GGPGTASNLLQSLNVR 120
Query: 163 GSP 165
G
Sbjct: 121 GQM 123
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 28.6 bits (64), Expect = 4.4
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 315 LPF-PKEPQKKGDLLVSFDIKFPDTLSQQTKDILYDLL 351
LPF ++ +K +L++ +I+FP TLS + K +L LL
Sbjct: 193 LPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLL 230
>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This
model describes the bacterial and chloroplast form of
MinD, a multifunctional cell division protein that
guides correct placement of the septum. The homologous
archaeal MinD proteins, with many archaeal genomes
having two or more forms, are described by a separate
model [Cellular processes, Cell division].
Length = 261
Score = 28.5 bits (64), Expect = 5.2
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 283 LTVPTLTGEKVNLNLKNEIIKT--NTVKKIPGQGLPFPK-EPQKKG 325
+ V T GE V LN K+ K N ++I G+ +PF QKKG
Sbjct: 207 IIVSTNKGEPVVLNDKSRAGKAFENIARRILGEEVPFEDLTTQKKG 252
>gnl|CDD|205895 pfam13720, Acetyltransf_11, Udp N-acetylglucosamine
O-acyltransferase; Domain 2. This is domain 2, or the
C-terminal domain, of Udp N-acetylglucosamine
O-acyltransferase. This enzyme is a zinc-dependent
enzyme that catalyzes the deacetylation of
UDP-3-O-((R)-3-hydroxymyristoyl)-N-acetylglucosamine to
form UDP-3-O-(R-hydroxymyristoyl)glucosamine and
acetate.
Length = 82
Score = 26.6 bits (60), Expect = 5.4
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 4 NYYAILGLNK------GASDDEI---KKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEV 54
N + GLN G S +EI K+AYR L Y EE +E ++ EV
Sbjct: 11 NPARLRGLNLVGLKRRGFSKEEIRALKRAYRLL---YRSGLTLEEALEELEEEAPDSPEV 67
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 28.5 bits (64), Expect = 5.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 107 PFGAFFEFPGSGGRGGPGFQFGMD 130
P GAF+ FP G F F +D
Sbjct: 313 PTGAFYLFPSIGHFTMSSFDFALD 336
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 28.5 bits (63), Expect = 6.3
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 315 LPFPKEPQKK-GDLLVSFDIKFPDTLSQQTKDILYDLL 351
LPF + +K +L++ DIKFP TLS K +L LL
Sbjct: 193 LPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLL 230
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 28.7 bits (64), Expect = 6.6
Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 26/161 (16%)
Query: 83 GTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGGPGFQFGMDEDMDTDDIFSMG 142
+S + A + A G GG G GF G G
Sbjct: 48 SASASSSATSSSASLVANGAVALLSASAISGGGGGGGGGFGGFGGG-------------G 94
Query: 143 GPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDLYVTLEDIVRGCT--KKMKIS- 199
G GG GG F + F + A ++ + H L V + + + K+ K+S
Sbjct: 95 GGGGGGGGGWRFWLRLFA--PADAHADEEQSGDWDSHGLPVNITVPLSKLSGFKRYKVSE 152
Query: 200 -----RKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKE 235
R+ GT +++T+ +PG TK QKE
Sbjct: 153 IEFFDRRRNTTVGTEDSFFEMVTL--RPGGVY-TKAQLQKE 190
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 28.5 bits (64), Expect = 7.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 2 GKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKR 61
KN +L L G S++ I+ AY + L+ K + E+ +E E +KK+R
Sbjct: 219 SKNVDRLLRL-LGFSEEVIESAYELIKLRR---KLYGEKRAERVREELREVEREREKKRR 274
Query: 62 DL 63
L
Sbjct: 275 KL 276
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 28.4 bits (64), Expect = 7.9
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 2 GKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKK 59
KN +L L G S+++I+KA + LK K E EK +E+ E L DKK
Sbjct: 217 SKNIDKLLYL-LGFSEEDIEKAMELIRLK-----RKYEEIYEKIRELEEKIAELKDKK 268
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.9 bits (63), Expect = 9.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 18 DEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
DEI K R+L + K+ E E K + +A E KKK
Sbjct: 587 DEIIKELRQLQKGGYAS-VKAHELIEARKRLNKANEKKEKKKK 628
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.138 0.404
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,460,531
Number of extensions: 1833607
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1548
Number of HSP's successfully gapped: 125
Length of query: 352
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 254
Effective length of database: 6,590,910
Effective search space: 1674091140
Effective search space used: 1674091140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.4 bits)