RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7265
(352 letters)
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 248 bits (635), Expect = 9e-83
Identities = 98/180 (54%), Positives = 133/180 (73%), Gaps = 2/180 (1%)
Query: 174 DNAIEHDLYVTLEDIVRGCTKKMKISRKVLQPDG-TSKKEDKVLTINVKPGWKAGTKITF 232
D + HDL V+LE+I GCTKKMKIS K L PDG + + EDK+LTI VK GWK GTKITF
Sbjct: 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITF 61
Query: 233 QKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEK 292
KEGDQ N IPADIVF+++DKPH +FKR+GSD+ Y A++SLREAL GC + VPTL G
Sbjct: 62 PKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRT 121
Query: 293 VNLNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDILYDLLP 352
+ + ++I+ +K+PG+GLP PK P+K+GDL++ F++ FP+ + Q ++ +L +LP
Sbjct: 122 IPVV-FKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 244 bits (626), Expect = 2e-81
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 176 AIEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKE 235
+ E L VTLE++ G KK+K++RK + E+ ++ + +KPGWK GTK+T+ E
Sbjct: 5 SHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKV-RNEENIVEVEIKPGWKDGTKLTYSGE 63
Query: 236 GDQGK-NKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVN 294
GDQ P D+V II+ K HP F R+ L + L ALTG V TL +
Sbjct: 64 GDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQ 123
Query: 295 LNLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDILYDLL 351
+ + EI+ T K +P +G+P +P +KGDL++ FDI FP +L+ + K ++ + L
Sbjct: 124 IPI-KEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 237 bits (606), Expect = 2e-78
Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 6/172 (3%)
Query: 177 IEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEG 236
++ +L V+LED+ G K KI RK E + I +KPGWKAGTKIT++ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRKG----PHGASEKTQIDIQLKPGWKAGTKITYKNQG 58
Query: 237 DQGKNK-IPADIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNL 295
D + F+I++K HP FKR+G DL YT +S +E+L G T+ T+ G + L
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 296 NLKNEIIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDIL 347
+ + ++ + PGQG+P PK P ++G+L+V + + +P +L+ K +
Sbjct: 119 SR-VQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 238 bits (609), Expect = 9e-77
Identities = 85/347 (24%), Positives = 132/347 (38%), Gaps = 66/347 (19%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
K+YYAILG+ IK AYR+LA KYHPD +K +AE KFK++AEA+EVL D+++R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 63 LYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGG 122
YD+ + G
Sbjct: 88 EYDQLWQHR-------------------------------------------NDPGFGRQ 104
Query: 123 PGFQFGMDEDMDTDDIFSMGGPRAGGPGGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDLY 182
D DDIFS + ++ ++ +
Sbjct: 105 RQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIE----------------VA 148
Query: 183 VTLEDIVRGCTKKMKISRKVLQPDGTSKKED-KVLTINVKPGWKAGTKITFQKEGDQGKN 241
V LE+ + T+ + + V G + E K L + + G G +I + +G G+N
Sbjct: 149 VFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGEN 208
Query: 242 KIPA-DIVFIIRDKPHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNE 300
P D+ +I PHPLF G +L ++ EA G +TVPTL + L +
Sbjct: 209 GGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPG 267
Query: 301 IIKTNTVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDIL 347
+ +I G+GL GDL I P ++ +++
Sbjct: 268 -SQAGQRLRIKGKGLVSKTHT---GDLFAVIKIVMPTKPDEKARELW 310
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 155 bits (394), Expect = 5e-48
Identities = 53/76 (69%), Positives = 66/76 (86%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
MGK+YY LGL +GASD+EIK+AYR+ AL+YHPDKNK AEEKFKE+AEAY+VLSD +K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 61 RDLYDRYGEDGLKSGG 76
R+++DRYGE+GLK G
Sbjct: 61 REIFDRYGEEGLKGSG 76
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 145 bits (368), Expect = 7e-44
Identities = 50/95 (52%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 5 YYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS--REAEEKFKEVAEAYEVLSDKKKRD 62
YY IL + + AS D+IKKAYR+ AL++HPDKN AE+KFKEVAEAYEVLSDK KR+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 63 LYDRYGEDGLKSGGPG---LHTGGTENFTSFHGDP 94
+YDRYG +GL G G G H
Sbjct: 64 IYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHHH 98
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 143 bits (363), Expect = 6e-43
Identities = 46/98 (46%), Positives = 64/98 (65%), Gaps = 6/98 (6%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKK 59
G++ Y +LGL+K A+ D+IKK+YRKLALKYHPDKN + EA +KFKE+ A+ +L+D
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 60 KRDLYDRYGEDGLKSGGPGLHTGGTENFTS-FHGDPRA 96
KR++YD+YG GL G EN + F P +
Sbjct: 75 KRNIYDKYGSLGLYVAEQ----FGEENVNTYFVSGPSS 108
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 145 bits (366), Expect = 5e-42
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
+N+Y++LG++K AS EI++A++KLALK HPDKN + A F ++ AYEVL D+ R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSG 118
YD+YGE GL+ G E+++ + D + F SG
Sbjct: 62 KKYDKYGEKGLEDNQG----GQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSG 114
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 140 bits (355), Expect = 5e-42
Identities = 48/78 (61%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK--SREAEEKFKEVAEAYEVLSDKKK 60
NYY +LG+ AS ++IKKAYRKLAL++HPDKN EAE+KFK V+EAYEVLSD KK
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 61 RDLYDRYGEDGLKSGGPG 78
R LYDR G D ++GG
Sbjct: 69 RSLYDRAGCDSWRAGGGA 86
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 145 bits (369), Expect = 6e-42
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 211 KEDKVLTINVKPGWKAGTKITFQKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTA 270
E K+L ++V+PG K G +I F+ E DQ + IP D+VFI+ ++PH FKR+G DL Y A
Sbjct: 109 NERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEA 168
Query: 271 KVSLREALTGCVLTVPTLTGEKVNLNLK-NEIIKTNTVKKIPGQGLPFPKEPQKKGDLLV 329
++ L A+ G + ++G+ + + + E+I K I G+G+P PK G+L++
Sbjct: 169 EIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGG-YGNLII 227
Query: 330 SFDIKFPDTLSQQTKDIL 347
F IK P+ +++
Sbjct: 228 KFTIKDPENHFTSEENLK 245
Score = 40.3 bits (95), Expect = 4e-04
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 165 PNRAKDKVQDNAIEHDLYVTLEDIVRGCTKKMKISRKVL 203
P R KD I+H++ +LE++ +G T K+ +++++L
Sbjct: 8 PQRGKD------IKHEISASLEELYKGRTAKLALNKQIL 40
Score = 27.9 bits (63), Expect = 3.9
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 260 KREGSDLRYTAKVSLREALTGCV--LTVPT 287
+ G D+++ SL E G L +
Sbjct: 8 PQRGKDIKHEISASLEELYKGRTAKLALNK 37
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 138 bits (349), Expect = 4e-41
Identities = 33/73 (45%), Positives = 53/73 (72%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
+ + Y +LG+++ AS +IKKAY+KLA ++HPDKNK AE++F ++++AYE+LS+++K
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74
Query: 61 RDLYDRYGEDGLK 73
R YD YG
Sbjct: 75 RTNYDHYGSGPSS 87
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 138 bits (349), Expect = 2e-40
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS-------REAEEKFKEVAEAYEVL 55
K++Y+ILG + A+ ++K+ Y+KL L YHPDK + E +KF E+ +A+++L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 56 SDKKKRDLYDRYG-EDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSS 105
+++ + YD ED L++ GP E + GD + G
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGK 120
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 135 bits (343), Expect = 2e-40
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
+YY ILG+++GASD+++KKAYR+LALK+HPDKN + A E FK + AY VLS+ +KR
Sbjct: 7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 63 LYDRYGEDGLK 73
YD++G
Sbjct: 67 QYDQFGSGPSS 77
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 135 bits (341), Expect = 5e-40
Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK--SREAEEKFKEVAEAYEVLSDKKK 60
+YY +L + + AS + IKKAYRKLALK+HPDKN EAE +FK+VAEAYEVLSD KK
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 61 RDLYDRYGEDGLK 73
RD+YDRYG
Sbjct: 69 RDIYDRYGSGPSS 81
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 133 bits (336), Expect = 3e-39
Identities = 43/76 (56%), Positives = 53/76 (69%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
+YY ILG+ K AS+ +IKKA+ KLA+KYHPDKNKS +AE KF+E+AEAYE LSD +R
Sbjct: 7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66
Query: 63 LYDRYGEDGLKSGGPG 78
YD G SG
Sbjct: 67 EYDTLGHSAFTSGKGQ 82
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 132 bits (333), Expect = 9e-39
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
Y +LG++ A++ E+KK YRK ALKYHPDK EKFKE++EA+E+L+D +KR+
Sbjct: 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKRE 65
Query: 63 LYDRYGEDGLKSGGPGLHTGG 83
+YD+YG + +SGGP GG
Sbjct: 66 IYDQYGLEAARSGGPSFGPGG 86
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 130 bits (328), Expect = 3e-38
Identities = 39/68 (57%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
YY +LG+ ASD+E+KKAYRK+ALK+HPDKN + E+FK++++AYEVLSD+KKR
Sbjct: 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP--DGAEQFKQISQAYEVLSDEKKRQ 65
Query: 63 LYDRYGED 70
+YD+ GE+
Sbjct: 66 IYDQGGEE 73
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 129 bits (325), Expect = 2e-37
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
Y +LG+ A+ +IK AY + YHPD+N S EA E+F +++AY VL R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 62 DLYDRYGEDGLKSGGPG 78
YDR GPG
Sbjct: 77 RKYDRGLLSDEDLRGPG 93
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 126 bits (318), Expect = 1e-36
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
+YY ILG+ + AS EIKKAY +LA KYHPD NK +A+EKF ++AEAYEVLSD+ KR
Sbjct: 7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
Query: 62 DLYDRYGEDG 71
YD YG
Sbjct: 67 KQYDAYGSGP 76
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 127 bits (320), Expect = 1e-36
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
++YY +LG ++ +S ++I ++ AL+ HPDK+ + +A E F+++ +A E+L++++ R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFG 109
YD + + + F + +S P
Sbjct: 80 ARYDHWR-----------RSQMSMPFQQWEA-----LNDSVKTSGPSS 111
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 126 bits (318), Expect = 2e-36
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-SREAEEKFKEVAEAYEVLSDKKKR 61
++YY ILG++K A + EI+KAY++LA+KYHPD+N+ +EAE KFKE+ EAYEVL+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 62 DLYDRYGEDGLK-SGGPGLHTGGTENFTSFHGDPRATFAQFFG 103
YD+YG + G G GG +F+ GD F FG
Sbjct: 63 AAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGD---VFGDIFG 102
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 124 bits (312), Expect = 1e-35
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNK-------SREAEEKFKEVAEAYE 53
+ K++Y+ILG + A+ ++K+ Y+KL L YHPDK E +KF E+ +A++
Sbjct: 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 54 VLSDKKKRDLYDRYGEDG 71
+L +++ + YD
Sbjct: 74 ILGNEETKKKYDLQRSGP 91
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 123 bits (311), Expect = 3e-35
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 1 MGK-NYYAILGLNKGASD-DEIKKAYRKLALKYHPDKNKS----REAEEKFKEVAEAYEV 54
G N Y +L +N+ D ++ KAYR LA K+HPD+ K+ AEE+F+ +A AYE
Sbjct: 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYET 71
Query: 55 LSDKKKRDLYDRYGEDG 71
L D + + YD Y +
Sbjct: 72 LKDDEAKTNYDYYLDHP 88
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 117 bits (296), Expect = 3e-33
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRD 62
K+ + +LG+ GAS DE+ KAYRKLA+ HPDK + +E+ FK V A L K
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86
Query: 63 LYD 65
Sbjct: 87 PSS 89
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 117 bits (295), Expect = 3e-33
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSR--EAEEKFKEVAEAYEVLSDK 58
+ K +++ + E KK R+L LK+HPDKN A E FK + L
Sbjct: 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE-- 71
Query: 59 KKRDLYDRYGEDGLKSG 75
K+ D+ + +
Sbjct: 72 -KQAFLDQNADRASRRT 87
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 114 bits (287), Expect = 2e-31
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 259 FKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLK-NEIIKTNTVKKIPGQGLPF 317
FKR+G DL Y A++ L A+ G + ++G+ + + + E+I K I G+G+P
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 318 PKEPQKKGDLLVSFDIKFPD--TLSQQTKDILYDLLP 352
PK G+L++ F IKFP+ S++ L ++LP
Sbjct: 62 PKYGG-YGNLIIKFTIKFPENHFTSEENLKKLEEILP 97
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 115 bits (290), Expect = 2e-31
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 3 KNYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
+LGL + A + ++KAY K ++HPDK EEK K++ Y+ + D K
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVK 67
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENF-TSFHGDP 94
+G + + +
Sbjct: 68 YAHQPDFGGFWDATEVFA--SSLNPGVDAIYCKQW 100
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 113 bits (284), Expect = 3e-31
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 3 KNYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
+LGL + A + ++KAY K ++HPDK EEK K++ Y+ + D K
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVK 64
Query: 61 RDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGD 93
+G + P GT+ + +
Sbjct: 65 YAHQPDFGGFWDATEIPT---YGTDEWEQWWNA 94
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 103 bits (260), Expect = 5e-25
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS----REAEEKFKEVAEAYEVLSDK 58
++YY ILG+ + A EI KAYRKLAL++HPD ++ ++AE+KF ++A A EVLSD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 59 KKRDLYDR 66
+ R +D
Sbjct: 442 EMRKKFDD 449
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 102 bits (255), Expect = 5e-24
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKN-KSREAEEKFKEVAEAYEVLSDKKKR 61
+N+Y++LG++K AS EI++A++KLALK HPDKN + A F ++ AYEVL D+ R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 62 DLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPG 116
YD+YGE GL+ G + + F A
Sbjct: 81 KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 135
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 83.5 bits (206), Expect = 3e-19
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 1 MGKNYYAILGLNKGA-------SDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYE 53
+Y + ++K YR+L ++HPD + E+ + +AY
Sbjct: 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYH 66
Query: 54 VLSDKKKRDLYDRYGEDGLKSGGPGLHTGGTENFTSF 90
L D +R Y + T +
Sbjct: 67 TLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQL 103
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 80.7 bits (199), Expect = 2e-18
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 3 KNYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKS------REAEEKFKEVAEAYEV 54
NY+ + GL D + +R L ++HPD + A ++ ++ +AY+
Sbjct: 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQT 63
Query: 55 LSDKKKRDLYDRY 67
L D +R Y
Sbjct: 64 LKDPLRRAEYLLS 76
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 80.7 bits (198), Expect = 3e-18
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 2 GKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSRE----AEEKFKEVAEAYEVLSD 57
G+ + +G+ + +++KK YRK L HPDK + A+ F E+ +A+ +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175
Query: 58 KKKRDLY 64
+ ++ LY
Sbjct: 176 QGQKPLY 182
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 79.6 bits (196), Expect = 5e-18
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 4 NYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKS------REAEEKFKEVAEAYEVL 55
+Y+ + GL D + ++ L +YHPDK S A ++ + +A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 56 SDKKKRDLYDRY 67
R Y
Sbjct: 62 RHPLMRAEYLLS 73
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 72.3 bits (177), Expect = 2e-16
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 3 KNYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
+ +L L + D +++AY++ +L HPDK S +E+ + +
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVY 67
Query: 61 RDLYDRYG 68
+ G
Sbjct: 68 NLRMNLGG 75
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 66.6 bits (163), Expect = 2e-14
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 5 YYAILGLNKGA-SDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKR 61
IL L + + ++K+ +RK+ L HPDK S ++ EA + L +
Sbjct: 16 ALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS 70
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 70.1 bits (171), Expect = 2e-14
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 3 KNYYAILGLNKG--ASDDEIKKAYRKLALKYHPDKNKS------REAEEKFKEVAEAYEV 54
++Y++++ N+ +++ Y++L HPD +E+ V +AY+
Sbjct: 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102
Query: 55 LSDKKKRDLYD 65
L R LY
Sbjct: 103 LLAPLSRGLYL 113
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 66.4 bits (163), Expect = 6e-14
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 255 PHPLFKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQG 314
HPLF G +L ++ EA G +TVPTL + L + + +I G+G
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPG-SQAGQRLRIKGKG 60
Query: 315 LPFPKEPQKKGDLLVSFDIKFPDTLSQQTKDILYDL 350
L GDL I P ++ +++ L
Sbjct: 61 LVSKTHT---GDLFAVIKIVMPTKPDEKARELWQQL 93
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 63.1 bits (153), Expect = 5e-13
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 6 YAILGLNKGASDDEIKKAYRKLALKYHPDKNKSRE----AEEKFKEVAEAYEVLSDK 58
+ +G+ + +++KK YRK L HP K + A+ F E+ +A+ ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 60.8 bits (147), Expect = 6e-12
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 6 YAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAE-AYEVLSDKKKRDLY 64
+ + L + ++K+Y++ L HPDK + + A K +AE +E+L + +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEA-----W 97
Query: 65 DRYGEDG 71
D + G
Sbjct: 98 DHFNTLG 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-05
Identities = 51/284 (17%), Positives = 81/284 (28%), Gaps = 132/284 (46%)
Query: 168 AKDKVQDNAIEH--DLY-VTLEDIVRGCTKKMKI------SRKVLQ----------PDGT 208
A+D V + A H D Y ++ DIV + I +++ + DG
Sbjct: 1642 AQD-VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 209 SKKEDKVLTINVKPGWKAGTKITFQKEGDQGK-----NKIPADIV------F-IIRDK-- 254
K E IN T TF ++G PA + F ++ K
Sbjct: 1701 LKTEKIFKEINEHS-----TSYTF--RSEKGLLSATQFTQPA-LTLMEKAAFEDLKSKGL 1752
Query: 255 -P-------HPL----------------------FKR-----------EGSDLRYT---- 269
P H L F R E Y
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 270 --AKVSL---REALTGCVLTVPTLTGEK---VNLNLKN----------------EIIKTN 305
+V+ +EAL V V TG VN N++N ++
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 306 TVKKIPGQGLPFPKEPQKKGDLLVSFDIKFPDTLS-QQTKDILY 348
++KI D+ I+ +LS ++ + L+
Sbjct: 1873 KLQKI---------------DI-----IELQKSLSLEEVEGHLF 1896
Score = 41.2 bits (96), Expect = 5e-04
Identities = 63/410 (15%), Positives = 115/410 (28%), Gaps = 172/410 (41%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSR---------EAEEKFKEVAEAYE 53
KNY + + K AL + ++ ++ F+E
Sbjct: 124 KNYITA----RIMAKRPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEE------ 172
Query: 54 VLSDKKKRDLYDRYG---EDGLKSGGPGLHT--GGTENFTSFHG----------DPRATF 98
L RDLY Y D +K L T + +P T
Sbjct: 173 -L-----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 99 AQFFGSSSPFGAFFEFPGSG-----------GRGG--PGFQF--------GMDEDM---- 133
+ + S P P G G PG + G + +
Sbjct: 227 DKDYLLSIP----ISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAV 281
Query: 134 -----DTDDIFSMGGPRA-------GGPGGGAFRSQ-SFNIHGSPNRAKDKVQDNAIEHD 180
D+ + F + +A G R ++ P ++D ++E++
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIG------VRCYEAYPNTSLPPSI---LED-SLENN 331
Query: 181 LYVTLEDI------VRGCTKKMKISRKVLQP--DGTSKK--EDKVLTINVKPGWK----A 226
E + + ++++ +Q + T+ K + I++ G K +
Sbjct: 332 -----EGVPSPMLSISN------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 227 GT------------KITFQKEGDQGKNKIPAD---IVFIIR----DKP-H---------- 256
G K DQ ++IP + F R P H
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 257 -------------------PLFK-REGSDLRYTAKVSLREALTGCVLTVP 286
P++ +GSDLR S+ E + C++ +P
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLR-VLSGSISERIVDCIIRLP 487
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 31.8 bits (73), Expect = 0.075
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 263 GSDLRYTAKVSLREALTGCV--LTVPTL 288
GS +++ +A G TV +
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIM 28
Score = 29.5 bits (67), Expect = 0.55
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 180 DLYVTLEDIVRGCTKKMKISRKV 202
+ +T +G K+ ++
Sbjct: 7 GMELTFNQAAKGVNKEFTVNIMD 29
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.077
Identities = 7/45 (15%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 13 KGASDDEIKKAYRKLALKYHPDKNK--SREAEEKFKEVAEAYEVL 55
+ + ++++ ++ + + +KNK +R A++ F + +A +++
Sbjct: 113 REKAKKDLEEWNQRQSEQV--EKNKINNRIADKAFYQQPDA-DII 154
Score = 29.7 bits (66), Expect = 0.94
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 37 KSREAEEKFKEVAEAYEVLSDKKKRDLYDRYGE 69
S+ E++++E A+ K + R E
Sbjct: 104 ASKVMEQEWREKAK-------KDLEEWNQRQSE 129
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 32.1 bits (72), Expect = 0.19
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 18 DEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDL 63
D + L D+++ +AEE+F++ + +E + + +L
Sbjct: 147 DSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEEL 192
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 32.1 bits (72), Expect = 0.21
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 18 DEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDL 63
D + Y L D+ K +AEE+ + + +E ++ + +L
Sbjct: 161 DSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEEL 206
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 31.7 bits (71), Expect = 0.26
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 18 DEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDL 63
D + + D+ K+ +AEE+F + +E L+ + +L
Sbjct: 142 DSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEEL 187
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A
{Anabaena SP} PDB: 2o3b_A*
Length = 259
Score = 31.6 bits (71), Expect = 0.35
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 173 QDNAIEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITF 232
Q + + LED R + K V P+G+ K K K WK +
Sbjct: 135 QTPDNNRNTWGNLEDYCRELVSQGKELYIVAGPNGSLGKPLKGKVTVPKSTWKIVVVLDS 194
Query: 233 QKEGDQGKNKIPADIVFIIRDKPHPLFKREGSDLRYTAKVSLR--EALTG 280
G +G I I + P +D R KVS+ E+LTG
Sbjct: 195 PGSGLEGITANTRVIAVNIPNDPEL-----NNDWR-AYKVSVDELESLTG 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.36
Identities = 29/238 (12%), Positives = 62/238 (26%), Gaps = 60/238 (25%)
Query: 16 SDDEIKKAYRKLALKYHPDKNKSREA-----EEKFKEVAEAYEVLSDKKKRDLYDRYGED 70
E +K + +L++ + P + + K V++ K L ++ ++
Sbjct: 367 EPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKE 423
Query: 71 GLKSGGPGLH------TGGTENFTSFH-------GDPRATFAQFFGSSSPFGAFFEFPGS 117
S + EN + H P+ + F+
Sbjct: 424 STIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--- 476
Query: 118 GGRGGPGFQFGMDEDMDTDDIFSM--------------GGPRAGGPGGGAFRSQSFNIHG 163
G E + +F M G Q +
Sbjct: 477 -----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY- 530
Query: 164 SPNRAKDKVQDNAIEHDLYV-TLEDIVRGC------TKKMKISRKVLQPDGTSKKEDK 214
K + DN +++ V + D + +K + R L + + E+
Sbjct: 531 -----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 30.2 bits (67), Expect = 1.2
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 4 NY-YAILG--LNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
Y Y+ +G L K E +R + L + + K R + L K
Sbjct: 471 QYFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 61 RDLYDRY 67
Y Y
Sbjct: 530 ---YKPY 533
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 28.3 bits (63), Expect = 0.74
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 8 ILGLNKGASD---DEIKKAYRKLALKYHPDKNKS 38
IL + + D D+I + L +K S
Sbjct: 9 ILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS 42
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.78
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 5/26 (19%)
Query: 194 KKMKISRKVLQPDGTSKKEDKVLTIN 219
KK++ S K+ D L I
Sbjct: 23 KKLQASLKLYADDSAP-----ALAIK 43
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 29.5 bits (66), Expect = 1.6
Identities = 6/47 (12%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 4 NYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAE 50
Y L + +D+ + + +K + + + ++K +++A+
Sbjct: 375 LRYGNFQLYQMKCEDKAIHHFIE-GVKINQKSREKEKMKDKLQKIAK 420
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 30 KYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDLYDRYGEDGLKSGGP 77
+H + + E + +A AY+ + + K LY R L+
Sbjct: 6 IHHHHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK 53
>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase,
2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB
biodegradation; HET: BP3; 1.70A {Burkholderia
xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A
1knf_A 1han_A* 1lkd_A*
Length = 297
Score = 29.5 bits (66), Expect = 1.6
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 51 AYEVLSDKKKRDLYDRYGEDGLKSGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGA 110
EV S +DR DGL + G HT +P G
Sbjct: 211 MLEVASLDDVGFAFDRVDADGLITSTLGRHTND-----------HMVSFYAS---TPSGV 256
Query: 111 FFEFPGSGGR 120
E+ G R
Sbjct: 257 EVEY-GWSAR 265
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 28.7 bits (63), Expect = 2.8
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 18 DEIKKAYRKLALKYH--PDKNKSREAEEKFKEVAEAYEVLSDKKKRDL 63
D + +++ L + D K + E+ +E YE+L+ + +L
Sbjct: 146 DGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDEL 193
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 28.8 bits (64), Expect = 3.6
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 269 TAKVS----LREALTGCVLTV--PTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFPKEPQ 322
A+VS L AL GC TV LT E+ + + + + VK + P
Sbjct: 604 VAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVK------VRMDLVPL 657
Query: 323 KKGD--LLVSFDIKFPDTLSQQTKDI 346
G L+V+F+ S + K +
Sbjct: 658 HMGLHKLVVNFE-------SDKLKAV 676
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 28.1 bits (62), Expect = 4.4
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 32 HPDKNKSREAEEKFKEVAEAYEVLSDKKKRDLYDRYGEDGLKSGGPGLHTGG 83
++E ++K E Y ++D K +L+ +Y E L S + GG
Sbjct: 290 TKHTVVTKEYPLEWKVGDEPYYPVNDNKNMELFKKYRE--LASREDKVIFGG 339
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 27.8 bits (62), Expect = 5.7
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 316 PFPKEPQKKG-----DLLVSFDIKFPDTLSQQTKDILYDLL 351
PF + +K L+ ++ + S Q + + LL
Sbjct: 384 PFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLL 424
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Length = 160
Score = 26.8 bits (59), Expect = 7.0
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 18 DEIKKAYRKLALKYHPDK-NKSREAEEK-FKEVAEAYEVLSDKKKRDL 63
D+ +K + L + DK +AEEK + + S + ++
Sbjct: 67 DDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEY 114
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine
salvage pathway, amino-acid biosynthesis, isomerase,
magnesium, metal- binding; 2.30A {Bacillus subtilis}
Length = 425
Score = 27.3 bits (60), Expect = 7.7
Identities = 13/80 (16%), Positives = 15/80 (18%), Gaps = 2/80 (2%)
Query: 74 SGGPGLHTGGTENFTSFHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGGPGFQFGMDEDM 133
G A F PG + D
Sbjct: 306 CGADFSLFPSPYGS--VALPRADALAIHEECVREDAFNQTFAVPSAGIHPGMVPLLMRDF 363
Query: 134 DTDDIFSMGGPRAGGPGGGA 153
D I + GG G P G
Sbjct: 364 GIDHIINAGGGVHGHPNGAQ 383
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.138 0.404
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,524,379
Number of extensions: 351352
Number of successful extensions: 843
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 86
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.4 bits)