RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7265
(352 letters)
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 101 bits (253), Expect = 8e-28
Identities = 53/76 (69%), Positives = 66/76 (86%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
MGK+YY LGL +GASD+EIK+AYR+ AL+YHPDKNK AEEKFKE+AEAY+VLSD +K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 61 RDLYDRYGEDGLKSGG 76
R+++DRYGE+GLK G
Sbjct: 61 REIFDRYGEEGLKGSG 76
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 92.8 bits (230), Expect = 2e-24
Identities = 39/72 (54%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKSRE-AEEKFKEVAEAYEVLSDKKKR 61
++YY ILG++K A + EI+KAY++LA+KYHPD+N+ + AE KFKE+ EAYEVL+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 62 DLYDRYGEDGLK 73
YD+YG +
Sbjct: 63 AAYDQYGHAAFE 74
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 86.7 bits (214), Expect = 7e-22
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 1 MGKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS-------REAEEKFKEVAEAYE 53
+ K++Y+ILG + A+ ++K+ Y+KL L YHPDK + E +KF E+ +A++
Sbjct: 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 54 VLSDKKKRDLYDRYG 68
+L +++ + YD
Sbjct: 74 ILGNEETKKKYDLQR 88
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 84.2 bits (208), Expect = 6e-21
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 2 GKNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS----REAEEKFKEVAEAYEVLSD 57
G+ + +G+ + +++KK YRK L HPDK + A+ F E+ +A+ +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91
Query: 58 KKKRDLY 64
+ ++ LY
Sbjct: 92 QGQKPLY 98
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 81.6 bits (201), Expect = 4e-20
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 3 KNYYAILGLNKGASDDEIKKAYRKLALKYHPDKNKS--REAEEKFKEVAEAYEVLSDKKK 60
K +++ + E KK R+L LK+HPDKN A E FK + L +K
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EK 72
Query: 61 RDLYDRYGEDGLK 73
+ D+ + +
Sbjct: 73 QAFLDQNADRASR 85
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 81.1 bits (200), Expect = 4e-20
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 177 IEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEG 236
++ +L V+LED+ G K KI RK P G E + I +KPGWKAGTKIT++ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGA--SEKTQIDIQLKPGWKAGTKITYKNQG 58
Query: 237 DQGKNK-IPADIVFIIRDKPHP 257
D + F+I++K HP
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHP 80
Score = 29.5 bits (66), Expect = 0.11
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 265 DLRYTAKVSLREALTGCVLTV------PTLTGEKVNLNLK-NEIIKTNTVKKIPGQGLPF 317
++ VSL + G + P EK ++++ K T QG
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYN 61
Query: 318 PKEPQKKGDLLVSFDIK 334
P+ ++ L K
Sbjct: 62 PQT-GRRKTLQFVIQEK 77
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 80.0 bits (197), Expect = 2e-19
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 259 FKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLKNEIIKTNTVKKIPGQGLPFP 318
FKR+G DL YT +S +E+L G T+ T+ G + L+ + + ++ + PGQG+P P
Sbjct: 2 FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLS-RVQPVQPSQTSTYPGQGMPTP 60
Query: 319 KEPQKKGDLLVSFDIKFPDTLSQQTKDIL 347
K P ++G+L+V + + +P +L+ K +
Sbjct: 61 KNPSQRGNLIVKYKVDYPISLNDAQKRAI 89
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 78.9 bits (194), Expect = 3e-19
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 4 NYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKSREAEEK------FKEVAEAYEVL 55
+Y+ + GL D + ++ L +YHPDK S E+ + +A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 56 SDKKKRDLYD 65
R Y
Sbjct: 62 RHPLMRAEYL 71
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 78.7 bits (193), Expect = 8e-19
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 3 KNYYAILGLNKGA--SDDEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
+LGL + A + ++KAY K ++HPDK E K K++ Y+ + D K
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE---KMKKMNTLYKKMEDGVK 64
Query: 61 RDLYDRYGEDGLKSGGPGLHTGG-TENFTSFHGDPRATFAQFFGSSSPF 108
+G + P T + + +F+ + + S
Sbjct: 65 YAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 75.4 bits (185), Expect = 5e-18
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 3 KNYYAILGLNKGASDD--EIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLSDKKK 60
+ +L L + D +++AY++ +L HPDK + +E+ + +
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVY 67
Query: 61 RDLYDRYG 68
+ G
Sbjct: 68 NLRMNLGG 75
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 70.3 bits (172), Expect = 4e-16
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 259 FKREGSDLRYTAKVSLREALTGCVLTVPTLTGEKVNLNLK-NEIIKTNTVKKIPGQGLPF 317
FKR+G DL Y A++ L A+ G + ++G+ + + + E+I K I G+G+P
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 318 PKEPQKKGDLLVSFDIKFPD 337
PK G+L++ F IK P+
Sbjct: 62 PKYGG-YGNLIIKFTIKDPE 80
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import
protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 57.8 bits (139), Expect = 9e-12
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 13/80 (16%)
Query: 177 IEHDLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEG 236
I+H++ +LE++ +G T K+ ++RK+L ++V+PG K G +I F+ E
Sbjct: 7 IKHEISASLEELYKGRTAKLALNRKIL-------------EVHVEPGMKDGQRIVFKGEA 53
Query: 237 DQGKNKIPADIVFIIRDKPH 256
DQ + IP D+VFI+ ++PH
Sbjct: 54 DQAPDVIPGDVVFIVSERPH 73
Score = 30.4 bits (68), Expect = 0.046
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 261 REGSDLRYTAKVSLREALTGCVLTVPTLTG-EKVNLNLKNEIIKTNTVKKIPGQGLPFPK 319
+ G D+++ SL E G + +V++ +K G+ P
Sbjct: 2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPG---MKDGQRIVFKGEADQAPD 58
Query: 320 EPQKKGDLLVSFDIK 334
GD++ +
Sbjct: 59 --VIPGDVVFIVSER 71
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 31.1 bits (69), Expect = 0.21
Identities = 22/171 (12%), Positives = 37/171 (21%), Gaps = 23/171 (13%)
Query: 30 KYHPDKNKSREAEEKFKEVAEAYEVLSDKKKRDLYDRYGEDGLKSGGPGLHTGGTENFTS 89
D + +E Y+++ G L GT+ +
Sbjct: 61 PRLQDSPSLELKQSLTEEAERLYKLIYGLG------------ATPSGRNLWISGTD-YQR 107
Query: 90 FHGDPRATFAQFFGSSSPFGAFFEFPGSGGRGGPGFQFGMDEDMDTDDIFSMGGPRAGGP 149
GD +G P G+ D M G G
Sbjct: 108 RTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFD----ELMKGGGVG-- 161
Query: 150 GGGAFRSQSFNIHGSPNRAKDKVQDNAIEHDLYVTLEDIVRGCTKKMKISR 200
F NI P ++ + G K ++ +
Sbjct: 162 ----FSVARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQ 208
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 135
Score = 28.2 bits (63), Expect = 0.66
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 180 DLYVTLEDIVRGCTKKMKISRKVLQPDGTSKKEDKVLTINVKPGWKAGTKITFQKEGDQ 238
DL+ + + + K + KK ++ + +K F + +
Sbjct: 27 DLFTVYQIVDKDDELIFKKKFTSKLDEAGKKKSTDLVKLKIKV-----ISEDFDMKDEY 80
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.0 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 36 NKSREAEEKF--KEVAEAYEVLSDKKKRDLYDR 66
KS+EAE K KE+A K D Y +
Sbjct: 15 CKSKEAEIKRINKELANIRSKFKGDKALDGYSK 47
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 126
Score = 26.6 bits (59), Expect = 2.2
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 178 EHDLYVTLEDIVRGCTKKMKISRKVLQPDGTS---KKEDKVLTINVKPGWKAGTKITFQK 234
DL+ + G R+V + ++E +TI +K KI FQ
Sbjct: 20 LDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKV-----EKIEFQD 74
Query: 235 EGDQ 238
++
Sbjct: 75 FDNR 78
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
protein particle complex 5 {Zebrafish (Brachydanio
rerio) [TaxId: 7955]}
Length = 168
Score = 26.4 bits (58), Expect = 3.8
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 221 KPGWKAGTKITFQKEGDQGKNKIPADIVFIIRDKPHPLFKR-----EGSDLRYTAKVS-- 273
WK F KE D+ + D + I +K + E S L A
Sbjct: 71 VNVWK----ALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGI 126
Query: 274 LREALTGC 281
+ LT
Sbjct: 127 VEAILTHS 134
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 25.7 bits (56), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 42 EEKFKEVAEAYEVLSDKKKRDLYDRYGE 69
EE+FK+V + YE+ D K+++ D
Sbjct: 5 EEQFKQVRQLYEINDDPKRKEFLDDLFS 32
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 26.0 bits (56), Expect = 6.4
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 18 DEIKKAYRKLALKYHPDKNKSREAEEKFKEVAEAYEVLS 56
I+ AY+ + E E + E
Sbjct: 213 TAIRNAYKLIYRSGKTLDEVKPEIAELAETYPEVKAFTD 251
>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
{Haemophilus ducreyi [TaxId: 730]}
Length = 154
Score = 25.2 bits (55), Expect = 8.4
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 269 TAKVSLREALTGCVLTVPTLTG---EKVNLNLKNEIIKTNTVKKIPG 312
++SLR LT + + L + K + G
Sbjct: 13 PPRISLRSLLTAQPVKNDHYDSHNYLSTHWELIDYKGKEYEKLRDGG 59
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK
{Bacillus subtilis [TaxId: 1423]}
Length = 152
Score = 25.4 bits (55), Expect = 8.6
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 11 LNKGASDDEIKKAYRKLALKYHPD 34
+GAS + I + L
Sbjct: 19 FTEGASHENIGRIEENLQCDLPNS 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.138 0.404
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,509
Number of extensions: 66455
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 27
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)