Query psy7266
Match_columns 1175
No_of_seqs 798 out of 4928
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:17:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0143 MetG Methionyl-tRNA sy 100.0 3E-117 6E-122 1043.8 50.5 531 280-823 4-557 (558)
2 KOG1247|consensus 100.0 4E-118 8E-123 958.3 28.6 546 272-827 5-566 (567)
3 PLN02610 probable methionyl-tR 100.0 3E-114 6E-119 1073.3 56.1 548 273-826 9-588 (801)
4 PRK00133 metG methionyl-tRNA s 100.0 1E-103 2E-108 979.6 53.6 524 281-826 2-546 (673)
5 PRK12268 methionyl-tRNA synthe 100.0 5E-101 1E-105 944.6 53.3 534 280-825 2-555 (556)
6 TIGR00398 metG methionyl-tRNA 100.0 1.3E-98 3E-103 918.4 51.6 509 283-811 1-530 (530)
7 PLN02224 methionine-tRNA ligas 100.0 2.1E-96 4E-101 888.3 52.3 503 279-823 67-596 (616)
8 PRK12267 methionyl-tRNA synthe 100.0 7.4E-96 2E-100 909.6 50.7 500 280-824 3-524 (648)
9 COG0525 ValS Valyl-tRNA synthe 100.0 3.4E-95 7E-100 874.1 44.2 505 243-778 1-700 (877)
10 TIGR00422 valS valyl-tRNA synt 100.0 3.5E-92 7.6E-97 901.1 45.4 509 243-778 1-701 (861)
11 PRK14900 valS valyl-tRNA synth 100.0 1.5E-89 3.2E-94 879.6 49.2 510 240-777 12-715 (1052)
12 PRK05729 valS valyl-tRNA synth 100.0 3E-89 6.5E-94 872.8 46.4 503 242-777 4-693 (874)
13 PLN02943 aminoacyl-tRNA ligase 100.0 1.8E-87 3.8E-92 855.1 48.0 507 242-777 56-771 (958)
14 PRK13208 valS valyl-tRNA synth 100.0 1.2E-86 2.5E-91 844.2 46.2 507 242-776 5-705 (800)
15 PLN02381 valyl-tRNA synthetase 100.0 1E-86 2.2E-91 851.1 45.6 511 241-777 94-872 (1066)
16 KOG0436|consensus 100.0 7.2E-87 1.6E-91 718.0 36.1 468 279-782 37-532 (578)
17 PRK11893 methionyl-tRNA synthe 100.0 7.2E-86 1.6E-90 805.9 49.2 486 281-812 1-510 (511)
18 PLN02882 aminoacyl-tRNA ligase 100.0 1.6E-85 3.5E-90 843.9 48.6 511 244-777 5-801 (1159)
19 PRK06039 ileS isoleucyl-tRNA s 100.0 1.8E-85 3.9E-90 842.4 47.6 512 242-777 6-772 (975)
20 PTZ00419 valyl-tRNA synthetase 100.0 2.3E-85 5.1E-90 845.7 45.9 518 240-777 21-805 (995)
21 PRK05743 ileS isoleucyl-tRNA s 100.0 2.2E-84 4.8E-89 826.0 43.0 506 242-776 14-769 (912)
22 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.8E-86 3.9E-91 770.9 19.5 371 283-662 1-391 (391)
23 PTZ00427 isoleucine-tRNA ligas 100.0 1.3E-82 2.9E-87 812.4 47.7 510 241-777 66-906 (1205)
24 PRK13804 ileS isoleucyl-tRNA s 100.0 2.2E-82 4.7E-87 808.7 47.2 510 242-777 19-808 (961)
25 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-82 4.3E-87 812.4 44.6 507 243-778 2-792 (861)
26 PLN02843 isoleucyl-tRNA synthe 100.0 4E-81 8.7E-86 796.5 46.8 501 248-777 4-797 (974)
27 COG0060 IleS Isoleucyl-tRNA sy 100.0 8.1E-81 1.8E-85 759.6 35.0 508 242-779 13-782 (933)
28 TIGR00395 leuS_arch leucyl-tRN 100.0 1.2E-79 2.7E-84 784.5 43.4 485 251-778 2-779 (938)
29 KOG0432|consensus 100.0 1.2E-78 2.6E-83 707.8 35.6 513 238-777 37-808 (995)
30 TIGR00396 leuS_bact leucyl-tRN 100.0 8.8E-75 1.9E-79 730.1 41.3 460 247-777 1-759 (842)
31 PRK00390 leuS leucyl-tRNA synt 100.0 5.5E-74 1.2E-78 722.3 43.1 456 243-777 1-723 (805)
32 PLN02563 aminoacyl-tRNA ligase 100.0 3.6E-74 7.9E-79 723.4 40.8 461 240-778 73-876 (963)
33 PLN02959 aminoacyl-tRNA ligase 100.0 3.8E-73 8.2E-78 728.6 45.4 501 241-775 7-877 (1084)
34 COG0495 LeuS Leucyl-tRNA synth 100.0 1.3E-71 2.8E-76 674.6 37.4 461 244-778 2-734 (814)
35 PRK12300 leuS leucyl-tRNA synt 100.0 1.6E-71 3.4E-76 707.1 39.9 445 296-778 1-733 (897)
36 cd00817 ValRS_core catalytic c 100.0 5.7E-69 1.2E-73 626.6 28.1 312 281-637 1-382 (382)
37 KOG0434|consensus 100.0 6.9E-66 1.5E-70 581.1 25.6 507 244-777 5-785 (1070)
38 PF00133 tRNA-synt_1: tRNA syn 100.0 1.7E-66 3.8E-71 638.7 20.7 365 256-638 3-601 (601)
39 cd00814 MetRS_core catalytic c 100.0 3E-65 6.6E-70 583.4 29.2 301 282-637 1-319 (319)
40 KOG0435|consensus 100.0 4.2E-64 9.2E-69 569.0 27.2 460 251-779 34-783 (876)
41 cd00818 IleRS_core catalytic c 100.0 5.1E-62 1.1E-66 559.0 25.9 290 281-637 1-338 (338)
42 KOG0433|consensus 100.0 2.3E-59 5E-64 535.1 37.6 478 279-778 57-798 (937)
43 cd00668 Ile_Leu_Val_MetRS_core 100.0 2.5E-57 5.4E-62 517.9 27.0 280 282-637 1-312 (312)
44 cd00812 LeuRS_core catalytic c 100.0 1.3E-56 2.8E-61 510.2 23.1 280 282-639 1-314 (314)
45 KOG0437|consensus 100.0 8.5E-47 1.8E-51 430.4 26.9 494 249-780 14-873 (1080)
46 PTZ00399 cysteinyl-tRNA-synthe 100.0 8.1E-41 1.8E-45 408.0 34.3 351 282-724 62-437 (651)
47 PRK00260 cysS cysteinyl-tRNA s 100.0 5.3E-41 1.2E-45 399.8 29.9 346 282-725 23-376 (463)
48 PRK14536 cysS cysteinyl-tRNA s 100.0 5E-41 1.1E-45 393.8 28.4 365 279-721 20-404 (490)
49 TIGR00435 cysS cysteinyl-tRNA 100.0 1.9E-39 4E-44 385.2 30.8 346 282-720 21-375 (465)
50 PRK14534 cysS cysteinyl-tRNA s 100.0 7.7E-40 1.7E-44 381.4 26.5 366 281-721 20-397 (481)
51 PRK12418 cysteinyl-tRNA synthe 100.0 9.9E-39 2.1E-43 364.3 26.0 349 280-727 9-366 (384)
52 PLN02946 cysteine-tRNA ligase 100.0 9.7E-39 2.1E-43 377.5 24.3 363 280-725 78-444 (557)
53 TIGR03447 mycothiol_MshC cyste 100.0 9.5E-39 2.1E-43 365.5 23.4 343 278-720 34-386 (411)
54 PRK14535 cysS cysteinyl-tRNA s 100.0 5.5E-37 1.2E-41 362.5 25.1 349 279-722 245-613 (699)
55 PLN02907 glutamate-tRNA ligase 100.0 1.3E-34 2.7E-39 355.5 32.4 480 1-650 3-515 (722)
56 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.5E-33 3.3E-38 320.4 26.3 355 280-725 20-377 (464)
57 PRK01611 argS arginyl-tRNA syn 100.0 4.4E-33 9.6E-38 336.9 26.6 334 279-726 109-468 (507)
58 cd00672 CysRS_core catalytic c 100.0 2.5E-32 5.5E-37 290.9 18.8 194 279-638 19-213 (213)
59 cd00674 LysRS_core_class_I cat 100.0 2.5E-30 5.5E-35 292.8 20.7 272 280-642 18-319 (353)
60 PF01406 tRNA-synt_1e: tRNA sy 100.0 8.8E-31 1.9E-35 284.8 13.7 286 279-645 5-298 (300)
61 TIGR00456 argS arginyl-tRNA sy 100.0 5.2E-29 1.1E-33 304.6 27.7 366 280-760 111-558 (566)
62 KOG2007|consensus 100.0 1.3E-28 2.8E-33 274.2 27.3 367 275-727 49-428 (586)
63 PRK00750 lysK lysyl-tRNA synth 99.9 2.1E-27 4.5E-32 284.7 15.8 269 281-639 23-321 (510)
64 PRK12451 arginyl-tRNA syntheta 99.9 9.4E-23 2E-27 248.5 35.1 335 279-728 111-526 (562)
65 KOG1147|consensus 99.9 5.2E-25 1.1E-29 245.8 13.7 422 49-643 42-496 (712)
66 COG0018 ArgS Arginyl-tRNA synt 99.9 1.7E-22 3.8E-27 242.1 29.0 369 279-760 115-569 (577)
67 PLN02286 arginine-tRNA ligase 99.9 7.6E-21 1.7E-25 231.8 36.1 363 279-760 115-568 (576)
68 TIGR00467 lysS_arch lysyl-tRNA 99.9 2.1E-22 4.5E-27 239.3 21.7 263 281-642 18-317 (515)
69 cd00671 ArgRS_core catalytic c 99.9 6.9E-22 1.5E-26 212.7 19.5 124 282-409 1-124 (212)
70 PRK09481 sspA stringent starva 99.9 1.1E-21 2.5E-26 211.9 17.7 173 1-176 11-203 (211)
71 PLN02473 glutathione S-transfe 99.9 8.4E-22 1.8E-26 213.6 15.5 175 1-176 3-212 (214)
72 PRK10542 glutathionine S-trans 99.9 1.9E-21 4E-26 208.7 18.0 171 1-175 1-197 (201)
73 PRK13972 GSH-dependent disulfi 99.9 2.4E-21 5.1E-26 210.2 17.2 172 1-176 2-206 (215)
74 PLN02395 glutathione S-transfe 99.8 1.6E-20 3.5E-25 203.7 16.0 174 1-176 3-211 (215)
75 PRK10357 putative glutathione 99.8 1.7E-20 3.7E-25 201.4 16.0 172 1-173 1-198 (202)
76 PRK15113 glutathione S-transfe 99.8 7.3E-20 1.6E-24 198.3 17.5 169 1-176 6-209 (214)
77 COG0625 Gst Glutathione S-tran 99.8 6.4E-20 1.4E-24 198.4 16.8 167 1-170 1-199 (211)
78 PRK11752 putative S-transferas 99.8 9.4E-20 2E-24 203.1 18.6 173 1-174 45-257 (264)
79 TIGR01262 maiA maleylacetoacet 99.8 1.3E-19 2.9E-24 195.7 14.8 170 2-175 1-204 (210)
80 KOG0406|consensus 99.8 2.4E-19 5.2E-24 188.2 15.9 176 1-177 10-213 (231)
81 KOG0867|consensus 99.8 3E-19 6.5E-24 193.9 14.8 175 1-176 3-210 (226)
82 PRK10387 glutaredoxin 2; Provi 99.8 6.2E-19 1.4E-23 190.5 13.4 165 1-169 1-207 (210)
83 PTZ00057 glutathione s-transfe 99.8 1.5E-18 3.3E-23 186.6 15.2 172 1-175 5-199 (205)
84 KOG0868|consensus 99.8 7.9E-19 1.7E-23 171.2 10.8 169 2-174 7-206 (217)
85 cd07957 Anticodon_Ia_Met Antic 99.8 1E-17 2.2E-22 166.2 14.7 128 646-775 1-129 (129)
86 PLN02378 glutathione S-transfe 99.7 1.1E-17 2.4E-22 181.0 13.5 162 6-175 17-199 (213)
87 PLN02817 glutathione dehydroge 99.7 3.5E-17 7.6E-22 181.3 14.3 169 7-183 71-259 (265)
88 TIGR02182 GRXB Glutaredoxin, G 99.7 4.7E-17 1E-21 175.4 11.9 162 2-169 1-206 (209)
89 PRK04156 gltX glutamyl-tRNA sy 99.7 2.4E-16 5.2E-21 187.7 17.3 290 274-654 93-409 (567)
90 TIGR00862 O-ClC intracellular 99.7 6.5E-17 1.4E-21 175.1 10.9 167 7-176 17-221 (236)
91 KOG1695|consensus 99.7 4.5E-16 9.7E-21 163.1 15.9 173 1-175 4-200 (206)
92 PF00750 tRNA-synt_1d: tRNA sy 99.7 1.3E-16 2.9E-21 184.5 8.6 253 278-639 17-354 (354)
93 cd07959 Anticodon_Ia_Leu_AEc A 99.7 1.5E-15 3.2E-20 148.1 14.7 114 648-775 3-117 (117)
94 PF01921 tRNA-synt_1f: tRNA sy 99.6 2E-16 4.3E-21 177.2 8.1 266 280-640 22-323 (360)
95 COG1384 LysS Lysyl-tRNA synthe 99.6 6.3E-15 1.4E-19 168.7 16.4 267 281-641 19-319 (521)
96 cd00802 class_I_aaRS_core cata 99.6 3.4E-15 7.3E-20 150.9 12.3 77 285-362 1-77 (143)
97 PLN03233 putative glutamate-tR 99.6 6E-15 1.3E-19 173.6 11.0 283 282-652 10-315 (523)
98 cd09287 GluRS_non_core catalyt 99.5 9.7E-14 2.1E-18 148.8 16.3 96 284-398 2-97 (240)
99 KOG4420|consensus 99.5 2.7E-14 5.8E-19 147.6 10.3 180 1-181 27-293 (325)
100 PRK12410 glutamylglutaminyl-tR 99.5 6.3E-14 1.4E-18 162.7 13.4 271 286-644 2-281 (433)
101 PLN02859 glutamine-tRNA ligase 99.5 4.4E-14 9.5E-19 171.6 12.0 95 284-399 265-359 (788)
102 cd07958 Anticodon_Ia_Leu_BEm A 99.5 1.3E-13 2.9E-18 134.1 12.9 108 652-775 7-117 (117)
103 TIGR00463 gltX_arch glutamyl-t 99.5 2.3E-13 5E-18 162.2 17.3 287 273-651 84-397 (560)
104 cd07960 Anticodon_Ia_Ile_BEm A 99.5 3.3E-13 7.1E-18 142.1 16.6 132 638-777 2-141 (180)
105 COG0008 GlnS Glutamyl- and glu 99.5 3.2E-14 7E-19 166.8 8.5 95 284-399 10-105 (472)
106 PRK12558 glutamyl-tRNA synthet 99.5 2.6E-13 5.7E-18 158.4 14.7 277 284-645 3-288 (445)
107 PRK05347 glutaminyl-tRNA synth 99.5 1.9E-13 4E-18 161.5 13.4 276 284-644 30-332 (554)
108 TIGR00464 gltX_bact glutamyl-t 99.5 2.1E-12 4.6E-17 154.0 22.1 95 284-399 2-97 (470)
109 cd07962 Anticodon_Ia_Val Antic 99.5 7.3E-13 1.6E-17 132.5 14.9 132 637-775 1-135 (135)
110 PTZ00402 glutamyl-tRNA synthet 99.5 3.2E-13 6.9E-18 160.6 14.2 104 273-398 43-147 (601)
111 PRK14703 glutaminyl-tRNA synth 99.5 6E-13 1.3E-17 164.0 16.5 272 284-644 32-335 (771)
112 cd00418 GlxRS_core catalytic c 99.4 4.3E-13 9.3E-18 143.4 12.3 90 284-394 2-92 (230)
113 cd00939 MetRS_RNA MetRS_RNA bi 99.4 6.7E-14 1.4E-18 106.0 4.2 45 1106-1151 1-45 (45)
114 cd00807 GlnRS_core catalytic c 99.4 8.9E-13 1.9E-17 140.8 14.3 94 284-398 2-95 (238)
115 cd07961 Anticodon_Ia_Ile_ABEc 99.4 1.8E-12 3.9E-17 136.8 15.8 137 637-777 1-142 (183)
116 PLN02627 glutamyl-tRNA synthet 99.4 7.8E-13 1.7E-17 156.0 13.7 278 284-645 46-342 (535)
117 cd00939 MetRS_RNA MetRS_RNA bi 99.4 9.1E-14 2E-18 105.3 2.7 45 1036-1080 1-45 (45)
118 PF00458 WHEP-TRS: WHEP-TRS do 99.4 9.5E-14 2.1E-18 112.9 2.9 51 1036-1086 1-51 (56)
119 PF08264 Anticodon_1: Anticodo 99.4 9.1E-13 2E-17 134.9 10.1 90 682-775 1-92 (153)
120 PRK01406 gltX glutamyl-tRNA sy 99.4 4E-12 8.7E-17 151.6 16.6 264 284-628 5-281 (476)
121 TIGR00440 glnS glutaminyl-tRNA 99.4 2.6E-12 5.7E-17 151.8 13.9 95 284-399 1-96 (522)
122 PTZ00437 glutaminyl-tRNA synth 99.4 2.5E-12 5.4E-17 151.7 13.2 95 284-399 52-146 (574)
123 PF00458 WHEP-TRS: WHEP-TRS do 99.4 8.3E-13 1.8E-17 107.4 5.8 51 1106-1157 1-51 (56)
124 PRK14895 gltX glutamyl-tRNA sy 99.3 3.9E-12 8.5E-17 150.0 12.8 278 284-644 5-287 (513)
125 cd00808 GluRS_core catalytic c 99.2 2E-10 4.3E-15 124.1 17.4 90 284-394 2-100 (239)
126 TIGR03838 queuosine_YadB gluta 99.2 2.8E-11 6.1E-16 133.2 10.6 94 285-399 2-96 (272)
127 cd00938 HisRS_RNA HisRS_RNA bi 99.2 2.1E-11 4.5E-16 92.4 4.6 41 1105-1146 2-42 (45)
128 PRK05710 glutamyl-Q tRNA(Asp) 99.2 2.5E-11 5.3E-16 135.1 7.0 95 284-399 6-101 (299)
129 cd00938 HisRS_RNA HisRS_RNA bi 99.2 1.2E-11 2.7E-16 93.7 2.4 40 1035-1074 2-41 (45)
130 cd07375 Anticodon_Ia_like Anti 99.1 3.8E-10 8.3E-15 109.4 12.9 107 652-764 8-117 (117)
131 KOG1422|consensus 99.1 2.4E-10 5.3E-15 116.2 11.4 160 8-175 20-205 (221)
132 PF00749 tRNA-synt_1c: tRNA sy 99.1 1E-10 2.2E-15 132.9 9.3 95 284-399 2-97 (314)
133 KOG4426|consensus 99.1 1.4E-08 3.1E-13 112.4 24.7 333 275-727 182-613 (656)
134 cd03196 GST_C_5 GST_C family, 99.1 2E-10 4.4E-15 111.4 9.2 105 68-172 2-114 (115)
135 cd03045 GST_N_Delta_Epsilon GS 99.1 2.1E-10 4.5E-15 101.9 8.2 65 1-66 1-73 (74)
136 cd03052 GST_N_GDAP1 GST_N fami 99.1 1.9E-10 4.2E-15 101.7 7.8 65 1-66 1-73 (73)
137 KOG3029|consensus 99.1 5.4E-10 1.2E-14 117.2 12.0 163 1-165 91-354 (370)
138 cd03037 GST_N_GRX2 GST_N famil 99.1 1.9E-10 4E-15 101.3 7.3 66 1-66 1-70 (71)
139 cd03060 GST_N_Omega_like GST_N 99.1 3E-10 6.4E-15 100.1 8.5 66 1-66 1-71 (71)
140 cd03051 GST_N_GTT2_like GST_N 99.1 2.9E-10 6.3E-15 100.7 8.3 66 1-66 1-74 (74)
141 cd00936 WEPRS_RNA WEPRS_RNA bi 99.1 6.6E-11 1.4E-15 95.6 3.5 50 1036-1085 1-50 (50)
142 KOG1149|consensus 99.1 1.2E-08 2.6E-13 113.7 21.8 286 284-653 34-338 (524)
143 cd03049 GST_N_3 GST_N family, 99.1 4.6E-10 9.9E-15 99.4 8.2 66 1-66 1-73 (73)
144 COG2999 GrxB Glutaredoxin 2 [P 99.1 8.4E-10 1.8E-14 108.6 10.5 164 1-169 1-207 (215)
145 cd00936 WEPRS_RNA WEPRS_RNA bi 99.1 1.4E-10 3E-15 93.7 4.2 50 1106-1156 1-50 (50)
146 cd03044 GST_N_EF1Bgamma GST_N 99.1 4E-10 8.7E-15 100.4 7.5 65 2-66 2-73 (75)
147 cd03047 GST_N_2 GST_N family, 99.0 8.4E-10 1.8E-14 97.7 8.1 65 1-66 1-73 (73)
148 cd03056 GST_N_4 GST_N family, 99.0 9.3E-10 2E-14 97.3 8.0 65 1-66 1-73 (73)
149 cd03041 GST_N_2GST_N GST_N fam 99.0 8.5E-10 1.8E-14 98.8 7.7 66 1-66 2-74 (77)
150 cd03050 GST_N_Theta GST_N fami 99.0 1.1E-09 2.3E-14 97.9 7.9 65 1-66 1-73 (76)
151 PF13417 GST_N_3: Glutathione 99.0 6.8E-10 1.5E-14 98.9 6.5 63 3-66 1-68 (75)
152 cd03039 GST_N_Sigma_like GST_N 99.0 9.1E-10 2E-14 97.2 7.2 65 1-66 1-71 (72)
153 cd03059 GST_N_SspA GST_N famil 99.0 1.3E-09 2.7E-14 96.5 8.0 65 1-66 1-70 (73)
154 cd03058 GST_N_Tau GST_N family 99.0 1.3E-09 2.9E-14 96.7 8.0 65 1-66 1-71 (74)
155 cd03076 GST_N_Pi GST_N family, 99.0 1.2E-09 2.6E-14 96.8 7.4 65 1-66 2-71 (73)
156 cd03053 GST_N_Phi GST_N family 99.0 1.4E-09 3.1E-14 97.1 7.8 65 1-66 2-74 (76)
157 cd03188 GST_C_Beta GST_C famil 99.0 1.6E-09 3.4E-14 104.7 8.7 98 72-172 2-113 (114)
158 cd03055 GST_N_Omega GST_N fami 99.0 2E-09 4.3E-14 99.3 8.3 66 1-66 19-89 (89)
159 PF02798 GST_N: Glutathione S- 98.9 1.7E-09 3.7E-14 96.5 7.2 66 1-66 1-75 (76)
160 cd03057 GST_N_Beta GST_N famil 98.9 2.5E-09 5.4E-14 95.8 8.3 65 1-66 1-73 (77)
161 cd03186 GST_C_SspA GST_N famil 98.9 2.1E-09 4.6E-14 102.8 8.2 100 71-172 2-106 (107)
162 COG0435 ECM4 Predicted glutath 98.9 2.7E-09 5.8E-14 112.5 9.2 173 1-173 52-284 (324)
163 cd03048 GST_N_Ure2p_like GST_N 98.9 2.7E-09 5.9E-14 96.5 7.9 65 1-66 2-76 (81)
164 cd03040 GST_N_mPGES2 GST_N fam 98.9 2.3E-09 4.9E-14 96.0 7.1 66 1-66 2-73 (77)
165 cd03185 GST_C_Tau GST_C family 98.9 2.2E-09 4.8E-14 105.8 7.5 106 71-176 2-116 (126)
166 cd03189 GST_C_GTT1_like GST_C 98.9 4.6E-09 1E-13 102.5 9.2 98 67-167 2-119 (119)
167 cd03042 GST_N_Zeta GST_N famil 98.9 3.6E-09 7.9E-14 93.5 7.7 65 1-66 1-73 (73)
168 cd03178 GST_C_Ure2p_like GST_C 98.9 2.4E-09 5.3E-14 103.4 7.0 100 72-173 1-112 (113)
169 cd03187 GST_C_Phi GST_C family 98.9 1.9E-09 4.2E-14 104.8 6.2 100 72-172 2-117 (118)
170 cd03190 GST_C_ECM4_like GST_C 98.9 3.9E-09 8.5E-14 106.5 8.3 105 72-176 4-119 (142)
171 cd03177 GST_C_Delta_Epsilon GS 98.9 5.8E-09 1.3E-13 101.7 8.6 100 72-173 2-110 (118)
172 cd03077 GST_N_Alpha GST_N fami 98.9 4.9E-09 1.1E-13 94.3 7.2 65 1-66 2-73 (79)
173 cd03200 GST_C_JTV1 GST_C famil 98.9 6.7E-09 1.4E-13 97.2 8.3 85 66-166 11-96 (96)
174 cd03182 GST_C_GTT2_like GST_C 98.8 9E-09 2E-13 100.1 8.2 99 69-169 1-117 (117)
175 cd03181 GST_C_EFB1gamma GST_C 98.8 4.1E-09 9E-14 103.4 5.5 105 72-176 1-117 (123)
176 cd03075 GST_N_Mu GST_N family, 98.8 8.1E-09 1.8E-13 93.6 6.9 64 2-66 2-79 (82)
177 cd03046 GST_N_GTT1_like GST_N 98.8 1.3E-08 2.7E-13 90.9 7.8 64 1-66 1-72 (76)
178 KOG1195|consensus 98.8 6.8E-07 1.5E-11 102.1 22.9 348 256-725 92-527 (567)
179 cd03180 GST_C_2 GST_C family, 98.8 8.4E-09 1.8E-13 98.9 6.3 95 72-169 2-110 (110)
180 cd03191 GST_C_Zeta GST_C famil 98.8 1.3E-08 2.8E-13 99.7 7.7 100 71-173 2-117 (121)
181 PF13409 GST_N_2: Glutathione 98.8 1.2E-08 2.7E-13 89.5 6.6 59 8-66 1-68 (70)
182 cd03207 GST_C_8 GST_C family, 98.8 7.2E-09 1.6E-13 98.4 5.5 93 78-174 3-101 (103)
183 cd03080 GST_N_Metaxin_like GST 98.8 1.8E-08 3.9E-13 89.7 7.3 63 1-66 2-71 (75)
184 cd03203 GST_C_Lambda GST_C fam 98.8 3.5E-08 7.5E-13 96.6 9.8 104 69-175 1-111 (120)
185 cd03061 GST_N_CLIC GST_N famil 98.8 1.5E-08 3.3E-13 92.5 6.6 59 7-66 20-83 (91)
186 KOG4244|consensus 98.7 7.8E-08 1.7E-12 101.6 12.5 155 8-165 60-272 (281)
187 cd03183 GST_C_Theta GST_C fami 98.7 1.8E-08 3.9E-13 99.4 7.3 102 73-176 2-123 (126)
188 cd00570 GST_N_family Glutathio 98.7 4.1E-08 8.9E-13 85.2 8.1 65 1-66 1-71 (71)
189 cd03038 GST_N_etherase_LigE GS 98.7 7.7E-08 1.7E-12 87.7 8.4 66 1-66 1-80 (84)
190 cd03054 GST_N_Metaxin GST_N fa 98.7 6.7E-08 1.5E-12 85.3 7.5 63 1-66 1-70 (72)
191 cd03206 GST_C_7 GST_C family, 98.6 1.7E-08 3.7E-13 95.3 3.8 90 77-169 2-100 (100)
192 cd03184 GST_C_Omega GST_C fami 98.6 9.3E-08 2E-12 94.1 9.0 104 72-176 2-114 (124)
193 cd03043 GST_N_1 GST_N family, 98.6 7E-08 1.5E-12 85.4 7.2 61 5-66 6-73 (73)
194 cd03198 GST_C_CLIC GST_C famil 98.6 7E-08 1.5E-12 95.1 7.1 92 85-176 9-125 (134)
195 cd03209 GST_C_Mu GST_C family, 98.6 1.2E-07 2.6E-12 93.0 8.1 73 102-176 37-110 (121)
196 KOG2903|consensus 98.6 8.6E-08 1.9E-12 100.2 7.1 172 2-173 39-286 (319)
197 cd03195 GST_C_4 GST_C family, 98.6 2.9E-07 6.3E-12 89.2 10.3 98 71-174 2-112 (114)
198 PF00043 GST_C: Glutathione S- 98.6 1.1E-07 2.5E-12 88.6 6.6 65 102-167 30-95 (95)
199 PF14497 GST_C_3: Glutathione 98.5 9.5E-08 2.1E-12 90.1 5.1 92 69-165 2-99 (99)
200 cd03201 GST_C_DHAR GST_C famil 98.5 1.2E-07 2.5E-12 92.9 5.8 96 86-181 13-116 (121)
201 cd03179 GST_C_1 GST_C family, 98.5 8.6E-08 1.9E-12 91.1 4.8 90 72-164 2-105 (105)
202 cd03210 GST_C_Pi GST_C family, 98.5 2.8E-07 6.2E-12 91.0 7.4 71 103-175 38-112 (126)
203 cd03208 GST_C_Alpha GST_C fami 98.5 5.1E-07 1.1E-11 90.5 9.2 71 104-176 43-116 (137)
204 cd03204 GST_C_GDAP1 GST_C fami 98.5 2.1E-07 4.5E-12 88.9 6.0 69 101-169 30-111 (111)
205 PF13410 GST_C_2: Glutathione 98.4 2.7E-07 5.9E-12 80.6 5.4 61 102-162 8-69 (69)
206 cd03194 GST_C_3 GST_C family, 98.4 1.6E-06 3.4E-11 84.0 8.9 92 77-174 4-113 (114)
207 cd03079 GST_N_Metaxin2 GST_N f 98.3 1.4E-06 3.1E-11 76.5 7.3 58 7-66 15-72 (74)
208 KOG1148|consensus 98.3 4.7E-07 1E-11 104.4 4.1 96 283-399 248-343 (764)
209 cd01200 WHEPGMRS_RNA EPRS-like 98.3 8.1E-07 1.8E-11 69.3 3.9 41 1108-1149 2-42 (42)
210 cd01200 WHEPGMRS_RNA EPRS-like 98.2 5.5E-07 1.2E-11 70.2 2.4 41 1038-1078 2-42 (42)
211 cd00299 GST_C_family Glutathio 98.2 1.5E-06 3.2E-11 81.3 4.4 87 77-163 2-100 (100)
212 cd03193 GST_C_Metaxin GST_C fa 98.1 3.5E-06 7.5E-11 77.5 5.8 63 102-164 21-88 (88)
213 cd03202 GST_C_etherase_LigE GS 98.1 7.9E-06 1.7E-10 80.4 7.0 65 100-165 58-123 (124)
214 KOG3027|consensus 98.0 5.5E-05 1.2E-09 76.9 11.3 157 7-165 32-247 (257)
215 cd03197 GST_C_mPGES2 GST_C fam 97.9 2.6E-05 5.6E-10 77.7 7.8 63 102-165 81-145 (149)
216 cd03192 GST_C_Sigma_like GST_C 97.9 1.9E-05 4.1E-10 74.9 6.6 89 72-163 2-104 (104)
217 KOG3028|consensus 97.9 0.00022 4.9E-09 78.0 14.0 156 8-165 16-233 (313)
218 cd03205 GST_C_6 GST_C family, 97.8 1.7E-05 3.6E-10 74.5 4.4 59 102-163 39-98 (98)
219 cd03078 GST_N_Metaxin1_like GS 97.7 0.00011 2.4E-09 64.9 7.5 63 1-66 1-70 (73)
220 TIGR02190 GlrX-dom Glutaredoxi 97.5 0.0002 4.3E-09 64.4 6.4 65 1-66 10-79 (79)
221 cd07956 Anticodon_Ia_Arg Antic 97.5 0.0033 7.2E-08 64.5 15.3 110 616-727 3-118 (156)
222 cd03211 GST_C_Metaxin2 GST_C f 97.3 0.00014 3E-09 71.7 3.4 62 103-164 60-126 (126)
223 TIGR00233 trpS tryptophanyl-tR 97.3 0.0025 5.5E-08 73.2 13.6 74 284-370 4-77 (328)
224 COG0180 TrpS Tryptophanyl-tRNA 97.3 0.0016 3.5E-08 73.0 11.3 91 282-384 5-98 (314)
225 cd03212 GST_C_Metaxin1_3 GST_C 97.3 0.00033 7.2E-09 70.1 5.2 63 103-165 67-134 (137)
226 PRK12556 tryptophanyl-tRNA syn 97.2 0.0015 3.3E-08 74.9 10.9 79 291-381 11-92 (332)
227 cd00395 Tyr_Trp_RS_core cataly 97.2 0.0019 4.1E-08 72.4 10.6 69 553-627 156-225 (273)
228 cd03029 GRX_hybridPRX5 Glutare 97.2 0.0011 2.5E-08 58.2 6.9 65 1-66 3-72 (72)
229 PRK10638 glutaredoxin 3; Provi 97.1 0.0013 2.9E-08 59.6 6.6 65 1-66 4-74 (83)
230 PRK12284 tryptophanyl-tRNA syn 97.0 0.0039 8.4E-08 72.9 11.0 97 285-395 5-104 (431)
231 KOG1247|consensus 97.0 0.00044 9.6E-09 77.5 3.0 35 979-1013 532-566 (567)
232 cd00935 GlyRS_RNA GlyRS_RNA bi 96.9 0.0009 1.9E-08 54.6 3.4 45 1034-1078 2-46 (51)
233 cd00806 TrpRS_core catalytic c 96.8 0.0047 1E-07 69.6 9.6 67 291-369 7-73 (280)
234 PRK13354 tyrosyl-tRNA syntheta 96.8 0.0035 7.6E-08 74.1 9.0 68 553-627 189-257 (410)
235 PRK05912 tyrosyl-tRNA syntheta 96.7 0.0035 7.5E-08 74.3 8.0 68 553-627 191-259 (408)
236 cd00935 GlyRS_RNA GlyRS_RNA bi 96.6 0.0036 7.9E-08 51.0 4.8 43 1105-1148 3-45 (51)
237 PRK08560 tyrosyl-tRNA syntheta 96.5 0.026 5.7E-07 65.1 13.2 74 283-370 31-104 (329)
238 cd03027 GRX_DEP Glutaredoxin ( 96.3 0.0094 2E-07 52.5 6.1 61 1-62 3-69 (73)
239 TIGR02200 GlrX_actino Glutared 96.2 0.0074 1.6E-07 53.4 5.3 59 1-59 2-67 (77)
240 PF14834 GST_C_4: Glutathione 96.2 0.031 6.8E-07 52.7 9.4 100 70-175 2-114 (117)
241 PF10568 Tom37: Outer mitochon 96.1 0.02 4.3E-07 50.3 6.9 58 8-65 13-71 (72)
242 TIGR02194 GlrX_NrdH Glutaredox 96.0 0.017 3.7E-07 50.8 6.4 55 1-55 1-60 (72)
243 cd02066 GRX_family Glutaredoxi 96.0 0.017 3.7E-07 49.9 6.3 63 1-64 2-70 (72)
244 cd03418 GRX_GRXb_1_3_like Glut 95.8 0.022 4.9E-07 50.2 6.2 63 1-64 2-71 (75)
245 TIGR02196 GlrX_YruB Glutaredox 95.7 0.022 4.7E-07 49.7 5.9 64 1-65 2-73 (74)
246 cd02976 NrdH NrdH-redoxin (Nrd 95.6 0.033 7.1E-07 48.4 6.5 56 1-57 2-63 (73)
247 PRK10329 glutaredoxin-like pro 95.5 0.026 5.6E-07 50.9 5.5 54 1-55 3-61 (81)
248 TIGR02181 GRX_bact Glutaredoxi 95.3 0.048 1E-06 48.7 6.8 64 1-65 1-70 (79)
249 KOG1936|consensus 94.7 0.046 9.9E-07 62.4 5.6 58 1105-1167 8-68 (518)
250 COG0695 GrxC Glutaredoxin and 94.4 0.12 2.5E-06 46.6 6.7 57 1-58 3-67 (80)
251 COG0162 TyrS Tyrosyl-tRNA synt 94.4 0.09 1.9E-06 61.5 7.3 52 553-608 183-235 (401)
252 PF00462 Glutaredoxin: Glutare 93.8 0.059 1.3E-06 45.4 3.4 54 1-55 1-60 (60)
253 TIGR02189 GlrX-like_plant Glut 93.7 0.2 4.4E-06 47.1 7.0 64 1-65 10-82 (99)
254 cd03419 GRX_GRXh_1_2_like Glut 93.5 0.23 5E-06 44.4 6.9 65 1-66 2-75 (82)
255 PRK11200 grxA glutaredoxin 1; 93.5 0.23 5E-06 45.1 6.9 65 1-66 3-80 (85)
256 TIGR02183 GRXA Glutaredoxin, G 92.7 0.29 6.2E-06 44.7 6.2 65 1-66 2-79 (86)
257 TIGR02180 GRX_euk Glutaredoxin 91.9 0.63 1.4E-05 41.7 7.5 65 1-66 1-76 (84)
258 PHA03050 glutaredoxin; Provisi 91.9 0.5 1.1E-05 45.2 7.0 62 1-63 15-88 (108)
259 PF05746 DALR_1: DALR anticodo 91.8 2.4 5.1E-05 41.0 11.9 71 658-728 5-81 (119)
260 PF09635 MetRS-N: MetRS-N bind 91.1 1.5 3.2E-05 42.1 9.1 108 12-138 12-122 (122)
261 PF04399 Glutaredoxin2_C: Glut 90.2 0.51 1.1E-05 46.6 5.4 60 103-167 62-122 (132)
262 PRK12285 tryptophanyl-tRNA syn 89.5 0.94 2E-05 53.0 7.7 91 280-384 64-157 (368)
263 cd00805 TyrRS_core catalytic c 89.0 0.42 9.1E-06 53.7 4.4 67 553-627 154-221 (269)
264 TIGR00365 monothiol glutaredox 88.9 1.1 2.4E-05 41.9 6.4 58 7-65 25-88 (97)
265 cd03199 GST_C_GRX2 GST_C famil 88.2 0.84 1.8E-05 44.7 5.2 60 102-166 62-122 (128)
266 cd03028 GRX_PICOT_like Glutare 88.1 1.4 3E-05 40.6 6.4 57 7-64 21-83 (90)
267 PLN02734 glycyl-tRNA synthetas 87.8 0.46 9.9E-06 59.1 3.9 45 1033-1077 9-53 (684)
268 PLN02486 aminoacyl-tRNA ligase 87.3 2 4.3E-05 50.5 8.5 78 280-370 71-149 (383)
269 PF00579 tRNA-synt_1b: tRNA sy 87.0 0.48 1E-05 54.0 3.2 55 553-611 152-213 (292)
270 PRK14714 DNA polymerase II lar 86.8 1.2 2.7E-05 57.9 6.9 96 379-480 640-738 (1337)
271 PF01927 Mut7-C: Mut7-C RNAse 85.3 1.5 3.2E-05 44.5 5.4 31 311-343 12-42 (147)
272 PLN02734 glycyl-tRNA synthetas 82.7 1.5 3.2E-05 54.8 4.9 46 1103-1149 9-54 (684)
273 cd03031 GRX_GRX_like Glutaredo 80.8 4 8.6E-05 41.3 6.4 64 1-65 2-81 (147)
274 PTZ00126 tyrosyl-tRNA syntheta 80.8 1.5 3.3E-05 51.5 3.9 70 291-370 74-143 (383)
275 PRK04023 DNA polymerase II lar 79.9 2 4.4E-05 54.7 4.8 78 393-482 617-694 (1121)
276 PRK12282 tryptophanyl-tRNA syn 79.0 1.7 3.7E-05 50.2 3.6 67 291-370 10-76 (333)
277 PRK12285 tryptophanyl-tRNA syn 78.7 1.4 3E-05 51.7 2.7 56 553-610 206-265 (368)
278 cd03036 ArsC_like Arsenate Red 78.1 2.7 5.9E-05 40.3 4.1 32 1-32 1-32 (111)
279 cd02977 ArsC_family Arsenate R 77.8 3.2 6.9E-05 39.3 4.5 32 1-32 1-32 (105)
280 COG1656 Uncharacterized conser 77.7 4.5 9.8E-05 41.0 5.6 97 311-423 18-120 (165)
281 smart00836 DALR_1 DALR anticod 77.4 24 0.00051 34.2 10.7 50 679-728 35-84 (122)
282 PRK10824 glutaredoxin-4; Provi 76.3 7.2 0.00016 37.7 6.4 59 7-66 28-92 (115)
283 cd00805 TyrRS_core catalytic c 75.8 1.7 3.6E-05 48.9 2.2 71 291-367 8-81 (269)
284 KOG1936|consensus 75.2 4.8 0.0001 46.6 5.6 42 1033-1074 6-47 (518)
285 PRK00927 tryptophanyl-tRNA syn 75.1 2.2 4.8E-05 49.4 3.0 66 291-370 9-74 (333)
286 PLN02886 aminoacyl-tRNA ligase 74.6 5.7 0.00012 46.7 6.2 84 291-389 54-140 (389)
287 PRK12759 bifunctional gluaredo 73.1 5.7 0.00012 47.5 5.9 62 1-63 4-79 (410)
288 cd00677 S15_NS1_EPRS_RNA-bind 72.0 4.3 9.4E-05 32.2 3.1 38 1108-1146 2-46 (46)
289 cd03032 ArsC_Spx Arsenate Redu 69.5 5.6 0.00012 38.4 4.0 32 1-32 2-33 (115)
290 TIGR01617 arsC_related transcr 69.3 6.4 0.00014 38.1 4.3 32 1-32 1-32 (117)
291 COG4545 Glutaredoxin-related p 68.8 13 0.00027 32.5 5.3 56 2-57 5-78 (85)
292 PRK01655 spxA transcriptional 68.5 6.1 0.00013 39.2 4.1 32 1-32 2-33 (131)
293 cd03035 ArsC_Yffb Arsenate Red 68.1 7.2 0.00016 37.0 4.3 32 1-32 1-32 (105)
294 cd00677 S15_NS1_EPRS_RNA-bind 67.3 1.7 3.6E-05 34.6 -0.2 38 1038-1075 2-46 (46)
295 TIGR00234 tyrS tyrosyl-tRNA sy 66.1 6.9 0.00015 46.2 4.5 32 291-327 38-70 (377)
296 cd03033 ArsC_15kD Arsenate Red 66.0 7.1 0.00015 37.6 3.8 32 1-32 2-33 (113)
297 PRK00927 tryptophanyl-tRNA syn 64.9 8.6 0.00019 44.6 5.0 57 553-610 141-209 (333)
298 cd02973 TRX_GRX_like Thioredox 63.2 8.3 0.00018 32.8 3.4 55 1-56 3-64 (67)
299 PRK12282 tryptophanyl-tRNA syn 63.0 15 0.00033 42.6 6.5 57 553-610 145-209 (333)
300 KOG1752|consensus 62.8 30 0.00065 32.8 7.3 64 2-66 17-89 (104)
301 PTZ00126 tyrosyl-tRNA syntheta 62.3 9.1 0.0002 45.1 4.6 55 553-610 213-271 (383)
302 PRK12559 transcriptional regul 61.8 10 0.00022 37.7 4.1 32 1-32 2-33 (131)
303 PF00579 tRNA-synt_1b: tRNA sy 60.5 6.2 0.00013 44.9 2.8 78 281-370 4-83 (292)
304 PRK12283 tryptophanyl-tRNA syn 60.1 4.1 8.9E-05 47.8 1.2 78 291-382 10-91 (398)
305 PRK13344 spxA transcriptional 59.8 11 0.00024 37.5 4.0 32 1-32 2-33 (132)
306 KOG1668|consensus 58.6 6.5 0.00014 42.2 2.2 56 106-168 10-66 (231)
307 TIGR01616 nitro_assoc nitrogen 58.6 12 0.00025 36.9 3.9 32 1-32 3-34 (126)
308 PRK12283 tryptophanyl-tRNA syn 58.1 18 0.00039 42.6 5.9 42 580-627 245-288 (398)
309 TIGR00234 tyrS tyrosyl-tRNA sy 57.8 9.8 0.00021 44.9 3.9 54 553-610 180-234 (377)
310 PLN02486 aminoacyl-tRNA ligase 57.7 6.6 0.00014 46.2 2.4 53 554-610 223-279 (383)
311 cd03034 ArsC_ArsC Arsenate Red 57.5 14 0.00031 35.5 4.3 31 1-31 1-31 (112)
312 PRK10026 arsenate reductase; P 57.2 13 0.00028 37.4 4.0 32 1-32 4-35 (141)
313 TIGR00412 redox_disulf_2 small 56.9 20 0.00043 31.7 4.8 51 5-56 6-61 (76)
314 PRK14559 putative protein seri 56.5 6.9 0.00015 49.2 2.4 10 1133-1142 609-618 (645)
315 PF09190 DALR_2: DALR domain; 56.4 25 0.00054 29.9 5.1 26 696-721 2-28 (63)
316 TIGR00014 arsC arsenate reduct 55.6 16 0.00034 35.3 4.3 31 1-31 1-31 (114)
317 PRK10853 putative reductase; P 55.3 14 0.00029 36.0 3.7 31 1-31 2-32 (118)
318 COG0751 GlyS Glycyl-tRNA synth 55.1 1.2E+02 0.0025 38.3 12.3 113 615-727 541-657 (691)
319 COG1393 ArsC Arsenate reductas 53.4 17 0.00038 35.2 4.1 31 1-31 3-33 (117)
320 PRK01233 glyS glycyl-tRNA synt 53.3 1.3E+02 0.0027 38.5 12.6 75 653-727 570-648 (682)
321 PTZ00348 tyrosyl-tRNA syntheta 52.1 13 0.00027 47.1 3.7 55 553-610 178-236 (682)
322 PTZ00062 glutaredoxin; Provisi 51.9 34 0.00073 36.7 6.3 58 7-65 126-189 (204)
323 PF11287 DUF3088: Protein of u 49.7 34 0.00073 32.7 5.1 58 9-66 24-104 (112)
324 PF05768 DUF836: Glutaredoxin- 48.7 60 0.0013 29.0 6.6 51 1-51 2-57 (81)
325 PRK14559 putative protein seri 47.6 13 0.00028 46.8 2.8 12 1060-1071 607-618 (645)
326 PF12773 DZR: Double zinc ribb 47.2 17 0.00037 29.2 2.5 27 432-458 12-38 (50)
327 PRK00464 nrdR transcriptional 46.3 22 0.00047 36.3 3.6 44 433-484 29-76 (154)
328 COG0278 Glutaredoxin-related p 46.1 48 0.001 31.0 5.4 59 6-66 27-93 (105)
329 cd03030 GRX_SH3BGR Glutaredoxi 46.1 64 0.0014 29.9 6.4 62 1-63 2-79 (92)
330 COG1198 PriA Primosomal protei 45.6 17 0.00037 46.2 3.4 50 398-458 430-484 (730)
331 TIGR00211 glyS glycyl-tRNA syn 44.7 1.9E+02 0.0041 37.0 12.3 76 652-727 579-658 (691)
332 PF13240 zinc_ribbon_2: zinc-r 44.4 14 0.00031 24.8 1.3 19 422-440 2-21 (23)
333 PRK06266 transcription initiat 43.7 50 0.0011 34.6 6.0 18 380-397 50-67 (178)
334 PF03833 PolC_DP2: DNA polymer 38.9 10 0.00022 47.9 0.0 35 421-460 669-703 (900)
335 cd01659 TRX_superfamily Thiore 38.5 56 0.0012 25.8 4.6 51 1-51 1-61 (69)
336 smart00840 DALR_2 This DALR do 38.5 32 0.00068 28.2 2.9 29 696-724 2-31 (56)
337 PF07754 DUF1610: Domain of un 37.7 21 0.00045 24.3 1.3 21 406-426 1-23 (24)
338 PLN02886 aminoacyl-tRNA ligase 37.1 36 0.00077 40.2 4.1 17 594-610 247-267 (389)
339 TIGR00595 priA primosomal prot 36.2 48 0.001 40.9 5.2 51 398-459 208-263 (505)
340 PTZ00348 tyrosyl-tRNA syntheta 36.0 1.1E+02 0.0023 39.0 8.2 75 284-370 34-109 (682)
341 PRK14908 glycyl-tRNA synthetas 35.2 3E+02 0.0065 36.6 12.1 109 614-727 856-968 (1000)
342 PF10571 UPF0547: Uncharacteri 34.3 23 0.0005 24.6 1.2 20 406-427 3-22 (26)
343 PRK05580 primosome assembly pr 34.1 1.8E+02 0.0039 37.4 10.0 51 398-459 376-431 (679)
344 PF11801 Tom37_C: Tom37 C-term 34.1 41 0.00089 34.9 3.6 36 105-140 113-153 (168)
345 PRK14714 DNA polymerase II lar 33.9 26 0.00057 46.4 2.5 35 421-460 669-703 (1337)
346 COG5270 PUA domain (predicted 33.2 29 0.00063 35.8 2.2 24 391-414 2-25 (202)
347 PF14803 Nudix_N_2: Nudix N-te 33.1 18 0.00039 26.8 0.5 16 405-420 2-17 (34)
348 PF13248 zf-ribbon_3: zinc-rib 33.1 26 0.00057 24.1 1.3 7 422-428 5-11 (26)
349 COG3171 Uncharacterized protei 31.6 1.7E+02 0.0036 28.0 6.5 44 357-400 22-68 (119)
350 COG1933 Archaeal DNA polymeras 31.1 12 0.00026 40.2 -1.0 84 381-465 116-199 (253)
351 TIGR00411 redox_disulf_1 small 31.0 1.2E+02 0.0026 26.5 5.7 52 1-53 3-62 (82)
352 PRK14873 primosome assembly pr 29.5 35 0.00075 43.5 2.5 49 398-458 378-431 (665)
353 COG1645 Uncharacterized Zn-fin 28.1 29 0.00063 34.1 1.1 21 405-427 30-52 (131)
354 PRK05978 hypothetical protein; 28.1 35 0.00077 34.4 1.8 32 419-461 33-64 (148)
355 PF08271 TF_Zn_Ribbon: TFIIB z 28.0 42 0.00092 26.1 1.9 21 422-442 3-29 (43)
356 PRK12268 methionyl-tRNA synthe 27.8 39 0.00084 42.3 2.6 32 980-1011 524-555 (556)
357 PRK00398 rpoP DNA-directed RNA 26.1 46 0.001 26.3 1.8 14 449-462 21-34 (46)
358 COG1198 PriA Primosomal protei 25.7 41 0.00089 42.9 2.2 40 402-441 443-484 (730)
359 TIGR03037 anthran_nbaC 3-hydro 24.9 44 0.00096 34.2 1.8 20 399-418 110-129 (159)
360 COG1592 Rubrerythrin [Energy p 23.8 98 0.0021 32.0 4.1 24 403-427 134-157 (166)
361 PF14369 zf-RING_3: zinc-finge 23.1 52 0.0011 24.6 1.4 12 403-414 2-13 (35)
362 COG4352 RPL13 Ribosomal protei 23.0 1E+02 0.0022 29.0 3.6 39 359-397 74-112 (113)
363 TIGR00595 priA primosomal prot 22.4 53 0.0011 40.5 2.2 39 402-440 221-261 (505)
364 smart00661 RPOL9 RNA polymeras 22.3 52 0.0011 26.5 1.5 12 405-416 2-13 (52)
365 PRK03824 hypA hydrogenase nick 22.1 1E+02 0.0022 30.7 3.8 34 378-412 39-79 (135)
366 cd07963 Anticodon_Ia_Cys Antic 21.6 1.3E+02 0.0028 30.6 4.6 35 690-724 32-67 (156)
367 PF09862 DUF2089: Protein of u 21.4 1.1E+02 0.0023 29.5 3.6 34 450-483 13-47 (113)
368 COG5349 Uncharacterized protei 21.3 43 0.00092 32.3 0.8 9 419-427 21-29 (126)
369 KOG2145|consensus 21.0 1.1E+02 0.0023 34.2 3.8 46 279-330 82-128 (397)
370 cd01675 RNR_III Class III ribo 21.0 92 0.002 38.9 3.9 14 104-117 133-146 (555)
371 PRK05580 primosome assembly pr 20.9 58 0.0012 41.8 2.2 39 403-441 390-430 (679)
372 PRK13264 3-hydroxyanthranilate 20.9 58 0.0013 33.9 1.8 20 399-418 116-135 (177)
373 PRK12380 hydrogenase nickel in 20.5 90 0.0019 30.1 2.9 12 375-386 39-50 (113)
374 TIGR00100 hypA hydrogenase nic 20.1 97 0.0021 30.0 3.1 12 375-386 39-50 (115)
No 1
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-117 Score=1043.83 Aligned_cols=531 Identities=39% Similarity=0.679 Sum_probs=498.6
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
.++|+||+|+|||||.|||||++ .+|++|+++||+||+|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~-~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLY-TYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHH-HHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999 67789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+|++|+|+||.|.||+++.|.++||++|.+|+++|+||.+.++++||+.|++||+|+||+|+||.|++++++||+||+||
T Consensus 83 ~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg 162 (558)
T COG0143 83 LFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCG 162 (558)
T ss_pred HHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCCCcEeeec-cCCCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITR-DLKWG 517 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~~~l~dw~ISR-~~~WG 517 (1175)
+.++|.++++|+|++||+++++|.++||||+|+++++.|++|+++++. .||++.++++.+|+++||+|||||| +++||
T Consensus 163 ~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 163 RTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred CcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 999999999999999999999999999999999999999999999864 3899999999999999999999999 99999
Q ss_pred cccCCCCCCCce--EEecCc-----------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCC
Q psy7266 518 IPVPLPGFENKY--SLSSSP-----------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 578 (1175)
Q Consensus 518 ~piP~~~~e~~v--vWfds~-----------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~ 578 (1175)
+||| +.+++| |||||+ .|.+||+++ +++++|||||||++||+++|||||++++
T Consensus 243 ipvP--~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~----~~e~vhfIGKDii~FHav~wPamL~~~~-- 314 (558)
T COG0143 243 IPVP--GDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD----DTELVHFIGKDIIRFHAVYWPAMLMAAG-- 314 (558)
T ss_pred ccCC--CCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC----CceEEEEeccccCcchhhHHHHHHHhCC--
Confidence 9999 557888 999998 468899985 7889999999999999999999999997
Q ss_pred cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHH
Q psy7266 579 YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFI 658 (1175)
Q Consensus 579 ~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~ 658 (1175)
.++|+.|++||||+++|+|||||+||+|+|.++++. ||+|+|||||++..|+++|.+|+|++|.+++|++|+|++||++
T Consensus 315 ~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~ 393 (558)
T COG0143 315 LPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLA 393 (558)
T ss_pred CCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC--CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCCh
Q psy7266 659 NRALSFIEKNYGSTIPEIS--PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSP 736 (1175)
Q Consensus 659 ~r~~~~~~~~~~~~~p~~~--~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~ 736 (1175)
+|+++|+.+++++.+|... ..+.|..++..+..+...+.++|+.++|++|++.|++|++.+|.|++..+||.+.|+
T Consensus 394 ~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~-- 471 (558)
T COG0143 394 NRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKE-- 471 (558)
T ss_pred HHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhcc--
Confidence 9999999999999998753 126889999999999999999999999999999999999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhhH
Q psy7266 737 EQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVD 816 (1175)
Q Consensus 737 ~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ie 816 (1175)
..++++.+++++++++++.+++||+||||.+|++||++||.+.... ..........+.+||.++++++||+||+.++++
T Consensus 472 ~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~lF~ri~~~~~~ 550 (558)
T COG0143 472 DKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDAR-NFTWLGARQPLLPGHKLGPPEPLFPRIEEEAIE 550 (558)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccc-cchhhhhccccCCCcccCCcccCccccCHHHHH
Confidence 3467899999999999999999999999999999999999875332 111222333567899999999999999999999
Q ss_pred HHHHHhc
Q psy7266 817 EWKLKYG 823 (1175)
Q Consensus 817 ~~~~~~~ 823 (1175)
++.+...
T Consensus 551 ~~~~~~~ 557 (558)
T COG0143 551 ELIEALK 557 (558)
T ss_pred HHHHhhc
Confidence 9886653
No 2
>KOG1247|consensus
Probab=100.00 E-value=3.7e-118 Score=958.32 Aligned_cols=546 Identities=55% Similarity=1.020 Sum_probs=526.7
Q ss_pred CCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHH
Q psy7266 272 APVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICD 351 (1175)
Q Consensus 272 ~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~ 351 (1175)
.+.+|.+++++++||++.||+|..+|+|++.++++++||+|||++.+|++.+|+||||++|+++|.+|.++|++|+++|+
T Consensus 5 ~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcd 84 (567)
T KOG1247|consen 5 DPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCD 84 (567)
T ss_pred CCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCC
Q psy7266 352 KYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDAR 431 (1175)
Q Consensus 352 ~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~ 431 (1175)
+|+..|...++|++|+||.|+||+++.+.+++|++|.+|+++|+..+.+..+.||..|+++|+|++|+|+||.|+|+++|
T Consensus 85 Kyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~AR 164 (567)
T KOG1247|consen 85 KYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDAR 164 (567)
T ss_pred hcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCCCcEe
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPRC 509 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~wl~~~l~dw~ 509 (1175)
|++|++||+++++.++..|+|..|...++++.+.|.||.|+++++++.+|+++.. ..|.+++++++++||++||+++|
T Consensus 165 GDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRC 244 (567)
T KOG1247|consen 165 GDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRC 244 (567)
T ss_pred chhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccc
Confidence 9999999999999999999999999999999999999999999999999999865 46999999999999999999999
Q ss_pred eeccCCCCcccCCCCCCCce--EEecCc------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHh
Q psy7266 510 ITRDLKWGIPVPLPGFENKY--SLSSSP------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAA 575 (1175)
Q Consensus 510 ISR~~~WG~piP~~~~e~~v--vWfds~------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~ 575 (1175)
|||++.||+|||..+++++| |||||+ +|++||.++ ++|++++|||||+++||+++||++++++
T Consensus 245 iTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknp---E~v~LyqFmgKDNVpFHtviFP~s~lgt 321 (567)
T KOG1247|consen 245 ITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNP---ENVELYQFMGKDNVPFHTVIFPCSQLGT 321 (567)
T ss_pred cccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCH---hhhhHHHHhccCCCcceeeecchhhhcC
Confidence 99999999999999999999 999998 899999998 8999999999999999999999999999
Q ss_pred CCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHH
Q psy7266 576 GDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655 (1175)
Q Consensus 576 ~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~ 655 (1175)
+.++++.+++.+++||+++++|||||||.+|+++++.+.|+++++|||||++.+|+++|+.|+|++|..++|++|+||+|
T Consensus 322 ~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLG 401 (567)
T KOG1247|consen 322 EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLG 401 (567)
T ss_pred CCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCC
Q psy7266 656 NFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGS 735 (1175)
Q Consensus 656 n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~ 735 (1175)
||+||+++|+...+++.+|...+...|..+++.++.++.++..+||..++++|++.+|++++.+|+|||.++.|.+..
T Consensus 402 NFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~-- 479 (567)
T KOG1247|consen 402 NFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYE-- 479 (567)
T ss_pred HHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhh--
Confidence 999999999999999999998887789999999999999999999999999999999999999999999999776654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhh
Q psy7266 736 PEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQV 815 (1175)
Q Consensus 736 ~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~i 815 (1175)
.+++++++++.+.++++..++.||+||||.++.+|+.|||++.. ...+.++..|++||+||+|.|||++||.++|
T Consensus 480 -~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~----~~~~~~~~~l~~gH~ig~~~pLFq~l~~~qi 554 (567)
T KOG1247|consen 480 -ESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPET----LFPDRFICRLLAGHRIGTPSPLFQKLDEDQI 554 (567)
T ss_pred -hcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCccc----cCCCccceeecCcCccCCccHHHHhcCHHHH
Confidence 46778999999999999999999999999999999999999854 3356677889999999999999999999999
Q ss_pred HHHHHHhcCccC
Q psy7266 816 DEWKLKYGGQQN 827 (1175)
Q Consensus 816 e~~~~~~~g~~~ 827 (1175)
++||++|+|+|.
T Consensus 555 ee~r~k~gg~q~ 566 (567)
T KOG1247|consen 555 EEWRAKFGGQQS 566 (567)
T ss_pred HHHHHhhcCCCC
Confidence 999999999884
No 3
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.5e-114 Score=1073.32 Aligned_cols=548 Identities=53% Similarity=0.976 Sum_probs=505.6
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
.++|.+++++|+||+|+|||||.|||||+++++|++|+++||+||+|++|+|++|||+||+||+.+|++.|++|+++|++
T Consensus 9 ~~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~ 88 (801)
T PLN02610 9 PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDK 88 (801)
T ss_pred CcCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHH
Confidence 46788889999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCC--ccccCC
Q psy7266 353 YFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPK--CRYEDA 430 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~--c~~~d~ 430 (1175)
|++.|+++|++|||++|.|+||+++.|.+.||++|.+|+++|+||++.+.++||+.|++||+|++|+|+||. |+++++
T Consensus 89 ~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a 168 (801)
T PLN02610 89 YHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSA 168 (801)
T ss_pred HHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCCCcE
Q psy7266 431 RGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPR 508 (1175)
Q Consensus 431 ~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~wl~~~l~dw 508 (1175)
+|++||.||+.+++.+|++|+|.+||++++.+.++||||+|++|+++|.+|+++.. ..|+++.+.++.+||+++|+||
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~ 248 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPR 248 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998753 2488888888899999999999
Q ss_pred eeeccCCCCcccCCCCCCCce--EEecCc------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHH
Q psy7266 509 CITRDLKWGIPVPLPGFENKY--SLSSSP------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574 (1175)
Q Consensus 509 ~ISR~~~WG~piP~~~~e~~v--vWfds~------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~ 574 (1175)
||||++.||||||.++.+++| |||||+ .|..||+.+ .+++++|||||||++||+++|||||++
T Consensus 249 ~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~---~~~~~~hfiGKDi~~fH~i~wPa~L~a 325 (801)
T PLN02610 249 CITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNP---ENVELYQFMGKDNVPFHTVMFPSTLLG 325 (801)
T ss_pred ceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCc---ccceEEEEEeeecchhHHHHHHHHHHh
Confidence 999999999999999888888 999998 467899875 468889999999999999999999999
Q ss_pred hCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHH
Q psy7266 575 AGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNL 654 (1175)
Q Consensus 575 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l 654 (1175)
++.++++|++|++||||+++|+|||||+||+|+|.++++.+||+|+|||||++.++.++|.+|+|++|.+++|++|+|++
T Consensus 326 ~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~l 405 (801)
T PLN02610 326 TGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNL 405 (801)
T ss_pred CCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 99878899999999999999999999999999999999855999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhcCCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 655 GNFINRALSFIE----KNYGSTIPEIS---PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 655 ~n~~~r~~~~~~----~~~~~~~p~~~---~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
||+++|++.|+. +++++.+|... ....|.||+++++.+++.+.++|++|+|+.|++.|++|++++|+||+..+
T Consensus 406 GNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~k 485 (801)
T PLN02610 406 GNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 485 (801)
T ss_pred HHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998 56888887532 34568999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCC-----CC--ccccCCCCCCcc
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSS-----SP--SLVQFLPTGHKI 800 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~-----~~--~~~~~l~~Gh~i 800 (1175)
||.+.+++ ..++.+++++++++++.+++||+||||++|++||++||++........ .. ..+..++.||.|
T Consensus 486 PW~L~k~d---~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 562 (801)
T PLN02610 486 FWKLYKED---KPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPESLSLSDEKGEVARAKRPWELVPAGHKI 562 (801)
T ss_pred chhhhCCC---HHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCcccccchhccccccccccccccCCCCCCC
Confidence 99998753 346788999999999999999999999999999999998643210000 00 011346789999
Q ss_pred CCCCCCccccchhhhHHHHHHhcCcc
Q psy7266 801 GTPAPLFRKIEQAQVDEWKLKYGGQQ 826 (1175)
Q Consensus 801 ~~p~~LF~ki~~~~ie~~~~~~~g~~ 826 (1175)
+++.+||+||+.++++.+.+++.+.+
T Consensus 563 ~~~~~lF~ri~~~~~~~~~~~~~~~~ 588 (801)
T PLN02610 563 GTPEPLFKELKDEEVEAYREKFAGSQ 588 (801)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhccch
Confidence 99999999999999999888887754
No 4
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-103 Score=979.55 Aligned_cols=524 Identities=31% Similarity=0.577 Sum_probs=483.6
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
++|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++|||+||+||+.+|++.|++|.++|++|++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~-aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQ-ADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHH-HHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999997555 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 361 YEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 361 ~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
|+.|||++|+|.+|++++|.+.|+++|.+|+++|+||++++.++||+.|++||+|++|+|+||.|++.|++|++|+.||.
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~ 160 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGA 160 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCC-Ccc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW-GIP 519 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~W-G~p 519 (1175)
.+++.++++|+|.+||++++++.++||||+|+++++.|.+++++.. .||+++++.+.+||+++|.||||||+++| |||
T Consensus 161 ~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gip 239 (673)
T PRK00133 161 TYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFE 239 (673)
T ss_pred cCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceE
Confidence 9999999999999999999999999999999999999999997644 49999999999999989999999999999 999
Q ss_pred cCCCCCCCce--EEecCc--------c---------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc
Q psy7266 520 VPLPGFENKY--SLSSSP--------S---------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT 580 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~--------~---------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~ 580 (1175)
||. .+++| ||||++ + |..||+.+ .+++++||+|+||++||+++|||++++.+ ++
T Consensus 240 vP~--~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~---~~~~~v~~iGkDi~~fH~i~wpa~l~a~g--~~ 312 (673)
T PRK00133 240 IPG--APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKD---SDTELYHFIGKDIIYFHTLFWPAMLEGAG--YR 312 (673)
T ss_pred CCC--CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCC---CCceEEEEEeecchhHHHHHHHHHHHhCC--CC
Confidence 994 46676 999997 1 45689543 45778999999999999999999999975 78
Q ss_pred cCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCC-CCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 581 KVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPEN-QDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 581 ~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~-~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
+|++|++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.+ +|.+|+|+.+..+.|++|+++++|+++
T Consensus 313 lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~ 391 (673)
T PRK00133 313 LPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFAS 391 (673)
T ss_pred CCCEEeeeccEEecCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999997 99999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQK 739 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~ 739 (1175)
|+.+++.+++++.+| ..+.|+|+++.++.++..+.++|++|+|+.|++.+++|++++|+|++..+||.+.++ +.
T Consensus 392 R~~~~~~k~~~~~~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~---~~ 465 (673)
T PRK00133 392 RTAGFINKRFDGKLP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQ---DG 465 (673)
T ss_pred HHHHHHHHhcCCCCC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcC---CH
Confidence 999999888876655 245699999999999999999999999999999999999999999999999987764 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhhHHHH
Q psy7266 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVDEWK 819 (1175)
Q Consensus 740 ~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ie~~~ 819 (1175)
+++.+++++++++++.+++||+|||||+|++||++||.+...+ ..+ ..+..||.|+++++||+||+.++++++.
T Consensus 466 ~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~~~~-----~~~-~~~~~g~~~~~~~~lf~~~~~~~~~~~~ 539 (673)
T PRK00133 466 ERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTW-----DDA-QQPLAGHPINKFKILFTRIEDKQIEALI 539 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCccCh-----hhh-cCCCCCCCcCCCCcCCcCCCHHHHHHHH
Confidence 4677899999999999999999999999999999999863222 111 1244799999999999999999999998
Q ss_pred HHhcCcc
Q psy7266 820 LKYGGQQ 826 (1175)
Q Consensus 820 ~~~~g~~ 826 (1175)
+++++.+
T Consensus 540 ~~~~~~~ 546 (673)
T PRK00133 540 EASKEAA 546 (673)
T ss_pred HHhhcch
Confidence 8887755
No 5
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-101 Score=944.62 Aligned_cols=534 Identities=41% Similarity=0.756 Sum_probs=486.3
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
.++|+||+|||||||.|||||+++.++.+|+++||+||+|++|+|++|+|+||++|+.+|++.|++|.++|++|.+.|.+
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999983459999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++++|||++|++.+|++++|.+.++++|.+|+++|+||++.++++||+.|+++|+|++|.|+||.|+..+.+|++||.||
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg 161 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCG 161 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcc
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIP 519 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~p 519 (1175)
..+++.++++|+|++||++++++.++||||+++++++.+.+++++. ..||+..++++.+||+++++|||||||++||+|
T Consensus 162 ~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~-~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGip 240 (556)
T PRK12268 162 ALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS-GDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIP 240 (556)
T ss_pred ccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHhCCCCCcCceeeCCCCee
Confidence 9999999999999999999999999999999999999999999854 368999999999999669999999999999999
Q ss_pred cCCCCCCCce--EEecCc--------c----------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc
Q psy7266 520 VPLPGFENKY--SLSSSP--------S----------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY 579 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~--------~----------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~ 579 (1175)
||+.+.++.+ ||||++ . |..|| .+ .+++.+||+|+||++||+++||+++++.+.++
T Consensus 241 iP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w-~d---s~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~ 316 (556)
T PRK12268 241 VPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFW-LD---PETKSYYFIGKDNIPFHSIIWPAMLLGSGEPL 316 (556)
T ss_pred CCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHh-CC---CCCeEEEEEeeccCcchHHHHHHHHHhcCCCC
Confidence 9955445556 999976 1 23477 22 34566999999999999999999999988667
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
.+|+.+++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+....|+++++.++|+++
T Consensus 317 ~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~-yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~ 395 (556)
T PRK12268 317 KLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVN 395 (556)
T ss_pred CCCCEeeccCCEEECCeeeccCCCcccCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHH
Confidence 88999999999999999999999999999999996 99999999999998999999999999988889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQK 739 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~ 739 (1175)
|+.+++.++.++.+|...++..|+|++++++.+++.+.++|++|+|+.|++.+++|++.+|+|++..+||.+.++ +.
T Consensus 396 r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~---~~ 472 (556)
T PRK12268 396 RVLSFIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKT---DR 472 (556)
T ss_pred HHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcC---CH
Confidence 999999887766555444577899999999999999999999999999999999999999999999999987653 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhhHHHH
Q psy7266 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVDEWK 819 (1175)
Q Consensus 740 ~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ie~~~ 819 (1175)
.++..+++++.++++.+++||+|||||+||+||++||.+... ...++.+. .++.||.|+.+.+||+||+++++|+++
T Consensus 473 ~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~--~~~w~~~~-~~~~g~~i~~~~~lf~r~~~~~~~~~~ 549 (556)
T PRK12268 473 ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIE--KLTWESLK-PLLPGHPINKPEPLFKKIDDEQIEEEL 549 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCc--ccchhhhc-CCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 456788889999999999999999999999999999973111 11222221 367899999999999999999999999
Q ss_pred HHhcCc
Q psy7266 820 LKYGGQ 825 (1175)
Q Consensus 820 ~~~~g~ 825 (1175)
++++|.
T Consensus 550 ~~~~~~ 555 (556)
T PRK12268 550 ERLGGA 555 (556)
T ss_pred HHhcCC
Confidence 999885
No 6
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.3e-98 Score=918.36 Aligned_cols=509 Identities=39% Similarity=0.711 Sum_probs=470.4
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++|+|+||++|+.+|+++|++|.++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~-aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTIL-ADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHH-HHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999997665 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 363 WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 363 ~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
+|||++|++.+|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|+|++|+|+||.|++++++|++|+.||...
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~ 159 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHL 159 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCCCcEeeeccCC-CCcc
Q psy7266 443 NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPRCITRDLK-WGIP 519 (1175)
Q Consensus 443 ~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~wl~~~l~dw~ISR~~~-WG~p 519 (1175)
++.++++|+|+|||++++++.++||||+|+++++.|++++++++ ..||+..++++.+||.++++||||||+++ ||+|
T Consensus 160 ~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 160 EPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred CHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 99999999999999999999999999999999999999998653 24777888999999987899999999999 9999
Q ss_pred cCCCCCCCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 520 VPLPGFENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
||.| +++| ||||++ .|.+|||.+ .+++++||+|+||++||+++||+|+++++ +++|
T Consensus 240 vP~~--~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~---~~~~~v~~~G~Di~~~h~~~~~a~l~~~~--~~~~ 312 (530)
T TIGR00398 240 VPND--PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNND---EDAELIHFIGKDIVRFHTIYWPAMLMGLG--LPLP 312 (530)
T ss_pred CCCC--CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCC---CCceEEEEEecccchhHHHHHHHHHHhCC--CCCC
Confidence 9988 4566 999987 245789986 67888999999999999999999999986 6789
Q ss_pred eEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 583 ~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
+.+++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.+.|++|+++.+....|+++++.++|+++|+.
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLAR-FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHHH-cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 99999999999988889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Q psy7266 663 SFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSR 741 (1175)
Q Consensus 663 ~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~ 741 (1175)
+++.+++++.+|.. .....|+|++++++.+.+.+.++|++|+|+.|++.+++|++.+|+|++.++||.+.+++ . +
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~---~-~ 467 (530)
T TIGR00398 392 GFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS---P-R 467 (530)
T ss_pred HHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh---H-H
Confidence 99888776666643 24578999999999999999999999999999999999999999999999999887642 2 4
Q ss_pred HHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccc
Q psy7266 742 ASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIE 811 (1175)
Q Consensus 742 ~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~ 811 (1175)
+.++++++.++++++++||+|||||+||+||++|+.+.... ....++.||.|+++.|||+|||
T Consensus 468 ~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~-------~~~~~~~~~~i~~~~~lf~ki~ 530 (530)
T TIGR00398 468 LKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWD-------FKLKLLEGHKLNKAEPLFSKIE 530 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhh-------hhcCCCCCCCCCCCCCCCCCCC
Confidence 66788899999999999999999999999999999864321 1112557999999999999986
No 7
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=2.1e-96 Score=888.26 Aligned_cols=503 Identities=26% Similarity=0.433 Sum_probs=445.5
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
.+++|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++||||||++|+..|++.|++|.++|++|+..|+
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~-aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~ 145 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIA-ADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYR 145 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHH-HHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4678999999999999999999998665 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCccccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGC 438 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~ 438 (1175)
+++++|||++|.|++|++|.|.+.||++|.+|+++|+||+++++++||++|++|+.+.++..
T Consensus 146 ~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~------------------ 207 (616)
T PLN02224 146 TLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE------------------ 207 (616)
T ss_pred HHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC------------------
Confidence 99999999999999999999999999999999999999999999999999999988776531
Q ss_pred CCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccC-CC
Q psy7266 439 GQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDL-KW 516 (1175)
Q Consensus 439 g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~-~W 516 (1175)
.+.|..||++++.+.+++|||+|++|++.|.+|+++.+..+ |...++.+.+||+++|+||||||++ .|
T Consensus 208 ----------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~W 277 (616)
T PLN02224 208 ----------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDW 277 (616)
T ss_pred ----------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCC
Confidence 24588899999999999999999999999999998876544 5567788999999999999999985 89
Q ss_pred CcccCCCCCCCce--EEecCc--------c----------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhC
Q psy7266 517 GIPVPLPGFENKY--SLSSSP--------S----------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAG 576 (1175)
Q Consensus 517 G~piP~~~~e~~v--vWfds~--------~----------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~ 576 (1175)
|||||.+ +++| |||||+ . +..|||.+ +||+|+||++||+++|||+++++|
T Consensus 278 GIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~--------v~~iGKDii~fH~i~wpa~l~~~g 347 (616)
T PLN02224 278 GIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPAS--------LHLIGKDILRFHAVYWPAMLMSAG 347 (616)
T ss_pred ceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcc--------eEEEeecccccHHHHHHHHHHHCC
Confidence 9999966 5677 999998 1 13378876 999999999999999999999875
Q ss_pred CCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHH
Q psy7266 577 DQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGN 656 (1175)
Q Consensus 577 ~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n 656 (1175)
+++|+.+++||||+++|+|||||+||+|+|.++++. ||+|++||||++.++.++|.+|+++.|.+++|++|+|++||
T Consensus 348 --~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgN 424 (616)
T PLN02224 348 --LELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGN 424 (616)
T ss_pred --CCCCcEEEecccEecCCccccccCCccCCHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999996 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCC-CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCC
Q psy7266 657 FINRALSFIEKNYGSTIPEIS-PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGS 735 (1175)
Q Consensus 657 ~~~r~~~~~~~~~~~~~p~~~-~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~ 735 (1175)
+++|++.|+.+++++.+|... ....|.+++++++.+++.+.++|++++++.|++.+++|++.+|+|++..+||.+.+++
T Consensus 425 ll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~ 504 (616)
T PLN02224 425 LLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQG 504 (616)
T ss_pred HHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccc
Confidence 999999999998888776532 3456889999999999999999999999999999999999999999999999987754
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCC-ccccCCCCCCccCCCCCCccccchhh
Q psy7266 736 PEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSP-SLVQFLPTGHKIGTPAPLFRKIEQAQ 814 (1175)
Q Consensus 736 ~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~-~~~~~l~~Gh~i~~p~~LF~ki~~~~ 814 (1175)
..+..++.+++++++++++++++||+|||||+|++||++||.+........+. ..+..++.||.|+++.|||+||+.++
T Consensus 505 ~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~Lf~ri~~~~ 584 (616)
T PLN02224 505 GVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNP 584 (616)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhhhccccCCCCCCCCCCCCCCCCcCcch
Confidence 32344567788899999999999999999999999999999864321000010 11223678999999999999999543
Q ss_pred ---hHHHHHHhc
Q psy7266 815 ---VDEWKLKYG 823 (1175)
Q Consensus 815 ---ie~~~~~~~ 823 (1175)
+++++.+.+
T Consensus 585 ~~~~~~~~~~~~ 596 (616)
T PLN02224 585 EKEEDEKKPKVG 596 (616)
T ss_pred HHHHHHHhhhhc
Confidence 445554433
No 8
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-96 Score=909.59 Aligned_cols=500 Identities=28% Similarity=0.475 Sum_probs=448.8
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++|+||+|+|||||.|||||+++.+ .+|+++||+||+|++|+|++|+|+||++|+.+|++.|++|.++|++|.+.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~-~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTI-AADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHH-HHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999755 59999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+|++|||++|.|.+|+++.|.+.++++|.+|+++|+||++.+.++||+.|++||+|+++.
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-------------------- 141 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-------------------- 141 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999999853
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHH-HHhhcCCCcEeeeccC-CC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICK-AWLKDGLKPRCITRDL-KW 516 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~wl~~~l~dw~ISR~~-~W 516 (1175)
..|+|++||++++++.++||||+|++++++|.+|+++++.. ||+..++.+. +||+++|+||||||++ .|
T Consensus 142 --------~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~W 213 (648)
T PRK12267 142 --------DGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDW 213 (648)
T ss_pred --------cCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCc
Confidence 02679999999999999999999999999999999876543 5777888888 9998889999999995 79
Q ss_pred CcccCCCCCCCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc
Q psy7266 517 GIPVPLPGFENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY 579 (1175)
Q Consensus 517 G~piP~~~~e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~ 579 (1175)
|||||.+ +++| |||||+ +|++|||.+ +||+|+||++||+++||+++++++ +
T Consensus 214 GipvP~~--~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~--------~~~~GkDii~fH~i~wpa~l~~~~--~ 281 (648)
T PRK12267 214 GIPVPFD--PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPAD--------VHLVGKDILRFHAIYWPIMLMALG--L 281 (648)
T ss_pred ceECCCC--CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccc--------eEEEeeeecchhHHHHHHHHHhCC--C
Confidence 9999975 5777 999998 245789987 999999999999999999999986 7
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
++|++|++||||+.+|+|||||+||+|+|.++++. ||+|+|||||++.++.++|++|+++.|..++|++|+|++||+++
T Consensus 282 ~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~-ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~ 360 (648)
T PRK12267 282 PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDR-YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLN 360 (648)
T ss_pred CCCcEEEecceEEECCceecccCCcccCHHHHHHH-cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhh
Q psy7266 660 RALSFIEKNYGSTIPE-ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQ 738 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~ 738 (1175)
|+..++.+++++.+|. ..+...|+|++++++.+++.+.++|++|+|+.|++.+++|++.+|+|++..+||.+.+++ .+
T Consensus 361 R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~-~~ 439 (648)
T PRK12267 361 RTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDE-GK 439 (648)
T ss_pred HHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCc-cc
Confidence 9999999888887774 345678999999999999999999999999999999999999999999999999876642 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchh-hhHH
Q psy7266 739 KSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQA-QVDE 817 (1175)
Q Consensus 739 ~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~-~ie~ 817 (1175)
..++.+++++++++++.+++||+||||++|++||++||.+.... .+.....+..+++||.|+++.+||+||+.+ .++.
T Consensus 440 ~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~~-~~~~~~~~~~~~~g~~~~~~~~lf~k~~~~~~~~~ 518 (648)
T PRK12267 440 KERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEELT-SWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAY 518 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCcccc-chhhhhhhccccCCCccCCCCCCcCCCCcHHHHHH
Confidence 45678899999999999999999999999999999999853221 110000123467899999999999999974 5544
Q ss_pred HHHHhcC
Q psy7266 818 WKLKYGG 824 (1175)
Q Consensus 818 ~~~~~~g 824 (1175)
. +++.+
T Consensus 519 ~-~~~~~ 524 (648)
T PRK12267 519 I-KEQME 524 (648)
T ss_pred H-HHhhh
Confidence 3 34433
No 9
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-95 Score=874.07 Aligned_cols=505 Identities=21% Similarity=0.325 Sum_probs=426.8
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|||.++|.+ |+.|++.++|.+... .+.++|+|.+|||||||.||||||++.+| .|+++||+||+||+
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~-------~~~~~f~I~~PPPNVTG~LHmGHAl~~tl-~D~l~RykRM~G~~ 72 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPN-------EDKPPFSIDTPPPNVTGSLHMGHALNYTL-QDILARYKRMRGYN 72 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCC-------CCCCCcEEeCCCCCCCCcccchhhhhHHH-HHHHHHHHHcCCCe
Confidence 4578999999999 999999999987542 11156999999999999999999999999 99999999999999
Q ss_pred cccccccCCcchHHHHHHH----HcCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKAL----EEGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~----~~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
|+|++||||+|++||.+++ ++|+++.+ +.+++...|.++|++||+|+||.+ +|+||.+.++|
T Consensus 73 vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av 152 (877)
T COG0525 73 VLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAV 152 (877)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 9999999999999999876 33777654 445677899999999999999975 69999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----c--------------------c-----------------
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----G--------------------V----------------- 421 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----g--------------------~----------------- 421 (1175)
+++|.+||++|+||+++++|||||.|+|.|||.+|+ | |
T Consensus 153 ~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~D 232 (877)
T COG0525 153 QEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDD 232 (877)
T ss_pred HHHHHHHHHCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCC
Confidence 999999999999999999999999999999998774 0 0
Q ss_pred ------------CCCcc---------------------------c----------------cCCCCCcccccC-Ccc---
Q psy7266 422 ------------CPKCR---------------------------Y----------------EDARGDQCDGCG-QLI--- 442 (1175)
Q Consensus 422 ------------cP~c~---------------------------~----------------~d~~G~~c~~~g-~~~--- 442 (1175)
+|.|+ . .|.+|...++|+ .+-
T Consensus 233 eRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~ 312 (877)
T COG0525 233 ERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLD 312 (877)
T ss_pred hhhHhhcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCc
Confidence 02221 1 146777777775 431
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~w 500 (1175)
+++.|.+|+|+|||+++|++.++|||+++..+++.+++.++++... .|.++++.+.+|
T Consensus 313 r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W 392 (877)
T COG0525 313 RFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDW 392 (877)
T ss_pred HHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999954433 567899999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCC-----------------------------CCce--EEecCc--------------
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGF-----------------------------ENKY--SLSSSP-------------- 535 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~-----------------------------e~~v--vWfds~-------------- 535 (1175)
+ ++++|||||||+||||+||+|+| +.+| |||||+
T Consensus 393 ~-~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~ 471 (877)
T COG0525 393 M-ENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETP 471 (877)
T ss_pred H-hhCcCceeeeeeecCcccceEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcch
Confidence 9 69999999999999999999976 2367 999997
Q ss_pred cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-CcccCeEEEeecee-ecCCCcccccCCCccCchhhhh
Q psy7266 536 SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-QYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKD 613 (1175)
Q Consensus 536 ~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~ 613 (1175)
++++|+|.+ +.+.|.||++||..+. ++++..+ +..|++.|++||+| +.+|+|||||+||||+|.++|+
T Consensus 472 ~l~~fyPt~--------llvtG~DIIffWvarm--i~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~ 541 (877)
T COG0525 472 DLKKFYPTD--------LLVTGHDIIFFWVARM--IMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID 541 (877)
T ss_pred HHHhcCCCc--------cccccchhhHHHHHHH--HHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH
Confidence 356777887 7899999999998874 3333333 45788999999999 6899999999999999999999
Q ss_pred cCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCChhhHHHHHHH
Q psy7266 614 TGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE----ISPIHEDFLLLALI 689 (1175)
Q Consensus 614 ~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~----~~~~~~d~~l~~~l 689 (1175)
. ||+|||||+|++.+..|+|++|+++++... ++|+|++|| +.+|+..++++..+. ...+..|+||++++
T Consensus 542 ~-yGaDAlRf~la~~~~~G~Di~~~~~~~~~~--rnF~nKlWN----a~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l 614 (877)
T COG0525 542 K-YGADALRFTLASLASPGRDINFDEKRVEGY--RNFLNKLWN----ATRFVLMNLDDLGPDDLDLLALSLADRWILSRL 614 (877)
T ss_pred H-hChHHHHHHHHhccCCCcccCcCHHHHHHH--HHHHHHHHh----HHHHHHhcccccCcccccccccchHHHHHHHHH
Confidence 6 999999999999989999999999999853 445555555 788887765432221 12258899999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPST 767 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~ 767 (1175)
+++++.++++|++|+|..|.+.|++| ..+|++||+..|+..... . . ....+.+++..++..+++||||||||+
T Consensus 615 ~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~--~-~~~~a~~tL~~vl~~~lrLLhPfmPfi 689 (877)
T COG0525 615 NETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--E--E-EKRAARATLYYVLDTLLRLLHPFMPFI 689 (877)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--H--H-HHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99999999999999999999999999 599999999999965422 1 1 223567778999999999999999999
Q ss_pred HHHHHHHcCCC
Q psy7266 768 ASTIASQLGAS 778 (1175)
Q Consensus 768 se~i~~~L~~~ 778 (1175)
||+||+.|...
T Consensus 690 TEei~q~l~~~ 700 (877)
T COG0525 690 TEEIWQKLPGT 700 (877)
T ss_pred hHHHHHhcCCC
Confidence 99999999764
No 10
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.5e-92 Score=901.09 Aligned_cols=509 Identities=20% Similarity=0.272 Sum_probs=437.5
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|++.++|++ +++|++.++|+... ..++++|+|++||||+||.|||||+++.++ +|+++||+||+|++
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~-~D~~~Ry~rm~G~~ 72 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDG-------NSNKPPFCIDIPPPNVTGSLHIGHALNWSI-QDIIARYKRMKGYN 72 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCc-------ccCCCeEEEEeCCCCCCCCCcHHHhHHHHH-HHHHHHHHHhcCCc
Confidence 4578999999999 99999999997643 235678999999999999999999999888 99999999999999
Q ss_pred cccccccCCcchHHHHHHHH----cCCCch------------hhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKALE----EGLTPR------------QICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~----~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
|+|++||||||+|||.++++ .|.++. +++++|...+++++++||+++||.+ .|+|+.|.+.|
T Consensus 73 vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v 152 (861)
T TIGR00422 73 VLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAV 152 (861)
T ss_pred ccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHH
Confidence 99999999999999998763 366663 5678899999999999999999864 59999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec--------------------------------------------
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-------------------------------------------- 419 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-------------------------------------------- 419 (1175)
+++|.+|+++|+||++.++++|||.|+|+|||++|+
T Consensus 153 ~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~ 232 (861)
T TIGR00422 153 KEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPE 232 (861)
T ss_pred HHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCC
Confidence 999999999999999999999999999999997631
Q ss_pred ---------------------------------cc-----CCCcccc----------------CCCCCcccccCCcc---
Q psy7266 420 ---------------------------------GV-----CPKCRYE----------------DARGDQCDGCGQLI--- 442 (1175)
Q Consensus 420 ---------------------------------g~-----cP~c~~~----------------d~~G~~c~~~g~~~--- 442 (1175)
|| ||+|+.. |.+|.+|+.||.+.
T Consensus 233 ~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~ 312 (861)
T TIGR00422 233 DERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLT 312 (861)
T ss_pred chHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcC
Confidence 33 6777642 57899999998762
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~w 500 (1175)
.+++|.+|+|+|||++++++.++||||++++++++++++++++... +|+++++++.+|
T Consensus 313 ~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~w 392 (861)
T TIGR00422 313 RFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNW 392 (861)
T ss_pred HHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999854333 577889999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCCC-----------------------------Cce--EEecCc--------------
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGFE-----------------------------NKY--SLSSSP-------------- 535 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~e-----------------------------~~v--vWfds~-------------- 535 (1175)
| ++++|||||||++||||||+|+|+ .+| |||||+
T Consensus 393 l-~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~ 471 (861)
T TIGR00422 393 L-RNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETK 471 (861)
T ss_pred H-hccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChH
Confidence 9 589999999999999999998753 356 899997
Q ss_pred cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhc
Q psy7266 536 SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT 614 (1175)
Q Consensus 536 ~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~ 614 (1175)
+|++|||.| ++++|+||++||..+|+++.++.. +..|++++++||||+ .+|+|||||+||+|+|.++++.
T Consensus 472 ~~~~~~P~d--------~~~~G~Dii~fw~~~~~~~~~~~~-~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ 542 (861)
T TIGR00422 472 DLKKFYPTD--------LLVTGYDIIFFWVARMIFRSLALT-GQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEK 542 (861)
T ss_pred HHhhcCCcc--------eeecchhhhhHHHHHHHHHHHHhc-CCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHH
Confidence 256789998 899999999999999988766653 345569999999998 4999999999999999999996
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCChhhHHHHHHHHHH
Q psy7266 615 GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE--ISPIHEDFLLLALINRE 692 (1175)
Q Consensus 615 ~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~--~~~~~~d~~l~~~l~~~ 692 (1175)
||+|++||||++..+.++|++|+++.+... .+|+|++|| +.|...+....+++ ++. ......|+||+++++.+
T Consensus 543 -ygaDalR~~l~~~~~~~~d~~f~~~~~~~~--~~~~nkl~N-~~rf~~~~~~~~~~-~~~~~~~~~~~D~wil~~l~~~ 617 (861)
T TIGR00422 543 -YGADALRFTLASLVTPGDDINFDWKRVESA--RNFLNKLWN-ASRFVLMNLSDDLE-LSGGEEKLSLADRWILSKLNRT 617 (861)
T ss_pred -hChHHHHHHHHhCCCCCCCceecHHHHHHH--HHHHHHHHH-HHHHHHhccccccc-cccccccCCHHHHHHHHHHHHH
Confidence 999999999999888899999999998864 448999999 44433332222211 221 23567899999999999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH
Q psy7266 693 LSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAST 770 (1175)
Q Consensus 693 ~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~ 770 (1175)
++.+.++|++|+|+.|++.|++|+ ++||+|++.++||.+..+ ..+...++.++.++++.+++||+|||||+||+
T Consensus 618 ~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~----~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEe 693 (861)
T TIGR00422 618 IKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN----EAEKKAARDTLYYVLDKALRLLHPFMPFITEE 693 (861)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCC----cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999999999999995 899999999999986432 12345677888999999999999999999999
Q ss_pred HHHHcCCC
Q psy7266 771 IASQLGAS 778 (1175)
Q Consensus 771 i~~~L~~~ 778 (1175)
||++|+..
T Consensus 694 lw~~L~~~ 701 (861)
T TIGR00422 694 IWQHFKEG 701 (861)
T ss_pred HHHhCccc
Confidence 99999853
No 11
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-89 Score=879.64 Aligned_cols=510 Identities=20% Similarity=0.268 Sum_probs=425.6
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHc
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLV 318 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~ 318 (1175)
...+++.|++.++|.+ +++|++.++|+... ...++++|+|+.||||+||.|||||+++.++ +|+++||+||+
T Consensus 12 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~------~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~-~Di~~Ry~rm~ 84 (1052)
T PRK14900 12 RTELAKGYEHREVEARWYPFWQERGYFHGDE------HDRTRPPFSIVLPPPNVTGSLHLGHALTATL-QDVLIRWKRMS 84 (1052)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCccCCc------ccCCCCCEEEecCCCCCCCcchHHHHHhhHH-HHHHHHHHHhc
Confidence 3557789999999999 99999999997632 1235678999999999999999999999998 99999999999
Q ss_pred CCCcccccccCCcchHHHHHHHH-----cCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHH
Q psy7266 319 NRNTLYVSGTDEYGTATETKALE-----EGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQ 379 (1175)
Q Consensus 319 G~~v~~~~G~D~~G~~ie~~a~~-----~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~ 379 (1175)
||+|+|++||||||+|||.++++ .|.++.+ +.+++.+.|++++++||+++||.+ .|+||.|
T Consensus 85 G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~ 164 (1052)
T PRK14900 85 GFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGL 164 (1052)
T ss_pred CCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHH
Confidence 99999999999999999997763 2444443 567788999999999999999975 5999999
Q ss_pred HHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc---------------------------------------
Q psy7266 380 TEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG--------------------------------------- 420 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g--------------------------------------- 420 (1175)
.+.++++|.+|+++|+||++.++++|||.|+|+|+|.+|+.
T Consensus 165 ~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~ava 244 (1052)
T PRK14900 165 SRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVA 244 (1052)
T ss_pred HHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEE
Confidence 99999999999999999999999999999999999987741
Q ss_pred ---------------------------------------c-----CCCcccc----------------CCCCCcccccCC
Q psy7266 421 ---------------------------------------V-----CPKCRYE----------------DARGDQCDGCGQ 440 (1175)
Q Consensus 421 ---------------------------------------~-----cP~c~~~----------------d~~G~~c~~~g~ 440 (1175)
| ||+|+.. +.+|.+.+.+|.
T Consensus 245 V~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~ 324 (1052)
T PRK14900 245 VHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGP 324 (1052)
T ss_pred ECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcc
Confidence 0 1222211 234544444443
Q ss_pred cc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHH
Q psy7266 441 LI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARV 495 (1175)
Q Consensus 441 ~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~ 495 (1175)
+. ..++|.+|+||||+++++++.++||||+++.|++++++++++.... ||...++
T Consensus 325 ~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~ 404 (1052)
T PRK14900 325 LAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTN 404 (1052)
T ss_pred cCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHH
Confidence 21 1356889999999999999999999999999999999999864433 6778899
Q ss_pred HHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------------------Cce--EEecCc-------------
Q psy7266 496 ICKAWLKDGLKPRCITRDLKWGIPVPLPGFE-------------------------NKY--SLSSSP------------- 535 (1175)
Q Consensus 496 ~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e-------------------------~~v--vWfds~------------- 535 (1175)
++.+|| ++|+||||||||+||||||+|+|+ .+| |||||+
T Consensus 405 ~~~~wl-~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~ 483 (1052)
T PRK14900 405 TYMAWM-RNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQT 483 (1052)
T ss_pred HHHHHH-hcCccceEEeecCCCceeCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHHcCCCch
Confidence 999999 589999999999999999998643 367 999998
Q ss_pred -cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC---CcccCeEEEeeceeec-CCCcccccCCCccCchh
Q psy7266 536 -SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD---QYTKVNHIMATEYLNY-EDGKFSKSRGTGVFGNN 610 (1175)
Q Consensus 536 -~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~---~~~~p~~i~~~g~l~~-~G~KMSKS~GN~v~~~d 610 (1175)
+|.+|||.| ++++|+||++|| +++++..+. +..||++|++||||+. +|+|||||+||+|+|.+
T Consensus 484 ~~~~~~~P~d--------~~~~G~Dii~~W----~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~d 551 (1052)
T PRK14900 484 DTLRTFYPTS--------VMETGHDIIFFW----VARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLV 551 (1052)
T ss_pred HHHHhhCCch--------hhcccccHHhHH----HHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHH
Confidence 356789998 899999999874 454444332 3445699999999975 99999999999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc--CCCCCC-CCCChhhHHHHH
Q psy7266 611 AKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNY--GSTIPE-ISPIHEDFLLLA 687 (1175)
Q Consensus 611 ~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~--~~~~p~-~~~~~~d~~l~~ 687 (1175)
+++. ||+|+|||||++..+.++|++|+++.+... ++|+|++|| ++|++.+....+ ++..+. ..+...|+||++
T Consensus 552 vIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~nkl~N-~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils 627 (1052)
T PRK14900 552 ITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY--RAFANKLWN-ASRFALMNLSGYQERGEDPARLARTPADRWILA 627 (1052)
T ss_pred HHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHHHHHHH-HHHHHHHhhhccCcccccccccccCHHHHHHHH
Confidence 9996 999999999999999999999999998543 469999999 677765544333 222222 234678999999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhh
Q psy7266 688 LINRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMP 765 (1175)
Q Consensus 688 ~l~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP 765 (1175)
+++.++..+.++|++|+|+.|++.||+|+ ++||+||+..+||. .+++ ..+...++.++.++++.+++||+||||
T Consensus 628 ~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l-~~~~---~~~~~~~~~~L~~~L~~l~~LLaPfmP 703 (1052)
T PRK14900 628 RLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEAL-ASED---PEARRSVQAVLVHCLQTSYRLLHPFMP 703 (1052)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhh-ccCC---HHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 99999999999999999999999999995 79999999999974 3332 223345677889999999999999999
Q ss_pred HHHHHHHHHcCC
Q psy7266 766 STASTIASQLGA 777 (1175)
Q Consensus 766 ~~se~i~~~L~~ 777 (1175)
|+||+||++|+.
T Consensus 704 ~~aEeiw~~L~~ 715 (1052)
T PRK14900 704 FITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHhcc
Confidence 999999999975
No 12
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-89 Score=872.80 Aligned_cols=503 Identities=20% Similarity=0.255 Sum_probs=423.2
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.++|++ +++|++.++|+... . .+++|+|++||||+||.|||||+++.++ +|+++||+||+||
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~-------~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~-~D~~~Ry~rm~G~ 74 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDD-------N-SKKPFSIVIPPPNVTGSLHMGHALNNTL-QDILIRYKRMQGY 74 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCc-------C-CCCCEEEecCCCCCCCcchHHHHHHHHH-HHHHHHHHHhCCC
Confidence 46789999999999 99999999998643 1 3456999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHH----HcCCCchhh------------HHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKAL----EEGLTPRQI------------CDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~----~~g~~p~~~------------~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++||||||+|||.+++ ..|+++.++ +++|...+++++++||+++||.+ +|+|+.|.+.
T Consensus 75 ~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~ 154 (874)
T PRK05729 75 NTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKA 154 (874)
T ss_pred cccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHH
Confidence 99999999999999988765 347777654 78899999999999999999874 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----c-------------------------------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----G------------------------------------- 420 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----g------------------------------------- 420 (1175)
|+++|.+|+++|+||++.++++|||.|+|+|||.+|+ |
T Consensus 155 v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~ 234 (874)
T PRK05729 155 VREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPE 234 (874)
T ss_pred HHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCC
Confidence 9999999999999999999999999999999998885 1
Q ss_pred ------------cCCCccc-------------------------------------------cCCCCCcccccCCcc---
Q psy7266 421 ------------VCPKCRY-------------------------------------------EDARGDQCDGCGQLI--- 442 (1175)
Q Consensus 421 ------------~cP~c~~-------------------------------------------~d~~G~~c~~~g~~~--- 442 (1175)
.||.|+. -|.+|.+++.||.+.
T Consensus 235 d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~ 314 (874)
T PRK05729 235 DERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLD 314 (874)
T ss_pred ccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCC
Confidence 1344332 145788888887642
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~w 500 (1175)
.+++|.+|+|+|||++++++.++||||+++++++++++++++... .+|+..++++.+|
T Consensus 315 ~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~w 394 (874)
T PRK05729 315 RFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHW 394 (874)
T ss_pred HHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHH
Confidence 235688999999999999999999999999999999999976543 3688899999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCCC----------------------Cce--EEecCc--------------cccccCC
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGFE----------------------NKY--SLSSSP--------------SLVQFLP 542 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~e----------------------~~v--vWfds~--------------~~~~~wp 542 (1175)
| ++++|||||||++||||||+|+++ .+| |||||+ +|.+|||
T Consensus 395 l-~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P 473 (874)
T PRK05729 395 M-ENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYP 473 (874)
T ss_pred H-hcCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCC
Confidence 9 589999999999999999987642 346 899986 2456899
Q ss_pred CCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC---CcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCc
Q psy7266 543 TATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD---QYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPA 618 (1175)
Q Consensus 543 ~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~---~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~ga 618 (1175)
.| ++++|+||++||..+ ++..+. +..|+++|++||+|. .+|+|||||+||||+|.|+++. ||+
T Consensus 474 ~d--------~~~~G~Dii~~W~a~----~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-yGa 540 (874)
T PRK05729 474 TS--------VLVTGFDIIFFWVAR----MIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-YGA 540 (874)
T ss_pred cc--------cccccccccchHHHH----HHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHH-hCh
Confidence 98 899999999985544 333222 234559999999997 7999999999999999999996 999
Q ss_pred hhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHhcCCCCCC-CCCChhhHHHHHHHHHHHHHH
Q psy7266 619 DIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFI-EKNYGSTIPE-ISPIHEDFLLLALINRELSAY 696 (1175)
Q Consensus 619 DalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~-~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~ 696 (1175)
|++||||++.++.++|++|+++.+... .+++|++||. .|...+. ...+.+.++. ..+...|+|++++++.+++.+
T Consensus 541 DalR~~ll~~~~~~~Di~fs~~~l~~~--~~~~nkl~N~-~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v 617 (874)
T PRK05729 541 DALRFTLAALASPGRDIRFDEERVEGY--RNFANKLWNA-SRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEV 617 (874)
T ss_pred HHHHHHHHhCCCCCCCceeCHHHHHHH--HHHHHHHHHH-HHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999888999999999998754 3477888873 3322221 1111122221 235678999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q psy7266 697 YSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQ 774 (1175)
Q Consensus 697 ~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~ 774 (1175)
.++|++|+|+.|++.|++|+ ++||+||+.++||.. + .+ ...+++++..+++.+++||+|||||+||+||++
T Consensus 618 ~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~--~--~~---~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~ 690 (874)
T PRK05729 618 TEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ--E--AA---KRATRATLAYVLEQILRLLHPFMPFITEELWQK 690 (874)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hH---HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHh
Confidence 99999999999999999996 899999999999953 2 11 346777889999999999999999999999999
Q ss_pred cCC
Q psy7266 775 LGA 777 (1175)
Q Consensus 775 L~~ 777 (1175)
|+.
T Consensus 691 l~~ 693 (874)
T PRK05729 691 LAP 693 (874)
T ss_pred ccc
Confidence 974
No 13
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-87 Score=855.14 Aligned_cols=507 Identities=21% Similarity=0.254 Sum_probs=421.4
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.+ |++ +++|++.++|+... ..++++|+|++|||||||.|||||+++.++ +|+++||+||+||
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~-------~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~-~D~~~Ry~rm~G~ 126 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNF-------DRGGDPFVIPMPPPNVTGSLHMGHAMFVTL-EDIMVRYNRMKGR 126 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCc-------ccCCCCEEEecCCCCCCCchhHHHHHHHHH-HHHHHHHHHhcCC
Confidence 5788999999 999 99999999997643 235677999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH----cCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE----EGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~----~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++||||||+|||.++++ .|+++.+ +.+++...+++++++||+++||.+ .|+||.|.+.
T Consensus 127 ~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~ 206 (958)
T PLN02943 127 PTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRA 206 (958)
T ss_pred eeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHH
Confidence 999999999999999987653 4776653 346678899999999999999964 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc------------------------------------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG------------------------------------------ 420 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g------------------------------------------ 420 (1175)
|+++|.+|+++|+||++.++|+|||.|+|+|||.+|+.
T Consensus 207 v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP 286 (958)
T PLN02943 207 VVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNP 286 (958)
T ss_pred HHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECC
Confidence 99999999999999999999999999999999976640
Q ss_pred ------------------------------------c-----CCCccc----------------cCCCCCcccccCCcc-
Q psy7266 421 ------------------------------------V-----CPKCRY----------------EDARGDQCDGCGQLI- 442 (1175)
Q Consensus 421 ------------------------------------~-----cP~c~~----------------~d~~G~~c~~~g~~~- 442 (1175)
| ||+|+. .|.+|.+.+.+|.++
T Consensus 287 ~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ 366 (958)
T PLN02943 287 EDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWF 366 (958)
T ss_pred CCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHH
Confidence 0 122221 145666666666542
Q ss_pred -------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHHhh
Q psy7266 443 -------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAWLK 502 (1175)
Q Consensus 443 -------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~ 502 (1175)
++++|.+|+|+||+++++++.++||||++++++++++++++.... .+|..+++++.+||
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl- 445 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWL- 445 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHH-
Confidence 346788999999999999999999999999999999999976433 36778899999999
Q ss_pred cCCCcEeeeccCCCCcccCCCCC----------------------------------CCce--EEecCc-----------
Q psy7266 503 DGLKPRCITRDLKWGIPVPLPGF----------------------------------ENKY--SLSSSP----------- 535 (1175)
Q Consensus 503 ~~l~dw~ISR~~~WG~piP~~~~----------------------------------e~~v--vWfds~----------- 535 (1175)
++++|||||||++||||||+|++ +++| |||||+
T Consensus 446 ~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~ 525 (958)
T PLN02943 446 SNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPD 525 (958)
T ss_pred hcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCc
Confidence 59999999999999999999874 2467 999998
Q ss_pred ----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC---CcccCeEEEeeceee-cCCCcccccCCCccC
Q psy7266 536 ----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD---QYTKVNHIMATEYLN-YEDGKFSKSRGTGVF 607 (1175)
Q Consensus 536 ----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~---~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~ 607 (1175)
+|++|||.| ++++|+||++| |++.++..+. +..|++++++||+++ .+|+|||||+||+|+
T Consensus 526 ~~~~~~~~~yP~d--------l~~~G~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~ 593 (958)
T PLN02943 526 VSAEDFKKFYPTT--------VLETGHDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVID 593 (958)
T ss_pred cChHHHhccCCCe--------EEEEeehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCC
Confidence 245689988 89999999987 5554433333 233569999999995 799999999999999
Q ss_pred chhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------------hcCCCCC
Q psy7266 608 GNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEK-------------NYGSTIP 674 (1175)
Q Consensus 608 ~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~-------------~~~~~~p 674 (1175)
|.++++. ||+|++||||++. +.++|++|+++.|.. |++++++++|....+...+.. .+++..+
T Consensus 594 p~~~i~~-ygaDalR~~l~~~-~~~~d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~ 669 (958)
T PLN02943 594 PLDTIKE-FGTDALRFTLALG-TAGQDLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEES 669 (958)
T ss_pred HHHHHHh-cCChHHHHHHHhC-CCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCcccc
Confidence 9999996 9999999999985 458999999999975 688999999965544332211 1111111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHH
Q psy7266 675 EISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQV 752 (1175)
Q Consensus 675 ~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~ 752 (1175)
...++..|+||+++++.+++++.++|++|+|+.|++.|++| .++||+|++.+|||.+..++. .....+..++..+
T Consensus 670 ~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~---~~~~~a~~vL~~v 746 (958)
T PLN02943 670 LLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN---SALSRAQAVLLYV 746 (958)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch---HHHHHHHHHHHHH
Confidence 11346789999999999999999999999999999999999 599999999999986533321 1234567788899
Q ss_pred HHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 753 SYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 753 l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
++.+++||+|||||+||+||++|+.
T Consensus 747 l~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 747 FENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHHHHHhCcchhHHHHHHHHcCC
Confidence 9999999999999999999999974
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-86 Score=844.20 Aligned_cols=507 Identities=20% Similarity=0.298 Sum_probs=425.2
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.++|++ +++|.+.+.|+... ..++++|+|++|||||||.|||||+++.++ +|+++||+||+||
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~-~D~~~R~~r~~G~ 76 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDP-------DERKPVYSIDTPPPTVSGSLHIGHVFSYTH-TDFIARYQRMRGY 76 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCccccc-------ccCCCcEEEecCcCCCCCCccHHHHHhHHH-HHHHHHHHHcCCC
Confidence 35678999999999 99999999997643 225678999999999999999999999887 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH-cCCCch------------hhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE-EGLTPR------------QICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQH 385 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~-~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~ 385 (1175)
+|+|++||||||+|||.++++ .|+++. ++++++.+.|++++++||+++|| +++|+||.|.+.|++
T Consensus 77 ~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 77 NVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred cccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 999999999999999999987 599887 48899999999999999999997 458999999999999
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceec------------------------ccCC----Cccc----------
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE------------------------GVCP----KCRY---------- 427 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~------------------------g~cP----~c~~---------- 427 (1175)
+|.+|+++|+||++.++|+|||.|+|+|+|++|+ +||| +|.+
T Consensus 157 ~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~ 236 (800)
T PRK13208 157 SFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERY 236 (800)
T ss_pred HHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHH
Confidence 9999999999999999999999999999999763 2343 1211
Q ss_pred ----------------------------------------------------------cCCCCCcccccCCc--------
Q psy7266 428 ----------------------------------------------------------EDARGDQCDGCGQL-------- 441 (1175)
Q Consensus 428 ----------------------------------------------------------~d~~G~~c~~~g~~-------- 441 (1175)
-+..|.+.++||.+
T Consensus 237 ~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a 316 (800)
T PRK13208 237 KHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEA 316 (800)
T ss_pred HHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHH
Confidence 01223333345432
Q ss_pred --------------c--ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q psy7266 442 --------------I--NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGL 505 (1175)
Q Consensus 442 --------------~--~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l 505 (1175)
. ....|.+|+|+|||++++++.++||||+++++++++++++++.. .+|++.++++.+||+ ++
T Consensus 317 ~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~-~~P~~~~~~~~~~l~-~~ 394 (800)
T PRK13208 317 RKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEIN-WYPEHMRVRLENWIE-GL 394 (800)
T ss_pred HHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcE-EECHHHHHHHHHHHH-hc
Confidence 1 23456789999999999999999999999999999999998763 467788999999994 77
Q ss_pred C-cEeeeccCCCCcccCCCCCC--------------------------------------Cce--EEecCc---------
Q psy7266 506 K-PRCITRDLKWGIPVPLPGFE--------------------------------------NKY--SLSSSP--------- 535 (1175)
Q Consensus 506 ~-dw~ISR~~~WG~piP~~~~e--------------------------------------~~v--vWfds~--------- 535 (1175)
+ |||||||++||+|||+|+|+ .+| |||||+
T Consensus 395 ~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~ 474 (800)
T PRK13208 395 NWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGW 474 (800)
T ss_pred CCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCC
Confidence 7 99999999999999985532 256 999997
Q ss_pred -----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCch
Q psy7266 536 -----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGN 609 (1175)
Q Consensus 536 -----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~ 609 (1175)
.|++|||.| ++++|+||++||..++..+-.+.. +..+++.+++||+|+ .+|+|||||+||+|+|.
T Consensus 475 ~~~~~~~~~~~P~d--------~~~~G~Di~~~w~~~~l~~~~~~~-~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~ 545 (800)
T PRK13208 475 ERDEDLFEKVFPMD--------LRPQGHDIIRTWLFYTILRAYLLT-GKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPE 545 (800)
T ss_pred CCChhhhhhcCCce--------EEEeecchhhhHHHHHHHHHHHhc-CCCCcceEEEeeEEECCCCCCCCCCCCCCCCHH
Confidence 256789998 899999999999887654433332 345669999999996 69999999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHH
Q psy7266 610 NAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALI 689 (1175)
Q Consensus 610 d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l 689 (1175)
++++. ||+|++||||+ .++.++|++|+++.+. .+++++++++|+++.+..+ .. .....+...+...|+|+++++
T Consensus 546 ~~i~~-yg~D~lR~~l~-~~~~~~d~~fs~~~~~--~~~~~l~kl~N~~r~~~~~-~~-~~~~~~~~~~~~~D~~il~~l 619 (800)
T PRK13208 546 ELLEK-YGADAVRYWAA-SARLGSDTPFDEKQVK--IGRRLLTKLWNASRFVLHF-SA-DPEPDKAEVLEPLDRWILAKL 619 (800)
T ss_pred HHHHH-cCccHHHHHHh-cCCCCCCceecHHHHH--HHHHHHHHHHHHHHHHHhc-cc-ccccCccccCCHHHHHHHHHH
Confidence 99996 99999999999 7888999999999986 4788999999986554422 11 001111223567899999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPST 767 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~ 767 (1175)
+.+++.+.++|++|+|+.|++.|++|+ ++||+|++.++||.+..+. ..+...++.++.++++.+++||+|||||+
T Consensus 620 ~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~---~~~~~~~~~~l~~~l~~l~~LLaPf~P~i 696 (800)
T PRK13208 620 AKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDE---EEEQKSARYTLYTVLDTLLRLLAPFLPFI 696 (800)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCC---cHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 999999999999999999999999996 4899999999998754321 11245677888999999999999999999
Q ss_pred HHHHHHHcC
Q psy7266 768 ASTIASQLG 776 (1175)
Q Consensus 768 se~i~~~L~ 776 (1175)
||+||++|+
T Consensus 697 aEelw~~L~ 705 (800)
T PRK13208 697 TEEVWSWLY 705 (800)
T ss_pred HHHHHHhCC
Confidence 999999998
No 15
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1e-86 Score=851.09 Aligned_cols=511 Identities=18% Similarity=0.236 Sum_probs=417.5
Q ss_pred cccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcC
Q psy7266 241 SSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319 (1175)
Q Consensus 241 ~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G 319 (1175)
..+++.|++.++|.+ +++|++.++|.... ..++++|+|++||||+||.|||||+++.++ .|+++||+||+|
T Consensus 94 ~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti-~Dii~Ry~rm~G 165 (1066)
T PLN02381 94 SQMAKQYSPSAVEKSWYAWWEKSGYFGADA-------KSSKPPFVIVLPPPNVTGALHIGHALTAAI-EDTIIRWKRMSG 165 (1066)
T ss_pred hhcccCCCHHHHHHHHHHHHHHCCCccCCc-------cCCCCcEEEEeCCCCCCCCccHHHHHHHHH-HHHHHHHHHhCC
Confidence 457789999999999 99999999997643 235788999999999999999999999998 999999999999
Q ss_pred CCcccccccCCcchHHHHHHHH-----cCCCch------------hhHHHHHHHHHHHHhhccccccccC--CCCCHHHH
Q psy7266 320 RNTLYVSGTDEYGTATETKALE-----EGLTPR------------QICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQT 380 (1175)
Q Consensus 320 ~~v~~~~G~D~~G~~ie~~a~~-----~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~ 380 (1175)
|+|+|++||||||+|||.++++ .|+++. +++++|...+++++++||+++||.+ .|+|+.|.
T Consensus 166 ~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~ 245 (1066)
T PLN02381 166 YNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRS 245 (1066)
T ss_pred CcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHH
Confidence 9999999999999999999864 366554 5567788999999999999999865 69999999
Q ss_pred HHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec---------------------cc------------------
Q psy7266 381 EIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE---------------------GV------------------ 421 (1175)
Q Consensus 381 ~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~---------------------g~------------------ 421 (1175)
+.|+++|.+|+++|+||++.++|+|||.|+|+|||.+|+ |.
T Consensus 246 ~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vA 325 (1066)
T PLN02381 246 KAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVA 325 (1066)
T ss_pred HHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEe
Confidence 999999999999999999999999999999999998542 10
Q ss_pred -----------------------------------------------------------CCCccc---------------
Q psy7266 422 -----------------------------------------------------------CPKCRY--------------- 427 (1175)
Q Consensus 422 -----------------------------------------------------------cP~c~~--------------- 427 (1175)
||+|+.
T Consensus 326 TtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~ 405 (1066)
T PLN02381 326 TTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFIN 405 (1066)
T ss_pred cCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeee
Confidence 011111
Q ss_pred -cCCCCCcccccC-Cc----------------------c--ccccccCCcccCCCCccEEeecccccccchhHHHHHHHH
Q psy7266 428 -EDARGDQCDGCG-QL----------------------I--NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSW 481 (1175)
Q Consensus 428 -~d~~G~~c~~~g-~~----------------------~--~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~ 481 (1175)
-+.+|.+.+.|| .+ + ..++|.+|+||||+++++++.++|||++++.+++++++.
T Consensus 406 ~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~a 485 (1066)
T PLN02381 406 IFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDA 485 (1066)
T ss_pred eeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHH
Confidence 134555555544 21 1 245788999999999999999999999999999999998
Q ss_pred H---HhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC--------------------------------
Q psy7266 482 V---SETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF-------------------------------- 525 (1175)
Q Consensus 482 ~---~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~-------------------------------- 525 (1175)
+ ......| |...++++.+|| ++++||||||||+||||||+|+|
T Consensus 486 v~~~~~~~i~~~P~~~~~~~~~wl-~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 564 (1066)
T PLN02381 486 AIDGENKKLEFIPKQYLAEWKRWL-ENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQ 564 (1066)
T ss_pred HhhccCCceEEEChHHHHHHHHHH-hcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhc
Confidence 8 3222235 667899999999 79999999999999999999864
Q ss_pred -----------CCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-
Q psy7266 526 -----------ENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD- 577 (1175)
Q Consensus 526 -----------e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~- 577 (1175)
+.+| |||||+ ++++|||.| +++.|.||++||...+. +++..+
T Consensus 565 ~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d--------~~~~G~Dii~~W~~rmi--~~~~~~~ 634 (1066)
T PLN02381 565 KFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTS--------VLETGHDILFFWVARMV--MMGMQLG 634 (1066)
T ss_pred ccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCe--------eeeecchhhhhHHHHHH--HHHHHhC
Confidence 1245 999997 345688988 78899999988655433 233322
Q ss_pred CcccCeEEEeeceee-cCCCcccccCCCccCchhhhhc------------------------------------CCCchh
Q psy7266 578 QYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT------------------------------------GLPADI 620 (1175)
Q Consensus 578 ~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~------------------------------------~~gaDa 620 (1175)
+..|+++|++||+|. .+|+|||||+||||+|.++|+. .||+|+
T Consensus 635 ~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADa 714 (1066)
T PLN02381 635 GDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDA 714 (1066)
T ss_pred CCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHH
Confidence 457789999999995 7999999999999999999981 389999
Q ss_pred HHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC-C-----CCCCCCChhhHHHHHHHHHHHH
Q psy7266 621 FRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS-T-----IPEISPIHEDFLLLALINRELS 694 (1175)
Q Consensus 621 lR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~-~-----~p~~~~~~~d~~l~~~l~~~~~ 694 (1175)
|||||++..+.++|++|+++.+.. .+.++|++||.+. |+..+.++ . ++...+...|+||+++++.++.
T Consensus 715 lR~~l~~~~~~~~di~~~~~~v~~--~r~f~nKlwNa~r----f~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~ 788 (1066)
T PLN02381 715 LRFALVSYTAQSDKINLDILRVVG--YRQWCNKLWNAVR----FAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAIS 788 (1066)
T ss_pred HHHHHHcCCccccccCccHHHHHH--HHHHHHHHHHHHH----HHHhhcccccCcccccCccccCHHHHHHHHHHHHHHH
Confidence 999999988889999999999863 3567778887654 43333321 1 1112345689999999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHH
Q psy7266 695 AYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIA 772 (1175)
Q Consensus 695 ~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~ 772 (1175)
.+.++|++|+|+.|++.|++| .++||+||+..+||.+.++...+.. ...+..++..++..+++||+|||||+||+||
T Consensus 789 ~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~-r~~a~~~L~~vL~~llrLL~PfmPfitEELw 867 (1066)
T PLN02381 789 KTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASE-RAAAQDTLWICLDTGLRLLHPFMPFVTEELW 867 (1066)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHH-HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 999999999999999999999 6999999999999976432100111 1234456688889999999999999999999
Q ss_pred HHcCC
Q psy7266 773 SQLGA 777 (1175)
Q Consensus 773 ~~L~~ 777 (1175)
+.|+.
T Consensus 868 ~~L~~ 872 (1066)
T PLN02381 868 QRLPQ 872 (1066)
T ss_pred HHhhh
Confidence 99964
No 16
>KOG0436|consensus
Probab=100.00 E-value=7.2e-87 Score=717.97 Aligned_cols=468 Identities=27% Similarity=0.419 Sum_probs=423.5
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
+.+.+++|+|+.|||..|||||+++.++ +|+++||+|++|..|+|..|||+||++|+..|+..|.+|.++||...+.|+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~ll-aDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLL-ADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHH-HHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 4569999999999999999999998777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc-CCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV-CPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~-cP~c~~~d~~G~~c~~ 437 (1175)
.+++..||.|+.|+||+||.|...||++|..+.++|+||++.+.+|||++|++|+++..|... ||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 999999999999999999999999999999999999999999999999999999999887522 210
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCCCcEeeec---c
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSS-NARVICKAWLKDGLKPRCITR---D 513 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~wl~~~l~dw~ISR---~ 513 (1175)
| .++...+|++++++.+++|||+|++|+..|.+++.+++.+..| ...+.+..||+.||.|.+||| .
T Consensus 183 -g---------k~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsar 252 (578)
T KOG0436|consen 183 -G---------KVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSAR 252 (578)
T ss_pred -C---------ceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhh
Confidence 1 1344558999999999999999999999999999999887655 567899999999999999999 4
Q ss_pred CCCCcccCCCCCCCce-EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHH
Q psy7266 514 LKWGIPVPLPGFENKY-SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574 (1175)
Q Consensus 514 ~~WG~piP~~~~e~~v-vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~ 574 (1175)
+.||||+|.+. ..++ |||||+ .+.-+||+. +|+|||||+.||++||||+||+
T Consensus 253 l~WGIPvP~dd-sQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat--------~HvIGKDIlrFHavYWPafLma 323 (578)
T KOG0436|consen 253 LDWGIPVPGDD-SQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPAT--------LHVIGKDILRFHAVYWPAFLMA 323 (578)
T ss_pred cccCCCCCCCC-cceEEEeHHHHhhHHHhhcCCchhccccceeecCCCce--------eeehhhhhhhhhhhhhHHHHHh
Confidence 89999999764 4455 999997 456789997 9999999999999999999999
Q ss_pred hCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHH
Q psy7266 575 AGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNL 654 (1175)
Q Consensus 575 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l 654 (1175)
+| .++|+.|++|||++.+|.|||||+||||+|.+++++ ||+|++||||++.+..+.|.+|+++.+....|.+|++.+
T Consensus 324 AG--lplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~l 400 (578)
T KOG0436|consen 324 AG--LPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTL 400 (578)
T ss_pred cC--CCCccEEEEeeeeeecceecchhhccccCHHHHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 97 679999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHh-cCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy7266 655 GNFINRALS--FIEKN-YGS-TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWV 730 (1175)
Q Consensus 655 ~n~~~r~~~--~~~~~-~~~-~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~ 730 (1175)
||++||++. +..++ ..+ ..+......++..+...++.+.+.+.+.++.|.+..+++++.++.+.+|.|++..+||.
T Consensus 401 G~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWk 480 (578)
T KOG0436|consen 401 GNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWK 480 (578)
T ss_pred HHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCCce
Confidence 999999987 43333 222 22222334566778999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccC
Q psy7266 731 LFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKY 782 (1175)
Q Consensus 731 l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~ 782 (1175)
+.++...+...+..++..++++++++++||+|+||.+|.+|+++||.+....
T Consensus 481 l~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 481 LFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQR 532 (578)
T ss_pred eccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhc
Confidence 9887766777788899999999999999999999999999999999986544
No 17
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.2e-86 Score=805.90 Aligned_cols=486 Identities=30% Similarity=0.488 Sum_probs=437.9
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
++|+||+|||||||.+||||+++.++ +|+++||+||+|++|.|++|+|+||++|+..|++.|++|.++|++|+..|.++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~-~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLA-ADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHH-HHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999997655 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 361 YEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 361 ~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
++.|||++|.|.+|+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|+++++..
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~-------------------- 139 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE-------------------- 139 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--------------------
Confidence 999999999999999999999999999999999999999999999999999999998641
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHHhhcCCCcEeeec-cCCCCc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLKWGI 518 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl~~~l~dw~ISR-~~~WG~ 518 (1175)
..|+|+|||++++++.++||||+|+.+++.+.++++++... +|+..++.+.+|++++++|||||| +++||+
T Consensus 140 -------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGi 212 (511)
T PRK11893 140 -------DGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGI 212 (511)
T ss_pred -------CCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCc
Confidence 01789999999999999999999999999999999874332 577788889999988899999999 999999
Q ss_pred ccCCCCCCCce--EEecCc-------c-----------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCC
Q psy7266 519 PVPLPGFENKY--SLSSSP-------S-----------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 578 (1175)
Q Consensus 519 piP~~~~e~~v--vWfds~-------~-----------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~ 578 (1175)
|+|.+ ++++ |||||+ . |.+|||.| +|++|+||++||+++||+++++++
T Consensus 213 piP~~--~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--------~~~~G~D~~~~h~~~~~a~~~a~~-- 280 (511)
T PRK11893 213 PVPGD--PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--------VHLIGKDILRFHAVYWPAFLMAAG-- 280 (511)
T ss_pred cCCCC--CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--------ceEecccccccchhHHHHHHHhCC--
Confidence 99975 5666 999987 1 56789987 899999999999999999999874
Q ss_pred cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHH
Q psy7266 579 YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFI 658 (1175)
Q Consensus 579 ~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~ 658 (1175)
..+|+++++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+....|.+|.+.++|++
T Consensus 281 ~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 281 LPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999996 9999999999998898999999999999889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChh
Q psy7266 659 NRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPE 737 (1175)
Q Consensus 659 ~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~ 737 (1175)
+|+.+++.+.+++.+|.. .+...|+|+++.++.+++.+.++|++|+++.|++.|++|++.+|+|++..+||.+.++
T Consensus 360 ~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~--- 436 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKT--- 436 (511)
T ss_pred HHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcC---
Confidence 999999887766656542 3467789999999999999999999999999999999999999999999999977653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCc-cccCCCCCCccCCCCCCccccch
Q psy7266 738 QKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPS-LVQFLPTGHKIGTPAPLFRKIEQ 812 (1175)
Q Consensus 738 ~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~-~~~~l~~Gh~i~~p~~LF~ki~~ 812 (1175)
+..++.+++++++++++.+++||+|||||+||+||++||.+.... ..... ....++.||.|+.+.+||+||++
T Consensus 437 ~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 510 (511)
T PRK11893 437 DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDEN--RDFAALSWGRLAPGTTLPKPEPIFPRLEE 510 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccc--cchhhhhcccCCCCCCCCCCCCCccCCCC
Confidence 334678899999999999999999999999999999999754321 11110 12346679999999999999985
No 18
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-85 Score=843.93 Aligned_cols=511 Identities=15% Similarity=0.217 Sum_probs=413.5
Q ss_pred CCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCc
Q psy7266 244 SKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNT 322 (1175)
Q Consensus 244 ~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v 322 (1175)
.+.|++.++|++ +++|++.++|+.... ...++++|+|++||||+||.|||||+++.++ +|+++||+||+||+|
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~-----~~~~~~~f~~~dgPPyanG~~HiGH~~~~~i-kDii~Ry~rm~G~~V 78 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLK-----RTEGLPEYIFYDGPPFATGLPHYGHILAGTI-KDIVTRYQSMTGHHV 78 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccccc-----ccCCCCCEEEeCCCCCCCCcchhhHHHHHHH-HHHHHHHHHcCCCcc
Confidence 357999999999 999999999976431 1235678999999999999999999999998 999999999999999
Q ss_pred ccccccCCcchHHHHHHH-HcCCCc----------------hhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHH
Q psy7266 323 LYVSGTDEYGTATETKAL-EEGLTP----------------RQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIV 383 (1175)
Q Consensus 323 ~~~~G~D~~G~~ie~~a~-~~g~~p----------------~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v 383 (1175)
+|++||||||+|||..++ +.|+++ .+++.+|.+.+++++++||+++|| .++|+++.|.+.+
T Consensus 79 ~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v 158 (1159)
T PLN02882 79 TRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESV 158 (1159)
T ss_pred cccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHH
Confidence 999999999999999986 557653 346677889999999999976665 4589999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec------------------c----c-----------CCCc-----
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE------------------G----V-----------CPKC----- 425 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~------------------g----~-----------cP~c----- 425 (1175)
+|+|.+|+++|+||++.++++|||.|+|+||+.+++ + . .|.|
T Consensus 159 ~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~V 238 (1159)
T PLN02882 159 WWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCV 238 (1159)
T ss_pred HHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEE
Confidence 999999999999999999999999999999976552 0 0 0110
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 426 -------------------------------------------------------------------------------- 425 (1175)
Q Consensus 426 -------------------------------------------------------------------------------- 425 (1175)
T Consensus 239 nP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~ 318 (1159)
T PLN02882 239 NPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFR 318 (1159)
T ss_pred CCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEE
Confidence
Q ss_pred ----------------------ccc---------------------CCCCCcccccCCc----c----------------
Q psy7266 426 ----------------------RYE---------------------DARGDQCDGCGQL----I---------------- 442 (1175)
Q Consensus 426 ----------------------~~~---------------------d~~G~~c~~~g~~----~---------------- 442 (1175)
|.+ |.+|.+.+.+|.+ +
T Consensus 319 Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~ 398 (1159)
T PLN02882 319 VVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGR 398 (1159)
T ss_pred EEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCC
Confidence 000 0111111111111 0
Q ss_pred ----ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchH-HHHHHHHhhcCCCcEeeeccCCC
Q psy7266 443 ----NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNA-RVICKAWLKDGLKPRCITRDLKW 516 (1175)
Q Consensus 443 ----~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~wl~~~l~dw~ISR~~~W 516 (1175)
..+.|.+|+||||+++++++.++|||++++++++++++.+++. .| |..+ +.++.+|| ++++||||||||+|
T Consensus 399 L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i--~w~P~~~~~~r~~~wl-~~~~DW~ISRqR~W 475 (1159)
T PLN02882 399 LVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQT--YWVPDYVKEKRFHNWL-ENARDWAVSRSRFW 475 (1159)
T ss_pred ccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCc--EEECCcchhhHHHHHH-hcCcccceeecccc
Confidence 1235789999999999999999999999999999999987765 47 5567 47999999 68999999999999
Q ss_pred CcccCCCCCC-------------------------------------------------Cce--EEecCc----------
Q psy7266 517 GIPVPLPGFE-------------------------------------------------NKY--SLSSSP---------- 535 (1175)
Q Consensus 517 G~piP~~~~e-------------------------------------------------~~v--vWfds~---------- 535 (1175)
|+|||+|.|+ .+| |||||+
T Consensus 476 GtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p 555 (1159)
T PLN02882 476 GTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYP 555 (1159)
T ss_pred CCccceEEeCCCCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCc
Confidence 9999998642 056 999998
Q ss_pred -----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-CcccCeEEEeeceeec-CCCcccccCCCccCc
Q psy7266 536 -----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-QYTKVNHIMATEYLNY-EDGKFSKSRGTGVFG 608 (1175)
Q Consensus 536 -----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~~~~p~~i~~~g~l~~-~G~KMSKS~GN~v~~ 608 (1175)
.|..+||.| +++.|+||++|| ++..++++..+ +..+|++|++||||+. +|+|||||+||+|+|
T Consensus 556 ~e~~~~f~~~~PaD--------~i~eG~Dq~RgW--f~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP 625 (1159)
T PLN02882 556 FENKELFEKNFPAD--------FVAEGLDQTRGW--FYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDP 625 (1159)
T ss_pred ccChhHhhccCCce--------EEEEecchhhhH--HHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCH
Confidence 134568888 899999999986 33344444332 5788999999999986 899999999999999
Q ss_pred hhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhcCCCCCCC------CC
Q psy7266 609 NNAKDTGLPADIFRFYLLYVRP-ENQDTSFSWQDLATKNNSE---LLNNLGNFINRALSFIEKNYGSTIPEI------SP 678 (1175)
Q Consensus 609 ~d~i~~~~gaDalR~~ll~~~~-~~~D~~f~~~~~~~~~n~~---l~~~l~n~~~r~~~~~~~~~~~~~p~~------~~ 678 (1175)
.++++. ||+|+|||||++... .++|++|+++.+.+..+.. +.|.++++++++..+..+++++..|.. ..
T Consensus 626 ~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~ 704 (1159)
T PLN02882 626 NEVIDK-YGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSA 704 (1159)
T ss_pred HHHHHH-hCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccC
Confidence 999996 999999999997543 3688999999987643322 344444455555554444445555531 23
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7266 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISR-YCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLS 757 (1175)
Q Consensus 679 ~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~-~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~ 757 (1175)
...|+||+++++.+++.+.++|++|+|+.|++.|++|+. +||+|++.++||.+.+++ ..++.+++++++++++.++
T Consensus 705 ~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~---~~~~~~al~tL~~vL~~l~ 781 (1159)
T PLN02882 705 NVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTG---EEDCRTALSTLYNVLLTSC 781 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCC---hHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999974 899999999999876542 2345678899999999999
Q ss_pred HHccchhhHHHHHHHHHcCC
Q psy7266 758 LLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 758 ~lL~PfmP~~se~i~~~L~~ 777 (1175)
+||+|||||+||+||++|+.
T Consensus 782 ~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 782 KVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHhhchhhHHHHHHHHHhcc
Confidence 99999999999999999975
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-85 Score=842.41 Aligned_cols=512 Identities=18% Similarity=0.219 Sum_probs=415.9
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.++|++ +++|++.++|+..... ..++++|+|++||||+||.|||||+++.++ .|+++||+||+||
T Consensus 6 ~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~-----~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~-kD~i~Ry~rm~G~ 79 (975)
T PRK06039 6 EVDSQPDFPALEEEVLKFWKENDIFEKSIEN-----REGGPEFVFYDGPPTANGLPHYGHLLTRTI-KDVVPRYKTMKGY 79 (975)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcccCccc-----cCCCCCEEEeCCCCCCCCCccHhhhHhhHH-HHHHHHHHHhCCC
Confidence 45678999999999 9999999999764311 236788999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH-cCCC----------------chhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE-EGLT----------------PRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTE 381 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~-~g~~----------------p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~ 381 (1175)
+|+|++||||||+|||.++++ .|++ +.+++++|.+.+++++++||+++||.+ .|+||.|.+
T Consensus 80 ~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~ 159 (975)
T PRK06039 80 KVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYME 159 (975)
T ss_pred cccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHH
Confidence 999999999999999999986 4765 467888899999999999999999864 699999999
Q ss_pred HHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc-C--------------------------------------
Q psy7266 382 IVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV-C-------------------------------------- 422 (1175)
Q Consensus 382 ~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~-c-------------------------------------- 422 (1175)
.|+|+|.+|+++|+||++.++++|||.|+|+|||.+|++. +
T Consensus 160 ~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~ava 239 (975)
T PRK06039 160 SVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALA 239 (975)
T ss_pred HHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEE
Confidence 9999999999999999999999999999999999877510 0
Q ss_pred --CCccc-------------------------------------------------------------------------
Q psy7266 423 --PKCRY------------------------------------------------------------------------- 427 (1175)
Q Consensus 423 --P~c~~------------------------------------------------------------------------- 427 (1175)
|...|
T Consensus 240 V~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~ 319 (975)
T PRK06039 240 VHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVH 319 (975)
T ss_pred ECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCcccee
Confidence 11100
Q ss_pred -----------------------cCCCCCcccccCCcc------------------------ccccccCCcccCCCCccE
Q psy7266 428 -----------------------EDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPT 460 (1175)
Q Consensus 428 -----------------------~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~ 460 (1175)
-|..|.+.+.+|.+. ..++|.+|+|||||++++
T Consensus 320 ~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~ 399 (975)
T PRK06039 320 IAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLI 399 (975)
T ss_pred eCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEE
Confidence 011222222222110 123578999999999999
Q ss_pred EeecccccccchhHHHHHHHHHHhcCCCCCchHHH-HHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------
Q psy7266 461 VKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARV-ICKAWLKDGLKPRCITRDLKWGIPVPLPGFE------------- 526 (1175)
Q Consensus 461 ~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e------------- 526 (1175)
++.++||||+++++++++++++++.. .+|+..++ ++.+|| ++++||||||||+||||||+|.|+
T Consensus 400 ~~~~~qWFi~~~~~k~~ll~~~~~i~-~~P~~~~~~~~~~wl-~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~e 477 (975)
T PRK06039 400 YYATESWFIRVTKIKDRMLELNQKIN-WYPEHIKDGRFGKWL-ENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEE 477 (975)
T ss_pred EEecCeeeEecHHHHHHHHHhhCCeE-EECcccchhhHHHHH-hcCccceeeeccccCCcceEEEecCCCeEEEeccHHH
Confidence 99999999999999999999998753 34667787 999999 589999999999999999987542
Q ss_pred -----------------------------------Cce--EEecCc---------------cccccCCCCCCCCcceEEE
Q psy7266 527 -----------------------------------NKY--SLSSSP---------------SLVQFLPTATPQSKITLYQ 554 (1175)
Q Consensus 527 -----------------------------------~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~ 554 (1175)
.+| |||||+ .|.+|||.| ++
T Consensus 478 l~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad--------~~ 549 (975)
T PRK06039 478 LEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPAD--------FI 549 (975)
T ss_pred HHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCce--------EE
Confidence 166 999997 246789998 89
Q ss_pred EeeccccchhHh--HHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC
Q psy7266 555 FMAKDNVPFHSI--MFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE 631 (1175)
Q Consensus 555 ~~GkD~i~fh~~--~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~ 631 (1175)
+.|+||++||-. +..+++. .+..+|+++++||||+ .+|+|||||+||+|+|.++++. ||+|++||||++..+.
T Consensus 550 ~~G~Di~r~Wf~~l~~~~~~~---~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls~~~~ 625 (975)
T PRK06039 550 VEGIDQTRGWFYTLLALSTAL---FDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLSSSAP 625 (975)
T ss_pred EechhhHhhHHHHHHHHHHHh---cCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHhCCCC
Confidence 999999986422 2211111 2456789999999997 5999999999999999999996 9999999999998888
Q ss_pred CCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcCCC---CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHH
Q psy7266 632 NQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEK-NYGST---IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRD 707 (1175)
Q Consensus 632 ~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~-~~~~~---~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~ 707 (1175)
++|++|+++.+.+..|+.+ +++||+++++..+..- .++.. .+...++..|+||+++++.+++.+.++|++|+|+.
T Consensus 626 ~~D~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~ 704 (975)
T PRK06039 626 WEDLRFSEDGVREVVRKFL-LTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITK 704 (975)
T ss_pred CCCceechhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 9999999999777666655 8999988776544321 11101 11123567899999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 708 GIRYILNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 708 a~~~i~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
|++.|++|+ .++|+|++.++++.+...+..+ ...++.++..+++.+++||+|||||+||+||++|+.
T Consensus 705 A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~---~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 705 AARAIRDFVDDLSNWYIRRSRRRFWKEEDDPD---KLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 999999997 6789999998664332221112 234566778999999999999999999999999985
No 20
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=2.3e-85 Score=845.68 Aligned_cols=518 Identities=19% Similarity=0.247 Sum_probs=422.1
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHc
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLV 318 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~ 318 (1175)
+..+++.||+.++|.+ +++|++.++|+..... -++.++++|+|++|||||||.|||||+++.++ +|+++||+||+
T Consensus 21 ~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~---~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~-~D~~~Ry~rm~ 96 (995)
T PTZ00419 21 ISSMAASYDPKEVESGWYEWWEKSGFFKPAEDA---KSLNSGKKFVIVLPPPNVTGYLHIGHALTGAI-QDSLIRYHRMK 96 (995)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHCCCcccCccc---cccCCCCeEEEEeCCCCCCCCCcHHHHHHHHH-HHHHHHHHHhc
Confidence 4557889999999999 9999999999763200 01246788999999999999999999999988 99999999999
Q ss_pred CCCcccccccCCcchHHHHHHH-----HcCCCch------------hhHHHHHHHHHHHHhhcccccccc--CCCCCHHH
Q psy7266 319 NRNTLYVSGTDEYGTATETKAL-----EEGLTPR------------QICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQ 379 (1175)
Q Consensus 319 G~~v~~~~G~D~~G~~ie~~a~-----~~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~ 379 (1175)
|++|+|++||||||+|++.+++ +.|.++. +++++|...+++++++||+++||. ++|+|+.|
T Consensus 97 G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~ 176 (995)
T PTZ00419 97 GDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQR 176 (995)
T ss_pred CCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHH
Confidence 9999999999999999977653 4466554 456788899999999999999985 47999999
Q ss_pred HHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec---------------------cc-----------------
Q psy7266 380 TEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE---------------------GV----------------- 421 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~---------------------g~----------------- 421 (1175)
.+.++++|.+|+++|+||++.++++|||.|+|+|||.+|+ |.
T Consensus 177 ~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~ 256 (995)
T PTZ00419 177 SKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIV 256 (995)
T ss_pred HHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEE
Confidence 9999999999999999999999999999999999998765 20
Q ss_pred ----C-----------------------------CC-cc----------c------------------------------
Q psy7266 422 ----C-----------------------------PK-CR----------Y------------------------------ 427 (1175)
Q Consensus 422 ----c-----------------------------P~-c~----------~------------------------------ 427 (1175)
. |. .+ +
T Consensus 257 vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~ 336 (995)
T PTZ00419 257 VATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLP 336 (995)
T ss_pred EEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCC
Confidence 0 11 00 0
Q ss_pred ----cCCCCCcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHH
Q psy7266 428 ----EDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479 (1175)
Q Consensus 428 ----~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~ 479 (1175)
.+.+|.+.+++|.+. ..++|.+|+|||||++++++.++||||++++++++++
T Consensus 337 ~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al 416 (995)
T PTZ00419 337 FINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAV 416 (995)
T ss_pred eeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHH
Confidence 012333333343321 1346889999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC---------------------------------
Q psy7266 480 SWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF--------------------------------- 525 (1175)
Q Consensus 480 ~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~--------------------------------- 525 (1175)
+++++....| |...++++.+|| ++++||||||||+||||||+|+|
T Consensus 417 ~~v~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (995)
T PTZ00419 417 EAVRNGELKIIPSSHENVWYHWL-ENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFG 495 (995)
T ss_pred HHhhcCCeEEEChHHHHHHHHHH-hccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccC
Confidence 9998654444 667899999999 68999999999999999999743
Q ss_pred ----------CCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-C
Q psy7266 526 ----------ENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-Q 578 (1175)
Q Consensus 526 ----------e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~ 578 (1175)
+.+| |||||+ ++.+|||.| +++.|+||++||.... ++++..+ +
T Consensus 496 ~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d--------~~~~G~Dii~~W~arm--~~~~~~~~~ 565 (995)
T PTZ00419 496 LSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTS--------LLETGSDILFFWVARM--VMMSLHLTD 565 (995)
T ss_pred CccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCc--------EEEechhHHhHHHHHH--HHHHHHhcC
Confidence 1267 999998 245689998 8999999999755443 3333332 2
Q ss_pred cccCeEEEeeceee-cCCCcccccCCCccCchhhhhc------------------------------------CCCchhH
Q psy7266 579 YTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT------------------------------------GLPADIF 621 (1175)
Q Consensus 579 ~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~------------------------------------~~gaDal 621 (1175)
..|++.|++||+|. .+|+|||||+||||+|.++++. .||+|++
T Consensus 566 ~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDal 645 (995)
T PTZ00419 566 KLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDAL 645 (995)
T ss_pred CCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHH
Confidence 34569999999996 5999999999999999999981 3999999
Q ss_pred HHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC---C----CCCCCChhhHHHHHHHHHHHH
Q psy7266 622 RFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST---I----PEISPIHEDFLLLALINRELS 694 (1175)
Q Consensus 622 R~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~---~----p~~~~~~~d~~l~~~l~~~~~ 694 (1175)
||||++.++.++|++|+.+.+.. .++|+|++||.+++++..+....... . +...+...|+||+++++.+++
T Consensus 646 R~~l~~~~~~~~Di~~~~~~v~~--~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~ 723 (995)
T PTZ00419 646 RFGLLAYTQQGRNINLDINRVVG--YRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIK 723 (995)
T ss_pred HHHHHhcCCCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 36789999998877665543321111 1 112345679999999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHH
Q psy7266 695 AYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIA 772 (1175)
Q Consensus 695 ~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~ 772 (1175)
.+.++|++|+|+.|++.|++| .++||+||+.++||.....+ ..+...+..++..+++.+++||+|||||+||+||
T Consensus 724 ~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~---~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw 800 (995)
T PTZ00419 724 EVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSD---GERKQHAQDVLHTVLDIGLRLLHPMMPFITEELY 800 (995)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCC---cHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999997 59999999999999732221 1223456777899999999999999999999999
Q ss_pred HHcCC
Q psy7266 773 SQLGA 777 (1175)
Q Consensus 773 ~~L~~ 777 (1175)
++|+.
T Consensus 801 ~~L~~ 805 (995)
T PTZ00419 801 QRLPN 805 (995)
T ss_pred Hhhhc
Confidence 99974
No 21
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-84 Score=825.99 Aligned_cols=506 Identities=16% Similarity=0.216 Sum_probs=414.7
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.++++.++|.+ +++|++.++|+.... +..++++|+|++||||+||.|||||+++.++ +|+++||+||+||
T Consensus 14 ~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~-----~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~-~Dii~Ry~rm~G~ 87 (912)
T PRK05743 14 DFPMRANLPKREPEILKRWEENDLYQKIRE-----ANKGKPKFILHDGPPYANGDIHIGHALNKIL-KDIIVKSKTMSGF 87 (912)
T ss_pred CCCCCCChHHhhHHHHHHHHHCCCccccch-----hcCCCCcEEEeCCCCCCCCCccHHHHHHHHH-HHHHHHHHHccCC
Confidence 34557999999999 999999999975321 1246788999999999999999999999888 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHHc------CCCchh-------hHHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALEE------GLTPRQ-------ICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQH 385 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~~------g~~p~~-------~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~ 385 (1175)
+|+|++||||||+|||.++++. ++++.+ +++++.+.+++++++||+++||. ++|++|.|.+.+++
T Consensus 88 ~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~ 167 (912)
T PRK05743 88 DAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIR 167 (912)
T ss_pred cccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHH
Confidence 9999999999999999999875 666664 67778899999999999977764 57999999999999
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceec----------------c---------c-------C-----------
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE----------------G---------V-------C----------- 422 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~----------------g---------~-------c----------- 422 (1175)
+|.+|+++|+||++.++++|||.|+|+|||.+|+ + . .
T Consensus 168 ~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aia 247 (912)
T PRK05743 168 ALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIA 247 (912)
T ss_pred HHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEE
Confidence 9999999999999999999999999999998764 1 0 0
Q ss_pred --CCcc----------c---------------------------------------------------------------
Q psy7266 423 --PKCR----------Y--------------------------------------------------------------- 427 (1175)
Q Consensus 423 --P~c~----------~--------------------------------------------------------------- 427 (1175)
|... |
T Consensus 248 v~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~ 327 (912)
T PRK05743 248 VHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHT 327 (912)
T ss_pred ECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEe
Confidence 1000 0
Q ss_pred ----------------------cCCCCCcccccCCcc------------------------ccccccCCcccCCCCccEE
Q psy7266 428 ----------------------EDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 428 ----------------------~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~ 461 (1175)
-|.+|.+.+.+|.+. ..+.|.+|+||||++++++
T Consensus 328 aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~ 407 (912)
T PRK05743 328 APGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIF 407 (912)
T ss_pred CCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEE
Confidence 012222222222210 1235789999999999999
Q ss_pred eecccccccchh--HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------
Q psy7266 462 KSSTQLFLELPK--IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE------------- 526 (1175)
Q Consensus 462 ~~~~qwfl~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e------------- 526 (1175)
|.++|||+++++ +++.+++.+++.. ++|+..++++.+|| ++++||||||||+||+|||+|+|+
T Consensus 408 r~~~QWFi~~~~~~~k~~~l~~~~~v~-~~P~~~~~r~~~~i-~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~ 485 (912)
T PRK05743 408 RATPQWFISMDKKGLREQALKAIEKVK-WIPAWGKNRIESMV-ENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIE 485 (912)
T ss_pred EecCcccEeCChHHHHHHHHHHHcccE-EEChHHHHHHHHHH-hcCcCccccccceeCceEEEEEECCCCcEeecHHHHH
Confidence 999999999998 9999999998763 34667899999999 589999999999999999996431
Q ss_pred ---------------------------------Cce--EEecCc-------c--ccccCCCCCCCCcceEEEEeeccccc
Q psy7266 527 ---------------------------------NKY--SLSSSP-------S--LVQFLPTATPQSKITLYQFMAKDNVP 562 (1175)
Q Consensus 527 ---------------------------------~~v--vWfds~-------~--~~~~wp~~~~~~~v~~~~~~GkD~i~ 562 (1175)
.+| |||||+ . ...|||.| +|+.|+||++
T Consensus 486 ~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~D--------l~~~G~Di~r 557 (912)
T PRK05743 486 HVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRPELGYPAD--------LYLEGSDQHR 557 (912)
T ss_pred HHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCccccCCCce--------EEEecccccc
Confidence 235 999986 1 13689998 9999999995
Q ss_pred --hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q psy7266 563 --FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 563 --fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
||..+|+++++ . +..||+.|++||||+ .+|+|||||+||+|+|.++++. ||+|++|||+++ .+.++|++|++
T Consensus 558 ~Wf~~~l~~~~~~-~--g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~-~~~~~D~~~s~ 632 (912)
T PRK05743 558 GWFQSSLLTSVAT-R--GKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS-TDYSGDVRISD 632 (912)
T ss_pred hHHHHHHHHHHHh-c--CCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh-cCCCCCeeecH
Confidence 88999999988 3 468899999999997 5999999999999999999996 999999999997 77899999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy7266 640 QDLATKNNSELLNNLGNFINRALSFIEKNYGST------IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYIL 713 (1175)
Q Consensus 640 ~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~------~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~ 713 (1175)
+.+.. +.++.+.++| +++|+..+..+. ++...+...|+|++++++.+++.+.++|++|+|+.|++.|+
T Consensus 633 ~~l~~--~~~~~~kl~N----~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~ 706 (912)
T PRK05743 633 EILKQ--VAEAYRRIRN----TLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLH 706 (912)
T ss_pred HHHHH--HHHHHHHHHH----HHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 98865 3456666666 445555443332 22223567899999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcC
Q psy7266 714 NIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776 (1175)
Q Consensus 714 ~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~ 776 (1175)
+|. +++|+|++..+||.+....... ....+..++..++..+++||+|||||+||+||++|+
T Consensus 707 ~f~~~~ls~~Yie~~K~rly~~~~~~~--~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 707 NFCSVDLSAFYLDIIKDRLYTDAADSL--ARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHhhhhhceeeheeccHhhhcCCCCcH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 997 8999999999998654321111 112334456788888999999999999999999996
No 22
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.8e-86 Score=770.90 Aligned_cols=371 Identities=38% Similarity=0.738 Sum_probs=328.8
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
|+||+|+|||||.|||||++ .+|.+|+++||+|++|++|+|++|+|+||++|+.+|+++|++|.++|+++++.|+++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 66679999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 363 WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 363 ~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
.|||++|.|.||+++.|.++|+++|.+|+++|+||++++.++||+.|++||+|++|+|+||.|++..++|++|+.||..+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~ 159 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPL 159 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBE
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCC
Q psy7266 443 NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522 (1175)
Q Consensus 443 ~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~ 522 (1175)
++.++++|+|..||.+++.+.+++|||+|+++++.|.+|+++.+..|++..++++.+||+++|+||||||...||||+|
T Consensus 160 ~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP- 238 (391)
T PF09334_consen 160 EPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP- 238 (391)
T ss_dssp ECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEET-
T ss_pred ccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceee-
Confidence 9999999999999999999999999999999999999999988655888899999999999999999999999999999
Q ss_pred CCCCCce--EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 523 PGFENKY--SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 523 ~~~e~~v--vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
+.+++| ||||++ .|.+||+.+ .+++++||+|+||++||+++||+|+++. ++++|
T Consensus 239 -~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~---~~~~~v~~iGkDi~~fH~i~~pa~l~a~--~~~lP 312 (391)
T PF09334_consen 239 -GDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWAND---SDVEIVHFIGKDIIRFHAIYWPAMLLAA--GLPLP 312 (391)
T ss_dssp -TEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST-----SEEEEEEEGGGHHHHHTHHHHHHHHC--TB---
T ss_pred -ccCCceEEEcchHHHHHHHHhccccccccccchhhhhcccc---CCceEEEEEccchhHHHHHHhHHHHhcc--cCCCC
Confidence 446777 999987 367889555 6889999999999999999999999996 48899
Q ss_pred eEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 583 ~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
+++++|||++++|+|||||+||+|+|.++++. ||+|++||||++.+|.++|.+|++++|.+++|++|+|++||+++|++
T Consensus 313 ~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~~ 391 (391)
T PF09334_consen 313 RRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRVL 391 (391)
T ss_dssp SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred CEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhccC
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999974
No 23
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.3e-82 Score=812.37 Aligned_cols=510 Identities=15% Similarity=0.183 Sum_probs=404.3
Q ss_pred cccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcC
Q psy7266 241 SSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319 (1175)
Q Consensus 241 ~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G 319 (1175)
..++..|++.++|++ +++|++.++|+.... ...++++|+|++||||+||.|||||+++.++ +|+++||+||+|
T Consensus 66 ~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~-----~~~~~~~Fv~~~gPPyanG~lHiGHal~~ti-kDii~Ry~rm~G 139 (1205)
T PTZ00427 66 TGVSENPNIVEEEEKVLKYWKSIDAFNTSNK-----LAKNKKAYIFYDGPPFATGLPHYGHLLAGII-KDCVTRYFYQCG 139 (1205)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcccCcc-----ccCCCCcEEEecCCCCCCCCcchhHHHHHHH-HHHHHHHHHcCC
Confidence 356778999999999 999999999976431 1135678999999999999999999999998 999999999999
Q ss_pred CCcccccccCCcchHHHHHHHH-cCCC----------------chhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHH
Q psy7266 320 RNTLYVSGTDEYGTATETKALE-EGLT----------------PRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQT 380 (1175)
Q Consensus 320 ~~v~~~~G~D~~G~~ie~~a~~-~g~~----------------p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~ 380 (1175)
|+|+|++||||||+|||..+++ .|++ |.+++++|.+.+++++++||+++|| .++|+++.|.
T Consensus 140 ~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~ 219 (1205)
T PTZ00427 140 FSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFM 219 (1205)
T ss_pred CeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHH
Confidence 9999999999999999999874 3432 3556777889999999999966665 5689999999
Q ss_pred HHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----------------------------------------
Q psy7266 381 EIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE----------------------------------------- 419 (1175)
Q Consensus 381 ~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~----------------------------------------- 419 (1175)
+.|+++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus 220 ~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1205)
T PTZ00427 220 ESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKY 299 (1205)
T ss_pred HHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccce
Confidence 999999999999999999999999999999999998761
Q ss_pred -------------------------c-c-C-------------------CC-------c---------------------
Q psy7266 420 -------------------------G-V-C-------------------PK-------C--------------------- 425 (1175)
Q Consensus 420 -------------------------g-~-c-------------------P~-------c--------------------- 425 (1175)
+ . . |. +
T Consensus 300 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~ 379 (1205)
T PTZ00427 300 SVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKEL 379 (1205)
T ss_pred eeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhh
Confidence 0 0 0 21 0
Q ss_pred -------------------------------------cc---------------------------cC-----CCC----
Q psy7266 426 -------------------------------------RY---------------------------ED-----ARG---- 432 (1175)
Q Consensus 426 -------------------------------------~~---------------------------~d-----~~G---- 432 (1175)
+. +| ..|
T Consensus 380 ~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~ 459 (1205)
T PTZ00427 380 KWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDP 459 (1205)
T ss_pred cccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCc
Confidence 00 00 001
Q ss_pred -------------CcccccCCc----c--------------------ccccccCCcccCCCCccEEeecccccccchhHH
Q psy7266 433 -------------DQCDGCGQL----I--------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIE 475 (1175)
Q Consensus 433 -------------~~c~~~g~~----~--------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~ 475 (1175)
.+.+.+|.+ + ..+.|.+|+|||||+|++++.++|||+++++++
T Consensus 460 ~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k 539 (1205)
T PTZ00427 460 EKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNST 539 (1205)
T ss_pred cccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHH
Confidence 111111110 0 123578999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCc-hH-HHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCC--------------------------
Q psy7266 476 DKLQSWVSETSDQWSS-NA-RVICKAWLKDGLKPRCITRDLKWGIPVPLPGFEN-------------------------- 527 (1175)
Q Consensus 476 ~~l~~~~~~~~~~~~~-~~-~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~-------------------------- 527 (1175)
+.+++.+++. .|.| .+ ++++.+|| ++++||||||||+||||||+|.|++
T Consensus 540 ~~~l~~~~~i--~w~P~~~~~~r~~~wl-~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh 616 (1205)
T PTZ00427 540 NELVKNNETT--YWIPAHIKEKKFHNWI-KDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLH 616 (1205)
T ss_pred HHHHHcCCcc--EEeCchhhHhHHHHHH-hcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhc
Confidence 9988876554 3755 56 58999999 6899999999999999999886420
Q ss_pred ------------------------ce--EEecCc-------c---------ccccCCCCCCCCcceEEEEeeccccchhH
Q psy7266 528 ------------------------KY--SLSSSP-------S---------LVQFLPTATPQSKITLYQFMAKDNVPFHS 565 (1175)
Q Consensus 528 ------------------------~v--vWfds~-------~---------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~ 565 (1175)
+| |||||+ . |+++||+| +...|.||+++|-
T Consensus 617 ~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD--------~i~eG~Dq~rgWf 688 (1205)
T PTZ00427 617 RHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPAD--------FIAEGLDQTRGWF 688 (1205)
T ss_pred ccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCce--------EEEEecchhccHH
Confidence 26 999997 2 33578887 8899999998765
Q ss_pred hHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHH
Q psy7266 566 IMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP-ENQDTSFSWQDLA 643 (1175)
Q Consensus 566 ~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~-~~~D~~f~~~~~~ 643 (1175)
.....+-.++ .+..|+++|++||||+ .+|+|||||+||+|+|.++++. ||+|++||||++... .++|++|+++.+.
T Consensus 689 ~s~l~~s~~l-~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~ 766 (1205)
T PTZ00427 689 YTLLVISTLL-FDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVN 766 (1205)
T ss_pred HHHHHHHHHh-cCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHH
Confidence 4432211111 2467779999999997 5999999999999999999996 999999999998755 4789999999987
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcC--------CC--CC---CCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q psy7266 644 TKNNSELLNNLGNFINRALSFIEKNYG--------ST--IP---EISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIR 710 (1175)
Q Consensus 644 ~~~n~~l~~~l~n~~~r~~~~~~~~~~--------~~--~p---~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~ 710 (1175)
+..++ ++++++|.. +|+..+.. +. .+ .......|+||+++++.+++.+.++|++|+|+.|++
T Consensus 767 e~~r~-~l~klwN~~----rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~ 841 (1205)
T PTZ00427 767 EVVKS-FILPFYHSF----RFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLP 841 (1205)
T ss_pred HHHHH-HHHHHHHHH----HHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 65544 446666643 44333221 11 01 112466899999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 711 YILNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 711 ~i~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
.|++|+ ++|||||+.++++.+...+.. ...+++++++++|+.+++||+|||||+||+||++|+.
T Consensus 842 ~i~~Fi~~lsnwYIe~~K~rl~~~~~~~---~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 842 KLLQFIENLTNWYIRLNRDRMRGSLGEE---NCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHhccHHHHHcchhhccCCCcH---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 999996 599999999998654321111 2346778889999999999999999999999999964
No 24
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-82 Score=808.67 Aligned_cols=510 Identities=16% Similarity=0.190 Sum_probs=411.1
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.+++..++|.+ +++|++.++|+.... ...++++|+|++||||+||.|||||+++.+| .|+++||+||+||
T Consensus 19 ~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~-----~~~~~~~f~l~dgPPyanG~lHiGHaln~~l-kDii~Ry~rm~G~ 92 (961)
T PRK13804 19 AFPMRAGLPQKEPEIQARWEEIDLYKKLRE-----QAKGRPKFVLHDGPPYANGNIHIGHALNKIL-KDVIVRSKQMLGF 92 (961)
T ss_pred CCCCCCChHHhHHHHHHHHHHCCCcccccc-----ccCCCCcEEEeCCCCCCCCCccHHHHHHHHH-HHHHHHHHHhcCC
Confidence 44557899999999 999999999976431 1246788999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHHc----CCCc------------hhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALEE----GLTP------------RQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~~----g~~p------------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++||||||+|||.++++. |.+. .++++++.+.+++++++||++.||.+ .|++|.|.+.
T Consensus 93 ~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~ 172 (961)
T PRK13804 93 DANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEAR 172 (961)
T ss_pred cccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHH
Confidence 9999999999999999988654 3432 23556678899999999999999865 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----------------c------cC-----------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----------------G------VC----------------- 422 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----------------g------~c----------------- 422 (1175)
++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+ + .+
T Consensus 173 ~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~a 252 (961)
T PRK13804 173 IAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRA 252 (961)
T ss_pred HHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeE
Confidence 9999999999999999999999999999999997664 1 00
Q ss_pred ----CCccc---------------------------------------c-------------------------------
Q psy7266 423 ----PKCRY---------------------------------------E------------------------------- 428 (1175)
Q Consensus 423 ----P~c~~---------------------------------------~------------------------------- 428 (1175)
|...| .
T Consensus 253 iav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pv 332 (961)
T PRK13804 253 ISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPV 332 (961)
T ss_pred EEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEE
Confidence 11100 0
Q ss_pred -----------------------------------------CCCCCcccccCCc-------c------------------
Q psy7266 429 -----------------------------------------DARGDQCDGCGQL-------I------------------ 442 (1175)
Q Consensus 429 -----------------------------------------d~~G~~c~~~g~~-------~------------------ 442 (1175)
|..|.+.+.+|.+ +
T Consensus 333 i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~ 412 (961)
T PRK13804 333 LDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIE 412 (961)
T ss_pred EecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHh
Confidence 0011111111210 0
Q ss_pred -------ccccccCCcccCCCCccEEeecccccccchh-------HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcE
Q psy7266 443 -------NAIELIQPRCKQCSQAPTVKSSTQLFLELPK-------IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPR 508 (1175)
Q Consensus 443 -------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw 508 (1175)
..+.|.+|+|||||+++++|.++|||++++. +++.+++.++++. ..|+..++++.+|| ++++||
T Consensus 413 ~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~-~~P~~~~~r~~~~i-~~~~DW 490 (961)
T PRK13804 413 AGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTR-FVPAAGQNRLYNMI-EDRPDW 490 (961)
T ss_pred CCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHhccE-EECHHHHHHHHHHH-hcCccc
Confidence 1234789999999999999999999999998 9999999998763 34667899999999 689999
Q ss_pred eeeccCCCCcccCCCCC------------------------------------------------CCce--EEecCc---
Q psy7266 509 CITRDLKWGIPVPLPGF------------------------------------------------ENKY--SLSSSP--- 535 (1175)
Q Consensus 509 ~ISR~~~WG~piP~~~~------------------------------------------------e~~v--vWfds~--- 535 (1175)
||||||+||+|||+|+| +.+| |||||+
T Consensus 491 cISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~ 570 (961)
T PRK13804 491 VISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTH 570 (961)
T ss_pred eeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCc
Confidence 99999999999999643 1245 999997
Q ss_pred ----cc--cccCCCCCCCCcceEEEEeeccccc--hhHhHHHHHHHHhCC-CcccCeEEEeeceee-cCCCcccccCCCc
Q psy7266 536 ----SL--VQFLPTATPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGD-QYTKVNHIMATEYLN-YEDGKFSKSRGTG 605 (1175)
Q Consensus 536 ----~~--~~~wp~~~~~~~v~~~~~~GkD~i~--fh~~~~pa~l~~~~~-~~~~p~~i~~~g~l~-~~G~KMSKS~GN~ 605 (1175)
+. ..+||.| +|++|+||++ ||+.+. ++... +..||++|++|||++ .+|+|||||+||+
T Consensus 571 ~~~~~~~~~~~~PaD--------~~~eG~Di~rgWF~s~ll----~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNv 638 (961)
T PRK13804 571 AFVLEDRPDLKWPAD--------LYLEGSDQHRGWFNSSLL----ESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNT 638 (961)
T ss_pred cccccCCcccCCCce--------EEEEEcccccHHHHHHHH----HHHHhcCCCChhhEEEeccEECCCCCCccCCCCCc
Confidence 11 2368988 9999999995 887543 33332 356789999999997 5999999999999
Q ss_pred cCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCChhhH
Q psy7266 606 VFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS--TIPEISPIHEDF 683 (1175)
Q Consensus 606 v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~--~~p~~~~~~~d~ 683 (1175)
|+|.++++. ||+|++|||+++ .+.++|++|+++.+.. ++++++.++|.+.+++..+.....+ .++...+...|+
T Consensus 639 IdP~~ii~~-yGaD~lRl~lls-~~~~~D~~fs~~~l~~--~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~ 714 (961)
T PRK13804 639 VSPQDVIKQ-SGADILRLWVAS-VDYSDDQRIGKEILKQ--VSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELER 714 (961)
T ss_pred CCHHHHHHh-cCHHHHHHHHHh-CCCCCCcccCHHHHHH--HHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHH
Confidence 999999996 999999999997 5788999999999864 4678888999876655544332211 112234567899
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHcc
Q psy7266 684 LLLALINRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLS 761 (1175)
Q Consensus 684 ~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~ 761 (1175)
|++++++.+++.+.++|++|+|++|++.|++|+ ++||+|++..+||.+..... + .....+..++..+++.+++||+
T Consensus 715 wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~-~-~~r~~~~~vL~~il~~l~~lLa 792 (961)
T PRK13804 715 YMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPS-S-LRRRAAQTVFYEIFVRLTKWLA 792 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCC-c-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 68999999999996643211 1 1223455667888999999999
Q ss_pred chhhHHHHHHHHHcCC
Q psy7266 762 PYMPSTASTIASQLGA 777 (1175)
Q Consensus 762 PfmP~~se~i~~~L~~ 777 (1175)
|||||+||+||++|+.
T Consensus 793 Pi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 793 PILPFTAEEAWLYRYP 808 (961)
T ss_pred hhhhhhHHHHHHhccc
Confidence 9999999999999984
No 25
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2e-82 Score=812.40 Aligned_cols=507 Identities=20% Similarity=0.268 Sum_probs=412.3
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
.+.+|++.++|++ +++|++.++|+.... ...++++|+|++|||||||.|||||+++.++ +|+++||+||+||+
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~-----~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~-~D~~~Ry~rm~G~~ 75 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKK-----LNKGKPEFIFHDGPPYANGSIHLGHALNKIL-KDIILRYKTMQGFN 75 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhh-----ccCCCCCeEEecCCCCCCCCccHHHHHHHHH-HHHHHHHHHcCCCc
Confidence 3457999999999 999999999975321 1235788999999999999999999999998 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHc-CCC------c----------hhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKALEE-GLT------P----------RQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~-g~~------p----------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
|+|++|||+||+|||.++++. |++ + .++++++.+.+++++++||+++||.+ .|++|.|.+.
T Consensus 76 v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~ 155 (861)
T TIGR00392 76 VTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEES 155 (861)
T ss_pred cCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHH
Confidence 999999999999999999865 664 3 36777889999999999999998865 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc-c------C-------C-------------------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG-V------C-------P------------------------- 423 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g-~------c-------P------------------------- 423 (1175)
++++|.+|+++|+||++.++++|||.|+|+|||.+|+. . . |
T Consensus 156 ~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~T 235 (861)
T TIGR00392 156 QWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWT 235 (861)
T ss_pred HHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCccc
Confidence 99999999999999999999999999999999987741 0 0 0
Q ss_pred --Cccc-----c--------------------------------------------------------------------
Q psy7266 424 --KCRY-----E-------------------------------------------------------------------- 428 (1175)
Q Consensus 424 --~c~~-----~-------------------------------------------------------------------- 428 (1175)
+|.+ +
T Consensus 236 l~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~ 315 (861)
T TIGR00392 236 LPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVI 315 (861)
T ss_pred ccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEe
Confidence 0000 0
Q ss_pred ---------------------------------------CCCCCccccc----C---Ccc--------------------
Q psy7266 429 ---------------------------------------DARGDQCDGC----G---QLI-------------------- 442 (1175)
Q Consensus 429 ---------------------------------------d~~G~~c~~~----g---~~~-------------------- 442 (1175)
|.+|...+.. | .+.
T Consensus 316 ~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~ 395 (861)
T TIGR00392 316 GGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGL 395 (861)
T ss_pred CCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCC
Confidence 0000000000 0 000
Q ss_pred ----ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCc
Q psy7266 443 ----NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGI 518 (1175)
Q Consensus 443 ----~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~ 518 (1175)
..++|.+|+|||||++++++.++||||+++++++.++++++++. .+|...++++.+|| ++++||||||||+||+
T Consensus 396 l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~-~~P~~~~~~~~~~l-~~l~DW~ISRqr~WG~ 473 (861)
T TIGR00392 396 LLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVN-WVPEWGEGRFGNWL-ENRPDWCISRQRYWGI 473 (861)
T ss_pred eeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcE-EECchHHHHHHHHH-hCCCcceeeccccCCC
Confidence 01246789999999999999999999999999999999998763 46778899999999 5899999999999999
Q ss_pred ccCCCCCC---------------------------------------------------Cce--EEecCc----------
Q psy7266 519 PVPLPGFE---------------------------------------------------NKY--SLSSSP---------- 535 (1175)
Q Consensus 519 piP~~~~e---------------------------------------------------~~v--vWfds~---------- 535 (1175)
|||+|.|+ .+| |||||+
T Consensus 474 pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~ 553 (861)
T TIGR00392 474 PIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYP 553 (861)
T ss_pred eeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCC
Confidence 99997643 236 999996
Q ss_pred ----cccccCCCCCCCCcceEEEEeeccccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCc
Q psy7266 536 ----SLVQFLPTATPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFG 608 (1175)
Q Consensus 536 ----~~~~~wp~~~~~~~v~~~~~~GkD~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~ 608 (1175)
+|.+|||.| ++++|+||++ ||.++|+++++. +..||+.+++||||+ .+|+|||||+||+|+|
T Consensus 554 ~~~~~f~~~~P~d--------~~i~G~Di~r~Wf~~~~~~~~~~~---~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p 622 (861)
T TIGR00392 554 FENEKFKEVFPAD--------FILEGSDQTRGWFYSSLAIGTALF---GQAPYKNVITHGFTLDEKGRKMSKSLGNVVDP 622 (861)
T ss_pred CCcchhhccCCce--------EEEEecchhccHHHHHHHHHHHHc---CCCChHhhEecceEECCCCCCcCCCCCCCCCH
Confidence 246789998 9999999998 899999987763 367889999999997 5999999999999999
Q ss_pred hhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCCCChhh
Q psy7266 609 NNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST------IPEISPIHED 682 (1175)
Q Consensus 609 ~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~------~p~~~~~~~d 682 (1175)
.++++. ||+|++||||++. +.++|++|+++.+... ++.+.|.++|+++++..+ .+..+. ++...+...|
T Consensus 623 ~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~-~~~~~n~l~N~~~~~~~~--~~l~~~~~~~~~~~~~~l~~~d 697 (861)
T TIGR00392 623 LKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQV-VEKYRKIRWNTYRFLLTY--ANLDKFDPLFNSVAVEKFPEED 697 (861)
T ss_pred HHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHH-HHHHHHHHHHHHHHHHHH--hccccCCccccccccccCCHHH
Confidence 999996 9999999999998 8899999999998642 334555555554444310 222211 1222356789
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHhcCc--ccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy7266 683 FLLLALINRELSAYYSVLDKAKLRDGIRYILNISR--YCNQYMQTQQP--WVLFKGSPEQKSRASTVLGILCQVSYLLSL 758 (1175)
Q Consensus 683 ~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~--~~n~yi~~~kp--w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~ 758 (1175)
+|++++++.+++.+.++|++|+|+.|++.|++|+. ++|+|++..+| |...++ .+ .+ ++..++..+++.+++
T Consensus 698 ~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~--~~-~~--~~~~~l~~~l~~l~~ 772 (861)
T TIGR00392 698 RWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD--ND-KR--AAQTTLYYALLTLVR 772 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCC--HH-HH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999963 79999999987 544332 11 12 455667889999999
Q ss_pred HccchhhHHHHHHHHHcCCC
Q psy7266 759 LLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 759 lL~PfmP~~se~i~~~L~~~ 778 (1175)
||+|||||+||+||++|+..
T Consensus 773 lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 773 LLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHhhhhhHHHHHHhcccc
Confidence 99999999999999999753
No 26
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=4e-81 Score=796.52 Aligned_cols=501 Identities=17% Similarity=0.218 Sum_probs=402.7
Q ss_pred ChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccccc
Q psy7266 248 TSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVS 326 (1175)
Q Consensus 248 ~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~ 326 (1175)
+....|.+ +++|++.++|+.... ...+++|+|++||||+||.|||||+++.++ +|+++||+||+||+|+|++
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~------~~~~~~f~i~~~PPy~nG~lHiGHa~~~~l-kDii~Ry~rm~G~~v~~~p 76 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSD------RNNGESFTLHDGPPYANGDLHIGHALNKIL-KDFINRYQLLQGKKVHYVP 76 (974)
T ss_pred ChHHhhHHHHHHHHHCCCcccccc------ccCCCCEEEeCCCCCCCCCcchhHHHHHHH-HHHHHHHHHhcCCccccCC
Confidence 55678888 999999999976431 123467999999999999999999999998 9999999999999999999
Q ss_pred ccCCcchHHHHHHHH-------cCCCchhh-------HHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHHHHHHHH
Q psy7266 327 GTDEYGTATETKALE-------EGLTPRQI-------CDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQHLFDRV 390 (1175)
Q Consensus 327 G~D~~G~~ie~~a~~-------~g~~p~~~-------~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L 390 (1175)
||||||+|||.++++ .+++|.++ ++++.+.+++++++||++.||. ++|++|.|.+.++++|.+|
T Consensus 77 G~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l 156 (974)
T PLN02843 77 GWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQM 156 (974)
T ss_pred ccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHH
Confidence 999999999998753 23455554 4556677799999999977764 5799999999999999999
Q ss_pred HHcCCEEeceEEEeeeCCCCcccccceeccc----C--------------------------------------------
Q psy7266 391 HKAGFTSSASVEQLHCAQCDRFLADRFVEGV----C-------------------------------------------- 422 (1175)
Q Consensus 391 ~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~----c-------------------------------------------- 422 (1175)
+++|+||++.++|+|||.|+|+|||.+|+.. .
T Consensus 157 ~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~A 236 (974)
T PLN02843 157 FLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAA 236 (974)
T ss_pred HHCCCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcE
Confidence 9999999999999999999999999765410 0
Q ss_pred ----CC--------------------------------------------------------------------------
Q psy7266 423 ----PK-------------------------------------------------------------------------- 424 (1175)
Q Consensus 423 ----P~-------------------------------------------------------------------------- 424 (1175)
|.
T Consensus 237 iaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~ 316 (974)
T PLN02843 237 VAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIH 316 (974)
T ss_pred EEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEEC
Confidence 10
Q ss_pred ------------------------------ccc----------------cCCCCCcccccCCc----c------------
Q psy7266 425 ------------------------------CRY----------------EDARGDQCDGCGQL----I------------ 442 (1175)
Q Consensus 425 ------------------------------c~~----------------~d~~G~~c~~~g~~----~------------ 442 (1175)
+|. -|.+|.+.+.+|.+ +
T Consensus 317 P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L 396 (974)
T PLN02843 317 PLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEAL 396 (974)
T ss_pred CCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHH
Confidence 000 02233333322211 0
Q ss_pred ---------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeecc
Q psy7266 443 ---------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRD 513 (1175)
Q Consensus 443 ---------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~ 513 (1175)
+.+.|.+|+||||++++++|.++|||++++.+++++++.++++. .+|...++++.+|| ++++|||||||
T Consensus 397 ~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~-~~P~~~~~r~~~~i-~~~~DWcISRQ 474 (974)
T PLN02843 397 DEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVK-WIPAQGENRIRAMV-SGRSDWCISRQ 474 (974)
T ss_pred HHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccE-EEChHHHHHHHHHH-hcCcceeeeec
Confidence 12358899999999999999999999999999999999998763 34667899999999 68999999999
Q ss_pred CCCCcccCCCCC--------------------------------------------------CCce--EEecCc------
Q psy7266 514 LKWGIPVPLPGF--------------------------------------------------ENKY--SLSSSP------ 535 (1175)
Q Consensus 514 ~~WG~piP~~~~--------------------------------------------------e~~v--vWfds~------ 535 (1175)
|+||+|||+|.+ +.+| |||||+
T Consensus 475 r~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~ 554 (974)
T PLN02843 475 RTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGV 554 (974)
T ss_pred cccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHH
Confidence 999999997632 1256 999998
Q ss_pred ---cccccCCCCCCCCcceEEEEeeccccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCch
Q psy7266 536 ---SLVQFLPTATPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGN 609 (1175)
Q Consensus 536 ---~~~~~wp~~~~~~~v~~~~~~GkD~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~ 609 (1175)
....+||+| +++.|+||++ ||..+|+++.. . +..||+++++|||++ .+|+|||||+||+|+|.
T Consensus 555 ~~~~~~~~~PaD--------l~~eG~Di~rgWf~s~l~~~~~~-~--g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~ 623 (974)
T PLN02843 555 LGSREGLSYPAD--------LYLEGSDQHRGWFQSSLLTSVAT-K--GKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPR 623 (974)
T ss_pred hccccccCCCce--------eeeeeccccchHHHHHHHHHHHh-c--CCCccceEEEeccEECCCCCCcCCCCCCcCCHH
Confidence 124579998 9999999998 88999987743 3 467789999999995 58999999999999999
Q ss_pred hhhhc--------CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCC
Q psy7266 610 NAKDT--------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST-----IPEI 676 (1175)
Q Consensus 610 d~i~~--------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~-----~p~~ 676 (1175)
++++. .||+|++|||+++ ...++|++|+.+.+... .+.+++++|.+ +|+..+..+. ++..
T Consensus 624 ~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~~--~~~~~kl~n~~----rf~lgnl~~~~~~~~~~~~ 696 (974)
T PLN02843 624 LVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQM--SDIYRKLRGTL----RYLLGNLHDWKPDNAVPYE 696 (974)
T ss_pred HHHhhccccccccccChHHHHHHHHh-cccCCCceeCHHHHHHH--HHHHHHHHHHH----HHHHhCccCCCcccccCcc
Confidence 99982 2999999999997 56778999999988643 34556666644 4444443332 2223
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHH
Q psy7266 677 SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSY 754 (1175)
Q Consensus 677 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~ 754 (1175)
.+...|+|++++++.+++.+.++|++|+|+.|++.|++| .++||+||+..+||.+.+... +..+ ..+..++..++.
T Consensus 697 ~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~-~~~r-~~~qtvL~~iLe 774 (974)
T PLN02843 697 DLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTT-SFTR-RSCQTVLAAHLL 774 (974)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCC-HHHH-HHHHHHHHHHHH
Confidence 345689999999999999999999999999999999998 689999999999998765321 1111 223344567778
Q ss_pred HHHHHccchhhHHHHHHHHHcCC
Q psy7266 755 LLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 755 ~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
.+++||+|||||+||+||++|+.
T Consensus 775 ~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 775 SLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred HHHHHHhhhhhHHHHHHHHhccc
Confidence 88999999999999999999975
No 27
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-81 Score=759.62 Aligned_cols=508 Identities=19% Similarity=0.274 Sum_probs=411.7
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.++++.+.|+. +++|++.++|+.... .-..+++.|++.++|||+||.+|||||.+.+| .|++.||++|+||
T Consensus 13 ~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~----~~~~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~ 87 (933)
T COG0060 13 DFPMRANLPKKEPKILKFWEENDIYEKIRE----ERNKGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGY 87 (933)
T ss_pred CCCccCChhhcCHHHHHHHHHhhHHHHHHH----HHhCCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCC
Confidence 45668899999999 999999999854220 01247889999999999999999999999999 9999999999999
Q ss_pred CcccccccCCcchHHHHHHH-HcCCC---------------chhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKAL-EEGLT---------------PRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~-~~g~~---------------p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|.+++||||||+|||.+++ +.|+. |++++.++.+.+++++++||+..||.. .|+++.|++.
T Consensus 88 ~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~ 167 (933)
T COG0060 88 DVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEES 167 (933)
T ss_pred cCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHH
Confidence 99999999999999998876 44532 223344566888999999999888864 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc----------------------c-------C-----------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG----------------------V-------C----------- 422 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g----------------------~-------c----------- 422 (1175)
++++|.+|+++|+||++.++++||++|+|.||+.||+- + -
T Consensus 168 ~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aia 247 (933)
T COG0060 168 VWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIA 247 (933)
T ss_pred HHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeE
Confidence 99999999999999999999999999999999987640 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 423 -------------------------------------------------------------------------------- 422 (1175)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (1175)
T Consensus 248 v~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG 327 (933)
T COG0060 248 VHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327 (933)
T ss_pred eCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCcc
Confidence
Q ss_pred -----CCcccc-----------------CCCCCccccc----CCcc--------------------ccccccCCcccCCC
Q psy7266 423 -----PKCRYE-----------------DARGDQCDGC----GQLI--------------------NAIELIQPRCKQCS 456 (1175)
Q Consensus 423 -----P~c~~~-----------------d~~G~~c~~~----g~~~--------------------~~~el~~~~c~r~~ 456 (1175)
|++|.+ |.+|...+.. |.++ ...+|++||||||+
T Consensus 328 ~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~k 407 (933)
T COG0060 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTK 407 (933)
T ss_pred ceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCC
Confidence 111100 1222222211 1111 12468999999999
Q ss_pred CccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC---------
Q psy7266 457 QAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE--------- 526 (1175)
Q Consensus 457 ~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e--------- 526 (1175)
+|+++|.++|||++++++++++++.+++. .| |...++++.+|+ ++.+||||||||+||+|||+|.|+
T Consensus 408 tPlIyRAt~QWFi~v~~~r~~~l~~i~~v--~w~P~~~~~R~~~mv-e~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~ 484 (933)
T COG0060 408 TPLIYRATPQWFVSVDKLRDKMLKEINKV--NWVPDWGKNRFGNMV-ENRPDWCISRQRYWGVPIPVWYCKETGEILVIT 484 (933)
T ss_pred CeeEEeecchheeEHHHHHHHHHHHHhcc--eEEChhHHHHHHHHH-cCCCcceeeccccCCCceeEEEECCCCCeeccH
Confidence 99999999999999999999999877765 46 446789999999 799999999999999999998531
Q ss_pred -----------------------------------------Cce--EEecCc--------c-ccccCCC---CCCCCcce
Q psy7266 527 -----------------------------------------NKY--SLSSSP--------S-LVQFLPT---ATPQSKIT 551 (1175)
Q Consensus 527 -----------------------------------------~~v--vWfds~--------~-~~~~wp~---~~~~~~v~ 551 (1175)
.+| |||||+ . -+.+||. |
T Consensus 485 ~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD------- 557 (933)
T COG0060 485 EELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFAD------- 557 (933)
T ss_pred HHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcccccCccccCc-------
Confidence 245 999998 1 1234555 5
Q ss_pred EEEEeecccc--chhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhc
Q psy7266 552 LYQFMAKDNV--PFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYV 628 (1175)
Q Consensus 552 ~~~~~GkD~i--~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~ 628 (1175)
++.-|.|+. |||+.+..++++. +..|++.+++|||+ +.+|+|||||+||+|+|.+++++ ||||+||+|+++.
T Consensus 558 -~~lEGsDQ~RGWF~Ssl~~s~a~~---~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ss 632 (933)
T COG0060 558 -FYLEGSDQTRGWFYSSLLTSTALF---GRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASS 632 (933)
T ss_pred -EEEEeccccchhHHHHHHHHHHHc---CCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeec
Confidence 788899998 7988876655443 47788999999998 58899999999999999999996 9999999999995
Q ss_pred CCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy7266 629 RPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE------ISPIHEDFLLLALINRELSAYYSVLDK 702 (1175)
Q Consensus 629 ~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~------~~~~~~d~~l~~~l~~~~~~~~~~~e~ 702 (1175)
. .+.|+.|+++.+. ...+.++.++| +.+|+..+.++.-|. ..+..+|+|++++++.+++.+.++|++
T Consensus 633 d-~~~dl~~s~~il~--~~~~~~r~irN----t~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~ 705 (933)
T COG0060 633 D-YWEDLRFSDEILK--QVREVYRKIRN----TYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYEN 705 (933)
T ss_pred C-chhccccCHHHHH--HHHHHHHHHHH----HHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 5 8899999999954 34566677777 556665554443332 245678999999999999999999999
Q ss_pred ccHHHHHHHHHHHH--HHHHHHHHhcCcccccC-CChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCc
Q psy7266 703 AKLRDGIRYILNIS--RYCNQYMQTQQPWVLFK-GSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASH 779 (1175)
Q Consensus 703 ~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k-~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~ 779 (1175)
|+|+.+++.|++|+ +++|+||+..|.+.+.. .+..++ .++..++..++..++++|+||+||+||+||+.|..+.
T Consensus 706 y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~r---raa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~ 782 (933)
T COG0060 706 YDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDR---RAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER 782 (933)
T ss_pred cCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHH---HHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC
Confidence 99999999999995 99999999999988765 332333 3445566899999999999999999999999998763
No 28
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.2e-79 Score=784.46 Aligned_cols=485 Identities=17% Similarity=0.227 Sum_probs=395.7
Q ss_pred HHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccC
Q psy7266 251 EIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTD 329 (1175)
Q Consensus 251 ~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D 329 (1175)
+||++ |++|++.++|+... +++++|+|+.||||+||.|||||+++.++ +|+++||+||+|++|+|++|||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~--------~~~~kf~i~~ppPy~nG~lH~GH~~~~~~-~D~~aRy~Rm~G~~vl~p~G~d 72 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP--------DDREKFFLTMAYPYLNGVMHAGHCRTFTI-PEVSARFERMKGKNVLFPLGFH 72 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC--------CCCCceEEecCCCCCCCCcccchhhhhhH-HHHHHHHHHhcCCccCCCCccC
Confidence 58899 99999999998643 24678999999999999999999999888 9999999999999999999999
Q ss_pred CcchHHHHHHHHc---------------C---------CCchhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 330 EYGTATETKALEE---------------G---------LTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 330 ~~G~~ie~~a~~~---------------g---------~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
+||+||+..|++. + .+|.+++++|...+++++++||+++||.+ .|+||.|.++|
T Consensus 73 ~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v 152 (938)
T TIGR00395 73 VTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFI 152 (938)
T ss_pred CCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHH
Confidence 9999999887652 1 34567778999999999999999999976 69999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc---------------------------cC-------------C
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG---------------------------VC-------------P 423 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g---------------------------~c-------------P 423 (1175)
+|+|.+|+++|+||++.++++|||.|+|+|+|++++. |. |
T Consensus 153 ~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P 232 (938)
T TIGR00395 153 EWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNP 232 (938)
T ss_pred HHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECC
Confidence 9999999999999999999999999999999975520 00 1
Q ss_pred Cc-----------------------------------------------------------------------------c
Q psy7266 424 KC-----------------------------------------------------------------------------R 426 (1175)
Q Consensus 424 ~c-----------------------------------------------------------------------------~ 426 (1175)
.. +
T Consensus 233 ~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~ 312 (938)
T TIGR00395 233 TITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHA 312 (938)
T ss_pred CCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCC
Confidence 11 0
Q ss_pred ccC--------------------------------CCC-------------------------------------Ccccc
Q psy7266 427 YED--------------------------------ARG-------------------------------------DQCDG 437 (1175)
Q Consensus 427 ~~d--------------------------------~~G-------------------------------------~~c~~ 437 (1175)
..| .+| .+.+.
T Consensus 313 p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~ 392 (938)
T TIGR00395 313 PDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYN 392 (938)
T ss_pred HHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccC
Confidence 000 001 11112
Q ss_pred cCCcc----------------------ccccc-cCCcccCCCCccEEe-ecccccccch--hHHHHHHHHHHhcCCCCCc
Q psy7266 438 CGQLI----------------------NAIEL-IQPRCKQCSQAPTVK-SSTQLFLELP--KIEDKLQSWVSETSDQWSS 491 (1175)
Q Consensus 438 ~g~~~----------------------~~~el-~~~~c~r~~~~~~~~-~~~qwfl~l~--~~~~~l~~~~~~~~~~~~~ 491 (1175)
||.+. .-.++ ..++|+|||++++++ .++||||+++ +|++.++++++++. .+|+
T Consensus 393 ~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~-~~P~ 471 (938)
T TIGR00395 393 IPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMR-IIPE 471 (938)
T ss_pred CcccCCcCHHHhHHHHHHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCE-EeCH
Confidence 22221 01133 468899999999998 9999999999 59999999998863 4688
Q ss_pred hHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC---C----CC-------------------------ce--EEecCc--
Q psy7266 492 NARVICKAWLKDGLKPRCITRDLKWGIPVPLPG---F----EN-------------------------KY--SLSSSP-- 535 (1175)
Q Consensus 492 ~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~---~----e~-------------------------~v--vWfds~-- 535 (1175)
+.++.+.+|| ++|+|||||||++||||||++. + +. +| +||+..
T Consensus 472 ~~~~~~~~~l-~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~ 550 (938)
T TIGR00395 472 EVKNAFEGKI-DWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGD 550 (938)
T ss_pred HHHHHHHHHH-hhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCC
Confidence 8999999999 5899999999999999999621 1 11 12 344321
Q ss_pred ----------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCC-cccCeEEEeeceeecCCCcc
Q psy7266 536 ----------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ-YTKVNHIMATEYLNYEDGKF 598 (1175)
Q Consensus 536 ----------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~-~~~p~~i~~~g~l~~~G~KM 598 (1175)
+|++|||.| +|++|+||++||+++|. +++.+..+ ..+|++|++||||+.+|+||
T Consensus 551 ~~~t~~~~~~~~~~~~ef~~~yP~D--------~~~~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~~G~KM 621 (938)
T TIGR00395 551 VKNTNIPLPAIQKLRREFEYWYPLD--------WRISGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVMLEGKKM 621 (938)
T ss_pred hhhcCCCHHHHHHHHHHHhhcCCce--------EEEEeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEeCCccc
Confidence 467899998 99999999999999994 44444333 34689999999999999999
Q ss_pred cccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy7266 599 SKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISP 678 (1175)
Q Consensus 599 SKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~ 678 (1175)
|||+||+|+|.++++. ||+|++||||++.++.++|++|+++.+.+..|. +++++|++.++..+. +...+ ...
T Consensus 622 SKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~----~~~~~-~~~ 693 (938)
T TIGR00395 622 SKSKGNVLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKES----NLETG-EET 693 (938)
T ss_pred cCcCCCCCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhc----ccCCC-ccC
Confidence 9999999999999996 999999999999889999999999999877554 678888888765432 11111 124
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7266 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGI-RYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLS 757 (1175)
Q Consensus 679 ~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~-~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~ 757 (1175)
+..|+||+++++.+++.+.++|++|+|+.|+ ..+++|...+|+|++..++ +.. .++.++++.++
T Consensus 694 ~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~------------~~~---~~l~~~l~~~~ 758 (938)
T TIGR00395 694 SFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGGV------------NHK---DVLARYLETWI 758 (938)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcc------------hHH---HHHHHHHHHHH
Confidence 5689999999999999999999999999999 6789999999999885332 111 24679999999
Q ss_pred HHccchhhHHHHHHHHHcCCC
Q psy7266 758 LLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 758 ~lL~PfmP~~se~i~~~L~~~ 778 (1175)
+||+|||||+||+||++||.+
T Consensus 759 ~LLaP~~P~~aEeiw~~Lg~~ 779 (938)
T TIGR00395 759 KLLAPFAPHFAEEMWEEVGNE 779 (938)
T ss_pred HHhcCcccHHHHHHHHHcCCC
Confidence 999999999999999999854
No 29
>KOG0432|consensus
Probab=100.00 E-value=1.2e-78 Score=707.84 Aligned_cols=513 Identities=19% Similarity=0.239 Sum_probs=420.4
Q ss_pred ccccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHH
Q psy7266 238 DDLSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR 316 (1175)
Q Consensus 238 ~~~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r 316 (1175)
+....++..|+|..+|.. |.+|+..++|++... | .....|.|+.||||++|.||||||.+.+| .|+++||+|
T Consensus 37 ~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-----~-~~~~~f~i~~PPPNVTG~LHiGHALt~ai-qD~i~R~~r 109 (995)
T KOG0432|consen 37 DLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYG-----P-NPGGVFVIPLPPPNVTGSLHIGHALTVAI-QDALARYNR 109 (995)
T ss_pred ccCCcccccCCccchHHHHHHHHHHcCCCCcccC-----C-CCCCcceeecCCCCcccccchhHHHHHHH-HHHHHHHHH
Confidence 445667889999999999 999999999976542 2 24678999999999999999999999999 999999999
Q ss_pred HcCCCcccccccCCcchHHHHHHH-----HcCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCH
Q psy7266 317 LVNRNTLYVSGTDEYGTATETKAL-----EEGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTP 377 (1175)
Q Consensus 317 ~~G~~v~~~~G~D~~G~~ie~~a~-----~~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~ 377 (1175)
|+||.|+|++|+||.|++|+..++ +.|.+..+ +.++|...|.+++++||.++||.+ +|+|+
T Consensus 110 m~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~ 189 (995)
T KOG0432|consen 110 MHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDP 189 (995)
T ss_pred hcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCH
Confidence 999999999999999999998765 33455443 445677889999999999999976 79999
Q ss_pred HHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec--------------------------------ccC---
Q psy7266 378 QQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE--------------------------------GVC--- 422 (1175)
Q Consensus 378 ~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~--------------------------------g~c--- 422 (1175)
...+.|.+.|.+|+++|+||++.+.||||+..++.+||.+|+ |.|
T Consensus 190 ~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i 269 (995)
T KOG0432|consen 190 KLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEI 269 (995)
T ss_pred HHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeE
Confidence 999999999999999999999999999999999999998775 000
Q ss_pred -----------------------------------CCcc-----------------------------------------
Q psy7266 423 -----------------------------------PKCR----------------------------------------- 426 (1175)
Q Consensus 423 -----------------------------------P~c~----------------------------------------- 426 (1175)
|.++
T Consensus 270 ~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~ 349 (995)
T KOG0432|consen 270 VVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEF 349 (995)
T ss_pred EEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCc
Confidence 1111
Q ss_pred --ccCCCCCcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHH
Q psy7266 427 --YEDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQS 480 (1175)
Q Consensus 427 --~~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~ 480 (1175)
..+.+|.+.+.||.+. ..+++..|+|.|+|..+|++..+|||+++.++..+..+
T Consensus 350 ~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~ 429 (995)
T KOG0432|consen 350 INIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALK 429 (995)
T ss_pred eeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHH
Confidence 0146777777888431 24567899999999999999999999999999999999
Q ss_pred HHHhcCCC-CCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC-----------------------------------
Q psy7266 481 WVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG----------------------------------- 524 (1175)
Q Consensus 481 ~~~~~~~~-~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~----------------------------------- 524 (1175)
.++++... .|+..+..+.+|+ ++++|||||||+||||.||.|.
T Consensus 430 av~sG~L~i~P~~~~k~w~~W~-~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~ 508 (995)
T KOG0432|consen 430 AVESGKLEILPEFHEKEWYRWL-ENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKE 508 (995)
T ss_pred HHhcCCeEECchHHHHHHHHHH-hhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCccc
Confidence 99976543 5677889999999 7999999999999999999852
Q ss_pred ----CCCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-CcccCe
Q psy7266 525 ----FENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-QYTKVN 583 (1175)
Q Consensus 525 ----~e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~~~~p~ 583 (1175)
.+.|| |||+|+ ++..|||.+ +.-.|.||++||..-. ++++..+ +..||+
T Consensus 509 ~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~s--------llETG~DILfFWVaRM--vmLg~kLtG~lPF~ 578 (995)
T KOG0432|consen 509 FTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLS--------LLETGHDILFFWVARM--VMLGLKLTGELPFK 578 (995)
T ss_pred ceeecCccHHHhhhhcccccchhcCCccccccHHhcCCch--------hhhcCchHHHHHHHHH--HHhhhhhcCCCCch
Confidence 14578 999997 355677765 4557999999976543 2223222 466789
Q ss_pred EEEeecee-ecCCCcccccCCCccCchhhhh------------------------------c------CCCchhHHHHHH
Q psy7266 584 HIMATEYL-NYEDGKFSKSRGTGVFGNNAKD------------------------------T------GLPADIFRFYLL 626 (1175)
Q Consensus 584 ~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~------------------------------~------~~gaDalR~~ll 626 (1175)
.|+.||+| +.+|+|||||+||||+|.|+|+ . .+|.|||||.||
T Consensus 579 ~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~ 658 (995)
T KOG0432|consen 579 EVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALC 658 (995)
T ss_pred heeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHH
Confidence 99999999 7999999999999999999987 1 259999999999
Q ss_pred hcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----CC-C-hhhHHHHHHHHHHHHHHHHHH
Q psy7266 627 YVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI----SP-I-HEDFLLLALINRELSAYYSVL 700 (1175)
Q Consensus 627 ~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~----~~-~-~~d~~l~~~l~~~~~~~~~~~ 700 (1175)
+....++|+++|..++.. ++.|+|++||....++..+.+ +.+|.. .. + ..|.||+++|+..++.+.+.|
T Consensus 659 s~~~~~~dInLDv~rv~g--~r~FcNKlWNa~rF~l~~lg~---~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~ 733 (995)
T KOG0432|consen 659 SYTTQGRDINLDVLRVEG--YRHFCNKLWNATRFALQRLGE---NFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESL 733 (995)
T ss_pred HccccCccccccHHHHhh--HHHHHHHHHHHHHHHHHhccc---CCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999874 467888888855444433222 234432 11 1 289999999999999999999
Q ss_pred HhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 701 DKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 701 e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
+.|+|+.|...+++| .++|+.|++..||-. .++. ..+......++..++...++||+|||||+||+||++|..
T Consensus 734 ~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l--~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~ 808 (995)
T KOG0432|consen 734 EARNFHLATSALYAFWLYDLCDVYLEATKPLL--WGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPR 808 (995)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHh--cCCc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhccc
Confidence 999999999999999 599999999999943 2222 223344455668889999999999999999999999854
No 30
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=8.8e-75 Score=730.10 Aligned_cols=460 Identities=18% Similarity=0.298 Sum_probs=380.9
Q ss_pred CChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccc
Q psy7266 247 VTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYV 325 (1175)
Q Consensus 247 ~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~ 325 (1175)
|++.++|++ +++|++.++|+... ..++++|||+++||||||.|||||+++.++ +|+++||+||+||+|+|+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~-------~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~-~Dvi~Ry~rm~G~~V~~~ 72 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD-------DSNKPKYYILDMFPYPSGALHMGHVRNYTI-TDVLSRYYRMKGYNVLHP 72 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC-------CCCCCCEEEEcCCCCCCCccccchhHHHHH-HHHHHHHHHhcCCceecc
Confidence 789999999 99999999997643 235778999999999999999999999887 999999999999999999
Q ss_pred cccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEE
Q psy7266 326 SGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQ 403 (1175)
Q Consensus 326 ~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~ 403 (1175)
+|||+||+|||.+|.+.|++|.++++++.+.+++++++||+++|| +++|++|.|.+.+|++|.+|+++|+||++.+++
T Consensus 73 ~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v 152 (842)
T TIGR00396 73 MGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADV 152 (842)
T ss_pred CCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccce
Confidence 999999999999999999999999999999999999999999998 458999999999999999999999999999999
Q ss_pred eeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHH
Q psy7266 404 LHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVS 483 (1175)
Q Consensus 404 ~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~ 483 (1175)
+|||.|+|+|++.+|+ .+++|+|||.+++.+..+||||++++|+++|.++++
T Consensus 153 ~wcp~~~t~La~~ev~----------------------------~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~ 204 (842)
T TIGR00396 153 NWCPNDGTVLANEQVD----------------------------SDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLE 204 (842)
T ss_pred EEeCCCCCCccHHHHh----------------------------hcCccccCCCcceEeecceeEEehhhhHHHHHHHHh
Confidence 9999999999999983 124689999999999999999999999998887655
Q ss_pred hcCCCCCchHHHH-------------------------------------------------------------------
Q psy7266 484 ETSDQWSSNARVI------------------------------------------------------------------- 496 (1175)
Q Consensus 484 ~~~~~~~~~~~~~------------------------------------------------------------------- 496 (1175)
... .||.+++.+
T Consensus 205 ~~~-~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~ 283 (842)
T TIGR00396 205 ELD-HWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKIL 283 (842)
T ss_pred hhc-cccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHh
Confidence 442 132211100
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 497 -------------------------------------------------------------------------------- 496 (1175)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (1175)
T Consensus 284 ~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~ 363 (842)
T TIGR00396 284 QKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKN 363 (842)
T ss_pred ccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccc
Confidence
Q ss_pred -----------------------------HHHHhh----------cCCCcEeeeccCCCCcccCCCCCC-----------
Q psy7266 497 -----------------------------CKAWLK----------DGLKPRCITRDLKWGIPVPLPGFE----------- 526 (1175)
Q Consensus 497 -----------------------------~~~wl~----------~~l~dw~ISR~~~WG~piP~~~~e----------- 526 (1175)
+..+|+ -+|+||||||||+||+|||+|+|+
T Consensus 364 ~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~ 443 (842)
T TIGR00396 364 LKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEED 443 (842)
T ss_pred cccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchh
Confidence 011111 157899999999999999997541
Q ss_pred ----------------------------------------Cce--EEecCc-------------------cccccCCCCC
Q psy7266 527 ----------------------------------------NKY--SLSSSP-------------------SLVQFLPTAT 545 (1175)
Q Consensus 527 ----------------------------------------~~v--vWfds~-------------------~~~~~wp~~~ 545 (1175)
.+| |||||+ .+++|+|.|
T Consensus 444 lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD- 522 (842)
T TIGR00396 444 LPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVD- 522 (842)
T ss_pred cchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCc-
Confidence 134 999987 234577887
Q ss_pred CCCcceEEEEeeccccchhHhH---HHHHHHHhCC--CcccCeEEEeeceee-----cCCC-------------------
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIM---FPATLVAAGD--QYTKVNHIMATEYLN-----YEDG------------------- 596 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~---~pa~l~~~~~--~~~~p~~i~~~g~l~-----~~G~------------------- 596 (1175)
+++.|.||+..|.+| |...|...+. +..|++.+++||||+ .+|+
T Consensus 523 -------~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 595 (842)
T TIGR00396 523 -------LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGG 595 (842)
T ss_pred -------EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCC
Confidence 899999998776554 6666665442 457789999999996 4888
Q ss_pred --------cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q psy7266 597 --------KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKN 668 (1175)
Q Consensus 597 --------KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~ 668 (1175)
|||||+||+|+|.++++. ||+|++|||+++.++..+|++|+++.+... ..+++.++|++.++...+..
T Consensus 596 ~~~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~- 671 (842)
T TIGR00396 596 ELVVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG- 671 (842)
T ss_pred cccccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-
Confidence 999999999999999996 999999999998888889999999998653 45677888877654333211
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHH
Q psy7266 669 YGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAK-LRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLG 747 (1175)
Q Consensus 669 ~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~-~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~ 747 (1175)
+. .++...++..|+||+++++.+++.+.++|++|+ |+.|++.+|+|.+....|.. + .
T Consensus 672 ~~-~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~-------------~--------~ 729 (842)
T TIGR00396 672 KT-YLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKK-------------D--------A 729 (842)
T ss_pred cc-cCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh-------------H--------H
Confidence 11 112123567899999999999999999999988 99999999999865443210 0 1
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 748 ILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 748 ~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
++.+++..+++||+|||||+||+||+.|+.
T Consensus 730 ~l~~~l~~ll~lLaPf~PhiaEElW~~l~~ 759 (842)
T TIGR00396 730 LYLEYLKGFLTVLSPFAPHLAEELWEKLGS 759 (842)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhCC
Confidence 357889999999999999999999999974
No 31
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.5e-74 Score=722.30 Aligned_cols=456 Identities=19% Similarity=0.340 Sum_probs=376.8
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|++.++|++ +++|++.++|+... . .+++|||+++||||||.|||||+++.++ +|+++||+||+|++
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~-------~-~~~~~~i~~~pPy~nG~lHiGH~~~~~~-~Dii~Ry~rm~G~~ 71 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTE-------D-SSKKYYVLDMFPYPSGGLHMGHVRNYTI-GDVIARYKRMQGYN 71 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCc-------c-CCCCEEEEccCCCCCCCcchhhhHHHHH-HHHHHHHHHhcCCc
Confidence 3568999999999 99999999997643 1 2347999999999999999999999877 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 322 TLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|+|++|||+||+|||.+|++.|++|.++++++.+.|++++++||+++|| +++|++|.|.+.+|++|.+|+++|+||++
T Consensus 72 V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~ 151 (805)
T PRK00390 72 VLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRK 151 (805)
T ss_pred ccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999999999999999999999999999999998 45899999999999999999999999999
Q ss_pred eEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHH
Q psy7266 400 SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479 (1175)
Q Consensus 400 ~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~ 479 (1175)
.++++||+.|+|+|++.+|+ +++|++||.+++.+..+||||++++++++|.
T Consensus 152 ~~~v~wcp~~~t~La~~ev~-----------------------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~ 202 (805)
T PRK00390 152 ESPVNWCPVDGTVLANEQVI-----------------------------DGRCWRCGAPVEKKELRQWFLKITDYADELL 202 (805)
T ss_pred cCEEEecCCcCCCCCHHHhh-----------------------------CCeecccCCeeEEEecceeeEecchhHHHHH
Confidence 99999999999999999985 3458999999999999999999999998888
Q ss_pred HHHHhcCCCCCchHHH----------------------------------------------------------------
Q psy7266 480 SWVSETSDQWSSNARV---------------------------------------------------------------- 495 (1175)
Q Consensus 480 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 495 (1175)
++++... .||+.++.
T Consensus 203 ~~l~~~~-~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~ 281 (805)
T PRK00390 203 DDLDKLE-DWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFI 281 (805)
T ss_pred HHHHhhc-cCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHH
Confidence 7754421 11111110
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 496 -------------------------------------------------------------------------------- 495 (1175)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (1175)
T Consensus 282 ~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~ 361 (805)
T PRK00390 282 EECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEP 361 (805)
T ss_pred HHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCC
Confidence
Q ss_pred ----------------------------------HHHHHhh----------cCCCcEeeeccCCCCcccCCCCC------
Q psy7266 496 ----------------------------------ICKAWLK----------DGLKPRCITRDLKWGIPVPLPGF------ 525 (1175)
Q Consensus 496 ----------------------------------~~~~wl~----------~~l~dw~ISR~~~WG~piP~~~~------ 525 (1175)
.+...|+ -+++||||||||+||+|||+|+|
T Consensus 362 ~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~ 441 (805)
T PRK00390 362 GDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIV 441 (805)
T ss_pred CCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCce
Confidence 0111111 13689999999999999997754
Q ss_pred --------------------------------------------CCce--EEecCc-------------------ccccc
Q psy7266 526 --------------------------------------------ENKY--SLSSSP-------------------SLVQF 540 (1175)
Q Consensus 526 --------------------------------------------e~~v--vWfds~-------------------~~~~~ 540 (1175)
+.+| |||||+ .+++|
T Consensus 442 ~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~ 521 (805)
T PRK00390 442 PVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYW 521 (805)
T ss_pred eCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCc
Confidence 1245 999998 13467
Q ss_pred CCCCCCCCcceEEEEeeccccchhHh---HHHHHHHHhCC--CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcC
Q psy7266 541 LPTATPQSKITLYQFMAKDNVPFHSI---MFPATLVAAGD--QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTG 615 (1175)
Q Consensus 541 wp~~~~~~~v~~~~~~GkD~i~fh~~---~~pa~l~~~~~--~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~ 615 (1175)
||.| +++.|.||+..|.. +|+..|...+. +..|++.+++|||| |||||+||+|+|.++++.
T Consensus 522 ~P~D--------ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~~- 587 (805)
T PRK00390 522 LPVD--------QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIEK- 587 (805)
T ss_pred CCCc--------EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE-----EeCCCCCCCCCHHHHHHH-
Confidence 8887 89999998866543 45666665542 45677999999999 999999999999999996
Q ss_pred CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHH
Q psy7266 616 LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSA 695 (1175)
Q Consensus 616 ~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~ 695 (1175)
||+|++|||+++.++.++|++|+++.+... ..++++++|++.. ....... . .......|+|++++++.+++.
T Consensus 588 ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--~~~l~kl~~~~~~----~~~~~~~-~-~~~~~~~D~~il~~l~~~i~~ 659 (805)
T PRK00390 588 YGADTARLFEMFAGPPEKDLEWSDSGVEGA--YRFLQRVWRLVVD----AKGEAGA-L-DVAALSEDKELRRKLHKTIKK 659 (805)
T ss_pred cChHHHHHHHHhcCCccCCcccCHHHHHHH--HHHHHHHHHHHHH----hhhcccc-c-CcccChhhHHHHHHHHHHHHH
Confidence 999999999999889999999999988753 3456666665544 1111111 1 122346899999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 696 YYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 696 ~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+.++|++|+|+.|++.|++|.+..+.|++ .....++..+++.+++||+|||||+||+||+.|
T Consensus 660 v~~~~e~~~f~~ai~~l~~f~n~lsk~~~------------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L 721 (805)
T PRK00390 660 VTEDIERLRFNTAIAALMELVNALYKAED------------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKL 721 (805)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 99999999999999999999887777761 012234578999999999999999999999999
Q ss_pred CC
Q psy7266 776 GA 777 (1175)
Q Consensus 776 ~~ 777 (1175)
+.
T Consensus 722 ~~ 723 (805)
T PRK00390 722 GH 723 (805)
T ss_pred CC
Confidence 74
No 32
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.6e-74 Score=723.36 Aligned_cols=461 Identities=19% Similarity=0.331 Sum_probs=373.3
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCC-CCCchhhhhhHHhHHHHHHHHH
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNV-PHLGNIIGCVLSADVFSRFCRL 317 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~-lHiGH~~~~~l~~D~~aR~~r~ 317 (1175)
...+++.|++.+||.+ |++|++.++|+.... ...++++|+|+++||||||. |||||++++++ +|+++||+||
T Consensus 73 ~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~-----~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~-~DviaRy~Rm 146 (963)
T PLN02563 73 TPAAKRAYPFHEIEPKWQRYWEENRTFRTPDD-----VDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTA-TDILARYKRM 146 (963)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCcccccc-----ccCCCCCEEEEeCCCCCCCcccchhhHHHHHH-HHHHHHHHHh
Confidence 3467789999999999 999999999975321 12356789999999999996 99999999887 9999999999
Q ss_pred cCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCC
Q psy7266 318 VNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGF 395 (1175)
Q Consensus 318 ~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~ 395 (1175)
+||+|+|++|||+||+|||.+|.+.|++|.++++++++.|++++++||+++|| +++|++|.|.+.+|++|.+|+++|+
T Consensus 147 ~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~Gl 226 (963)
T PLN02563 147 QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGL 226 (963)
T ss_pred cCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999998 4579999999999999999999999
Q ss_pred EEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHH
Q psy7266 396 TSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIE 475 (1175)
Q Consensus 396 iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~ 475 (1175)
||++.++++|||.|+|+|++.+|+ +++|+|||.+++.+...||||+++.|+
T Consensus 227 iY~~~~~v~wcp~~~T~La~~Ev~-----------------------------~~~~~~~~~~~~~~~~~q~f~~it~ya 277 (963)
T PLN02563 227 AYQAEVPVNWCPALGTVLANEEVV-----------------------------DGLSERGGHPVIRKPMRQWMLKITAYA 277 (963)
T ss_pred EEeeeeeeeecCCcCCCCCHHHhh-----------------------------cCCCcCCCCceEEEecceeEEecchhH
Confidence 999999999999999999998874 567999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHH-----------------------------------------------------------
Q psy7266 476 DKLQSWVSETSDQWSSNARVI----------------------------------------------------------- 496 (1175)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 496 (1175)
++|+++++... ||++++.+
T Consensus 278 ~~L~~~l~~~~--wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~ 355 (963)
T PLN02563 278 DRLLEDLDDLD--WPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTT 355 (963)
T ss_pred HHHHHhhhhcC--CCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhc
Confidence 99998864221 11111100
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 497 -------------------------------------------------------------------------------- 496 (1175)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (1175)
T Consensus 356 ~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k 435 (963)
T PLN02563 356 AEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQK 435 (963)
T ss_pred ccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------HHHHhhc----------CCCcEeeeccCCC
Q psy7266 497 --------------------------------------------------CKAWLKD----------GLKPRCITRDLKW 516 (1175)
Q Consensus 497 --------------------------------------------------~~~wl~~----------~l~dw~ISR~~~W 516 (1175)
+..||.+ +|+||||||||+|
T Consensus 436 ~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyW 515 (963)
T PLN02563 436 FDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYW 515 (963)
T ss_pred cCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeeccc
Confidence 0001100 1789999999999
Q ss_pred CcccCCCCCC------------------------------------------------------Cce--EEecCc----c
Q psy7266 517 GIPVPLPGFE------------------------------------------------------NKY--SLSSSP----S 536 (1175)
Q Consensus 517 G~piP~~~~e------------------------------------------------------~~v--vWfds~----~ 536 (1175)
|+|||+++|+ .+| |||+|+ .
T Consensus 516 G~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r 595 (963)
T PLN02563 516 GEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLR 595 (963)
T ss_pred CCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHH
Confidence 9999997541 134 888887 0
Q ss_pred ---------------ccccCCCCCCCCcceEEEEeeccccchhHh---HHHHHHHHhCC--CcccCeEEEeeceee----
Q psy7266 537 ---------------LVQFLPTATPQSKITLYQFMAKDNVPFHSI---MFPATLVAAGD--QYTKVNHIMATEYLN---- 592 (1175)
Q Consensus 537 ---------------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~---~~pa~l~~~~~--~~~~p~~i~~~g~l~---- 592 (1175)
..+|+|.| +++.|.||.-.|.+ +|...++..|. ...|++.+++||||+
T Consensus 596 ~~~p~~~~~~~~~~~~~~w~PvD--------~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~ 667 (963)
T PLN02563 596 FMDPKNSNALVDKEKEKYWMPVD--------LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVE 667 (963)
T ss_pred HhCCCccccccCHHHHhCcCCCc--------EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCcc
Confidence 12577887 89999999766633 45555554442 357889999999996
Q ss_pred ------cCCC---------------------------------------------cccccCCCccCchhhhhcCCCchhH
Q psy7266 593 ------YEDG---------------------------------------------KFSKSRGTGVFGNNAKDTGLPADIF 621 (1175)
Q Consensus 593 ------~~G~---------------------------------------------KMSKS~GN~v~~~d~i~~~~gaDal 621 (1175)
.+|+ |||||+||||+|.++|+. ||||++
T Consensus 668 ~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~k-YGADaL 746 (963)
T PLN02563 668 YTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSE-YGADSL 746 (963)
T ss_pred ccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHH-cCcHHH
Confidence 4566 999999999999999996 999999
Q ss_pred HHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh--cCCCCCC---CCCChhhHHHHHHHHHHHHHH
Q psy7266 622 RFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKN--YGSTIPE---ISPIHEDFLLLALINRELSAY 696 (1175)
Q Consensus 622 R~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~--~~~~~p~---~~~~~~d~~l~~~l~~~~~~~ 696 (1175)
|||+++.++..+|..|+.+.+.. ..+|++|+.+++..+ .++.... ......|.|++++++.+++.+
T Consensus 747 Rl~ll~~ap~~dd~~w~~~~V~g---------~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkV 817 (963)
T PLN02563 747 RLYEMFMGPLRDSKTWSTSGVEG---------VHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKV 817 (963)
T ss_pred HHHHHhCCCcccccccCHHHHHH---------HHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999887653 344444444444332 0111110 011246899999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcC
Q psy7266 697 YSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776 (1175)
Q Consensus 697 ~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~ 776 (1175)
.++|++|+|+.|++.||+|.+..+. |. . ...+++..+++||+|||||+||+||++|+
T Consensus 818 te~~e~y~FntAi~~lmef~n~l~~-------~~-------~---------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg 874 (963)
T PLN02563 818 TEEIESTRFNTAISAMMEFTNAAYK-------WD-------K---------VPREAIEPFVLLLSPYAPHLAEELWFRLG 874 (963)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhC-------ch-------H---------HHHHHHHHHHHHHHhhhhhHHHHHHHHcC
Confidence 9999999999999999999765431 20 0 12578888999999999999999999998
Q ss_pred CC
Q psy7266 777 AS 778 (1175)
Q Consensus 777 ~~ 778 (1175)
.+
T Consensus 875 ~~ 876 (963)
T PLN02563 875 HS 876 (963)
T ss_pred CC
Confidence 53
No 33
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.8e-73 Score=728.65 Aligned_cols=501 Identities=16% Similarity=0.170 Sum_probs=377.5
Q ss_pred cccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcC
Q psy7266 241 SSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319 (1175)
Q Consensus 241 ~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G 319 (1175)
.+++.++++.++|.+ |++|++.++|+...... ...++++|+|+.||||+||.|||||+++.++ +|+++||+||+|
T Consensus 7 ~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~---~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~-~D~i~Rykrm~G 82 (1084)
T PLN02959 7 KSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDE---PPKPGEKFFGNFPYPYMNGLLHLGHAFSLSK-LEFAAAYHRLRG 82 (1084)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCcccCcccc---cCCCCCcEEEeCCCCCCCCCcchhhHHHHHH-HHHHHHHHHcCC
Confidence 456678999999999 99999999998754210 1123478999999999999999999999998 999999999999
Q ss_pred CCcccccccCCcchHHHHHHHH-------cCCCc----------------------------------------------
Q psy7266 320 RNTLYVSGTDEYGTATETKALE-------EGLTP---------------------------------------------- 346 (1175)
Q Consensus 320 ~~v~~~~G~D~~G~~ie~~a~~-------~g~~p---------------------------------------------- 346 (1175)
|+|+|++||||||+||+..|++ .|+.+
T Consensus 83 ~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~ 162 (1084)
T PLN02959 83 ANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKY 162 (1084)
T ss_pred CccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchH
Confidence 9999999999999999999754 24321
Q ss_pred ---------------------hhhHHHHHHHHHHHHhhccccccccC--CCCC--HHHHHHHHHHHHHHHHcCCEEeceE
Q psy7266 347 ---------------------RQICDKYFAIHREVYEWFEIDFDYFG--RTST--PQQTEIVQHLFDRVHKAGFTSSASV 401 (1175)
Q Consensus 347 ---------------------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~ 401 (1175)
..+++.|...+++++++||++.||.+ .|+| |.|..+|+|+|.+|+++|+||++.+
T Consensus 163 ~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~r 242 (1084)
T PLN02959 163 QWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKR 242 (1084)
T ss_pred HHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCe
Confidence 11333344667899999999999976 5888 9999999999999999999999999
Q ss_pred EEeeeCCCCcccccceec-----------------------------cc-------------------C---CC------
Q psy7266 402 EQLHCAQCDRFLADRFVE-----------------------------GV-------------------C---PK------ 424 (1175)
Q Consensus 402 ~~~~c~~~~~~l~d~~V~-----------------------------g~-------------------c---P~------ 424 (1175)
+++|||.|+|+|+|++++ +. | |.
T Consensus 243 pv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~ 322 (1084)
T PLN02959 243 YTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAY 322 (1084)
T ss_pred eeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEE
Confidence 999999999999996321 10 0 10
Q ss_pred -------------------c-------------------------------ccc--------------------------
Q psy7266 425 -------------------C-------------------------------RYE-------------------------- 428 (1175)
Q Consensus 425 -------------------c-------------------------------~~~-------------------------- 428 (1175)
| +++
T Consensus 323 ~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~ 402 (1084)
T PLN02959 323 EINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDS 402 (1084)
T ss_pred EecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCC
Confidence 0 000
Q ss_pred --C---------------CCCC--------------cccc----------------------------------------
Q psy7266 429 --D---------------ARGD--------------QCDG---------------------------------------- 437 (1175)
Q Consensus 429 --d---------------~~G~--------------~c~~---------------------------------------- 437 (1175)
| .+|. ..+.
T Consensus 403 pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~ 482 (1084)
T PLN02959 403 PDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGT 482 (1084)
T ss_pred HHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccc
Confidence 0 0111 0111
Q ss_pred --cCCcc-----c-----------------cccccCCcccCCCCccEEeecccccccch--hHHHHHHHHHHhcCCCCCc
Q psy7266 438 --CGQLI-----N-----------------AIELIQPRCKQCSQAPTVKSSTQLFLELP--KIEDKLQSWVSETSDQWSS 491 (1175)
Q Consensus 438 --~g~~~-----~-----------------~~el~~~~c~r~~~~~~~~~~~qwfl~l~--~~~~~l~~~~~~~~~~~~~ 491 (1175)
+|.+. + -.+-..|+|+|||++++++.++|||++++ .+++.+++.+++++ .+|+
T Consensus 483 m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~-~~P~ 561 (1084)
T PLN02959 483 MLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMN-LYSD 561 (1084)
T ss_pred ccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccE-EECH
Confidence 11110 0 01223579999999999999999999998 79999999998763 3577
Q ss_pred hHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC----------------C------------------------CCce--
Q psy7266 492 NARVICKAWLKDGLKPRCITRDLKWGIPVPLPG----------------F------------------------ENKY-- 529 (1175)
Q Consensus 492 ~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~----------------~------------------------e~~v-- 529 (1175)
.+++.+.+|| ++++||||||||+||||||++. + ..+|
T Consensus 562 ~~~~~~~~wl-~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D 640 (1084)
T PLN02959 562 ETRHGFEHTL-GWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWD 640 (1084)
T ss_pred HHHHHHHHHH-hCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCcccee
Confidence 8999999999 7999999999999999999410 0 1346
Q ss_pred EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee
Q psy7266 530 SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL 591 (1175)
Q Consensus 530 vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l 591 (1175)
+||+|+ +|++|||.| +++.|+||++||..+...+..+.....++|+.+++||||
T Consensus 641 ~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~D--------l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V 712 (1084)
T PLN02959 641 FVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFD--------LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHL 712 (1084)
T ss_pred EeecCCCcccccCCCHHHHhhhhHHHHhhCCCe--------EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEE
Confidence 999986 245688988 899999999999765432222222234667899999999
Q ss_pred ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7266 592 NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS 671 (1175)
Q Consensus 592 ~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~ 671 (1175)
+.+|+|||||+||+|+|.++++. ||+|++||||++.++..+|.+|+++.+... ...+.|.+..+..++... ..
T Consensus 713 ~~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~~-~~ 785 (1084)
T PLN02959 713 MLNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAA-----ILRLTKEIAWMEEVLAAE-SS 785 (1084)
T ss_pred ecCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhhh-cc
Confidence 99999999999999999999996 999999999999888889999998865321 222333221111111100 01
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHH
Q psy7266 672 TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILC 750 (1175)
Q Consensus 672 ~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~ 750 (1175)
..+...+...|+||+++++.+++.+.++|++|+|+.|++.. |+|...-++|...+ .. .. ....++.
T Consensus 786 ~~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr~~~------~~--~~-----~~~~~L~ 852 (1084)
T PLN02959 786 LRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYRLSC------GS--GG-----MNRDLVW 852 (1084)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHhhcc------cc--ch-----HHHHHHH
Confidence 11112246789999999999999999999999999999974 43433333442211 10 11 1234568
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 751 QVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 751 ~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
.++..+++||+|||||+||+||+.|
T Consensus 853 ~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 853 RFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 8999999999999999999999999
No 34
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-71 Score=674.56 Aligned_cols=461 Identities=19% Similarity=0.346 Sum_probs=388.5
Q ss_pred CCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCC-CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 244 SKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNE-NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 244 ~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~-~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+..|++.+||++ |++|++.+.|+...+ .++ ++|||+.+.|||||.||+||.|++++ +|+++||+||+|||
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d-------~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti-~Dv~aRykRm~GyN 73 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADED-------SDKPEKFYVLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYN 73 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCCC-------CCCCCceEEEeCCCCCCCCcccCccccccH-HHHHHHHHHhcCCe
Confidence 467999999999 999999999987542 233 69999999999999999999999998 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 322 TLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|+|++|||.+|+|++..|.+.|.+|..+++++.+.++++++.||.++||.+ .|+||+|.+++||+|.+|+++|+||++
T Consensus 74 VL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~ 153 (814)
T COG0495 74 VLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRK 153 (814)
T ss_pred ecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEec
Confidence 999999999999999999999999999999999999999999999999987 489999999999999999999999999
Q ss_pred eEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHH
Q psy7266 400 SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479 (1175)
Q Consensus 400 ~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~ 479 (1175)
+.+|+|||.|+|+|+|++|. +..|||||.+++.+...||||+++++.+.|+
T Consensus 154 ~~~VnwcP~d~tvlaneqv~-----------------------------~g~~~r~~~~V~~kel~qw~~kit~yae~ll 204 (814)
T COG0495 154 EAPVNWCPVDGTVLANEQVI-----------------------------DGGCWRCGEPVEIKELTQWFFKITDYADELL 204 (814)
T ss_pred cccceeCCCcCCccccceee-----------------------------cCCcccCCCceeEeeeEEEEEEechhHHHHH
Confidence 99999999999999999985 3458999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhh---------------------------------------------------------
Q psy7266 480 SWVSETSDQWSSNARVICKAWLK--------------------------------------------------------- 502 (1175)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~wl~--------------------------------------------------------- 502 (1175)
+-+......||..++.++++|+.
T Consensus 205 ~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~ 284 (814)
T COG0495 205 DDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLV 284 (814)
T ss_pred hhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhH
Confidence 88887754599998888876621
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 503 -------------------------------------------------------------------------------- 502 (1175)
Q Consensus 503 -------------------------------------------------------------------------------- 502 (1175)
T Consensus 285 a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~ 364 (814)
T COG0495 285 AEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKK 364 (814)
T ss_pred HHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEE
Confidence
Q ss_pred ----------------------------------------------------cCCCcEeeeccCCCCcccCCCCCCC---
Q psy7266 503 ----------------------------------------------------DGLKPRCITRDLKWGIPVPLPGFEN--- 527 (1175)
Q Consensus 503 ----------------------------------------------------~~l~dw~ISR~~~WG~piP~~~~e~--- 527 (1175)
-.++||.+||||+||.|||+-+|+.
T Consensus 365 vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~ 444 (814)
T COG0495 365 VIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGV 444 (814)
T ss_pred EEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCc
Confidence 0468999999999999999865421
Q ss_pred ----------------------------------------------ce-EEecCc--------------------ccccc
Q psy7266 528 ----------------------------------------------KY-SLSSSP--------------------SLVQF 540 (1175)
Q Consensus 528 ----------------------------------------------~v-vWfds~--------------------~~~~~ 540 (1175)
.+ +|++|+ .+.+|
T Consensus 445 ~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW 524 (814)
T COG0495 445 VPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYW 524 (814)
T ss_pred ccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcc
Confidence 11 455554 45678
Q ss_pred CCCCCCCCcceEEEEeeccccchhHhH---HHHHHHHhCC--CcccCeEEEeeceeec-CCCcccccCCCccCchhhhhc
Q psy7266 541 LPTATPQSKITLYQFMAKDNVPFHSIM---FPATLVAAGD--QYTKVNHIMATEYLNY-EDGKFSKSRGTGVFGNNAKDT 614 (1175)
Q Consensus 541 wp~~~~~~~v~~~~~~GkD~i~fh~~~---~pa~l~~~~~--~~~~p~~i~~~g~l~~-~G~KMSKS~GN~v~~~d~i~~ 614 (1175)
+|.| +++.|+||+..|..| |+..|...|+ ...|++.++++|||+. +|+|||||+||+|+|+++++.
T Consensus 525 ~PVD--------~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~ 596 (814)
T COG0495 525 YPVD--------LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK 596 (814)
T ss_pred cChh--------eeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH
Confidence 8888 899999999999885 4556655543 1346677999999998 799999999999999999996
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHHHHHHHHHH
Q psy7266 615 GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST--IPEISPIHEDFLLLALINRE 692 (1175)
Q Consensus 615 ~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~--~p~~~~~~~d~~l~~~l~~~ 692 (1175)
||||++|+|+++.+|..+|++|+.+.+. +...|++|+.+++....... .........++|++ +++
T Consensus 597 -yGADt~Rl~~m~~ap~~~d~~W~e~gv~---------g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~---h~~ 663 (814)
T COG0495 597 -YGADTVRLYIMFAAPPEQDLEWSESGVE---------GARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLL---HRT 663 (814)
T ss_pred -hCchHHHHHHHhhCChhhCCCCChhhhH---------HHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHH---HHH
Confidence 9999999999999999999999999875 45667777777766543321 11111113455655 555
Q ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH
Q psy7266 693 LSAYYSVLDK-AKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTI 771 (1175)
Q Consensus 693 ~~~~~~~~e~-~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i 771 (1175)
++.+.+.++. +.++.++..+|.|.+...+|...... .. .++.+++..+.+||+||+||+||||
T Consensus 664 ~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~---------~~-------~~l~~~l~~~v~lLaP~aPH~aEEl 727 (814)
T COG0495 664 IKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG---------DR-------KVLREALETWVRLLAPFAPHIAEEL 727 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hH-------HHHHHHHHHHHHHhcccccHHHHHH
Confidence 6666777766 89999999999999999999875432 11 3457889999999999999999999
Q ss_pred HHHcCCC
Q psy7266 772 ASQLGAS 778 (1175)
Q Consensus 772 ~~~L~~~ 778 (1175)
|+.||..
T Consensus 728 W~~lg~~ 734 (814)
T COG0495 728 WEELGNE 734 (814)
T ss_pred HHHhcCC
Confidence 9999963
No 35
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-71 Score=707.15 Aligned_cols=445 Identities=19% Similarity=0.246 Sum_probs=357.9
Q ss_pred CCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc---------------CC---------CchhhHH
Q psy7266 296 PHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE---------------GL---------TPRQICD 351 (1175)
Q Consensus 296 lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~---------------g~---------~p~~~~~ 351 (1175)
|||||+++.++ +|+++||+||+||+|+|++|||+||+||+..|++. |+ +|.++++
T Consensus 1 lHiGH~~~~t~-~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRTYTI-GDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHHHHH-HHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 79999999888 99999999999999999999999999999987532 43 4567788
Q ss_pred HHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc---------
Q psy7266 352 KYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG--------- 420 (1175)
Q Consensus 352 ~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g--------- 420 (1175)
+|...+++++++||+++||.+ .|+||.|.++|+|+|.+|+++|+||++.++++|||.|+|+|+|+++..
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 899999999999999999976 599999999999999999999999999999999999999999965520
Q ss_pred -----------------c--------------------------------------------------------------
Q psy7266 421 -----------------V-------------------------------------------------------------- 421 (1175)
Q Consensus 421 -----------------~-------------------------------------------------------------- 421 (1175)
|
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 0
Q ss_pred ----------------------------CCCccccC--------------------------------------------
Q psy7266 422 ----------------------------CPKCRYED-------------------------------------------- 429 (1175)
Q Consensus 422 ----------------------------cP~c~~~d-------------------------------------------- 429 (1175)
||+++.+|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 01111000
Q ss_pred ------------------CCCCcccccCCcc----------------------ccccc-cCCcccCCCCccEEee-cccc
Q psy7266 430 ------------------ARGDQCDGCGQLI----------------------NAIEL-IQPRCKQCSQAPTVKS-STQL 467 (1175)
Q Consensus 430 ------------------~~G~~c~~~g~~~----------------------~~~el-~~~~c~r~~~~~~~~~-~~qw 467 (1175)
..|.+.+.+|.+. ...++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0111112222211 00122 2588999999999986 6999
Q ss_pred cccch--hHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCC---CCC----C-----------
Q psy7266 468 FLELP--KIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP---GFE----N----------- 527 (1175)
Q Consensus 468 fl~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~---~~e----~----------- 527 (1175)
|++++ ++++.++++++++. .+|+..++++.+|| ++++||||||||+||+|||++ -++ .
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~-~~P~~~~~~~~~~l-~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~ 477 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNME-IIPEEYRKEFENTI-DWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAH 477 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCE-EECHHHHHHHHHHH-hhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHH
Confidence 99998 79999999998764 46778899999999 589999999999999999962 110 0
Q ss_pred --------------ce-------------EEecCc-----------cccccCCCCCCCCcceEEEEeeccccchhHhHHH
Q psy7266 528 --------------KY-------------SLSSSP-----------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFP 569 (1175)
Q Consensus 528 --------------~v-------------vWfds~-----------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~p 569 (1175)
.+ +|++++ +|++|||.| +|++|+||++||..+|
T Consensus 478 ~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D--------~~~~GkDii~~Hl~~~- 548 (897)
T PRK12300 478 KIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVD--------WRHSGKDLIPNHLTFF- 548 (897)
T ss_pred HHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCce--------EEEeeeccCccHHHHH-
Confidence 01 233433 467799998 9999999999999998
Q ss_pred HHHHHhCCC-cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhH
Q psy7266 570 ATLVAAGDQ-YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNS 648 (1175)
Q Consensus 570 a~l~~~~~~-~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~ 648 (1175)
.++..+..+ .++|+++++||||+.+|+|||||+||+|+|.++++. ||+|++||||++.++.++|.+|+++.+.
T Consensus 549 ~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~----- 622 (897)
T PRK12300 549 IFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVE----- 622 (897)
T ss_pred HHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHH-----
Confidence 344433333 367799999999988999999999999999999996 9999999999998899999999999765
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHhcC
Q psy7266 649 ELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYIL-NISRYCNQYMQTQQ 727 (1175)
Q Consensus 649 ~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~-~~~~~~n~yi~~~k 727 (1175)
..+|+++|+..++....+.. +...+...|+|++++++.+++.+.++|++|+|+.|++.++ .+.+.+|+|++.++
T Consensus 623 ----~~~~~l~r~~~~~~~~~~~~-~~~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k 697 (897)
T PRK12300 623 ----SVRRQLERFYELAKELIEIG-GEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVG 697 (897)
T ss_pred ----HHHHHHHHHHHHHHHHhcCC-CccccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666555554433222 2223567899999999999999999999999999999885 66788999999766
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
+ .++.++.++++.+++||+|||||+||+||++|+.+
T Consensus 698 ~---------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 698 E---------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred h---------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 4 23456789999999999999999999999999854
No 36
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.7e-69 Score=626.56 Aligned_cols=312 Identities=21% Similarity=0.276 Sum_probs=282.8
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc---------CCCch----
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE---------GLTPR---- 347 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~---------g~~p~---- 347 (1175)
++|+|++|||||||.|||||+++.++ +|+++||+||+|++|+|++|||+||+|||..+++. +++|+
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~-~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHH-HHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 47999999999999999999998776 99999999999999999999999999999998764 44443
Q ss_pred ---hhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccC
Q psy7266 348 ---QICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVC 422 (1175)
Q Consensus 348 ---~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~c 422 (1175)
++++++++.+++++++|||++|| +++|++|.|.+.|+++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 57899999999999999999994 668999999999999999999999999999999999999999999876
Q ss_pred CCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHHh
Q psy7266 423 PKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWL 501 (1175)
Q Consensus 423 P~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl 501 (1175)
|+|||++++++.++||||+|++++++|++++++++.. ||++.++++.+||
T Consensus 156 -----------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l 206 (382)
T cd00817 156 -----------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWL 206 (382)
T ss_pred -----------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHH
Confidence 7889999999999999999999999999999985434 5778999999999
Q ss_pred hcCCCcEeeeccCCCCcccCCCCCC----------------------------------Cce--EEecCc----------
Q psy7266 502 KDGLKPRCITRDLKWGIPVPLPGFE----------------------------------NKY--SLSSSP---------- 535 (1175)
Q Consensus 502 ~~~l~dw~ISR~~~WG~piP~~~~e----------------------------------~~v--vWfds~---------- 535 (1175)
+ +++||||||+++||+|||+|+|+ ++| |||||+
T Consensus 207 ~-~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~ 285 (382)
T cd00817 207 E-NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWP 285 (382)
T ss_pred h-hCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCC
Confidence 5 59999999999999999997653 567 999998
Q ss_pred ----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchh
Q psy7266 536 ----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNN 610 (1175)
Q Consensus 536 ----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d 610 (1175)
+|++|||.| +|++|+||++||..++.++.+++. +..++..+++||+|+ .+|+|||||+||+|+|.|
T Consensus 286 ~~~~~~~~~~p~d--------~~~~G~D~~~~h~~~~l~~~~~~~-g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~d 356 (382)
T cd00817 286 EETKDLKKFYPTS--------LLVTGHDIIFFWVARMIMRGLKLT-GKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLD 356 (382)
T ss_pred CcchhHhhcCCCC--------eeeeecCcCchHHHHHHHHHHHhh-CCCchHHeEeeeeEECCCCCCccccCCCCCCHHH
Confidence 256789998 999999999999999887776653 233459999999997 799999999999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCCCccc
Q psy7266 611 AKDTGLPADIFRFYLLYVRPENQDTSF 637 (1175)
Q Consensus 611 ~i~~~~gaDalR~~ll~~~~~~~D~~f 637 (1175)
+++. ||+|++|||+++..+.++|.+|
T Consensus 357 ll~~-~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 357 VIDG-YGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHh-cCcHHHHHHHHhCCCccCCCCC
Confidence 9996 9999999999999999999987
No 37
>KOG0434|consensus
Probab=100.00 E-value=6.9e-66 Score=581.14 Aligned_cols=507 Identities=19% Similarity=0.269 Sum_probs=395.6
Q ss_pred CCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCc
Q psy7266 244 SKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNT 322 (1175)
Q Consensus 244 ~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v 322 (1175)
++.+++.+-|++ .++|.+.+.|...-.. ..++++|.+.++||+++|.||.||+...+| .|++.||..|.||.|
T Consensus 5 ~~n~nfp~eEEkvle~W~e~~aF~~slk~-----sk~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hV 78 (1070)
T KOG0434|consen 5 PENFNFPKEEEKVLEFWREIDAFHTSLKL-----SKGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHV 78 (1070)
T ss_pred cccCCCchhHHHHHHHHHHhhHHHHHHHh-----hCCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccce
Confidence 456888888888 9999999999643211 236789999999999999999999999999 999999999999999
Q ss_pred ccccccCCcchHHHHHHH-HcCCC----------------chhhHHHHHHHHHHHHhhcc--ccccccCCCCCHHHHHHH
Q psy7266 323 LYVSGTDEYGTATETKAL-EEGLT----------------PRQICDKYFAIHREVYEWFE--IDFDYFGRTSTPQQTEIV 383 (1175)
Q Consensus 323 ~~~~G~D~~G~~ie~~a~-~~g~~----------------p~~~~~~~~~~~~~~~~~lg--i~~D~~~~T~~~~~~~~v 383 (1175)
-..+|||+||+|+|.... +.|++ +..++-.|...++....+|| |+||..++|++|.+++.|
T Consensus 79 eRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESv 158 (1070)
T KOG0434|consen 79 ERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESV 158 (1070)
T ss_pred eeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHH
Confidence 999999999999997654 44544 34455678899999999999 788888999999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec------------------c----------c-----------C--
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE------------------G----------V-----------C-- 422 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~------------------g----------~-----------c-- 422 (1175)
+|+|.+|+++|++|++-+..+|+..|.|+||+-+-. | | |
T Consensus 159 WwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vn 238 (1070)
T KOG0434|consen 159 WWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVN 238 (1070)
T ss_pred HHHHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEc
Confidence 999999999999999999999999999999983211 0 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 423 -------------------------------------------------------------------------------- 422 (1175)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (1175)
T Consensus 239 p~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~s 318 (1070)
T KOG0434|consen 239 PDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDS 318 (1070)
T ss_pred CCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCC
Confidence
Q ss_pred --------CCcccc---------------------CCCCCccc----ccCCcc--------------------ccccccC
Q psy7266 423 --------PKCRYE---------------------DARGDQCD----GCGQLI--------------------NAIELIQ 449 (1175)
Q Consensus 423 --------P~c~~~---------------------d~~G~~c~----~~g~~~--------------------~~~el~~ 449 (1175)
|+.|.+ |..|.... -.|.++ ..+.|++
T Consensus 319 GTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsY 398 (1070)
T KOG0434|consen 319 GTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSY 398 (1070)
T ss_pred CceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeecc
Confidence 100000 11111100 011111 1235899
Q ss_pred CcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCch-HH-HHHHHHhhcCCCcEeeeccCCCCcccCCCCCC-
Q psy7266 450 PRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSN-AR-VICKAWLKDGLKPRCITRDLKWGIPVPLPGFE- 526 (1175)
Q Consensus 450 ~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e- 526 (1175)
|.|||+++|+++|..++||+++..+.++|++...+. .|.|. .+ .++.||| ++.+||.|||+|+||+|||+|-.+
T Consensus 399 PFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t--~WVP~~ikeKRF~NWL-~nARDW~iSRnR~WGTPIpLWVSdD 475 (1070)
T KOG0434|consen 399 PFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKT--HWVPQNIKEKRFANWL-KNARDWNISRNRYWGTPIPLWVSDD 475 (1070)
T ss_pred CceecCCChHHHhhccHhhhhHHHHHHHHHhccccc--ccCChhhhHHHHHHHH-hhhhhcccccccccCCCcceEEccC
Confidence 999999999999999999999999999988766554 48664 54 6899999 689999999999999999998421
Q ss_pred ----------------------------------------------Cce--EEecCc---------------cccccCCC
Q psy7266 527 ----------------------------------------------NKY--SLSSSP---------------SLVQFLPT 543 (1175)
Q Consensus 527 ----------------------------------------------~~v--vWfds~---------------~~~~~wp~ 543 (1175)
..| +||+|+ .|+.-+|+
T Consensus 476 ~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPa 555 (1070)
T KOG0434|consen 476 YEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPA 555 (1070)
T ss_pred CceEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCch
Confidence 134 999998 34444555
Q ss_pred CCCCCcceEEEEe--ecccc--chhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCc
Q psy7266 544 ATPQSKITLYQFM--AKDNV--PFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPA 618 (1175)
Q Consensus 544 ~~~~~~v~~~~~~--GkD~i--~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~ga 618 (1175)
+ || |-|+. ||+++...+.++ ++.+++++++++|+|+ .+|+|||||+.|+.+|..++++ |||
T Consensus 556 d----------FIaEGlDQTRGWFYTL~VlsT~L---F~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iink-YGA 621 (1070)
T KOG0434|consen 556 D----------FIAEGLDQTRGWFYTLLVLSTAL---FGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINK-YGA 621 (1070)
T ss_pred H----------hhhhccccccchhhHHHHHHHHH---cCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHh-hcc
Confidence 4 54 77877 687776444333 3578889999999997 6789999999999999999996 999
Q ss_pred hhHHHHHHhcC-CCCCCccccHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHhcCCCCCC---CCCChhhHHHHHHHH
Q psy7266 619 DIFRFYLLYVR-PENQDTSFSWQDLATKNNSELLNNLGN----FINRALSFIEKNYGSTIPE---ISPIHEDFLLLALIN 690 (1175)
Q Consensus 619 DalR~~ll~~~-~~~~D~~f~~~~~~~~~n~~l~~~l~n----~~~r~~~~~~~~~~~~~p~---~~~~~~d~~l~~~l~ 690 (1175)
|+||+||+.+- .....+.|.++.+.+.+...|+ -++| ++.++..+-..-....++. ...+.+|+||++..+
T Consensus 622 DalRlYLInSPVvraE~LkFkeeGVrevvk~v~l-PW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~q 700 (1070)
T KOG0434|consen 622 DALRLYLINSPVVRAENLKFKEEGVREVVKDVLL-PWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQ 700 (1070)
T ss_pred hheeeeeecCccccccccccchhhHHHHHHhhhh-hhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHH
Confidence 99999999853 3567899999999876655443 3334 3333322211100001111 134569999999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Q psy7266 691 RELSAYYSVLDKAKLRDGIRYILNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAS 769 (1175)
Q Consensus 691 ~~~~~~~~~~e~~~~~~a~~~i~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se 769 (1175)
.++.-+.+.|+.|++..++-.+..|+ .+.|||++.++.+. ++++. ...+...|.++.++|..+.++|+||.||+||
T Consensus 701 slv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrl--kGe~G-~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE 777 (1070)
T KOG0434|consen 701 SLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRL--KGENG-EHDCHNALNVLFEVLFTLVRVMAPFTPFFTE 777 (1070)
T ss_pred HHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhh--cCCCc-hHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999999999995 89999999998753 44332 3457788899999999999999999999999
Q ss_pred HHHHHcCC
Q psy7266 770 TIASQLGA 777 (1175)
Q Consensus 770 ~i~~~L~~ 777 (1175)
.||+.|..
T Consensus 778 ~iyq~Lk~ 785 (1070)
T KOG0434|consen 778 YIYQNLKK 785 (1070)
T ss_pred HHHHHHHh
Confidence 99999964
No 38
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.7e-66 Score=638.70 Aligned_cols=365 Identities=20% Similarity=0.336 Sum_probs=287.5
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHH
Q psy7266 256 KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335 (1175)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~i 335 (1175)
+++|++.+.|+.... +..++++|+|+.||||+||.|||||+++.++ .|+++||+||+||+|+|++||||||+||
T Consensus 3 ~~~W~~~~~~~~~~~-----~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~-~D~i~Ry~rm~G~~v~~~~G~D~~Glpi 76 (601)
T PF00133_consen 3 QKFWEENKLFEKQLE-----KNKNKPKFFIHDPPPYANGDLHIGHALNKTI-KDIIARYKRMQGYNVLFPPGWDCHGLPI 76 (601)
T ss_dssp HHHHHHTTCCHHHHH-----CTTTSGEEEEEE---BTSSS-BHHHHHHHHH-HHHHHHHHHCTTSEEEEEEEEB--SHHH
T ss_pred hHHHhhCCCcccccc-----cCCCCCcEEEEeCCCCCCCcccHHHHHHHHH-HHHHHHHHHhCCcEeCCCCCcCCCCcch
Confidence 789999999976411 2346789999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHc-CCC----------------chhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCE
Q psy7266 336 ETKALEE-GLT----------------PRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFT 396 (1175)
Q Consensus 336 e~~a~~~-g~~----------------p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~i 396 (1175)
|.++++. |.. +.++++++.+.+++++++||+++||.+ .|+||.|.++++++|.+|+++|+|
T Consensus 77 e~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglI 156 (601)
T PF00133_consen 77 EAKVEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLI 156 (601)
T ss_dssp HHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSE
T ss_pred hhhHHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcE
Confidence 9988753 432 346677788899999999999999875 699999999999999999999999
Q ss_pred EeceEEEeeeCCCCcccccceecc--------------------------------------------------------
Q psy7266 397 SSASVEQLHCAQCDRFLADRFVEG-------------------------------------------------------- 420 (1175)
Q Consensus 397 y~~~~~~~~c~~~~~~l~d~~V~g-------------------------------------------------------- 420 (1175)
|++.++++|||.|+|+|||.+|+.
T Consensus 157 yr~~~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~ 236 (601)
T PF00133_consen 157 YRGKKPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVA 236 (601)
T ss_dssp EEEEEEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEE
T ss_pred EeeCCCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHH
Confidence 999999999999999999986640
Q ss_pred --------------------------------------------------c-----CCCccc----------------cC
Q psy7266 421 --------------------------------------------------V-----CPKCRY----------------ED 429 (1175)
Q Consensus 421 --------------------------------------------------~-----cP~c~~----------------~d 429 (1175)
| ||+++. -|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id 316 (601)
T PF00133_consen 237 KDLVEKLSKQEKTKLEDFRGKELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPID 316 (601)
T ss_dssp HHHHHHHHTTTSSSEEEEECHHHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCC
T ss_pred HHHHHHHHhhhhhcccccCcceecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecC
Confidence 0 122211 14
Q ss_pred CCCCcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhc
Q psy7266 430 ARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET 485 (1175)
Q Consensus 430 ~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~ 485 (1175)
.+|...+.+|.+. ..++|.+|+|+|||++++++.++|||++++++++.+++.++++
T Consensus 317 ~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i 396 (601)
T PF00133_consen 317 EDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKI 396 (601)
T ss_dssp CTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTS
T ss_pred CCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccc
Confidence 5666666655542 1245788999999999999999999999999999999999976
Q ss_pred CCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC----------------------------------------
Q psy7266 486 SDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF---------------------------------------- 525 (1175)
Q Consensus 486 ~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~---------------------------------------- 525 (1175)
. ..|+..++.+.+|| ++++||||||||+||+|||+|.+
T Consensus 397 ~-~~P~~~~~~~~~~i-~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (601)
T PF00133_consen 397 K-FYPESYRKRFENWI-DNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCC 474 (601)
T ss_dssp E-ESSSTCHHHHHHHH-HT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTT
T ss_pred e-EEcccchhhhhhhc-cccccchhhccCCCCccceeeecccCccccccccccccccccccccccccccccccccccccc
Confidence 4 45778899999999 68999999999999999998753
Q ss_pred ------CCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 526 ------ENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 526 ------e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
+.+| |||||+ +|++|+|.| +++.|+||+++|..+...+..++. +..++
T Consensus 475 ~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D--------~~~~G~D~~~~W~~~~l~~~~~l~-~~~pf 545 (601)
T PF00133_consen 475 GGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVD--------LYIEGKDQIRGWFQSSLFLSVALF-GKEPF 545 (601)
T ss_dssp SSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBS--------EEEEEGGGTTTHHHHHHHHHHHHS-SSTSB
T ss_pred ccceEEeeeeccccccccCCcccccccccccchhccccCCcc--------cccCCccchhhHHHHhHhhccccc-cCCch
Confidence 1256 999986 356789998 899999999998765433333332 45677
Q ss_pred eEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q psy7266 583 NHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFS 638 (1175)
Q Consensus 583 ~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~ 638 (1175)
+.+++||||+ .+|+|||||+||+|+|.++++. ||+|++|+|+++.+..++|++||
T Consensus 546 k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 546 KKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp SEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred heeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhcCCcccCcccC
Confidence 9999999985 7899999999999999999997 99999999999888889999986
No 39
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3e-65 Score=583.37 Aligned_cols=301 Identities=44% Similarity=0.798 Sum_probs=277.6
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
+|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++|+|+||++|+.+|++.|++|+++|+.+.+.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~-~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHH-HHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCc
Q psy7266 362 EWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 362 ~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
++|||++|.+.+|+++.|.+.|+++|.+|+++|++|+++..++||+.|+++|+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999998875
Q ss_pred cccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCCCcEeeeccC-CCCcc
Q psy7266 442 INAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDL-KWGIP 519 (1175)
Q Consensus 442 ~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~~~l~dw~ISR~~-~WG~p 519 (1175)
+.+.++||||+|+++++.|.+++++... .||++.++.+.+||.++++||||||++ +||+|
T Consensus 133 ------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGip 194 (319)
T cd00814 133 ------------------EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194 (319)
T ss_pred ------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCee
Confidence 5677899999999999999999998764 589999999999998889999999999 99999
Q ss_pred cCCCCCCCce--EEecCc-c------c---c----ccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCe
Q psy7266 520 VPLPGFENKY--SLSSSP-S------L---V----QFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVN 583 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~-~------~---~----~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~ 583 (1175)
+|.+ ++++ |||||+ . + . .||.. .....+||+|+||++||+++||+++++++ +++|+
T Consensus 195 vp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~----~~~~~v~~~G~D~~~fh~~~~pa~l~~~~--~~~~~ 266 (319)
T cd00814 195 VPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD----GWPELVHFIGKDIIRFHAIYWPAMLLGAG--LPLPT 266 (319)
T ss_pred CCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc----CCCceEEEEeechhhhhHHHHHHHHHhCC--CCCCc
Confidence 9974 5666 999997 1 0 1 12221 23345999999999999999999999886 78899
Q ss_pred EEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccc
Q psy7266 584 HIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSF 637 (1175)
Q Consensus 584 ~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f 637 (1175)
.+++|||++.+|+|||||+||+|+|.++++. ||+|++||||++.+|+++|.+|
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~-~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999999999996 9999999999999999999998
No 40
>KOG0435|consensus
Probab=100.00 E-value=4.2e-64 Score=569.04 Aligned_cols=460 Identities=18% Similarity=0.277 Sum_probs=369.1
Q ss_pred HHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccC
Q psy7266 251 EIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTD 329 (1175)
Q Consensus 251 ~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D 329 (1175)
.||.. .++|.+...+..+. ..++++ ||.+.+|||||.|||||.|.++| .|+++||+||+||+|++++|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~-------d~sk~K-YiLsMFPYPSG~LHiGHvRVYTI-sD~laRf~rm~GynVihPMGWD 104 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDS-------DKSKKK-YILSMFPYPSGALHIGHVRVYTI-SDILARFYRMKGYNVIHPMGWD 104 (876)
T ss_pred HHHHHHHHHHhcCCcccccc-------ccCCCc-eEEEecCCCCCcccccceEEEEe-hHHHHHHHHhcCceeecCCccc
Confidence 78888 99999887775422 124555 99999999999999999999999 9999999999999999999999
Q ss_pred CcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeC
Q psy7266 330 EYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCA 407 (1175)
Q Consensus 330 ~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~ 407 (1175)
.+|+|.|.+|.+.|++|..++..+++.+++++.+|||+|||.+ .|.+|+|.++.||+|.+|+++|++|+.+.+|||||
T Consensus 105 aFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDP 184 (876)
T KOG0435|consen 105 AFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDP 184 (876)
T ss_pred ccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCc
Confidence 9999999999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred CCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC
Q psy7266 408 QCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD 487 (1175)
Q Consensus 408 ~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~ 487 (1175)
.++|+|++++|+ .++++||+|..+|.+...||||++++|+++|++.++..+
T Consensus 185 vD~TVLAnEQVD----------------------------~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~- 235 (876)
T KOG0435|consen 185 VDKTVLANEQVD----------------------------ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLP- 235 (876)
T ss_pred ccceeecchhhc----------------------------ccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhh-
Confidence 999999999985 245689999999999999999999999999999999765
Q ss_pred CCCchHHHHHHHHhhc----------------------------------------------------------------
Q psy7266 488 QWSSNARVICKAWLKD---------------------------------------------------------------- 503 (1175)
Q Consensus 488 ~~~~~~~~~~~~wl~~---------------------------------------------------------------- 503 (1175)
.||. ++++.++|+.+
T Consensus 236 ~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg 314 (876)
T KOG0435|consen 236 EWPE-VKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKG 314 (876)
T ss_pred hhhh-HHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccC
Confidence 5988 88888877321
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 504 -------------------------------------------------------------------------------- 503 (1175)
Q Consensus 504 -------------------------------------------------------------------------------- 503 (1175)
T Consensus 315 ~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~ 394 (876)
T KOG0435|consen 315 VQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIR 394 (876)
T ss_pred cccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHH
Confidence
Q ss_pred -----------------------CCCcEeeeccCCCCcccCCCCC-----------------------------------
Q psy7266 504 -----------------------GLKPRCITRDLKWGIPVPLPGF----------------------------------- 525 (1175)
Q Consensus 504 -----------------------~l~dw~ISR~~~WG~piP~~~~----------------------------------- 525 (1175)
.|+||.|||||+||+|||+-+|
T Consensus 395 q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e 474 (876)
T KOG0435|consen 395 QNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADE 474 (876)
T ss_pred HHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhh
Confidence 4789999999999999998654
Q ss_pred ---------------CCce--EEecCc-c------------------ccccCCCCCCCCcceEEEEeeccccchhHh---
Q psy7266 526 ---------------ENKY--SLSSSP-S------------------LVQFLPTATPQSKITLYQFMAKDNVPFHSI--- 566 (1175)
Q Consensus 526 ---------------e~~v--vWfds~-~------------------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~--- 566 (1175)
|.+. +|+||+ . -.+|.|.| +++.|++|.-.|..
T Consensus 475 ~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVD--------vYIGG~EHAvlHLlYaR 546 (876)
T KOG0435|consen 475 WVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVD--------VYIGGKEHAVLHLLYAR 546 (876)
T ss_pred heeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCcee--------EEeccHHHHHHHHHHHH
Confidence 1233 889887 1 13445555 89999999877766
Q ss_pred HHHHHHHHhCC--CcccCeEEEeeceee------c-CC-------------------------------CcccccCCCcc
Q psy7266 567 MFPATLVAAGD--QYTKVNHIMATEYLN------Y-ED-------------------------------GKFSKSRGTGV 606 (1175)
Q Consensus 567 ~~pa~l~~~~~--~~~~p~~i~~~g~l~------~-~G-------------------------------~KMSKS~GN~v 606 (1175)
+|.-++...|. ...||+.++..|+|. . .| +|||||++|+|
T Consensus 547 F~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGV 626 (876)
T KOG0435|consen 547 FIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGV 626 (876)
T ss_pred HHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCC
Confidence 34445555553 235667666666542 1 12 59999999999
Q ss_pred CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCChh
Q psy7266 607 FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI-----SPIHE 681 (1175)
Q Consensus 607 ~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~-----~~~~~ 681 (1175)
+|.++++. ||+|++|+|++..+|+..+++|+.+.+... ..++..+|+++.++..- .-++..++. ....+
T Consensus 627 dP~~~v~~-yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi--~rwl~riw~l~~~~~~a---r~~g~~~d~~~~td~~dae 700 (876)
T KOG0435|consen 627 DPADVVLE-YGVDTTRLYILFAAPPRDPINWNESAIPGI--KRWLQRIWALVSQILQA---RDDGKAKDLKKLTDGFDAE 700 (876)
T ss_pred CHHHHHHH-hCchHHHHHHHhhCCcccccccccccchhH--HHHHHHHHHHHHHHHHH---HhcCCcccccccccccchh
Confidence 99999996 999999999999999999999998887643 22344555554443332 112222221 12345
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHc
Q psy7266 682 DFLLLALINRELSAYYSVLD-KAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLL 760 (1175)
Q Consensus 682 d~~l~~~l~~~~~~~~~~~e-~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL 760 (1175)
++.+.+..|.+++.+.++++ .+.++.|+..+|.|.+....-+....-| + .....++..+.+||
T Consensus 701 ~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h----~------------~~~~~al~~lv~ml 764 (876)
T KOG0435|consen 701 TRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVH----S------------PEFERALEALVIML 764 (876)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc----C------------hHHHHHHHHHHHHH
Confidence 67899999999999999996 5669999999999976544333222211 1 01135567778899
Q ss_pred cchhhHHHHHHHHHcCCCc
Q psy7266 761 SPYMPSTASTIASQLGASH 779 (1175)
Q Consensus 761 ~PfmP~~se~i~~~L~~~~ 779 (1175)
+||.||+|+|+|..|+.+.
T Consensus 765 aP~aPh~asE~Ws~l~~~~ 783 (876)
T KOG0435|consen 765 APFAPHVASELWSALANDL 783 (876)
T ss_pred hccCchhHHHHHHHHhccc
Confidence 9999999999999999553
No 41
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.1e-62 Score=558.99 Aligned_cols=290 Identities=21% Similarity=0.345 Sum_probs=262.7
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc-CCCc-------------
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLTP------------- 346 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~-g~~p------------- 346 (1175)
++|+|.+|||||||.|||||+++.++ +|+++||+||+||+|+|++||||||+||+.++++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~-~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKIL-KDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHH-HHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 46999999999999999999999887 99999999999999999999999999999999876 8775
Q ss_pred ---hhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc
Q psy7266 347 ---RQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV 421 (1175)
Q Consensus 347 ---~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~ 421 (1175)
++++++|.+.|.+++++|||++|| +++|+++.|.+.++++|.+|+++|+||++.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 689999999999999999996554 67899999999999999999999999999988877
Q ss_pred CCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q psy7266 422 CPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWL 501 (1175)
Q Consensus 422 cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl 501 (1175)
+++.+.++||||+++++++.+++++++.+ .+|...++++.+|+
T Consensus 144 ------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~-~~P~~~~~~~~~~l 186 (338)
T cd00818 144 ------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVN-WIPEWVKNRFGNWL 186 (338)
T ss_pred ------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCc-EECHHHHHHHHHHH
Confidence 46788999999999999999999998753 35778899999999
Q ss_pred hcCCCcEeeeccCCCCcccCCCCCC----------Cce--EEecCc--------------cccccCCCCCCCCcceEEEE
Q psy7266 502 KDGLKPRCITRDLKWGIPVPLPGFE----------NKY--SLSSSP--------------SLVQFLPTATPQSKITLYQF 555 (1175)
Q Consensus 502 ~~~l~dw~ISR~~~WG~piP~~~~e----------~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~ 555 (1175)
++|+|||||||++||+|+|+|.++ ++| |||||+ +|++|||.+ +++
T Consensus 187 -~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--------~~~ 257 (338)
T cd00818 187 -ENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--------FIL 257 (338)
T ss_pred -hcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--------EEe
Confidence 579999999999999999998765 567 999996 256789987 899
Q ss_pred eeccccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCC
Q psy7266 556 MAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPEN 632 (1175)
Q Consensus 556 ~GkD~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~ 632 (1175)
+|+||++ ||.++||++++. +..+|+.+++||+++ .+|+|||||+||+|+|.|+++. ||+|++||||++..+.+
T Consensus 258 ~GkDii~~wf~~~~~~~~~~~---~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-~~~D~~R~~l~~~~~~~ 333 (338)
T cd00818 258 EGSDQTRGWFYSLLLLSTALF---GKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDK-YGADALRLWVASSDVYA 333 (338)
T ss_pred ecchHHhHHHHHHHHHHHHhc---CCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHH-cCcHHHHHHHHhCCCcc
Confidence 9999995 999999998753 256789999999986 5899999999999999999996 99999999999999999
Q ss_pred CCccc
Q psy7266 633 QDTSF 637 (1175)
Q Consensus 633 ~D~~f 637 (1175)
+|++|
T Consensus 334 ~d~~~ 338 (338)
T cd00818 334 EDLRF 338 (338)
T ss_pred CCCCC
Confidence 99886
No 42
>KOG0433|consensus
Probab=100.00 E-value=2.3e-59 Score=535.13 Aligned_cols=478 Identities=19% Similarity=0.262 Sum_probs=376.0
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHH-HHHH------HcCCCchh---
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATE-TKAL------EEGLTPRQ--- 348 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie-~~a~------~~g~~p~~--- 348 (1175)
.+..|+..+ +||.|||||+++.+| .|++.||+-++|.+++|++|||+||+|+| .+|. +..++|.+
T Consensus 57 q~~~f~L~d----anG~lhlghalnkIL-kdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~ 131 (937)
T KOG0433|consen 57 QRVEFELKD----ANGNLHLGHALNKIL-KDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRA 131 (937)
T ss_pred cCceEEEec----cCCCccchHHHHHHH-HHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHH
Confidence 345566666 999999999999998 99999999999999999999999999999 5654 22346654
Q ss_pred ----hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec---
Q psy7266 349 ----ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE--- 419 (1175)
Q Consensus 349 ----~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~--- 419 (1175)
++++-.+..++.++++||--||-. -|++|.|...-.++|.+|+++|+||++..+|+|+|..+|.|++.++|
T Consensus 132 ~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~ 211 (937)
T KOG0433|consen 132 KARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYND 211 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCc
Confidence 445566777888999999999965 59999999999999999999999999999999999999999987654
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 420 -------------------------------------------------------------------------------- 419 (1175)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (1175)
T Consensus 212 nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~f 291 (937)
T KOG0433|consen 212 NHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEF 291 (937)
T ss_pred CCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhh
Confidence
Q ss_pred -----------ccC----------------------------------------CCcccc----------------CCCC
Q psy7266 420 -----------GVC----------------------------------------PKCRYE----------------DARG 432 (1175)
Q Consensus 420 -----------g~c----------------------------------------P~c~~~----------------d~~G 432 (1175)
|+| |++|.+ |.+|
T Consensus 292 e~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G 371 (937)
T KOG0433|consen 292 EKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRG 371 (937)
T ss_pred hhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCC
Confidence 000 122221 3455
Q ss_pred CcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC
Q psy7266 433 DQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ 488 (1175)
Q Consensus 433 ~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~ 488 (1175)
....+.|..+ +...|.+|+-||+..|+++|.++|||+++.+++....+.+++++ .
T Consensus 372 ~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk-~ 450 (937)
T KOG0433|consen 372 CYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVK-V 450 (937)
T ss_pred ceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhce-e
Confidence 5444444221 13468999999999999999999999999999999999999885 4
Q ss_pred CCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC-------------------------------------------
Q psy7266 489 WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF------------------------------------------- 525 (1175)
Q Consensus 489 ~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~------------------------------------------- 525 (1175)
.|....+.+..++ ....+|||||||.||+|||.-+.
T Consensus 451 ~P~~~~~rl~~~~-~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~ 529 (937)
T KOG0433|consen 451 APGDSDLRLKQLV-TTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVR 529 (937)
T ss_pred CCcchHHHHHHHH-cCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhc
Confidence 6778888888999 68889999999999999997431
Q ss_pred -----------CCce--EEecCc-cccccCCCCCCCCcceEEEEeecccc--chhHhHHHHHHHHhCCCcccCeEEEeec
Q psy7266 526 -----------ENKY--SLSSSP-SLVQFLPTATPQSKITLYQFMAKDNV--PFHSIMFPATLVAAGDQYTKVNHIMATE 589 (1175)
Q Consensus 526 -----------e~~v--vWfds~-~~~~~wp~~~~~~~v~~~~~~GkD~i--~fh~~~~pa~l~~~~~~~~~p~~i~~~g 589 (1175)
-.++ |||||+ .|...-+.. ...+--+++-|.|+. ||.+.+...+... +..|++.+++||
T Consensus 530 e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~--~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q---~kAPYk~vivHG 604 (937)
T KOG0433|consen 530 EIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNE--REHVADVYLEGVDQFRGWFQSSLLTSVAVQ---NKAPYKKVIVHG 604 (937)
T ss_pred ccchhHHHhccCCceeeeEecCCCcceeecCCC--CCcceeeEEecchhcchHHHHHHHHHHHHh---ccCCchheeeee
Confidence 0134 999998 555444421 012223788899987 5666554332221 357789999999
Q ss_pred ee-ecCCCcccccCCCccCchhhhhcC------CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 590 YL-NYEDGKFSKSRGTGVFGNNAKDTG------LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 590 ~l-~~~G~KMSKS~GN~v~~~d~i~~~------~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
|. +.+|.|||||+||||+|+.+++ | ||+|+||||.+. .....|+.....-+... .+-+.+++| ++
T Consensus 605 FtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~K~R~----T~ 676 (937)
T KOG0433|consen 605 FTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIKFRN----TF 676 (937)
T ss_pred eEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHHHHHh----HH
Confidence 97 6889999999999999999998 6 999999999995 55667899998877643 233345555 66
Q ss_pred HHHHHhcCC------CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCC
Q psy7266 663 SFIEKNYGS------TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKG 734 (1175)
Q Consensus 663 ~~~~~~~~~------~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~ 734 (1175)
+|+..+..+ .+|-.++.-.|+.++.++..+++++++.|++|+|+++++.|..| .++++.|+...|.+.+...
T Consensus 677 RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~ 756 (937)
T KOG0433|consen 677 RFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDK 756 (937)
T ss_pred HHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCC
Confidence 676655432 34555667789999999999999999999999999999999888 5899999999999866442
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 735 SPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 735 ~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
..+. ...++..++.+++..++..++||+||++||+|+.|...
T Consensus 757 -~~s~-~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 757 -VGSE-SRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred -CCcH-HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 1222 23456666788999999999999999999999999843
No 43
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2.5e-57 Score=517.89 Aligned_cols=280 Identities=23% Similarity=0.394 Sum_probs=255.4
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCC-------------Cchh
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL-------------TPRQ 348 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~-------------~p~~ 348 (1175)
+|+|++|||||||.|||||+++.++ +|+++||+||+||+|+|++|||+||+||+.+|++.+. +|.+
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~-~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHH-HHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 5899999999999999999998776 9999999999999999999999999999999999888 8899
Q ss_pred hHHHHHHHHHHHHhhcccccc--ccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCcc
Q psy7266 349 ICDKYFAIHREVYEWFEIDFD--YFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCR 426 (1175)
Q Consensus 349 ~~~~~~~~~~~~~~~lgi~~D--~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~ 426 (1175)
+++++.+.|++++++|||++| .+++|+++.|.+.|+++|.+|+++|+||++..++
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999 5668999999999999999999999999986544
Q ss_pred ccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 427 YEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 427 ~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
+..+|||+++++++++++++++++. .+|+..++++.+||++.+
T Consensus 137 -----------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~-~~p~~~~~~~~~~l~~~~- 179 (312)
T cd00668 137 -----------------------------------RITEQWFFDMPKFKEKLLKALRRGK-IVPEHVKNRMEAWLESLL- 179 (312)
T ss_pred -----------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC-cCChHHHHHHHHHHhCCC-
Confidence 3567999999999999999998875 467788899999996555
Q ss_pred cEeeeccCCCCcccCCCCCCCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHH
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPA 570 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa 570 (1175)
||||||+++||+|+| ++| |||||+ .|.+|||.+ +|++|+||++||..++++
T Consensus 180 d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~d--------i~~~G~D~~~~h~~~~~~ 246 (312)
T cd00668 180 DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPAD--------WHLIGKDILRGWANFWIT 246 (312)
T ss_pred CeEEeccCCCCCcCC-----cccccchhhccHHHHHHcCCCccchhhhhcCCce--------EEEEecchhhhHHHHHHH
Confidence 999999999999999 345 999997 245678887 999999999999999999
Q ss_pred HHHHhCCCcccCeEEEeeceeecCC-CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccc
Q psy7266 571 TLVAAGDQYTKVNHIMATEYLNYED-GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSF 637 (1175)
Q Consensus 571 ~l~~~~~~~~~p~~i~~~g~l~~~G-~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f 637 (1175)
++.+++ +..+|+.+++||||+.+| +|||||+||+|+|.|+++. ||+|++||||++..++++|.+|
T Consensus 247 ~~~~~~-~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 247 MLVALF-GEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEK-YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHhc-CCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHHH-cCcHHHHHHHHhcCCccCCCCC
Confidence 998876 235789999999998887 9999999999999999997 9999999999999999999887
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-56 Score=510.19 Aligned_cols=280 Identities=24% Similarity=0.436 Sum_probs=255.5
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
+|+||+|||||||.+||||+++.++ +|+++||+|++|++|+|++|+|+||+||+..|++.|++|.++++++.+.+++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~-~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHH-HHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998665 999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 362 EWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 362 ~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++|||++|+ +.+|++|.|.+.|+++|.+|+++|+||++...++||
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------------- 126 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------------- 126 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------------
Confidence 999999996 457899999999999999999999999999999998
Q ss_pred CccccccccCCcccCCCCccEEeecccccccc--hhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLEL--PKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
+.++||||++ +++++.+.++++++. .||++.++.+.+|++ |||+++||
T Consensus 127 ----------------------~~~~~~f~~l~~~~~~~~l~~~l~~~~-~~p~~~~~~~~~~l~-------isR~~~wG 176 (314)
T cd00812 127 ----------------------KLLDQWFLKYSETEWKEKLLKDLEKLD-GWPEEVRAMQENWIG-------CSRQRYWG 176 (314)
T ss_pred ----------------------CccceEEEEcCcHHHHHHHHHHHHhcC-cCCHHHHHHHHHHhe-------eeeecCCc
Confidence 2357999999 999999999999874 599999999999994 99999999
Q ss_pred cccCCCCCCCce-EEecCc-------------------------cccccCCCCCCCCcceEEEEeeccccchhH---hHH
Q psy7266 518 IPVPLPGFENKY-SLSSSP-------------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHS---IMF 568 (1175)
Q Consensus 518 ~piP~~~~e~~v-vWfds~-------------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~---~~~ 568 (1175)
+|+|+ ...+ |||||+ .|.+|||.| +|++|+||++||+ ++|
T Consensus 177 ipvP~---~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--------i~v~G~D~i~~h~~~~~~~ 245 (314)
T cd00812 177 TPIPW---TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--------IYIGGKEHAPNHLLYSRFN 245 (314)
T ss_pred CCcCc---ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--------eeecchhHHHHHHHHHHHH
Confidence 99996 2334 999986 144678887 9999999999997 789
Q ss_pred HHHHHHhCC-CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q psy7266 569 PATLVAAGD-QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 569 pa~l~~~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
++++++.++ ...+|+++++||||+.+|+|||||+||+|++.|+++. +|+|++||||++.++ .|.+|+|
T Consensus 246 ~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~-~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 246 HKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKK-YGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHH-hCcHHHHHHHHhcCC--cCCCCCC
Confidence 999998763 1267899999999999999999999999999999996 999999999999877 7999986
No 45
>KOG0437|consensus
Probab=100.00 E-value=8.5e-47 Score=430.38 Aligned_cols=494 Identities=19% Similarity=0.250 Sum_probs=370.9
Q ss_pred hHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccc
Q psy7266 249 SEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327 (1175)
Q Consensus 249 ~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G 327 (1175)
..+||++ |+.|++...|+.+... .++ ..+++|++|.|.||.||.||+||+++.. ..|+..-|+|++|++|+|++|
T Consensus 14 L~eiEk~~q~~W~~e~~fevda~~--el~-~~~~Kff~tfpyPYMNG~LHlGH~FslS-K~eFa~~y~rL~Gk~vLfPfg 89 (1080)
T KOG0437|consen 14 LLEIEKKYQKKWDTEKVFEVDAPN--ELQ-KSKPKFFVTFPYPYMNGRLHLGHAFSLS-KVEFASGYERLQGKNVLFPFG 89 (1080)
T ss_pred HHHHHHHHHHhhhhhhheeccCch--hcc-cccCceeEeccccccCceeeccceeehh-hhHHHHHHHHhcCceEEeecc
Confidence 4589999 9999999999886532 233 3578999999999999999999999765 489999999999999999999
Q ss_pred cCCcchHHHHHHHHc-------CCCc------------------------------------------------------
Q psy7266 328 TDEYGTATETKALEE-------GLTP------------------------------------------------------ 346 (1175)
Q Consensus 328 ~D~~G~~ie~~a~~~-------g~~p------------------------------------------------------ 346 (1175)
++|.|.||...|.+. |.+|
T Consensus 90 FHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~de 169 (1080)
T KOG0437|consen 90 FHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDE 169 (1080)
T ss_pred cccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHH
Confidence 999999998766421 2111
Q ss_pred --------hhhHHHHHHHHHHHHhhccccccccCC--CC--CHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccc
Q psy7266 347 --------RQICDKYFAIHREVYEWFEIDFDYFGR--TS--TPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLA 414 (1175)
Q Consensus 347 --------~~~~~~~~~~~~~~~~~lgi~~D~~~~--T~--~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~ 414 (1175)
..+...|--...+++++||..+||.+. |+ +|.|-.+|+|.|++|.+.|.|..+.+...|||.+++++.
T Consensus 170 EI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCm 249 (1080)
T KOG0437|consen 170 EIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCM 249 (1080)
T ss_pred HhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccc
Confidence 011111223446889999999999762 44 789999999999999999999999999999999999999
Q ss_pred ccee-------------------c---------------------------c-c-C---CCccc----------------
Q psy7266 415 DRFV-------------------E---------------------------G-V-C---PKCRY---------------- 427 (1175)
Q Consensus 415 d~~V-------------------~---------------------------g-~-c---P~c~~---------------- 427 (1175)
|+.- + | | | |.|.|
T Consensus 250 DHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~ 329 (1080)
T KOG0437|consen 250 DHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATE 329 (1080)
T ss_pred ccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeeh
Confidence 8511 0 0 0 1 21110
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 428 -------------------------------------------------------------------------------- 427 (1175)
Q Consensus 428 -------------------------------------------------------------------------------- 427 (1175)
T Consensus 330 raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~k 409 (1080)
T KOG0437|consen 330 RAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKK 409 (1080)
T ss_pred HHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhh
Confidence
Q ss_pred ---------------------cCCCCCcccc--cCCc-------------------------------------ccc---
Q psy7266 428 ---------------------EDARGDQCDG--CGQL-------------------------------------INA--- 444 (1175)
Q Consensus 428 ---------------------~d~~G~~c~~--~g~~-------------------------------------~~~--- 444 (1175)
...+||.|.. |-.+ +..
T Consensus 410 K~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~ 489 (1080)
T KOG0437|consen 410 KPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKP 489 (1080)
T ss_pred cccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhh
Confidence 0123433321 1110 000
Q ss_pred ---------------ccccCCcccCCCCccEEeecccccccch--hHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCc
Q psy7266 445 ---------------IELIQPRCKQCSQAPTVKSSTQLFLELP--KIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKP 507 (1175)
Q Consensus 445 ---------------~el~~~~c~r~~~~~~~~~~~qwfl~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~d 507 (1175)
.|-..++..|||..+++-..+|||+++. .|+....+.++... .+.++.|+.+..-| ++|..
T Consensus 490 ~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~-~f~dEtR~~fE~tL-dWL~~ 567 (1080)
T KOG0437|consen 490 KIKTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLN-TFSDETRNGFEDTL-DWLGQ 567 (1080)
T ss_pred HHHHHHHhcccceeecCcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhh-ccCHHHHHHHHHHH-HHHHh
Confidence 0123457899999999999999999997 59999999999875 47889998887777 57789
Q ss_pred EeeeccCCCCcccCCCCC-------------------------------------CCce---EE----ecCc--------
Q psy7266 508 RCITRDLKWGIPVPLPGF-------------------------------------ENKY---SL----SSSP-------- 535 (1175)
Q Consensus 508 w~ISR~~~WG~piP~~~~-------------------------------------e~~v---vW----fds~-------- 535 (1175)
|.+||....|+.+|++.. .++. || ++.+
T Consensus 568 wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~ 647 (1080)
T KOG0437|consen 568 WACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIP 647 (1080)
T ss_pred hhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCcc
Confidence 999999999999998731 1122 44 3322
Q ss_pred ---------cccccCCCCCCCCcceEEEEeeccccchhHhHHH---HHHHHhCCCcccCeEEEeeceeecCCCcccccCC
Q psy7266 536 ---------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFP---ATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRG 603 (1175)
Q Consensus 536 ---------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~p---a~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~G 603 (1175)
+|++|||.| +++.|||.++.|..||. ..++. ...||+.|.+||||.++++|||||.|
T Consensus 648 ~e~L~~lr~eF~Y~YPiD--------lrvsGKDLi~NHLtfflynHvAl~~---~k~WPkgiraNGHLmLNsEKMSKSTG 716 (1080)
T KOG0437|consen 648 EEALSNLRREFEYFYPID--------LRVSGKDLIPNHLTFFLYNHVALFP---EKKWPKGIRANGHLMLNSEKMSKSTG 716 (1080)
T ss_pred HHHHHHHHHhhhccccee--------eeeccccccccceeEeeeehhhhcc---cccCccceeeCceEEecchhhccccC
Confidence 899999998 89999999988877552 22222 36899999999999999999999999
Q ss_pred CccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhH
Q psy7266 604 TGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDF 683 (1175)
Q Consensus 604 N~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~ 683 (1175)
|+.+.++.++. +|+|+.|+.|+..+..-.|.||......+ -.+ .+.+++.-+-.++... +..-........|+
T Consensus 717 NfmTL~qaieK-Fgad~tRlalAdaGD~veDANF~ea~AnA----aIL-RLyt~~ew~eEm~~~~-s~LrtGp~~~FaDr 789 (1080)
T KOG0437|consen 717 NFMTLEQAIEK-FGADGTRLALADAGDGVEDANFVEANANA----AIL-RLYTYVEWIEEMCENR-SSLRTGPASTFADR 789 (1080)
T ss_pred CeeeHHHHHHH-hCccceeeeeecccCCcccchhHHhcccH----HHH-HHHHHHHHHHHHHhhH-HhhccCchhhHHHH
Confidence 99999999996 99999999999988888899999875422 111 3444443333333311 11001111236799
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccc
Q psy7266 684 LLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSP 762 (1175)
Q Consensus 684 ~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~P 762 (1175)
-+.+.+|.++....++++...|++|+..- ++|...-++|-+.+.- + +.-.+++..+.+...||+|
T Consensus 790 vf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g~-----~---------mh~dLv~r~ietqtlLLaP 855 (1080)
T KOG0437|consen 790 VFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCGE-----G---------MHRDLVFRFIETQTLLLAP 855 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhcc-----c---------ccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999994 8888887888776541 0 0111346778888999999
Q ss_pred hhhHHHHHHHHHcCCCcc
Q psy7266 763 YMPSTASTIASQLGASHL 780 (1175)
Q Consensus 763 fmP~~se~i~~~L~~~~~ 780 (1175)
|.||++|.||+.++.++.
T Consensus 856 i~Ph~aeyiw~~~~~~~~ 873 (1080)
T KOG0437|consen 856 ICPHLAEYIWRTVLKKNF 873 (1080)
T ss_pred cchHHHHHHHHHhccCCc
Confidence 999999999999987643
No 46
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=8.1e-41 Score=408.04 Aligned_cols=351 Identities=16% Similarity=0.099 Sum_probs=262.8
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHH-HcCCCcccccccCCcchHHHHHHHHcCCC-chhhHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR-LVNRNTLYVSGTDEYGTATETKALEEGLT-PRQICDKYFAIHRE 359 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r-~~G~~v~~~~G~D~~G~~ie~~a~~~g~~-p~~~~~~~~~~~~~ 359 (1175)
++|+|.|. |.+.+||||+|++++ .|+++||+| ..||+|.|++|+||||.+|+..|++.|++ +.++|+.|.+.|.+
T Consensus 62 ~~Y~CGPT--vYd~~HiGhart~v~-~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~ 138 (651)
T PTZ00399 62 RWYTCGPT--VYDSSHLGHARTYVT-FDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFE 138 (651)
T ss_pred EEEEeCCC--ccCCcccccchHHHH-HHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 45565555 559999999998665 999999999 89999999999999999999999999999 99999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+++.|||.++.+.+|. .+|.+.|..++.+|+++|++|..+..++|++..
T Consensus 139 d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~------------------------------ 187 (651)
T PTZ00399 139 DMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA------------------------------ 187 (651)
T ss_pred HHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh------------------------------
Confidence 9999999987766544 379999999999999999999987777776652
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-CCcEe-eec-----
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDG-LKPRC-ITR----- 512 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~-l~dw~-ISR----- 512 (1175)
|.+. ...+.+.. |...++....+..++ +.+-+ ++|
T Consensus 188 ----------------------------------f~~~-~~~Yg~L~---p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DF 229 (651)
T PTZ00399 188 ----------------------------------FRKA-GHVYPKLE---PESVADEDRIAEGEGALGKVSGEKRSPNDF 229 (651)
T ss_pred ----------------------------------cccc-hhhHHhhC---hhhcCCHHHHhcccCCccccCcCCCCCccH
Confidence 1111 00011000 000000000111111 11111 233
Q ss_pred -------------cCCCCcccCCCCCCCceEEecCcccccc--CCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC
Q psy7266 513 -------------DLKWGIPVPLPGFENKYSLSSSPSLVQF--LPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD 577 (1175)
Q Consensus 513 -------------~~~WG~piP~~~~e~~vvWfds~~~~~~--wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~ 577 (1175)
.-.||-..|.|+.|+.+ .-..+ .|.| +|..|.|++|.|+-...|.-.+...
T Consensus 230 aLWk~~kpgep~W~SpwG~GrPGWHiECsa------m~~~~lg~~~D--------Ih~gG~DL~FPHHeNEiAQseA~~~ 295 (651)
T PTZ00399 230 ALWKASKPGEPSWDSPWGKGRPGWHIECSA------MASNILGDPID--------IHSGGIDLKFPHHDNELAQSEAYFD 295 (651)
T ss_pred HhhCCCCCCCCCCCCCCCCCCCCchHHHHH------HHHHHcCCcce--------eeccCCCCCCCcchhHHHHHHHhhC
Confidence 23455555555433322 00011 1333 8999999999999988887766542
Q ss_pred CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHH
Q psy7266 578 QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNF 657 (1175)
Q Consensus 578 ~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~ 657 (1175)
..++.+.++++|||+++|+|||||+||+|+|.|+++. ||+|++||||++. +..+|++|+++.+....|.+ +.+.|+
T Consensus 296 ~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~--~~l~n~ 371 (651)
T PTZ00399 296 KHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKD--KVFFNF 371 (651)
T ss_pred CCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHH--HHHHHH
Confidence 2366788888899999999999999999999999996 9999999999975 88899999999998776553 568888
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q psy7266 658 INRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQ 724 (1175)
Q Consensus 658 ~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~ 724 (1175)
+.|+..++...... ....+...|+|++..++.+...+.++| ++|+++.|+..|++|++.+|.|++
T Consensus 372 ~~rl~s~l~~~~~~--~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~ 437 (651)
T PTZ00399 372 FANVKIKLRESELT--SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLN 437 (651)
T ss_pred HHHHHHHHhhcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 88877665432110 111235678999999999999999999 789999999999999999999997
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.3e-41 Score=399.81 Aligned_cols=346 Identities=19% Similarity=0.214 Sum_probs=261.6
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
.+-++.+.|||+|++||||++++++ .|+++||+|++||+|+|++|+|+||.+|...|++.|++|.+++++|.+.|.+++
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~-~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVV-FDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHH-HHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444455556789999999998776 999999999999999999999999999999999999999999999999999999
Q ss_pred hhccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 362 EWFEI-DFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 362 ~~lgi-~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
++||| .+|++.++++ |.+.+++++.+|+++|++|+++..|+||+..-. .+| +
T Consensus 102 ~~Lgi~~~d~~~r~t~--~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~------------------~yg-------~ 154 (463)
T PRK00260 102 DALNVLPPDIEPRATE--HIPEIIELIERLIDKGHAYEADGDVYFDVRKFP------------------DYG-------K 154 (463)
T ss_pred HHcCCCCCCccccccc--cHHHHHHHHHHHHHCCCEEEecCeEEEeccccc------------------ccc-------c
Confidence 99999 6788877774 999999999999999999999999999988511 122 2
Q ss_pred ccc--cccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC---CCCchHHHHHHHHhhcCCCcEeeeccCC
Q psy7266 441 LIN--AIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD---QWSSNARVICKAWLKDGLKPRCITRDLK 515 (1175)
Q Consensus 441 ~~~--~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~wl~~~l~dw~ISR~~~ 515 (1175)
+.. ..++. .|..++. .. .++++. -|.... .|-.-| .-.
T Consensus 155 ls~~~~~~~~------~~~~~~~----------~~--------~K~~~~DF~Lwk~~~---------~~~~~w----~s~ 197 (463)
T PRK00260 155 LSGRNLDELQ------AGARVEV----------AE--------EKRDPLDFALWKAAK---------PGEPSW----ESP 197 (463)
T ss_pred CCCCCHHHHh------ccCcCCc----------cc--------CCCCccccceecCCC---------CCCCCC----CCC
Confidence 110 00000 0100000 00 001100 022110 111123 446
Q ss_pred CCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecC
Q psy7266 516 WGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYE 594 (1175)
Q Consensus 516 WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~ 594 (1175)
||...|.|+-|+.+ .| .+...+ .+ +|..|.|++++|+....|.-.+.. +.++++.++++|+|+.+
T Consensus 198 ~g~grpgWhiecsam~~-------~~lg~~---~D---ih~gG~DlifpHh~neiaqs~a~~-g~p~~~~w~H~g~v~~~ 263 (463)
T PRK00260 198 WGKGRPGWHIECSAMST-------KYLGET---FD---IHGGGADLIFPHHENEIAQSEAAT-GKPFANYWMHNGFVTVN 263 (463)
T ss_pred CCCCCCChhHHHHHHHH-------HhcCCC---cc---eecCccccCCCchHhHHHHHHHhc-CCCcceEEEEccEEccC
Confidence 89999999755433 11 122221 11 899999999999998877655543 35666888999999999
Q ss_pred CCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy7266 595 DGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIP 674 (1175)
Q Consensus 595 G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p 674 (1175)
|+|||||+||+|+|.|+++. ||+|++|||+++ .++.++++|+++.+.... ..++.++|++.++. .
T Consensus 264 G~KMSKS~GN~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~--~~~~rl~~~~~~~~----~------- 328 (463)
T PRK00260 264 GEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSEEALEQAK--KALERLYNALAETA----L------- 328 (463)
T ss_pred CCcccCcCCCCCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCHHHHHHHH--HHHHHHHHHHHHhh----h-------
Confidence 99999999999999999996 999999999997 677899999999876542 33556666555432 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 675 EISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 675 ~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
...|.|++..++.++..+.++| ++|+++.|+..|++|++..|.|++.
T Consensus 329 ----~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 329 ----GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 1356788999999999999999 5999999999999999999999865
No 48
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-41 Score=393.76 Aligned_cols=365 Identities=18% Similarity=0.196 Sum_probs=267.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccccc----------ccCCcchHHHHHHHHcCCCchh
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVS----------GTDEYGTATETKALEEGLTPRQ 348 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~----------G~D~~G~~ie~~a~~~g~~p~~ 348 (1175)
..+++-++++.|+|++++||||+++++. .|+++||+|++||+|.|++ |+|+||.+|...|++.|++|.+
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~-~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e 98 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVF-QDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLE 98 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHH-HHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHH
Confidence 3457888888999999999999998655 9999999999999999997 8999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCcccc
Q psy7266 349 ICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYE 428 (1175)
Q Consensus 349 ~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~ 428 (1175)
++++|.+.|.++++.|||.++.+. +..++|.+.+++++.+|+++|++|+....|+||+.. ||.
T Consensus 99 ~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~------------~~~---- 161 (490)
T PRK14536 99 IAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT------------FPS---- 161 (490)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc------------ccc----
Confidence 999999999999999999996655 333679999999999999999999999999999962 332
Q ss_pred CCCCCcccccCCccc--cccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhh-cCC
Q psy7266 429 DARGDQCDGCGQLIN--AIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLK-DGL 505 (1175)
Q Consensus 429 d~~G~~c~~~g~~~~--~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~-~~l 505 (1175)
||++.. ..++.. |..+ ... .+..+.+... =|.. ..+
T Consensus 162 ---------YG~Ls~~~~~~l~~------g~~v----------~~~---------------~~K~np~DFa-LWK~~~~~ 200 (490)
T PRK14536 162 ---------YGSLASAAVEDLQA------GARI----------EHD---------------TNKRNPHDFV-LWFTRSKF 200 (490)
T ss_pred ---------hhhhcCCCHHHhhc------CCcC----------CCC---------------CCCCCchhch-hcccccCC
Confidence 222210 001100 1000 000 0111111111 1321 233
Q ss_pred CcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEE
Q psy7266 506 KPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHI 585 (1175)
Q Consensus 506 ~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i 585 (1175)
.++.++++..||.+.|.|+-|+.+ .-.+|.... + .+|.+|.|++++|+.+++|+..++. +.++++.+
T Consensus 201 ~~~~~~W~SpWG~GRPGWHIECsa------Ms~~~lg~~-----~-DIH~GG~DliFPHHeneiAqs~a~~-g~~~~~~w 267 (490)
T PRK14536 201 ENHALTWDSPWGRGYPGWHIECSA------MSMKYLGEQ-----C-DIHIGGVDHIRVHHTNEIAQCEAAT-GKPWVRYW 267 (490)
T ss_pred CCCCCcccCCCCCCCCChHHHHHH------HHHHHcCCc-----e-eEEeccccCCCcchhhHHHHHHHhc-CCCcceEE
Confidence 455677889999999999754433 112233322 1 2899999999999999999988864 46888999
Q ss_pred EeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy7266 586 MATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFI 665 (1175)
Q Consensus 586 ~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~ 665 (1175)
+++|+|+++|+|||||+||+|++.|+++.||+++++|||+++ .++.++++|+++.|.+..| ++.++.+++.++.
T Consensus 268 ~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~-----~~~rl~~~~~~~~ 341 (490)
T PRK14536 268 LHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKA-----ARRSLVRRVARVV 341 (490)
T ss_pred EEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 999999999999999999999999999978999999999998 8888999999999986543 3444444444332
Q ss_pred HHhcCCCCC-CCCC----C-hhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q psy7266 666 EKNYGSTIP-EISP----I-HEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQ 721 (1175)
Q Consensus 666 ~~~~~~~~p-~~~~----~-~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 721 (1175)
......... .... . ..+..+...+..+...+.++| ++++++.|+..|+++++..|.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 342 DAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 211111000 0000 0 000011123456678899999 799999999999999987763
No 49
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1.9e-39 Score=385.24 Aligned_cols=346 Identities=15% Similarity=0.161 Sum_probs=254.0
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
++-++.+.|||+|++||||+++++. .|+++||+|++||+|+|++|+|+||.+|+..|++.|++|.++++.|.+.|.+++
T Consensus 21 ~v~~yvcgptvy~~~HiGhar~~v~-~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl 99 (465)
T TIGR00435 21 KVKMYVCGPTVYDYCHIGHARTAIV-FDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDM 99 (465)
T ss_pred cceEEEecCccCCCcccccchHHHH-HHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444444558889999999998665 999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccC-CCCCHHHHHHHHHHHHHHHHcCCEEece-EEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 362 EWFEIDFDYFG-RTSTPQQTEIVQHLFDRVHKAGFTSSAS-VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 362 ~~lgi~~D~~~-~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++|||++|.+. +++ .|.+.+++++.+|+++|++|+.+ ..++||+.|-. .||
T Consensus 100 ~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~-------------------------~yG 152 (465)
T TIGR00435 100 KALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK-------------------------DYG 152 (465)
T ss_pred HHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-------------------------hhc
Confidence 99999999864 555 59999999999999999999998 99999998621 112
Q ss_pred Cccc--cccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC---CCchHHHHHHHHhhcCCCcEeeeccC
Q psy7266 440 QLIN--AIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ---WSSNARVICKAWLKDGLKPRCITRDL 514 (1175)
Q Consensus 440 ~~~~--~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~~wl~~~l~dw~ISR~~ 514 (1175)
++.. ..++. .|..++ ... .++++.. |.... .+-..| +.
T Consensus 153 ~ls~~~~~~~~------~~~~~~----------~~~--------~K~~p~DF~Lwk~~~---------~~~~~w----~s 195 (465)
T TIGR00435 153 KLSKQDLDQLE------AGARVD----------VDE--------AKRNKLDFVLWKSSK---------EGEPKW----DS 195 (465)
T ss_pred cCCCCCHHHHh------cccccC----------ccc--------ccCCCCCceeeCCCC---------CCCCCC----cC
Confidence 1110 00000 000000 000 0011100 21100 111123 45
Q ss_pred CCCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeec
Q psy7266 515 KWGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNY 593 (1175)
Q Consensus 515 ~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~ 593 (1175)
.||...|.|+-|+.+ .| ++.... .+ +|..|.|++++|+.+..++..+.. +.++++.++++|+|+.
T Consensus 196 pwG~grpgWhiecsam~~-------~~lg~~---~D---ih~gG~Dl~fpHhene~aqs~a~~-g~~~~~~~~h~g~v~~ 261 (465)
T TIGR00435 196 PWGKGRPGWHIECSAMND-------KYLGDQ---ID---IHGGGVDLIFPHHENEIAQSEAAF-GKQLAKYWMHNGFLMI 261 (465)
T ss_pred CCCCCCCCcHhHHHHHHH-------HhcCCC---ce---eeccccccccchHHHHHHHHHHhc-CCCCCcEEEEeeEEEe
Confidence 799999999865543 11 122211 11 899999999999999998877753 4677899999999999
Q ss_pred CCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy7266 594 EDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI 673 (1175)
Q Consensus 594 ~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~ 673 (1175)
+|+|||||+||+|++.|+++. ||+|++|||+++ .++.++++|+++.+.+.. ..++.++|++.++..... ...
T Consensus 262 ~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~--~~~~rl~~~~~~~~~~~~----~~~ 333 (465)
T TIGR00435 262 DNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLS-VHYRSPLDFSEELLEAAK--NALERLYKALRVLDTTLA----YSG 333 (465)
T ss_pred cCccccccCCCcCCHHHHHHH-CCHHHHHHHHHh-CCCCCCCccCHHHHHHHH--HHHHHHHHHHHHHHhhhc----ccc
Confidence 999999999999999999996 999999999997 567899999999987653 346677777766533221 100
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q psy7266 674 PEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCN 720 (1175)
Q Consensus 674 p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n 720 (1175)
.... + +......+...+.++| ++++++.|+..|+++++..|
T Consensus 334 ~~~~----~--~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 334 NQSL----N--KFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred cccc----c--cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 0000 0 0112234567788888 79999999999999999888
No 50
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-40 Score=381.44 Aligned_cols=366 Identities=18% Similarity=0.210 Sum_probs=269.3
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccc---------cccc-CCcchHHHHHHHHcCCCchhhH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLY---------VSGT-DEYGTATETKALEEGLTPRQIC 350 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~---------~~G~-D~~G~~ie~~a~~~g~~p~~~~ 350 (1175)
+++-++++.|+|..++||||+|+.+. .|+++||+|++||+|.| ++|+ |+||.+|+..|+++|++|.+++
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~-~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIF-EDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHH-HHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 46788888999999999999997665 99999999999999999 7888 6678899999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCC
Q psy7266 351 DKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDA 430 (1175)
Q Consensus 351 ~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~ 430 (1175)
++|.+.|.++++.|||.++.+.+|. ++|.+.++.++.+|+++|++|.....|+||+.+ | |+
T Consensus 99 ~~~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--~------------~~---- 159 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--F------------KS---- 159 (481)
T ss_pred HHHHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--c------------cc----
Confidence 9999999999999999999988764 589999999999999999999999999999986 1 12
Q ss_pred CCCcccccCCccccccccC-CcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEe
Q psy7266 431 RGDQCDGCGQLINAIELIQ-PRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRC 509 (1175)
Q Consensus 431 ~G~~c~~~g~~~~~~el~~-~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ 509 (1175)
+|... |. ++.+ +.|..|. ++++. +..+.+....-+...++++..
T Consensus 160 YG~ls---~~-----~l~~l~~~~~~~------------v~~~~---------------~K~np~DFaLWK~~~~~~~~~ 204 (481)
T PRK14534 160 YGQMA---GI-----NLNDFKDMSVSR------------VEIDK---------------SKRNKSDFVLWFTNSKFKDQE 204 (481)
T ss_pred hhhhc---CC-----CHHHHhhhccCc------------CCccc---------------CCCCcccchhcCcCCcCCCCC
Confidence 22211 10 0111 1111111 01100 111112222111223567778
Q ss_pred eeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeec
Q psy7266 510 ITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATE 589 (1175)
Q Consensus 510 ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g 589 (1175)
++++..||...|.|+-|+.+ ..++.+|.. . .+|++|.|++++|+.+++|+..+.. +.+++++++++|
T Consensus 205 ~~w~spWG~GrPgWHiECsa-----m~~~~lg~~----~---DIH~GG~DliFPHHene~Aqs~a~~-g~~~~~~W~H~g 271 (481)
T PRK14534 205 MKWDSPWGFGYPSWHLECAA-----MNLEYFKST----L---DIHLGGVDHIGVHHINEIAIAECYL-NKKWCDMFVHGE 271 (481)
T ss_pred CeecCCCCCcCCcHHHHHHH-----HHHHHcCCc----c---eEEecccccCCCcchhHHHHHhhhc-CCCcceEEEEec
Confidence 89999999999998754433 012334432 1 2899999999999999999998864 678899999999
Q ss_pred eeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q psy7266 590 YLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNY 669 (1175)
Q Consensus 590 ~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~ 669 (1175)
||+++|+|||||+||+|++.|+++.+|+++++|||+++ +++.++++|+++.+.+..+ -++++.+.++++...+.. .
T Consensus 272 ~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~--~~~~~~~~~~~~~~~~~~-~ 347 (481)
T PRK14534 272 FLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKI--ARENMLNKLTYFYSSLDQ-F 347 (481)
T ss_pred EEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhhh-c
Confidence 99999999999999999999999878999999999887 7888999999999986532 234444544443322211 0
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q psy7266 670 GSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQ 721 (1175)
Q Consensus 670 ~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 721 (1175)
++...... . +.........+...+.++| ++++++.|+..|+++++..|.
T Consensus 348 ~~~~~~~~--~-~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~ 397 (481)
T PRK14534 348 DLNLLNKD--L-ENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNL 397 (481)
T ss_pred cccccccc--c-ccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 10000000 0 0000011234556888899 799999999999999988775
No 51
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.9e-39 Score=364.31 Aligned_cols=349 Identities=15% Similarity=0.133 Sum_probs=252.2
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+-++|+|.|.|| +++||||+|+++. .|+++||+|++||+|.|++|+|+||++|+..|+++|++|.++|++|++.|.+
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~-~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLA-FDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHH-HHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 335666666655 9999999998655 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceE----EEeeeCCCCcccccceecccCCCccccCCCCCc
Q psy7266 360 VYEWFEI-DFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV----EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQ 434 (1175)
Q Consensus 360 ~~~~lgi-~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~ 434 (1175)
+++.||| ++|.+.||++ +.+.+++++++|.++|++|+... .|+|++.-- ..+|..
T Consensus 86 d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~------------------~~YG~l 145 (384)
T PRK12418 86 DMEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT------------------PQFGYE 145 (384)
T ss_pred HHHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch------------------hhcccc
Confidence 9999997 8999999887 69999999999999999999988 798887731 022321
Q ss_pred ccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC---CCchHHHHHHHHhhcCCCcEeee
Q psy7266 435 CDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ---WSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 435 c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
. +.-+ .++....-.|+...-. .-++++.. |.. +. .+-.-|
T Consensus 146 s---~~~~--~~~~~~~~~~~~~~~~--------------------~~K~~p~DFaLWK~--------~~-~~~~~w--- 188 (384)
T PRK12418 146 S---GYDR--ATMLELFAERGGDPDR--------------------PGKRDPLDALLWRA--------AR-PGEPSW--- 188 (384)
T ss_pred c---CCCH--HHHHhhhcccccCccc--------------------ccCCCcccceeecc--------CC-CCCCcc---
Confidence 0 0000 0000000000000000 00011000 211 10 111224
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL 591 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l 591 (1175)
+..||...|.|+-|+.+ .-.++.... .| +|..|.|++++|+-+..+...+.....++.+.++++|+|
T Consensus 189 -~spwG~GRPGWHiECsa------m~~~~lg~~---~D---IH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l 255 (384)
T PRK12418 189 -PSPFGPGRPGWHIECSA------IALNRLGSG---FD---IQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMI 255 (384)
T ss_pred -cCCCCCCCChhHHHHHH------HHHHHcCCC---cc---cccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEE
Confidence 56799999999755433 112233332 11 899999999999999988877653223677888888999
Q ss_pred ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7266 592 NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS 671 (1175)
Q Consensus 592 ~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~ 671 (1175)
+.+|+|||||+||+|+|.++++.|++++++|||++ ..++.++++|+++.+.+..+ .++.+.|++.+. .
T Consensus 256 ~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~--~l~r~~~~~~~~--------~- 323 (384)
T PRK12418 256 GLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAEA--RLARWRAAAALP--------A- 323 (384)
T ss_pred CCCCCcccCcCCCcCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHHH--HHHHHHHHHhcc--------c-
Confidence 99999999999999999999876677779999998 58888999999999875422 233444433221 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 672 TIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 672 ~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
. . .+..+.+.+.++| ++++++.|+..|+++++..|.|+...+
T Consensus 324 ---~----~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 324 ---G----P-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDA 366 (384)
T ss_pred ---c----c-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 0 0 2234467888888 689999999999999999999987654
No 52
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=9.7e-39 Score=377.54 Aligned_cols=363 Identities=14% Similarity=0.114 Sum_probs=267.8
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
..++-++++.|+|.|.+||||+++.+. .|+++||+|++||+|.|++|+||||++|+..|++.|++|.+++++|.+.|.+
T Consensus 78 ~~~v~~Y~CGpTvYd~~HIGhaR~~V~-~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 78 EGKVGMYVCGVTAYDLSHIGHARVYVT-FDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CCceeEEEeCCccCCCCccccchhhHH-HHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455666677899999999999998665 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+++.|||. +-+.+|...+|.+.+++++++|+++|++|.....|+||+.-- ..+|... +
T Consensus 157 d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f------------------~~YG~Ls---~ 214 (557)
T PLN02946 157 DMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF------------------PEYGKLS---G 214 (557)
T ss_pred HHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc------------------hhhhhcC---C
Confidence 99999998 555666667899999999999999999999999999998831 0123221 0
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-C--CCchHHHHHHHHhhcCCCcEeeeccCCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-Q--WSSNARVICKAWLKDGLKPRCITRDLKW 516 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~wl~~~l~dw~ISR~~~W 516 (1175)
.-+ .++ +.|..++... -++++. + |.... .|-.-| +..|
T Consensus 215 ~~l--~~l------~~g~rv~~~~------------------~K~np~DFaLWK~~k---------~ge~~W----~SPW 255 (557)
T PLN02946 215 RKL--EDN------RAGERVAVDS------------------RKKNPADFALWKAAK---------EGEPFW----DSPW 255 (557)
T ss_pred CCh--hHh------hcCCCCCccc------------------ccCCccccceeccCC---------CCCCCc----cCCC
Confidence 000 000 0111111000 001110 0 32110 121224 5679
Q ss_pred CcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCC
Q psy7266 517 GIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG 596 (1175)
Q Consensus 517 G~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~ 596 (1175)
|...|.|+-|+.+ .-.++.... .| +|..|.|++|.|+-...|...+.. +..+.+++++||||+++|+
T Consensus 256 G~GRPGWHIECSa------Ms~~~lG~~---~D---IH~GG~DL~FPHHENEiAQsea~~-g~~~a~yW~H~G~v~~~G~ 322 (557)
T PLN02946 256 GPGRPGWHIECSA------MSAAYLGHS---FD---IHGGGMDLVFPHHENEIAQSCAAC-CDSNISYWIHNGFVTVDSE 322 (557)
T ss_pred CCCCCcHHHHHHH------HHHHHcCCC---ee---EeccccccCCCcccchHHHHHHHh-CCCCCceeeEeeEEEeCCC
Confidence 9999999855443 112223222 11 899999999999999888877652 4566689999999999999
Q ss_pred cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy7266 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI 676 (1175)
Q Consensus 597 KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~ 676 (1175)
|||||+||+|++.|+++. |++|++||||++ .++.++++|+++.+.... .-+..+.+++.|+...+.+.... ....
T Consensus 323 KMSKSlGN~itl~dll~~-y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~--~~l~~l~~~~~~~~~~l~~~~~~-~~~~ 397 (557)
T PLN02946 323 KMSKSLGNFFTIRQVIDL-YHPLALRLFLLG-THYRSPINYSDVQLESAS--ERIFYIYQTLHDCEESLQQHDST-FEKD 397 (557)
T ss_pred CcCCcCCCcCCHHHHHHh-cCccceeeeeec-cCCCCCcEecHHHHHHHH--HHHHHHHHHHHHHHHHhhhhccc-cccc
Confidence 999999999999999996 999999999998 568899999999987652 33446677777776554322110 0000
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 677 SPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 677 ~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
. .+..+...+..+...+.++| ++|+++.|+..|+++++..|.++..
T Consensus 398 ~---~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~ 444 (557)
T PLN02946 398 S---VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHT 444 (557)
T ss_pred c---cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 0 11112334556678899999 7999999999999999999999864
No 53
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=9.5e-39 Score=365.45 Aligned_cols=343 Identities=16% Similarity=0.150 Sum_probs=248.5
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHH
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIH 357 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~ 357 (1175)
++.-++|||.|.|| +.+||||+|+.+. .|+++||+|++||+|.|++|+|+||++|+..|+++|++|+++|+.|...|
T Consensus 34 ~~~v~~YvCGpTvY--~~~HIGhart~V~-~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f 110 (411)
T TIGR03447 34 GPEAGMYVCGITPY--DATHLGHAATYLT-FDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLF 110 (411)
T ss_pred CCcceEEEeCCccC--CCcccccchHHHH-HHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45667788888777 8999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceE----EEeeeCCCCcccccceecccCCCccccCCCC
Q psy7266 358 REVYEWFEID-FDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV----EQLHCAQCDRFLADRFVEGVCPKCRYEDARG 432 (1175)
Q Consensus 358 ~~~~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G 432 (1175)
.++++.|||. +|.+.||++ |.+.+++++++|+++|+||.... .|+|++..- ..+|
T Consensus 111 ~~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~------------------~~YG 170 (411)
T TIGR03447 111 REDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT------------------EQFG 170 (411)
T ss_pred HHHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch------------------hccc
Confidence 9999999986 888889887 58999999999999999998876 688887730 1223
Q ss_pred CcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-C--CCchHHHHHHHHhhcCCCcEe
Q psy7266 433 DQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-Q--WSSNARVICKAWLKDGLKPRC 509 (1175)
Q Consensus 433 ~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~wl~~~l~dw~ 509 (1175)
... +.-+ .++....-.|+...-. .-++++. + |... +.+-.-|
T Consensus 171 ~Ls---~~~~--~~~~~~~~~~~~~~~~--------------------~~K~~p~DFaLWK~~---------~~~e~~w- 215 (411)
T TIGR03447 171 YES---GYDR--ATMLELFAERGGDPDR--------------------PGKRDPLDALLWRAA---------REGEPSW- 215 (411)
T ss_pred ccc---CCCH--HHHHhhhcccccCccc--------------------ccCCCCcccceeCCC---------CCCCCCc-
Confidence 211 0000 0000000000000000 0000100 0 2211 0111123
Q ss_pred eeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc-ccCeEEEee
Q psy7266 510 ITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY-TKVNHIMAT 588 (1175)
Q Consensus 510 ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~-~~p~~i~~~ 588 (1175)
+-.||...|.|+-|+.+ .-.++.... .| +|..|.|+++.|+.+..+...+.. +. ++++.++++
T Consensus 216 ---~spwG~GRPGWHiECsa------m~~~~lg~~---~D---ih~GG~DLifpHheneiaq~~A~~-g~~~~~~~w~H~ 279 (411)
T TIGR03447 216 ---DSPFGPGRPGWHIECSA------IATNRLGAG---FD---IQGGGSDLIFPHHEFSAAHAEAAT-GVRRMARHYVHA 279 (411)
T ss_pred ---cCCCCCCCChhHHHHHH------HHHHHcCCc---ee---cccCcccccccchHhHHHHHHHhc-CCCCcceEEEEC
Confidence 56799999999855433 112333332 11 799999999999999888777753 34 778999999
Q ss_pred ceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q psy7266 589 EYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKN 668 (1175)
Q Consensus 589 g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~ 668 (1175)
|+|+.+|+|||||+||+|++.++++.|+++|++|||+++ +++.++++|+++.+.+. ...++.+.+++.+.
T Consensus 280 g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~~a--~~~l~rl~~~~~~~------- 349 (411)
T TIGR03447 280 GMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEA--EARLARWRAALAAT------- 349 (411)
T ss_pred CEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHHHH--HHHHHHHHHHHhhc-------
Confidence 999999999999999999999998877999999999984 78889999999998753 22333444433221
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q psy7266 669 YGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCN 720 (1175)
Q Consensus 669 ~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n 720 (1175)
. .+ .+..+...+.++| +++++..|+..|+++++..|
T Consensus 350 -~--~~-------------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n 386 (411)
T TIGR03447 350 -D--AP-------------DATDLIARLRQHLANDLDTPAALAAVDNWAAAAL 386 (411)
T ss_pred -c--cc-------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 0 00 1234456677888 78999999999999998765
No 54
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-37 Score=362.48 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=256.1
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
..+++-++++.|+|.+++||||+|+.+. .|+++||+|++||+|.|++|+||||.+|...|++.|++|.+++++|.+.|.
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~-~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~ 323 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVV-FDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMH 323 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHH-HHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3567888888999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEece-EEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS-VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++++.|||.++.+ +|...+|.+.++.++.+|+++|++|+.. ..|+||+.+-. .+|...
T Consensus 324 ~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~------------------~YG~LS-- 382 (699)
T PRK14535 324 EDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFA------------------AYGQLS-- 382 (699)
T ss_pred HHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccc------------------cccccc--
Confidence 9999999999887 4444589999999999999999999874 48999998511 223221
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC---CCCchHHHHHHHHhhcCCCcEeeeccC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD---QWSSNARVICKAWLKDGLKPRCITRDL 514 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~wl~~~l~dw~ISR~~ 514 (1175)
|.-+ .++ +.|..++. .. .++++. -|.... .|-.-| +.
T Consensus 383 -~~~~--~~l------~~g~rve~----------d~--------~Krnp~DFaLWK~sk---------~Gep~W----~S 422 (699)
T PRK14535 383 -GKSL--DDL------RAGERVEV----------DG--------FKRDPLDFVLWKAAK---------AGEPAW----ES 422 (699)
T ss_pred -CCCh--HHh------cCCCcccc----------cc--------ccCCccccceeccCC---------CCCCCc----cC
Confidence 0000 011 11111110 00 011110 032210 121224 66
Q ss_pred CCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHh-CCC--------------c
Q psy7266 515 KWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAA-GDQ--------------Y 579 (1175)
Q Consensus 515 ~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~-~~~--------------~ 579 (1175)
.||-..|.|+-|+.+ .-.++.... .| +|..|.|+++.|+-.-.|...++ |.. .
T Consensus 423 PWG~GRPGWHIECSA------Ms~~~LG~~---~D---IHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~ 490 (699)
T PRK14535 423 PWGNGRPGWHIECSA------MSENLFGDT---FD---IHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIA 490 (699)
T ss_pred CCCCCCCchHHHHHH------HHHHHcCCc---ce---eECCccccCCCCCccHHHHHHHhhCCCccccccccccccccc
Confidence 799999999755433 122333332 11 89999999999999888877664 210 0
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
++.++++++|||+++|+|||||+||+|++.++++. ||+|++|||+++ +++.++++|+++.+.+. ...++.+.+++.
T Consensus 491 ~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~-ygpdalRl~lLs-shYRspL~fS~e~Le~A--k~~l~Rl~~~l~ 566 (699)
T PRK14535 491 SHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ-YDPEVVRFFILR-AHYRSPLNYSDAHLDDA--KGALTRLYTTLK 566 (699)
T ss_pred ccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh-CCHHHHHHHHHc-CCCCCCCCcCHHHHHHH--HHHHHHHHHHHH
Confidence 25689999999999999999999999999999996 999999999998 67889999999988753 222334444333
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQY 722 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~y 722 (1175)
++. .. . . .+...+..+...+.++| ++++++.|+..|+++++..|.+
T Consensus 567 ~~~-------~~-~--~-------~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 567 NTP-------AA-E--F-------MLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKT 613 (699)
T ss_pred hhh-------hc-c--c-------hhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 321 00 0 0 01123445667888999 7999999999999999988865
No 55
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=1.3e-34 Score=355.53 Aligned_cols=480 Identities=17% Similarity=0.214 Sum_probs=297.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------CCChH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS---------KFDTK 71 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---------p~~~~ 71 (1175)
|+||+.+.++ +.+++++|.+.|++|+.+. .+|.|+||+|+.+||..|+||.||++||. |.++.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~-------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~ 74 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP-------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAF 74 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee-------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHH
Confidence 5899988775 6789999999999999865 36899999998889999999999999986 45677
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCc
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLL 150 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~ 150 (1175)
+++++++|+.|..... ....+...|+.||.+|+ ++||+|+++|+|||++|+.+..+..........
T Consensus 75 erAqV~qWL~~~~~~~-------------~~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~ 141 (722)
T PLN02907 75 ESSQVDEWLDYAPTFS-------------SGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKS 141 (722)
T ss_pred HHHHHHHHHHHHhhcc-------------cHHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhccccc
Confidence 8999999999876422 11356788999999999 999999999999999999986642111111235
Q ss_pred ccchhHHHHHHHHhcCHH--HHHHHHHHHHHhcccccccCchhhhhhhhhhhhhcCcccccccccccccccccccCCCcc
Q psy7266 151 SSYTNITPWYDRISKLPQ--VQKALKTWTEVLKGSANDVGSLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPES 228 (1175)
Q Consensus 151 ~~~p~L~~W~~rl~~~P~--~~~~l~~~~~~~kg~~~~~~~~~~~~~k~~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 228 (1175)
..||||.+|+++|.++|. |+.++..+....+ +. .|....++... ..
T Consensus 142 ~~yPnL~RW~erI~arPs~~~~~~~~a~~~~~~---------------------~~----------~~~~~~~~~~~-~~ 189 (722)
T PLN02907 142 KKYQNLVRWFNSISAEYSDILNEVTAAYVGKRG---------------------AG----------KPAAAKSKEKV-AD 189 (722)
T ss_pred ccCHHHHHHHHHHHhCCCcchhhHHHHHHHhhc---------------------cc----------cccccchhhhc-cc
Confidence 789999999999999999 6766666621111 00 00000000000 00
Q ss_pred ccCCCccccccccccCCCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHh
Q psy7266 229 KAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSA 308 (1175)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~ 308 (1175)
+ .... . ....+.+...+|.. ...-++|..+|.|||+|||||++++++ +
T Consensus 190 ~-~~~~-~----------------------------~~~~~~~~~~L~~~-~~~~v~tRFaPsPtG~LHiG~ar~al~-n 237 (722)
T PLN02907 190 A-GKAD-G----------------------------AKDKGSFEVDLPGA-EEGKVCTRFPPEPSGYLHIGHAKAALL-N 237 (722)
T ss_pred c-ccch-h----------------------------ccccccccccCccC-CCCceEEeeCCCCCCcccHHHHHHHHH-H
Confidence 0 0000 0 00011112234432 233489999999999999999999887 9
Q ss_pred HHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHH
Q psy7266 309 DVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFD 388 (1175)
Q Consensus 309 D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~ 388 (1175)
..+||.+ .|. |+.-+ ++++|.....+|.+.|.++++|||+.+|..+++++ |.+..++...
T Consensus 238 ~~~Ar~~--~G~---~iLR~-------------eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~--r~~~y~~~a~ 297 (722)
T PLN02907 238 QYFARRY--KGK---LIVRF-------------DDTNPSKESDEFVENILKDIETLGIKYDAVTYTSD--YFPQLMEMAE 297 (722)
T ss_pred HHHHHHh--CCE---EEEEe-------------cCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccc--cHHHHHHHHH
Confidence 9999843 333 33333 45788888899999999999999999997767765 9999999999
Q ss_pred HHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeeccccc
Q psy7266 389 RVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLF 468 (1175)
Q Consensus 389 ~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwf 468 (1175)
+|+++|++|... |+.. ++... + ..|.-| .| |.- +++.
T Consensus 298 ~Li~~G~aY~~~-----~~~~-------~~~~~-~------~~~~~~---------------~~-R~~-~~ee------- 334 (722)
T PLN02907 298 KLIKEGKAYVDD-----TPRE-------QMRKE-R------MDGIES---------------KC-RNN-SVEE------- 334 (722)
T ss_pred HHHHcCCeeecC-----CCHH-------HHHHH-H------hcCCCC---------------Cc-cCC-CHHH-------
Confidence 999999999621 2110 11000 0 001000 01 100 0000
Q ss_pred ccchhHHHHHHHHHHhcCCCCCchHHHHHH-HHhhcCCCcEeeeccCCCCcccCCCCCCCce-EEecCccccccCCCCCC
Q psy7266 469 LELPKIEDKLQSWVSETSDQWSSNARVICK-AWLKDGLKPRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFLPTATP 546 (1175)
Q Consensus 469 l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~wl~~~l~dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~ 546 (1175)
++..|.+ ...........-.|..+. ..-...++||.+-|... .+-|-.+ +++ +|.. | -+-....
T Consensus 335 -~~~~~~~----m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~--~~h~~~g--d~~~~~Pt---Y--~fa~~vd 400 (722)
T PLN02907 335 -NLRLWKE----MIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNP--TPHHRIG--SKYKVYPT---Y--DFACPFV 400 (722)
T ss_pred -HHHHHHH----HhcccccCCCeEEEEEcccCCCCCCcccCEEEEecC--CcccccC--Cccceeec---c--CCceEEE
Confidence 0000000 000000000111110000 00012578898888753 2222111 111 1110 0 0111000
Q ss_pred CCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccC-------CCc--------cC
Q psy7266 547 QSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSR-------GTG--------VF 607 (1175)
Q Consensus 547 ~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~-------GN~--------v~ 607 (1175)
+....+.|++ |.|++. .|.. ++.++| +..| ++...++++.+|.||||++ |-+ .+
T Consensus 401 D~~~gIThvlRg~e~~~~t~~q~~----l~~~lg--~~~p-~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt 473 (722)
T PLN02907 401 DALEGVTHALRSSEYHDRNAQYYR----ILEDMG--LRKV-HIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPT 473 (722)
T ss_pred cccCCCceEeecHhhhhChHHHHH----HHHHcC--CCCC-eeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCccc
Confidence 1222334555 777653 3333 334444 5555 6677778999999999999 422 13
Q ss_pred chhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHH
Q psy7266 608 GNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSEL 650 (1175)
Q Consensus 608 ~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l 650 (1175)
...+.++||.++++|-|+...+....+..|+|+.+.. .|++.
T Consensus 474 ~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~-~nr~~ 515 (722)
T PLN02907 474 VQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT-INKKI 515 (722)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHH-HHHHH
Confidence 4578888999999999999988888899999998864 34443
No 56
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-33 Score=320.42 Aligned_cols=355 Identities=18% Similarity=0.216 Sum_probs=260.5
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
..++-+..+.|+|..++||||+|+.+. -|++.||++.+||.|.|+..+.|...+|...|.+.|.+..++++.|.+.|.+
T Consensus 20 ~~~V~mYvCGpTVYd~~HIGhaRt~V~-fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~ 98 (464)
T COG0215 20 PGKVKMYVCGPTVYDYAHIGHARTYVV-FDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFE 98 (464)
T ss_pred CCeEEEEecCCccCCccccccCcceeh-HHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344888888999999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCEEec-eEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 360 VYEWFEI-DFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA-SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 360 ~~~~lgi-~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
+++.||| ..|...+.++ |...+.++.++|.++|++|.. ...|+|++..=. .+|...
T Consensus 99 D~~aL~v~~p~~~PraTe--~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~------------------~YG~LS-- 156 (464)
T COG0215 99 DMDALNVLPPDIEPRATE--HIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK------------------DYGKLS-- 156 (464)
T ss_pred HHHHhCCCCCcccCcHhh--CHHHHHHHHHHHHHCCceEEecCCcEEEecccch------------------hhHhhc--
Confidence 9999999 5687777664 999999999999999999998 678999887411 122110
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
|+. .-.++. ...|.+.... +..+.=|+ -|... +.|-..| +..||
T Consensus 157 -~~~-~le~l~--~gar~~~~~~-Krnp~DFv------------------LWK~s---------k~gEp~W----~SPWG 200 (464)
T COG0215 157 -GRD-SLEELQ--AGARVEVDEE-KRNPLDFV------------------LWKAA---------KPGEPSW----DSPWG 200 (464)
T ss_pred -CCC-ChhHHh--hccccccccc-cCCchhhe------------------eeccC---------CCCCCCC----CCCCC
Confidence 000 000000 0001100000 00000000 02210 1233334 67899
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCc
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGK 597 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~K 597 (1175)
-..|.|+-|+.+ .-.++.... .| +|-.|.|.++.|+-.-.|...+.....++.++++++|||+++|+|
T Consensus 201 ~GRPGWHIECSa------M~~~~LG~~---~D---IHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geK 268 (464)
T COG0215 201 KGRPGWHIECSA------MSTKYLGET---FD---IHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEK 268 (464)
T ss_pred CCCCchhHHHHH------HHHHHhCCC---cc---eecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcC
Confidence 999999866544 111222221 11 899999999999999989888876335668999999999999999
Q ss_pred ccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy7266 598 FSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEIS 677 (1175)
Q Consensus 598 MSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~ 677 (1175)
||||+||+|+..|++++ |++.++||+|++ +.+.++++||++.+.+..+ .+..+.|++.++..... . ..
T Consensus 269 MSKSLGNfiti~d~l~~-~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~--~l~rl~~~~~~~~~~~~----~----~~ 336 (464)
T COG0215 269 MSKSLGNFITVRDLLKK-YDPEVLRLFLLS-SHYRSPLDFSEELLEEAKK--ALERLYNALRRLRDLAG----D----AE 336 (464)
T ss_pred cccccCCeeEHHHHHhh-cCHHHHHHHHHH-HHhCCccccCHHHHHHHHH--HHHHHHHHHHHHHhhcc----c----cc
Confidence 99999999999999996 999999999998 7888999999999876432 34455555554432111 0 00
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 678 PIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 678 ~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
.. .+......+.++| ++|++..|+..|+++++..|..++.
T Consensus 337 ~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~ 377 (464)
T COG0215 337 LA--------DLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE 377 (464)
T ss_pred cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhc
Confidence 00 3445666788888 7999999999999999887765543
No 57
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-33 Score=336.86 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=246.6
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
.+++++|+.+.|||||++||||+|++++ +|+++|++|+.||+|.++.|+||+|+++...+...+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~ii-gD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVI-GDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHH-HHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999887 999999999999999999999999999999988888888999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEE-eceEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTS-SASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy-~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++|++|||++|.|.++++..|...+++++..|.++|++| +.+..++++ ++.+ |+
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~-------------------~~---- 242 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEF-------------------GD---- 242 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhh-------------------CC----
Confidence 999999999998888887778889999999999999999 654444333 2111 10
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
..+.+.+.+ ++.+....+.+.....+ +.|
T Consensus 243 ------------------~~~~vl~ks---------------------dG~~~Y~t~Dia~~~~k-------~~~----- 271 (507)
T PRK01611 243 ------------------DKDRVLIKS---------------------DGTYTYFTRDIAYHLYK-------FER----- 271 (507)
T ss_pred ------------------CCCeEEEEC---------------------CCCccchHHHHHHHHHH-------Hhh-----
Confidence 001111111 11122233333222211 111
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccc-hhHhHHHHHHHHhCCCcccCe-EEEee---ceee
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP-FHSIMFPATLVAAGDQYTKVN-HIMAT---EYLN 592 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~-fh~~~~pa~l~~~~~~~~~p~-~i~~~---g~l~ 592 (1175)
+ + .++++.|.||.. |..++ +.+..+| +.++. .++.| |++.
T Consensus 272 ---~----------------------d------~~i~V~g~~q~~hf~~~~--~~~~~lg--~~~~~~~~~~h~~~glv~ 316 (507)
T PRK01611 272 ---F----------------------D------RVIYVVGADHHGHFKRLK--AALKALG--YDPDALEVLLHQMVGLVR 316 (507)
T ss_pred ---c----------------------C------EEEEEECCChHHHHHHHH--HHHHHcC--CCcccceEEEEEEEEeeE
Confidence 0 0 247888988763 33333 4455555 33332 33444 6664
Q ss_pred -cCCCcccccCCCccCchhhhhcCCCc----------------hhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHH
Q psy7266 593 -YEDGKFSKSRGTGVFGNNAKDTGLPA----------------DIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655 (1175)
Q Consensus 593 -~~G~KMSKS~GN~v~~~d~i~~~~ga----------------DalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~ 655 (1175)
.+|+|||||+||+|+++|+++..+|+ |++||++++. ..++|++|+|+.+.+..++... .+.
T Consensus 317 ~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~~~~~~~~~~~-yvq 394 (507)
T PRK01611 317 GGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDLALSFEGNNPP-YVQ 394 (507)
T ss_pred CCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHHHHhhcCCCcH-HHH
Confidence 57889999999999999999965888 9999999986 5678999999998654332222 233
Q ss_pred HHHHHHHHHHHHhcC-CCCCC-CCC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Q psy7266 656 NFINRALSFIEKNYG-STIPE-ISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQ 726 (1175)
Q Consensus 656 n~~~r~~~~~~~~~~-~~~p~-~~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~ 726 (1175)
....|+.+++.+... +..+. ..+ ++.|+||+..+..+...+.+++++++++.+++++++|++.+|.|++.+
T Consensus 395 Ya~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~ 468 (507)
T PRK01611 395 YAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 333488888766421 11111 113 678999999999999999999999999999999999998888888765
No 58
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.5e-32 Score=290.85 Aligned_cols=194 Identities=20% Similarity=0.175 Sum_probs=162.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
++.++|+|.|.|| |.+||||+++.++ +|+++||+|++|++|+|++|+|+||+||+..|++.|++|.++++++.+.|+
T Consensus 19 ~~~~~y~~gpt~y--~~~HiGH~r~~v~-~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~ 95 (213)
T cd00672 19 GLVTMYVCGPTVY--DYAHIGHARTYVV-FDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFF 95 (213)
T ss_pred CCceEEEeCCccC--CCcccccchhHHH-HHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4556777777666 7899999998766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccc-cccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDF-DYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++++.|||++ |.|.|| |
T Consensus 96 ~~~~~l~i~~~d~~~rt------------------------------W-------------------------------- 113 (213)
T cd00672 96 EDMKALNVLPPDVVPRV------------------------------W-------------------------------- 113 (213)
T ss_pred HHHHHcCCCCCCcceee------------------------------h--------------------------------
Confidence 9999999999 888888 2
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
++.++.+ ...++.
T Consensus 114 ------------------------------h~ec~am----------------------~~~~lg--------------- 126 (213)
T cd00672 114 ------------------------------HIECSAM----------------------AMKYLG--------------- 126 (213)
T ss_pred ------------------------------hHHHHHH----------------------HHHHcC---------------
Confidence 1211111 112231
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCc
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGK 597 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~K 597 (1175)
-|.| +|..|.|++++|..+..++..+.. +.++++.+++.|+|+.+|+|
T Consensus 127 -----------------------~~~d--------ih~~G~Dl~fpH~~~~~a~~~a~~-g~~~~~~~~h~~~v~~~g~K 174 (213)
T cd00672 127 -----------------------ETFD--------IHGGGVDLIFPHHENEIAQSEAAT-GKPFARYWLHTGHLTIDGEK 174 (213)
T ss_pred -----------------------CCcc--------EEeecCCCCcChHHHHHHHHHHHh-CCCCCcEEEEEEEEeccCcc
Confidence 1233 899999999999999988776643 33667888888999999999
Q ss_pred ccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q psy7266 598 FSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFS 638 (1175)
Q Consensus 598 MSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~ 638 (1175)
||||+||+|++.|+++. ||+|++|||+++.. +.++++|+
T Consensus 175 MSKs~Gn~v~~~dll~~-~~~da~R~~~l~~~-~~~~l~f~ 213 (213)
T cd00672 175 MSKSLGNFITVRDALKK-YDPEVLRLALLSSH-YRSPLDFS 213 (213)
T ss_pred hhhcCCCccCHHHHHHH-cCHHHHHHHHHhCC-cCCCCCCC
Confidence 99999999999999995 99999999999844 66788885
No 59
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.97 E-value=2.5e-30 Score=292.78 Aligned_cols=272 Identities=16% Similarity=0.267 Sum_probs=190.4
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCc------------------chHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEY------------------GTATETKALE 341 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~------------------G~~ie~~a~~ 341 (1175)
+.+++|+++++ |||.+||||+++.+. +|+++||+|++|++|.|++|+|+| |.|+...++.
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~-~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVIT-ADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHH-HHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 35699999995 999999999998655 999999999999999999999999 8888888999
Q ss_pred cCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc
Q psy7266 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV 421 (1175)
Q Consensus 342 ~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~ 421 (1175)
.|+.+ +++++|.+.|++.|+.|||++|++++|....+..+.+.++..|.+++.|..--.+. .+.-+.+.|.
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~-----~~~~~~~~~~--- 166 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEY-----RGRELQETWY--- 166 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHh-----cCCccCCCce---
Confidence 99887 99999999999999999999998888888888899999999999999985321110 0000111111
Q ss_pred CCCccccCCCCCcccccCCccccc---c---c-cCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHH
Q psy7266 422 CPKCRYEDARGDQCDGCGQLINAI---E---L-IQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNAR 494 (1175)
Q Consensus 422 cP~c~~~d~~G~~c~~~g~~~~~~---e---l-~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~ 494 (1175)
.+-..|++||++..+. + - +...| .||+.-+.-... .
T Consensus 167 --------P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~-------------------g--------- 209 (353)
T cd00674 167 --------PFMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRT-------------------G--------- 209 (353)
T ss_pred --------eeeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecC-------------------C---------
Confidence 1223456666432111 0 0 11244 366544422110 0
Q ss_pred HHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccch---hHhHHHHH
Q psy7266 495 VICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPF---HSIMFPAT 571 (1175)
Q Consensus 495 ~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~f---h~~~~pa~ 571 (1175)
++ .+.|-+..|.- |+-.+ |. +-+.|+||... +.... .+
T Consensus 210 --------~~--------KL~Wr~dW~~r----------------W~~l~-----Vd-~E~~GkDh~~~ggs~~~~~-~i 250 (353)
T cd00674 210 --------RG--------KLTWRVDWPMR----------------WAILG-----VD-FEPFGKDHASAGGSYDTGK-EI 250 (353)
T ss_pred --------Cc--------ccCCCCCchhh----------------hhhcC-----CC-EEeeCccccccccHHHHHH-HH
Confidence 00 12333333321 22111 21 66889999744 33322 22
Q ss_pred HH-HhCCCcccCeEEEeeceeecCCC-cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHH
Q psy7266 572 LV-AAGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL 642 (1175)
Q Consensus 572 l~-~~~~~~~~p~~i~~~g~l~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~ 642 (1175)
+. .+ +..+|.+ ++||||+.+|+ |||||+||+|+|.|+++. +++|++|||+++......|++|+++..
T Consensus 251 ~~~il--g~~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~~~l~~~~~~~~i~Fd~~~~ 319 (353)
T cd00674 251 AREIF--GGEPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYARRKNPEKHIGFDLDIL 319 (353)
T ss_pred HHHHh--CCCCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHHHHHhCCCCCCCCCcChhHH
Confidence 22 33 3456644 77899988776 999999999999999997 999999999998664678999998643
No 60
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=8.8e-31 Score=284.77 Aligned_cols=286 Identities=20% Similarity=0.224 Sum_probs=196.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
..+++-+.++.|+|...+||||+|+.++ .|++.||++..||+|.+++++.|...+|..+|++.|+++.++++.|.+.|.
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~-~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~ 83 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVF-FDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFF 83 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHH-HHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeee-HHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4567888888899999999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccc-cccCCCCCHHHHHHHHHHHHHHHHcCCEEece-EEEeeeCCCCcccccceecccCCCccccCCCCCccc
Q psy7266 359 EVYEWFEIDF-DYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS-VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCD 436 (1175)
Q Consensus 359 ~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~ 436 (1175)
+++++|||.. |.+.+.+ +|.+.+.++.++|+++|++|... ..|+|++.. + ..+|....
T Consensus 84 ~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~--~----------------~~YG~Ls~ 143 (300)
T PF01406_consen 84 EDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK--F----------------PDYGKLSN 143 (300)
T ss_dssp HHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG--S----------------TTTTTTTT
T ss_pred HHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc--c----------------cccccccc
Confidence 9999999976 5555655 49999999999999999999999 999998772 0 12222110
Q ss_pred ccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHH---HhcCCC---CCchHHHHHHHHhhcCCCcEee
Q psy7266 437 GCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWV---SETSDQ---WSSNARVICKAWLKDGLKPRCI 510 (1175)
Q Consensus 437 ~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~---~~~~~~---~~~~~~~~~~~wl~~~l~dw~I 510 (1175)
.+++++........ ++++.. |.... .+- +
T Consensus 144 --------------------------------~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~---------~~e----~ 178 (300)
T PF01406_consen 144 --------------------------------QDLEDLEAGARVEVDYEKRNPRDFALWKAAK---------PGE----P 178 (300)
T ss_dssp ---------------------------------SHHHHHHCHHHTT-TTSSSTT-EEEEEE-----------TTS-----
T ss_pred --------------------------------cchhhHHhhhhcccccccCCCcceeeeeccc---------ccC----C
Confidence 11111111110000 001000 21100 111 2
Q ss_pred eccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeece
Q psy7266 511 TRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEY 590 (1175)
Q Consensus 511 SR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~ 590 (1175)
+-+-.||-..|.|+-|+.+ .-.++.... .| +|..|.|+++.|+-...|...+.. +.++.++++++|+
T Consensus 179 ~w~spwG~GRPGWHiECsa------m~~~~lG~~---~D---IH~GG~DL~FPHHENEiAqs~a~~-g~~~a~~W~H~g~ 245 (300)
T PF01406_consen 179 SWDSPWGKGRPGWHIECSA------MSMKYLGDT---FD---IHGGGIDLIFPHHENEIAQSEAAT-GKPFANYWMHNGH 245 (300)
T ss_dssp -B--TTSSEEE-HHHHHHH------HHHHHHTTS---EE---EEEEEGGGTTTHHHHHHHHHHHHH-SS-SEEEEEEE--
T ss_pred cccCCCccCcCceeeehHH------HHHHHcCCC---ce---EEccccccCCCCccchHHHHHHhh-CchHHHHHHHHHH
Confidence 2256799999988643322 111222221 11 899999999999999988887764 3677899999999
Q ss_pred eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q psy7266 591 LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATK 645 (1175)
Q Consensus 591 l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~ 645 (1175)
|+++|+|||||+||+|++.|+++. |+++++||+|++ ..+.++++|+++.+.+.
T Consensus 246 l~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 246 LNVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLS-THYRKPLNFSEENLEEA 298 (300)
T ss_dssp EEETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHT-S-TTS-EEE-HHHHHHH
T ss_pred HhhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhc-CCCCCccccCHHHHHHh
Confidence 999999999999999999999985 999999999998 78889999999998753
No 61
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.97 E-value=5.2e-29 Score=304.62 Aligned_cols=366 Identities=14% Similarity=0.162 Sum_probs=258.6
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH---HcCC--------Cc--
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL---EEGL--------TP-- 346 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~---~~g~--------~p-- 346 (1175)
+++++|..+.|||+|++||||+|++++ +|+++|++++.||+|.-...+.|+|..+-..+. ..+. .|
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~-gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAII-GDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHH-HHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 568999999999999999999999888 999999999999999988888888876654432 1110 00
Q ss_pred -----------------------------------------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHH
Q psy7266 347 -----------------------------------------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385 (1175)
Q Consensus 347 -----------------------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 385 (1175)
+.+++...+.|+++|++|||.||.|..-.+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 112233446788999999999998765444457778899
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecc
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSST 465 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~ 465 (1175)
++..|.++|++|.+ ..++.+.. .+|+. + .+.+.+
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~---------------------~~~d~---------------~------~~~vl~--- 303 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLT---------------------LFGDK---------------D------KDRVLQ--- 303 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEcc---------------------cccCC---------------C------CCeEEE---
Confidence 99999999999966 44433211 11100 0 011111
Q ss_pred cccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCC
Q psy7266 466 QLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTAT 545 (1175)
Q Consensus 466 qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~ 545 (1175)
++++.+..-.+.+.....+ +.| ..|
T Consensus 304 ------------------ksDGt~~Y~t~DiA~~~~k-------~~~-----------------------------~~d- 328 (566)
T TIGR00456 304 ------------------KSDGTYLYLTRDIAYHLDK-------LER-----------------------------GFD- 328 (566)
T ss_pred ------------------ECCCCceechhhHHHHHHH-------Hhc-----------------------------CCC-
Confidence 1112244444444333322 001 011
Q ss_pred CCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccCCCccCch----------------
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGN---------------- 609 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~---------------- 609 (1175)
.++++.|.||...-..++ ++++++| +++|..+.+|+|.++.|.|||||+||+|+++
T Consensus 329 -----~iI~V~g~~q~~h~~~v~-~~l~~lG--~~~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~ 400 (566)
T TIGR00456 329 -----KMIYVWGSDHHLHIAQFF-AILEKLG--FYKKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITI 400 (566)
T ss_pred -----EEEEEecCcHHHHHHHHH-HHHHHcC--CCCCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHh
Confidence 358899999864333333 5667775 4578899999999889999999999999998
Q ss_pred -------hhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC
Q psy7266 610 -------NAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE-----IS 677 (1175)
Q Consensus 610 -------d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~-----~~ 677 (1175)
++++. +|.|++|||+++.. ...|.+|+|+.+.+ .|.++.+.++|.+.|+.+++.+...+.++. ..
T Consensus 401 ~~~~~~~~~~~~-vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~ 477 (566)
T TIGR00456 401 KNDLEEEDVADA-VGIGAVRYFDLSQN-RETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSL 477 (566)
T ss_pred cCCccHHHHHHH-hcccceeeHHhhcC-CCCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHhcccccccccccccCC
Confidence 55554 88999999999977 57899999998776 478889999999999999998764332221 12
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7266 678 PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLS 757 (1175)
Q Consensus 678 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~ 757 (1175)
.++.+..++..+..+...+.+++++++++.+++.+++++..+|.|++.+ |++..+++.....+-.++..+..+|...+
T Consensus 478 ~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL 555 (566)
T TIGR00456 478 LEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGL 555 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566788999999999999999999999999999999999999999987 45543322111111222333445555555
Q ss_pred HHc
Q psy7266 758 LLL 760 (1175)
Q Consensus 758 ~lL 760 (1175)
.||
T Consensus 556 ~lL 558 (566)
T TIGR00456 556 QLL 558 (566)
T ss_pred Hhc
Confidence 544
No 62
>KOG2007|consensus
Probab=99.97 E-value=1.3e-28 Score=274.15 Aligned_cols=367 Identities=18% Similarity=0.147 Sum_probs=268.6
Q ss_pred CCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHH-HcCCCcccccccCCcchHHHHHHH--HcCCCchhhHH
Q psy7266 275 LPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR-LVNRNTLYVSGTDEYGTATETKAL--EEGLTPRQICD 351 (1175)
Q Consensus 275 ~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r-~~G~~v~~~~G~D~~G~~ie~~a~--~~g~~p~~~~~ 351 (1175)
.|. +.+++-.++..|+|...-|||||++++ +-|++.||++ .-||+|.|++++.+...+|...|+ ..+..|..+.+
T Consensus 49 ip~-~~~~v~wY~CGpTvYD~SHmGHArsYV-sfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~ 126 (586)
T KOG2007|consen 49 IPN-NGNKVTWYICGPTVYDSSHMGHARSYV-SFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSE 126 (586)
T ss_pred eeC-CCCeEEEEEecCcccchhhhhhhhhhh-hHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHH
Confidence 344 445588888899999999999999766 5999999999 779999999999999999999997 23444433333
Q ss_pred ---HHHHHHHHHHhhcccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccc
Q psy7266 352 ---KYFAIHREVYEWFEID-FDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRY 427 (1175)
Q Consensus 352 ---~~~~~~~~~~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~ 427 (1175)
.|.+.|.+++..|+|- +|...|-+ +|...+..+.++++++|+.|..+..|+|++.--
T Consensus 127 ~F~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf----------------- 187 (586)
T KOG2007|consen 127 RFCYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKF----------------- 187 (586)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEecccc-----------------
Confidence 5779999999999985 56555555 499999999999999999999999999987731
Q ss_pred cCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCC-c--hHHHHHHHHh--h
Q psy7266 428 EDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWS-S--NARVICKAWL--K 502 (1175)
Q Consensus 428 ~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~wl--~ 502 (1175)
+..+|... |.. + .+..++..-. . ..-+-+-=|- +
T Consensus 188 ~~~YgKL~---G~~----~----------------------------------~~~~gEg~l~ds~KR~p~DFALWKAsK 226 (586)
T KOG2007|consen 188 PHSYGKLV---GQR----K----------------------------------NLQEGEGVLSDSRKRSPADFALWKASK 226 (586)
T ss_pred cchhhhhc---Cch----h----------------------------------hcccCcCccccccCCChhhhhhhhhcC
Confidence 11112110 100 0 0000000000 0 0000111121 1
Q ss_pred cCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 503 DGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 503 ~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
.|-.-| ...||...|.|+-|+.+ .-..+...+ .| +|-.|.|..+.|+-.-.|...+....-.|.
T Consensus 227 ~gEP~W----eSPWG~GRPGWHIECSa------Mas~~lG~~---lD---IH~GG~DL~FPHHeNEiAQ~eA~~~~~~wV 290 (586)
T KOG2007|consen 227 PGEPSW----ESPWGKGRPGWHIECSA------MASAILGSQ---LD---IHGGGIDLAFPHHENEIAQSEAAFDDSQWV 290 (586)
T ss_pred CCCCCC----CCCCCCCCCCceeeeHH------HHHHhhccc---cc---eecCcccccCCCcccHHHHHHHHhcCCccc
Confidence 344445 57899999999877655 000111111 11 899999999999998888777765555689
Q ss_pred eEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 583 ~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
++++++|+|+++|+|||||++|+|+..+++++ |+|+.||++++. ....++++|+.+.+... ..+...+.||+.-+-
T Consensus 291 nYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a--~q~e~~~~~ff~~~~ 366 (586)
T KOG2007|consen 291 NYFLHTGHLTINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLL-HQWRSPLDYSDSTMEQA--LQLEKSLNNFFLDVK 366 (586)
T ss_pred eeEEEcCeeeeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHH-HHhcCcCCchHHHHHHH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 999999999998 44567899999977654 234455666655444
Q ss_pred HHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 663 SFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
.+.. ...|...+.+.+..+...+......+..++ ++++.+.++..+.+++..+|.||....
T Consensus 367 al~~----~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 367 ALLR----GAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG 428 (586)
T ss_pred HHHh----ccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhc
Confidence 4433 222223467788899999999999999998 999999999999999999999998765
No 63
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2.1e-27 Score=284.69 Aligned_cols=269 Identities=13% Similarity=0.203 Sum_probs=179.8
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcc--------hHH------------HHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYG--------TAT------------ETKAL 340 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G--------~~i------------e~~a~ 340 (1175)
+.++|++++ +|||.+||||+++.+ .+|+++|++|++|++|.|++|+|+|| +|. ...++
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~-~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVA-RTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchh-hHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 348888888 699999999999755 59999999999999999999999996 333 22333
Q ss_pred HcCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc
Q psy7266 341 EEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG 420 (1175)
Q Consensus 341 ~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g 420 (1175)
..|+ +.+++++|.+.|.+.|+.|||++|.++.|.......+.+.+...|.+++.|..--.+.. +.-+.+.|.
T Consensus 101 p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~-----~~~~~~~~~-- 172 (510)
T PRK00750 101 PFGC-HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYL-----GEERQATYS-- 172 (510)
T ss_pred CCCC-chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhc-----CCccCCCee--
Confidence 4455 89999999999999999999999988777665566777777777777777743211110 000111111
Q ss_pred cCCCccccCCCCCcccccCCccccc----cc---cCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchH
Q psy7266 421 VCPKCRYEDARGDQCDGCGQLINAI----EL---IQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNA 493 (1175)
Q Consensus 421 ~cP~c~~~d~~G~~c~~~g~~~~~~----el---~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~ 493 (1175)
.+-..|++||+..... +. ..-+++.||+.-+.-... ---
T Consensus 173 ---------P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~-g~~------------------------ 218 (510)
T PRK00750 173 ---------PFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTG-GHG------------------------ 218 (510)
T ss_pred ---------eeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCC-CCc------------------------
Confidence 1223466666654311 11 112233477655532111 000
Q ss_pred HHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccc-hhHhHHHHHH
Q psy7266 494 RVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP-FHSIMFPATL 572 (1175)
Q Consensus 494 ~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~-fh~~~~pa~l 572 (1175)
.+.|-+..|. +|+-.+ |+ +...|+||.. .|.... .+.
T Consensus 219 -------------------KL~Wr~dW~~----------------rW~~l~-----Vd-~e~~GkDh~~~s~~~~~-~i~ 256 (510)
T PRK00750 219 -------------------KLQWKVDWPM----------------RWAALG-----VD-FEPFGKDHASASYDTSK-KIA 256 (510)
T ss_pred -------------------ccCCCCCcHH----------------HHHHcC-----CC-EEeeCcccCcchHHHHH-HHH
Confidence 1222222221 122111 11 6788999987 544432 222
Q ss_pred H-HhCCCcccCeEEEeeceeecC-CCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q psy7266 573 V-AAGDQYTKVNHIMATEYLNYE-DGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 573 ~-~~~~~~~~p~~i~~~g~l~~~-G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
. .+ +..+|.+ ++|||++.+ |+|||||+||+|++.|+++. +++|++|||++...+..+|++|++
T Consensus 257 ~~il--g~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 257 REIL--GGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HHHc--CCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHHHHhCCCCCCCCcccH
Confidence 2 33 4566755 779999877 99999999999999999996 999999999997777889999998
No 64
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=9.4e-23 Score=248.52 Aligned_cols=335 Identities=12% Similarity=0.158 Sum_probs=234.6
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH---HcCCC---c------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL---EEGLT---P------ 346 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~---~~g~~---p------ 346 (1175)
.+++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-....+|+|..+-..+. +.|.. +
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aii-Gd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 189 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMI-GNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRE 189 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHH-HHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHH
Confidence 3578999999999999999999999998 999999999999999999999999987765431 11211 0
Q ss_pred ----------------------------------------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHH
Q psy7266 347 ----------------------------------------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHL 386 (1175)
Q Consensus 347 ----------------------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 386 (1175)
+.+++...+.|+++|++|||.||++...+ .|...+..+
T Consensus 190 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es--~~~~~~~~v 267 (562)
T PRK12451 190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEA--FYNDLMEDF 267 (562)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchH--hhhhhHHHH
Confidence 01122334678899999999999775333 477778999
Q ss_pred HHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeeccc
Q psy7266 387 FDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQ 466 (1175)
Q Consensus 387 f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~q 466 (1175)
+..|.++|++|+.+...+.+.. ..|+ .+.+.+
T Consensus 268 ~~~L~~~g~~~e~dGa~~~~~~---------------------~~g~-----------------------~~~vl~---- 299 (562)
T PRK12451 268 IGILEEHDLLEESEGALVVNLE---------------------EEGM-----------------------PPCLIR---- 299 (562)
T ss_pred HHHHHHCCCEEecCCeEEEEec---------------------ccCC-----------------------CceEEE----
Confidence 9999999999987665443211 0010 011111
Q ss_pred ccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCC
Q psy7266 467 LFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATP 546 (1175)
Q Consensus 467 wfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~ 546 (1175)
++++.+....+.+.....+- .| +..|
T Consensus 300 -----------------ksDGt~~Y~t~DiA~~~~k~-------~~----------------------------~~~d-- 325 (562)
T PRK12451 300 -----------------KSDGATIYATRDLTAALYRQ-------NT----------------------------FGFD-- 325 (562)
T ss_pred -----------------eCCCccccchhHHHHHHHHh-------hc----------------------------cCCC--
Confidence 12223444445444333320 00 1112
Q ss_pred CCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCe--EEEeeceeecCCCcccccCCCccCchhhhhc----------
Q psy7266 547 QSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVN--HIMATEYLNYEDGKFSKSRGTGVFGNNAKDT---------- 614 (1175)
Q Consensus 547 ~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~--~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~---------- 614 (1175)
.+++++|.||-..-..++ +++..+| +.+.. .++.+|+|+.+|+||||++||+|+.+|+++.
T Consensus 326 ----~~IyV~g~dq~~h~~~l~-~~~~~lg--~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~ 398 (562)
T PRK12451 326 ----KALYVVGPEQSLHFNQFF-TVLKKLG--YTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIE 398 (562)
T ss_pred ----EEEEEeCCcHHHHHHHHH-HHHHHcC--CCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHH
Confidence 358899999764333333 4555555 33333 4566788988999999999999999999983
Q ss_pred --------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCC
Q psy7266 615 --------------GLPADIFRFYLLYVRPENQDTSFSWQDLATKN-NSELLNNLGNFINRALSFIEKNYGSTI-PEISP 678 (1175)
Q Consensus 615 --------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~-n~~l~~~l~n~~~r~~~~~~~~~~~~~-p~~~~ 678 (1175)
.+|.|++||++++..+ .++++|+|+.+.... |... -+....-|+.+++.+.-.... ....+
T Consensus 399 ~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~g~t~p--YiQYa~AR~~SIlrka~~~~~~~~~~l 475 (562)
T PRK12451 399 EKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGP--YVQYTHARACSILRKESVEFETCTFAL 475 (562)
T ss_pred hhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhCcCCCccH--HHHHHHHHHHHHHHhcCCCccccccCC
Confidence 2678999999999655 489999999975432 2211 334444599999887521100 01122
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 679 -IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 679 -~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
++.+..++..+..+...+.++++.++++.++..+++++..+|.|++.++-
T Consensus 476 ~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~V 526 (562)
T PRK12451 476 KDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRI 526 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56778899999999999999999999999999999999999999987763
No 65
>KOG1147|consensus
Probab=99.92 E-value=5.2e-25 Score=245.83 Aligned_cols=422 Identities=17% Similarity=0.284 Sum_probs=266.9
Q ss_pred eCCCcEEeCHHHHHHHH----------cCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-
Q psy7266 49 LDDGSQLFSANQSCLYL----------SKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS- 117 (1175)
Q Consensus 49 ~~dG~~l~eS~aI~~YL----------~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~- 117 (1175)
..||..+.++..+.+|. ++.+ .++++++.|+.|+.+ ....++...+..|+.+|.
T Consensus 42 ~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~--------------~~~~~~s~~~~~ld~~l~~ 106 (712)
T KOG1147|consen 42 FLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST--------------FSFDEISSSLSELDKFLVL 106 (712)
T ss_pred ccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh--------------cchHHHHHHHHHHHhhhhH
Confidence 45566666666677763 3444 788999999999874 234677888999999999
Q ss_pred CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHhcccccccCchhhhhhhh
Q psy7266 118 NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLKGSANDVGSLSEALFSL 197 (1175)
Q Consensus 118 ~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~kg~~~~~~~~~~~~~k~ 197 (1175)
++||+|+++|+||+++|++|..-.+..........+.+|.|||+ .|.+++++..+...+. .+++
T Consensus 107 ~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~----~~~~~~a~~~v~~t~~------------~~~k 170 (712)
T KOG1147|consen 107 RTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD----LPEFQEAHNKVLATLV------------ELKK 170 (712)
T ss_pred HHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC----cHhHHHHHHHHHHHHH------------hhcc
Confidence 99999999999999999999973222221122457899999998 5555555555521111 1110
Q ss_pred hhhhhcCcccccccccccccccccccCCCccccCCCccccccccccCCCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy7266 198 SIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQ 277 (1175)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~W~~~~~~~~~~~~~~~~p~ 277 (1175)
+..+.++++++.+++ +....+.+|.
T Consensus 171 ------------------~~~a~k~k~s~~~~~-------------------------------------~~~~ev~lP~ 195 (712)
T KOG1147|consen 171 ------------------SVNAGKKKESGQKKK-------------------------------------KENKEVDLPG 195 (712)
T ss_pred ------------------cccCccccccccccc-------------------------------------cCCccccCCc
Confidence 111111111111110 0112233554
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHH
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIH 357 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~ 357 (1175)
. ...-+++..||-|||+||||||..+.| .-+|+-- |+-..++-+| +++|....++|.+.|
T Consensus 196 a-e~GkVv~RFPPEpSGyLHIGHAKAALL-NqYfa~~-----~~G~LIvRFD-------------DTNPaKE~~eFe~~I 255 (712)
T KOG1147|consen 196 A-EMGKVVTRFPPEPSGYLHIGHAKAALL-NQYFAQA-----YQGKLIVRFD-------------DTNPAKENEEFEDVI 255 (712)
T ss_pred c-ccCceEEecCCCCCceeehhhHHHHHH-HHHHHHh-----cCceEEEEec-------------CCCcchhhHHHHHHH
Confidence 3 333478889999999999999998777 5444431 2223444444 589999999999999
Q ss_pred HHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccce--ecccCCCcccc-------
Q psy7266 358 REVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRF--VEGVCPKCRYE------- 428 (1175)
Q Consensus 358 ~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~--V~g~cP~c~~~------- 428 (1175)
.+++..|||..|.+.+|+| |++.+.++..+|++.|.+|.++++. ++.-.+|+ |+..|.....+
T Consensus 256 leDl~~LgIkpd~~TyTSD--yF~~i~dycv~likeGKAYvDDTp~------E~Mr~ER~~gv~Sk~R~~~vEenl~iw~ 327 (712)
T KOG1147|consen 256 LEDLSLLGIKPDRVTYTSD--YFDEIMDYCVKLIKEGKAYVDDTPT------EQMRDEREQGVESKCRSNSVEENLRIWE 327 (712)
T ss_pred HHHHHHhCcCcceeeechh--hHHHHHHHHHHHHhcCcccccCCcH------HHHHHHHhccccccccCCCHHHHHHHHH
Confidence 9999999999999978876 9999999999999999999988765 22222222 33334222211
Q ss_pred -----CCCCCcccccCCccc---cccccCCcccCCCCccEEeecccccc-cchhHHHHHHHHHHhcCCCC---CchHHHH
Q psy7266 429 -----DARGDQCDGCGQLIN---AIELIQPRCKQCSQAPTVKSSTQLFL-ELPKIEDKLQSWVSETSDQW---SSNARVI 496 (1175)
Q Consensus 429 -----d~~G~~c~~~g~~~~---~~el~~~~c~r~~~~~~~~~~~qwfl-~l~~~~~~l~~~~~~~~~~~---~~~~~~~ 496 (1175)
...|..|+..+++.. ..-+.+|+..||+-.++.|....|=+ ..-+|...+.+.++...... ..+-|+.
T Consensus 328 EM~kGs~~Gl~~CvRaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~ 407 (712)
T KOG1147|consen 328 EMKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNA 407 (712)
T ss_pred HHhccchhhhhhheeeeecccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccch
Confidence 367888887777642 23578999999999999998877643 23356666666666543211 1223566
Q ss_pred HHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhC
Q psy7266 497 CKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAG 576 (1175)
Q Consensus 497 ~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~ 576 (1175)
+..|+-+.|+= +-|- .|- |-.+.+.-.+++-.
T Consensus 408 Qyyw~i~al~L-----------Rkp~-----------------iwe--------------------fsRlN~~nTvLSKR 439 (712)
T KOG1147|consen 408 QYYWFIDALGL-----------RKPH-----------------IWE--------------------FSRLNFVNTVLSKR 439 (712)
T ss_pred HHHHHHHHhcC-----------Cccc-----------------eee--------------------hhhhhhHhhhhhhh
Confidence 67777543321 1110 011 11111222222211
Q ss_pred CCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHH
Q psy7266 577 DQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLA 643 (1175)
Q Consensus 577 ~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~ 643 (1175)
-..-++-+|+|. -++=. +.+.+-++.+|+..++||=|++.+++-.+-...+|+.+-
T Consensus 440 ----KLtwfVd~GlV~GWDDPR-------fpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiW 496 (712)
T KOG1147|consen 440 ----KLTWFVDEGLVDGWDDPR-------FPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIW 496 (712)
T ss_pred ----heeeeeccCcccCCCCCC-------cchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhh
Confidence 112233445552 23322 334445677889999999999999888777888998764
No 66
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.7e-22 Score=242.11 Aligned_cols=369 Identities=15% Similarity=0.153 Sum_probs=244.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH-------H-cC-------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL-------E-EG------- 343 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~-------~-~g------- 343 (1175)
..++++|...-|||+|++||||+|+++| +|+++|.++..||+|......+|+|..+...+. + .+
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aii-GDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~ 193 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAII-GDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDG 193 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHH-HHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcch
Confidence 3578999999999999999999999998 999999999999999999999999987754321 0 00
Q ss_pred --------------CCch------------------h------hHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHH
Q psy7266 344 --------------LTPR------------------Q------ICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385 (1175)
Q Consensus 344 --------------~~p~------------------~------~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 385 (1175)
.++. + +++.....+++++.+|||+||.|...++..+...+..
T Consensus 194 ~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 194 YLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHH
Confidence 0011 1 3334456788999999999999987777778888999
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecc
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSST 465 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~ 465 (1175)
+...|.++|++|+.+.. +|.....+. .+|+. .+.+.+
T Consensus 274 vv~~L~~~~~~~e~~GA--~~vdl~~~~----------------~~gd~----------------------~~~vl~--- 310 (577)
T COG0018 274 VVEDLEEKGLLYEDDGA--LVVDLLKFK----------------KFGDD----------------------KDRVLQ--- 310 (577)
T ss_pred HHHHHHhcCCEeeeCCe--EEEehhhhh----------------hcCCC----------------------CCeEEE---
Confidence 99999999999994322 222211110 01110 011111
Q ss_pred cccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCC
Q psy7266 466 QLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTAT 545 (1175)
Q Consensus 466 qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~ 545 (1175)
++++.+....+.+....-+-+ +..+
T Consensus 311 ------------------KSDGt~lY~t~DIAy~~~K~~------------------------------------~~~d- 335 (577)
T COG0018 311 ------------------KSDGTYLYFTRDIAYHLYKFE------------------------------------RGFD- 335 (577)
T ss_pred ------------------EcCCCeeeehhHHHHHHHHHh------------------------------------cCCC-
Confidence 111123333333332222100 1122
Q ss_pred CCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEee-c--eee-cCCCcccccCCCccCchhhhhcCCC----
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-E--YLN-YEDGKFSKSRGTGVFGNNAKDTGLP---- 617 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~-g--~l~-~~G~KMSKS~GN~v~~~d~i~~~~g---- 617 (1175)
.+++++|.||--.-..++.+ +...| +.+++.++.| + ++. -+|.||||+.|++|+.+|+++. .+
T Consensus 336 -----~~IyV~gadq~~~~~ql~~~-l~~~g--~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde-~~era~ 406 (577)
T COG0018 336 -----KLIYVLGADQHGHFKQLKAV-LELLG--YGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AGERAP 406 (577)
T ss_pred -----EEEEEeCCcchhHHHHHHHH-HHHhc--CCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH-HHHHhh
Confidence 35889999987544444433 33333 4445433333 3 333 3678999999999999999985 55
Q ss_pred ------------------chhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---
Q psy7266 618 ------------------ADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI--- 676 (1175)
Q Consensus 618 ------------------aDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~--- 676 (1175)
.||+||++++..+ ..++.|+|+.+.+..+ +-+-.+.....|+.+++.+.-....+..
T Consensus 407 ~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfeg-Nt~pYvQYA~ARi~SIlrka~e~~~~~~~~~ 484 (577)
T COG0018 407 EEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEG-NTAPYVQYAHARICSILRKAGEDELDLSTEA 484 (577)
T ss_pred hHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccC-CCchhHHHHHHHHHHHHHhcccccccccccc
Confidence 8999999999655 4799999999875433 3333344444589998887542222211
Q ss_pred --CC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChh-hHHHHHHHHHHHHHH
Q psy7266 677 --SP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPE-QKSRASTVLGILCQV 752 (1175)
Q Consensus 677 --~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~-~~~~~~~vl~~~~~~ 752 (1175)
.+ .+.++.|+..+.++...+.++.+.++++..+.++++++..+|.|++.++- +..++.+ ..+|+ .++.....+
T Consensus 485 ~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~V--l~~~~~~~~~aRL-~L~~a~~~v 561 (577)
T COG0018 485 DALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPV--LGAENEELRAARL-ALVKATRQV 561 (577)
T ss_pred chhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCc--CCCCcHHHHHHHH-HHHHHHHHH
Confidence 22 34468899999999999999999999999999999999999999998764 4333221 11222 233334455
Q ss_pred HHHHHHHc
Q psy7266 753 SYLLSLLL 760 (1175)
Q Consensus 753 l~~l~~lL 760 (1175)
|+..+.||
T Consensus 562 L~ngL~LL 569 (577)
T COG0018 562 LKNGLDLL 569 (577)
T ss_pred HHHHHHhc
Confidence 55555554
No 67
>PLN02286 arginine-tRNA ligase
Probab=99.89 E-value=7.6e-21 Score=231.83 Aligned_cols=363 Identities=12% Similarity=0.100 Sum_probs=244.5
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHH----cCC--Cch-----
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE----EGL--TPR----- 347 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~----~g~--~p~----- 347 (1175)
++++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-....+|+|..+-..+.. .+. .+.
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaii-GdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTII-GDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhh-HHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 4478999999999999999999999998 9999999999999999999999999877654321 111 000
Q ss_pred ------------------------------------------hhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHH
Q psy7266 348 ------------------------------------------QICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385 (1175)
Q Consensus 348 ------------------------------------------~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 385 (1175)
.+++.....|.+.+.+|||+||.+ .+..|...+..
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 112223356788899999999973 33347777899
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecc
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSST 465 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~ 465 (1175)
++..|.++|++|+.+...+.+ +.+ . +.+.+.+
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~------l~~---------------~------------------------~~~~vl~--- 302 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIF------VEG---------------F------------------------DIPLIVV--- 302 (576)
T ss_pred HHHHHHHCCCEEeeCCceEee------ccC---------------C------------------------CCceEEE---
Confidence 999999999999765443221 000 0 0011111
Q ss_pred cccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCC
Q psy7266 466 QLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTAT 545 (1175)
Q Consensus 466 qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~ 545 (1175)
+.++.+....+.+...+.+- .| |..|
T Consensus 303 ------------------ksDGt~tY~t~DIA~~~~k~-------~~----------------------------~~~d- 328 (576)
T PLN02286 303 ------------------KSDGGFNYASTDLAALWYRL-------NE----------------------------EKAE- 328 (576)
T ss_pred ------------------ECCCchhhHHHHHHHHHHHH-------hc----------------------------cCCC-
Confidence 12223555556655544430 00 1111
Q ss_pred CCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc-cC--eEEEeeceee-cCCCcccccCCCccCchhhhhc-------
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT-KV--NHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT------- 614 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~-~p--~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~------- 614 (1175)
.+++++|.||...-..++ +++..+|.... +. -.++.+|+|+ .+|+||||++||+|+.+|+++.
T Consensus 329 -----~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~ 402 (576)
T PLN02286 329 -----WIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKA 402 (576)
T ss_pred -----EEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHH
Confidence 348899999864333333 45566653211 01 3467789996 6888999999999999999983
Q ss_pred ---------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC-
Q psy7266 615 ---------------------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST- 672 (1175)
Q Consensus 615 ---------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~- 672 (1175)
.+|.|++||++++..+ ..+++|+|+.+.+...+.-. -+.....|+.+++.+.-...
T Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~p-YlQYahAR~~SIlrKa~~~~~ 480 (576)
T PLN02286 403 ALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLDLKGNTAV-YLLYAHARICSIIRKSGKDID 480 (576)
T ss_pred HHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHhhcCCChH-HHHHHHHHHHHHHHhccCccc
Confidence 3578999999999655 48999999997643221111 34555569999988752211
Q ss_pred -CC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHH
Q psy7266 673 -IP---EISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLG 747 (1175)
Q Consensus 673 -~p---~~~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~ 747 (1175)
.. ...+ ++.++.|+..+..+...+..+.+.++++..+.++++++..+|.|++.++ ++. .++. ..|+ ..+.
T Consensus 481 ~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~--Vl~-~~~~-~aRL-~L~~ 555 (576)
T PLN02286 481 ELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK--VNG-SEEE-TSRL-LLCE 555 (576)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc--cCC-CCch-hHHH-HHHH
Confidence 11 1122 5677899999999999999999999999999999999999999998774 232 2211 2332 2233
Q ss_pred HHHHHHHHHHHHc
Q psy7266 748 ILCQVSYLLSLLL 760 (1175)
Q Consensus 748 ~~~~~l~~l~~lL 760 (1175)
....+|...+.||
T Consensus 556 a~~~vL~~gL~LL 568 (576)
T PLN02286 556 ATAIVMRKCFHLL 568 (576)
T ss_pred HHHHHHHHHHHhc
Confidence 3455666555555
No 68
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.89 E-value=2.1e-22 Score=239.31 Aligned_cols=263 Identities=17% Similarity=0.279 Sum_probs=169.9
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCc------------------chHHHHHHHHc
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEY------------------GTATETKALEE 342 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~------------------G~~ie~~a~~~ 342 (1175)
++++|+++.+ |||.+||||+++.+ .+|+++|++|++|++|.+++|+|+| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~-~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVI-TADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhh-HHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 4699999998 99999999999855 5999999999999999999999999 99999999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhccccccccCCCC---CHHHHHHHHHHHHHHHHcCCEE---ec-eEEEeeeCCCCccccc
Q psy7266 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTS---TPQQTEIVQHLFDRVHKAGFTS---SA-SVEQLHCAQCDRFLAD 415 (1175)
Q Consensus 343 g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~---~~~~~~~v~~~f~~L~~~G~iy---~~-~~~~~~c~~~~~~l~d 415 (1175)
|++ ..++++|...|.+.++.|||+++..+.|. +-.|.+.+..++++-.+-.-|. ++ .....|.
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~--------- 165 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWY--------- 165 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCce---------
Confidence 986 89999999999999999999998875432 2245555555544433322221 11 1111111
Q ss_pred ceecccCCCccccCCCCCcccccCCccccc------cccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC
Q psy7266 416 RFVEGVCPKCRYEDARGDQCDGCGQLINAI------ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW 489 (1175)
Q Consensus 416 ~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~------el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~ 489 (1175)
.+-..|++||+...+. .-+...| .||+..+.-.... ..
T Consensus 166 --------------P~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g-----------------~~---- 209 (515)
T TIGR00467 166 --------------PISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTG-----------------AI---- 209 (515)
T ss_pred --------------eeeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCC-----------------Cc----
Confidence 1122455555543211 0122244 3666555321110 00
Q ss_pred CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccc----hhH
Q psy7266 490 SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP----FHS 565 (1175)
Q Consensus 490 ~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~----fh~ 565 (1175)
.+.|-+..|. +|+-.+ |+ +-..|+||.- +-.
T Consensus 210 -----------------------KL~WkvdW~~----------------RW~~lg-----V~-~Ep~GkDH~~~ggsy~~ 244 (515)
T TIGR00467 210 -----------------------KLPWRVDWPA----------------RWKIEK-----VT-FEPAGKDHAAAGGSYDT 244 (515)
T ss_pred -----------------------ccCCCCCcHh----------------hHhhhC-----cc-cccCCCCccCccCCchh
Confidence 1222222221 122111 11 4456888864 222
Q ss_pred hHHHHHHHHhCCCcccCeEEEeecee--ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHH
Q psy7266 566 IMFPATLVAAGDQYTKVNHIMATEYL--NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL 642 (1175)
Q Consensus 566 ~~~pa~l~~~~~~~~~p~~i~~~g~l--~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~ 642 (1175)
-...+. ..++ ..+|.. +.++|+ ..+|+|||||+||+|++.|+++. +++|++||++++ ....++++|+++.+
T Consensus 245 ~~~ia~-~~l~--~~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pdalR~~~l~-~~~~~~ldFd~~~l 317 (515)
T TIGR00467 245 GVNIAK-EIFQ--YSPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPEITRFLFAR-TKPEFHISFDLDVI 317 (515)
T ss_pred HHHHHH-HHhC--CCCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHHHHHHHHhc-cCCCCCCcCCHHHH
Confidence 222222 2332 444544 336665 34677999999999999999997 999999999777 45568999999966
No 69
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.88 E-value=6.9e-22 Score=212.70 Aligned_cols=124 Identities=12% Similarity=0.182 Sum_probs=113.9
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
+++|...+|||||+|||||+|++++ +|+++||+|+.||+|.++.++||+|++|+..|...+ .+.++++.+.+.+.+++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vi-gD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~ 78 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAII-GDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETY 78 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHH-HHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999877 999999999999999999999999999999997664 38999999999999999
Q ss_pred hhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCC
Q psy7266 362 EWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQC 409 (1175)
Q Consensus 362 ~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~ 409 (1175)
++|||++|.+.+|++ +...++.+++.|.++|++|+.+..+++|+.+
T Consensus 79 ~~L~i~~d~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 79 GRLDVRFDVWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHhCCcCceecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999988886 4899999999999999999988877777654
No 70
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.87 E-value=1.1e-21 Score=211.92 Aligned_cols=173 Identities=12% Similarity=0.148 Sum_probs=139.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~-~~g~~l~ES~AIl~YL~~~~~~~~l~ 89 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV-DRELTLYESRIIMEYLDERFPHPPLM 89 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEE-ECCEEeeCHHHHHHHHHHhCCCCCCC
Confidence 689999999999999999999999999999987542 278999999996 78899999999999996
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPL 140 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~ 140 (1175)
|.++.+++.+++|+.+....+.+....+. .+. ...+.+...|..||++|. ++||+|+++|+|||++++.+.++
T Consensus 90 p~~~~~ra~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 90 PVYPVARGESRLMMHRIEKDWYSLMNKIV-NGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHH
Confidence 45677889999999887655544332221 121 223467888999999999 99999999999999999999875
Q ss_pred hhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 141 LSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 141 ~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
..... ......||+|.+|+++|.++|++++++..-
T Consensus 169 ~~~~~-~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~ 203 (211)
T PRK09481 169 PVLGI-ELSGPGAKELKGYMTRVFERDSFLASLTEA 203 (211)
T ss_pred HhcCC-CCCCCCChhHHHHHHHHhccHHHHHHcCHH
Confidence 43222 122257999999999999999999887644
No 71
>PLN02473 glutathione S-transferase
Probab=99.87 E-value=8.4e-22 Score=213.58 Aligned_cols=175 Identities=19% Similarity=0.318 Sum_probs=139.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++.+. .+||+|+||+|+ +||.+|+||.||++||.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE-DGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEE-ECCEEEEehHHHHHHHHHHcCCc
Confidence 799999999999999999999999999999987642 169999999996 68899999999999995
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhh-----hhc--CCCC--------chHHHHHHHHHHHHHhc-CCcccCCC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLS-----FFD--NPKV--------LPDNLKTKLNVLNEAIS-NSFLIENS 125 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~-----~~~--~g~~--------~~~~l~~~L~~Le~~L~-~~fLvG~~ 125 (1175)
|.++.+++++++|+.+....+.+.... .+. .+.. ....+.+.|+.||++|+ ++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 345678899999999887766543211 111 1111 12467788999999999 89999999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.+.++............||+|.+|+++|.++|++++++...
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~~ 212 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMELA 212 (214)
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHHh
Confidence 999999999999875422211123578999999999999999999988653
No 72
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.87 E-value=1.9e-21 Score=208.70 Aligned_cols=171 Identities=23% Similarity=0.327 Sum_probs=141.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.+ ++++++++|+++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.||++||.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 799999876 79999999999999999999987531 278999999998789999999999999995
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++++++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|. ++||+|+++|+|||+++
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~ 159 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLF 159 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHH
Confidence 345678899999999988877776554433111 123467888999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.... .....||+|.+|+++|.++|.|++++..
T Consensus 160 ~~~~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 160 TVLRWAYAVK---LNLEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHhhccC---CCcccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9998864332 2346899999999999999999998864
No 73
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.87 E-value=2.4e-21 Score=210.16 Aligned_cols=172 Identities=23% Similarity=0.343 Sum_probs=138.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEe----CCC--cEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLEL----DDG--SQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~----~dG--~~l~eS~aI~~YL~ 66 (1175)
|+||+++ ++++++|+++|+++|++|+.+.+++..+ .+||.|+||+|+. +|| .+|+||.||++||.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 6899887 6999999999999999999999987542 2799999999986 356 47999999999986
Q ss_pred -------CCChHHHHHHHHHHHHHhhhchhhhhhhhcC----CC-------CchHHHHHHHHHHHHHhc-CCcccCCCCC
Q psy7266 67 -------KFDTKNESAINQWLEWESVELFPSVLSFFDN----PK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTT 127 (1175)
Q Consensus 67 -------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~----g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lT 127 (1175)
|.++.+++++++|+.|..+.+.+.+...... .. .....+.+.|..||.+|. ++||+|+++|
T Consensus 81 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t 160 (215)
T PRK13972 81 EKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS 160 (215)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCC
Confidence 5567899999999999988877654322110 11 112357788999999999 9999999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|||++++.+....... .....||+|.+|+++|.++|++++++..-
T Consensus 161 ~ADi~l~~~~~~~~~~~---~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 161 IADIACWPWVNAWTRQR---IDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred HHHHHHHHHHHHHhhcC---CcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 99999998775433221 23578999999999999999999987654
No 74
>PLN02395 glutathione S-transferase
Probab=99.84 E-value=1.6e-20 Score=203.70 Aligned_cols=174 Identities=19% Similarity=0.299 Sum_probs=138.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+.+. +++++++++|.++|++|+.+.+++..+ .+||.|+||+|+ ++|.+|+||.||++||.
T Consensus 3 ~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 3 LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIV-DGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEE-ECCEEEEcHHHHHHHHHHHcCCC
Confidence 58998665 468999999999999999999987521 279999999996 77789999999999996
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHHhc-CCcccCCC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENS 125 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~ 125 (1175)
|.++.+++++++|+.|....+.+.+..... .+. ...+.+.+.|+.||++|+ ++|++|++
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 160 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDF 160 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 245678999999999988777665433211 011 123456788999999999 99999999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.+.++............||+|.+|+++|.++|.+++++...
T Consensus 161 ~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 161 VSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred cCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 999999999988775322111223577999999999999999999998765
No 75
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.84 E-value=1.7e-20 Score=201.42 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=137.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.++... ..+||.|+||+|+.+||.+|+||.||++||.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 79999999999999999999999999998888643 2379999999998788999999999999986
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD---NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++++++|+.|..+.+.+.+..+.. .+. .....+.+.|+.||++|. +. |+|+++|+|||+++
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~ 159 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIA 159 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHH
Confidence 456678889999988877666544322221 111 123467888999999999 77 99999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.+.++............||+|.+|+++|.++|+|+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~ 198 (202)
T PRK10357 160 CAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTE 198 (202)
T ss_pred HHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcC
Confidence 999876432221122467999999999999999998753
No 76
>PRK15113 glutathione S-transferase; Provisional
Probab=99.83 E-value=7.3e-20 Score=198.28 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=135.4
Q ss_pred CEEEecC--CCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNR--NNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~--~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++ .||++++++++|.++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~-~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ-HDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcC
Confidence 6899975 79999999999999999999999997642 279999999996 77899999999999986
Q ss_pred --------CCChHHHHHHHHHHHHHhhhchhhhhhh----hcCC-------CCchHHHHHHHHHHHHHhc--CCcccCCC
Q psy7266 67 --------KFDTKNESAINQWLEWESVELFPSVLSF----FDNP-------KVLPDNLKTKLNVLNEAIS--NSFLIENS 125 (1175)
Q Consensus 67 --------p~~~~~~a~v~~wl~~~~~~l~p~~~~~----~~~g-------~~~~~~l~~~L~~Le~~L~--~~fLvG~~ 125 (1175)
|.++.+++++++|+.|..+.+.+..... +..+ ....+.+.+.|..||++|+ +.|++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~- 163 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE- 163 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-
Confidence 2356789999999999877665432111 0111 1234567899999999997 4799996
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.+.++..... .. .|+|.+|++||.++|+|+++++..
T Consensus 164 ~TlADi~l~~~l~~~~~~~~---~~--~p~l~~~~~r~~~rp~~~~~~~~~ 209 (214)
T PRK15113 164 WCIADTDLALMLNRLVLHGD---EV--PERLADYATFQWQRASVQRWLALS 209 (214)
T ss_pred ccHHHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999987543221 12 299999999999999999999876
No 77
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.4e-20 Score=198.39 Aligned_cols=167 Identities=22% Similarity=0.326 Sum_probs=140.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-c------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-A------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------- 66 (1175)
|+||+++.||+++++++++.++|++|+.+.|++.. . .+||.|+||+|+++||.+|+||.||++||.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 79999999999999999999999999999999974 1 279999999998888779999999999996
Q ss_pred --CCChH---HHHHHHHHHHHHhhhchhhhhhhhcCC------------CCchHHHHHHHHHHHHHhc-CCcccCCCCCc
Q psy7266 67 --KFDTK---NESAINQWLEWESVELFPSVLSFFDNP------------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTV 128 (1175)
Q Consensus 67 --p~~~~---~~a~v~~wl~~~~~~l~p~~~~~~~~g------------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTl 128 (1175)
|.++. +++.+..|+.|....+.+.+....... ....+.+...+..+|..|. ++|++|+++|+
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ti 160 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFTI 160 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCH
Confidence 33443 778888999999888888766644321 1234567889999999999 99999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHH
Q psy7266 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQ 170 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~ 170 (1175)
|||++++.+.++..... ....||+|.+|++|+.++|.++
T Consensus 161 AD~~~~~~~~~~~~~~~---~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 161 ADIALAPLLWRLALLGE---ELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHhhhcCc---ccccChHHHHHHHHHHcCCchh
Confidence 99999999998543332 2278999999999999999976
No 78
>PRK11752 putative S-transferase; Provisional
Probab=99.83 E-value=9.4e-20 Score=203.09 Aligned_cols=173 Identities=21% Similarity=0.352 Sum_probs=134.3
Q ss_pred CEEEecCCCchHHHHHHHHHhc------CCCcEEEEecCccc--------ccCCCCcccEEEeCCC---cEEeCHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFS------TTKLDVELVDVADA--------RLLLSKTVPVLELDDG---SQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~------gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG---~~l~eS~aI~~ 63 (1175)
|+||+.+ ||++++|+++|.++ |++|+.+.|++... .+||.|+||+|+.+|| .+|+||.||++
T Consensus 45 ~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~ 123 (264)
T PRK11752 45 LQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILL 123 (264)
T ss_pred eEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHH
Confidence 6899875 89999999999997 89999999987542 2899999999987654 69999999999
Q ss_pred HHc-------CCChHHHHHHHHHHHHHhhhchh---hhhhhhc-CCCC-------chHHHHHHHHHHHHHhc-CCcccCC
Q psy7266 64 YLS-------KFDTKNESAINQWLEWESVELFP---SVLSFFD-NPKV-------LPDNLKTKLNVLNEAIS-NSFLIEN 124 (1175)
Q Consensus 64 YL~-------p~~~~~~a~v~~wl~~~~~~l~p---~~~~~~~-~g~~-------~~~~l~~~L~~Le~~L~-~~fLvG~ 124 (1175)
||. |.++.+++++++|+.|....+.. .+..++. .... ....+.+.|+.||++|. ++||+|+
T Consensus 124 YL~~~~~~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd 203 (264)
T PRK11752 124 YLAEKFGAFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGD 203 (264)
T ss_pred HHHHhcCCcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 995 56778999999999988654311 1111111 1111 12356788999999999 9999999
Q ss_pred CCCccchhHHHHHHHHhhC----CCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 125 STTVADICIWTCVYPLLSD----SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 125 ~lTlADi~l~~~L~~~~~~----~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
++|+|||++++.+.++... .........||+|.+|+++|.++|+|++++.
T Consensus 204 ~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~ 257 (264)
T PRK11752 204 EYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRI 257 (264)
T ss_pred ccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHh
Confidence 9999999999988765321 1111235789999999999999999999765
No 79
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.81 E-value=1.3e-19 Score=195.74 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=136.1
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc---------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD---------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~---------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
+||+++.||++++++++|.++|++|+.+.+++.. ..+||+|+||+|+ +||.+|+||.+|++||.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLD-IDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEE-ECCEEeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999888621 2378999999997 68899999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhh----hhhhc--CCC--C-----chHHHHHHHHHHHHHhc-C--CcccCCCCC
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSV----LSFFD--NPK--V-----LPDNLKTKLNVLNEAIS-N--SFLIENSTT 127 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~----~~~~~--~g~--~-----~~~~l~~~L~~Le~~L~-~--~fLvG~~lT 127 (1175)
|.++.+++.+++|+.+....+.+.. ..++. .+. . ..+.+.+.|..||++|. + +||+|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 4567889999999998876654421 11111 111 1 12357889999999998 4 499999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+|||++++.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~ADi~~~~~l~~~~~~~---~~~~~~p~l~~~~~~~~~rp~~~~~~~~ 204 (210)
T TIGR01262 160 LADLCLVPQVYNAERFG---VDLTPYPTLRRIAAALAALPAFQRAHPE 204 (210)
T ss_pred HHHHHHHHHHHHHHHcC---CCcccchHHHHHHHHHhcCHHHHHhCcc
Confidence 99999999998864322 2357899999999999999999988754
No 80
>KOG0406|consensus
Probab=99.81 E-value=2.4e-19 Score=188.23 Aligned_cols=176 Identities=17% Similarity=0.212 Sum_probs=146.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cC-CCCcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LL-LSKTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
++||++..||+++|++|+|+++||+|+++..|+.+.. .| +.++||+|+ ++|..|+||..|++||.
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~-Hn~k~i~ESliiveYiDe~w~~~~~ 88 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLE-HNGKPICESLIIVEYIDETWPSGPP 88 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEE-ECCceehhhHHHHHHHHhhccCCCC
Confidence 4799999999999999999999999999999998632 56 799999996 88888999999999984
Q ss_pred --CCChHHHHHHHHHHHHHhhhchhhhhhhhc-CC-C---CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHH
Q psy7266 67 --KFDTKNESAINQWLEWESVELFPSVLSFFD-NP-K---VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 67 --p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-~g-~---~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L 137 (1175)
|.||.+|++.+.|+++.+..++.....+.. .+ + ...+++...|..||+.|. .+|+.|+++++.||++|+.+
T Consensus 89 iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~ 168 (231)
T KOG0406|consen 89 ILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSF 168 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhH
Confidence 789999999999999999887766555543 22 2 234568999999999999 89999999999999999777
Q ss_pred HHHhhC----C-CCCCCcccchhHHHHHHHHhcCHHHHHHHHHHH
Q psy7266 138 YPLLSD----S-KVRPLLSSYTNITPWYDRISKLPQVQKALKTWT 177 (1175)
Q Consensus 138 ~~~~~~----~-~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~ 177 (1175)
.+.... . ........+|.|.+|.++|.++|.+++++...+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e 213 (231)
T KOG0406|consen 169 ERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSE 213 (231)
T ss_pred HHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHH
Confidence 665411 1 112346789999999999999999999876553
No 81
>KOG0867|consensus
Probab=99.80 E-value=3e-19 Score=193.94 Aligned_cols=175 Identities=24% Similarity=0.378 Sum_probs=147.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.|+++++++++++++|++|+.+.+++..++ +||+|+||+|+ ++|..|+||.||++||+
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~-d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALE-DGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEe-cCCeEEeeHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999988887643 78999999996 77999999999999985
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhh--hhhhc---CC--------CCchHHHHHHHHHHHHHhc-CCcccCCCCC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSV--LSFFD---NP--------KVLPDNLKTKLNVLNEAIS-NSFLIENSTT 127 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~--~~~~~---~g--------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lT 127 (1175)
|.+...++.+++|+.|..+.+.+.. ..++. .+ ......+...++.+|.+|. +.|++|+++|
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~t 161 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLT 161 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCccc
Confidence 5567889999999999999998873 22221 11 2345688999999999999 9999999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+||+.+.+.+..+...........+||++.+|++++..+|..++.....
T Consensus 162 lADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~ 210 (226)
T KOG0867|consen 162 LADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANEKG 210 (226)
T ss_pred HHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999986321112456789999999999999999988876554
No 82
>PRK10387 glutaredoxin 2; Provisional
Probab=99.79 E-value=6.2e-19 Score=190.51 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=128.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CCC---h
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---KFD---T 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~~---~ 70 (1175)
|+||+++.||++++++++|+++|++|+.+.++..+ ..++|.|+||+|+.+||.+|+||.||++||. |.. +
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~ 80 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTG 80 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCCC
Confidence 89999999999999999999999999998886543 2367899999997688999999999999997 221 1
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhc-----------------------CC---------CCchHHHHHHHHHHHHHhcC
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFD-----------------------NP---------KVLPDNLKTKLNVLNEAISN 118 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~-----------------------~g---------~~~~~~l~~~L~~Le~~L~~ 118 (1175)
.+++.+++|+.+....+.+.+...+. .| ....+.+.+.|..||++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 160 (210)
T PRK10387 81 KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK 160 (210)
T ss_pred cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC
Confidence 35778899998876555433321110 00 01234678889999998888
Q ss_pred CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 119 SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 119 ~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
+||+|+++|+|||++++.+.++..... ...+|+|.+|++||.++|.+
T Consensus 161 ~~l~G~~~s~ADi~l~~~l~~~~~~~~----~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 161 PNAVNGELSTDDIHLFPILRNLTLVKG----IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred ccccCCCCCHHHHHHHHHHhcceeecC----CCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999998643211 12469999999999998865
No 83
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.78 E-value=1.5e-18 Score=186.59 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=126.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-c----------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcCC-
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-A----------RLLLSKTVPVLELDDGSQLFSANQSCLYLSKF- 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~----------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~- 68 (1175)
|+||+++.++++++|+++|+++|++|+.+.++... . .+||+|+||+|+ +||.+|+||.||++||+..
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~eS~AI~~YLa~~~ 83 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILE-MDNIIFAQSQAIVRYLSKKY 83 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHc
Confidence 68999999999999999999999999998775311 1 378999999996 6789999999999999721
Q ss_pred ---ChHHHHHHHHHHHHHhh-hchhhhhhhhcCC----CCchHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHH
Q psy7266 69 ---DTKNESAINQWLEWESV-ELFPSVLSFFDNP----KVLPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 69 ---~~~~~a~v~~wl~~~~~-~l~p~~~~~~~~g----~~~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L 137 (1175)
......++..|+.+... .+...+....... ....+.+.+.|..||++|. + +||+|+++|+|||++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~ 163 (205)
T PTZ00057 84 KICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLY 163 (205)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHH
Confidence 11233444445444431 2222111110000 1123567888999999998 4 7999999999999999998
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.++.... ......||+|.+|+++|.++|.+++++++
T Consensus 164 ~~~~~~~--~~~l~~~P~l~~~~~r~~~~P~~k~y~~~ 199 (205)
T PTZ00057 164 DDIETKY--PNSLKNFPLLKAHNEFISNLPNIKNYISN 199 (205)
T ss_pred HHHHHhC--hhhhccChhHHHHHHHHHhChHHHHHHHh
Confidence 7753211 23467899999999999999999999865
No 84
>KOG0868|consensus
Probab=99.78 E-value=7.9e-19 Score=171.20 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=143.3
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
+||++..|..++|||++|.++|++|+.+.|++..+ ++||+++||+|+ .||.+|+||.||+.||.
T Consensus 7 iLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~-i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 7 ILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLV-IDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred hhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEE-ECCEEeehHHHHHHHHHhcCCCC
Confidence 68999999999999999999999999999998653 279999999995 99999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhh--hhhhcCCCC--------chHHHHHHHHHHHHHhc---CCcccCCCCCccc
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSV--LSFFDNPKV--------LPDNLKTKLNVLNEAIS---NSFLIENSTTVAD 130 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~--~~~~~~g~~--------~~~~l~~~L~~Le~~L~---~~fLvG~~lTlAD 130 (1175)
|.++..|+.+++......+.++|.- ..+.+.++. +...+.+.+..||+.|. +.|.+||++|+||
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiAD 165 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIAD 165 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhh
Confidence 7788899999999998888888742 222222221 13467899999999998 8999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
+++.+.++...+.. .....||.+.|..+.+...|.|+.++-
T Consensus 166 l~L~pqv~nA~rf~---vdl~PYPti~ri~e~l~elpaFq~ahP 206 (217)
T KOG0868|consen 166 LCLPPQVYNANRFH---VDLTPYPTITRINEELAELPAFQAAHP 206 (217)
T ss_pred hccchhhhhhhhcc---ccCCcCchHHHHHHHHHhCHHHHhcCC
Confidence 99999999874433 467899999999999999999997653
No 85
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.75 E-value=1e-17 Score=166.17 Aligned_cols=128 Identities=37% Similarity=0.604 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q psy7266 646 NNSELLNNLGNFINRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQ 724 (1175)
Q Consensus 646 ~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~ 724 (1175)
+|++|++++||+++|+.+++.+.+++.+|.. .+...|+|++++++.+++++.++|++|+|+.|++.+++|++.+|+|++
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~ 80 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID 80 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhc
Confidence 4778999999999999999999988877754 346679999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 725 TQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 725 ~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
..+||.+.+++ +..++..+++++.++++.++++|+|||||+||+||++|
T Consensus 81 ~~kpw~~~~~~--~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 81 ETAPWKLAKEE--DPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred cCCCHHHHccC--CHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999887542 23456778899999999999999999999999999875
No 86
>PLN02378 glutathione S-transferase DHAR1
Probab=99.74 E-value=1.1e-17 Score=180.96 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=122.5
Q ss_pred cCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc---C----CChHHH
Q psy7266 6 NRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS---K----FDTKNE 73 (1175)
Q Consensus 6 ~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p----~~~~~~ 73 (1175)
+..||++++|+++|.++|++|+.+.+++.... +||.|+||+|+ +||.+|+||.||++||. + .++.++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~-~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~ 95 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLK-IDDKWVTDSDVIVGILEEKYPDPPLKTPAEF 95 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEE-ECCEEecCHHHHHHHHHHhCCCCCCCCHHHH
Confidence 45799999999999999999999999986533 79999999996 67789999999999997 2 234455
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcC---CCCchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHHHhhC---C
Q psy7266 74 SAINQWLEWESVELFPSVLSFFDN---PKVLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYPLLSD---S 144 (1175)
Q Consensus 74 a~v~~wl~~~~~~l~p~~~~~~~~---g~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~~~~~---~ 144 (1175)
+.++.++. +.+..++.. .....+.+.+.|..||++|. ++|++|+++|+|||++++.+.++... .
T Consensus 96 a~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~ 168 (213)
T PLN02378 96 ASVGSNIF-------GTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHF 168 (213)
T ss_pred HHHHHHHH-------HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 55555433 222222211 11233567888999999997 68999999999999999998764311 1
Q ss_pred CCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 145 KVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
........||+|.+|+++|.++|++++++..
T Consensus 169 ~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~ 199 (213)
T PLN02378 169 KSWSVPESFPHVHNYMKTLFSLDSFEKTKTE 199 (213)
T ss_pred cCCCchhHhHHHHHHHHHHhcCCCeecccCC
Confidence 1112246899999999999999999987654
No 87
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.72 E-value=3.5e-17 Score=181.32 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=127.8
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---C----CChHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS---K----FDTKNES 74 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p----~~~~~~a 74 (1175)
..||++++++++|+++|++|+++.+++... .+||.|+||+|+. ||.+|+||.+|++||. | .++.+++
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~-d~~~L~ES~aI~~YL~e~~p~~~L~~~~era 149 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKL-DEKWVADSDVITQALEEKYPDPPLATPPEKA 149 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEE-CCEEEecHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 359999999999999999999999988652 3899999999974 5679999999999996 2 2456777
Q ss_pred HHHHHHHHHhhhchhhhhhhhcC---CCCchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHHHhhC---CCC
Q psy7266 75 AINQWLEWESVELFPSVLSFFDN---PKVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSD---SKV 146 (1175)
Q Consensus 75 ~v~~wl~~~~~~l~p~~~~~~~~---g~~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~---~~~ 146 (1175)
.+++|+... +..++.. +....+.+...|..||++|. ++||+|+++|+|||++++.|.++... ...
T Consensus 150 ~i~~~l~~~-------~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~ 222 (265)
T PLN02817 150 SVGSKIFST-------FIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKN 222 (265)
T ss_pred HHHHHHHHH-------HHHHhccCCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 777765422 1112111 11223567888999999997 79999999999999999998765321 111
Q ss_pred CCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHhccc
Q psy7266 147 RPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLKGS 183 (1175)
Q Consensus 147 ~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~kg~ 183 (1175)
......||+|.+|+++|.++|+|+.++.....+..||
T Consensus 223 ~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~ 259 (265)
T PLN02817 223 WSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGW 259 (265)
T ss_pred CCccccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHh
Confidence 1224689999999999999999999876554444444
No 88
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.70 E-value=4.7e-17 Score=175.42 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=122.0
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CCC---hH
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---KFD---TK 71 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~~---~~ 71 (1175)
+||++..||+|++|+++|.++|++|+.+.+...+ ..+||.|+||+|+.+||.+|+||.+|++||. |.. +.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~ 80 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGK 80 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCC
Confidence 5899999999999999999999999987765543 2478999999997689999999999999997 221 12
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc-----------------------CC---------CCchHHHHHHHHHHHHHhc-C
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD-----------------------NP---------KVLPDNLKTKLNVLNEAIS-N 118 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~-----------------------~g---------~~~~~~l~~~L~~Le~~L~-~ 118 (1175)
.+..+.+|+.+....+...+...+. .| ....+.+.+.|+.||++|. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 160 (209)
T TIGR02182 81 VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGP 160 (209)
T ss_pred ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCc
Confidence 4577888887755444332211110 00 1123467888999999999 9
Q ss_pred CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccch-hHHHHHHHHhcCHHH
Q psy7266 119 SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYT-NITPWYDRISKLPQV 169 (1175)
Q Consensus 119 ~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p-~L~~W~~rl~~~P~~ 169 (1175)
+|+.| .+|+|||++++.+.++..... ..+| ||.+|++||.+++.+
T Consensus 161 ~~l~g-~~TiADi~l~~~l~~~~~~~~-----~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 161 NAVNG-ELSEDDILVFPLLRNLTLVAG-----INWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred cccCC-CCCHHHHHHHHHhcCeeeecC-----CCCChHHHHHHHHHHHHhCC
Confidence 99965 699999999999988532211 1256 999999999988754
No 89
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.69 E-value=2.4e-16 Score=187.70 Aligned_cols=290 Identities=16% Similarity=0.244 Sum_probs=171.5
Q ss_pred CCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHH
Q psy7266 274 VLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKY 353 (1175)
Q Consensus 274 ~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~ 353 (1175)
.+|... +.-++|..+|+|||+|||||++++++ .+.+|| +|+..|+.-+||....| .....++
T Consensus 93 ~L~~ae-~g~V~tRFaPsPtG~LHIGharaall-n~~~Ar-----~~~G~~iLRidDTDpk~-----------~R~~~e~ 154 (567)
T PRK04156 93 PLPNAE-KGKVVMRFAPNPSGPLHLGHARAAIL-NDEYAK-----MYGGKFILRFEDTDPRT-----------KRPDPEA 154 (567)
T ss_pred CCCCCC-CCeEEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEeEccCCCCc-----------ccchHHH
Confidence 344432 34488889999999999999998887 999998 46677777777643322 3455677
Q ss_pred HHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCC
Q psy7266 354 FAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGD 433 (1175)
Q Consensus 354 ~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~ 433 (1175)
.+.|.++++|||+.+|..+++|+ |.+..+++..+|+++|++|.. +|...+ +... - ..|.
T Consensus 155 ~~~I~edL~wLGl~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C-----~cs~ee--~~~~-r-----------~~g~ 213 (567)
T PRK04156 155 YDMILEDLKWLGVKWDEVVIQSD--RLEIYYEYARKLIEMGGAYVC-----TCDPEE--FKEL-R-----------DAGK 213 (567)
T ss_pred HHHHHHHHHHcCCCCCCccCccc--CHHHHHHHHHHHHHcCCCccC-----CCCHHH--HHHH-H-----------hcCC
Confidence 78999999999999997767765 999999999999999999964 233321 1100 0 0011
Q ss_pred cccccCCccccc-------cccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 434 QCDGCGQLINAI-------ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 434 ~c~~~g~~~~~~-------el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
.| .|... .+. ++..+.. .+.....| ++++ . ..-...++
T Consensus 214 ~~-~~R~~-~~ee~l~~~e~m~~G~~--~~g~~vlR------~k~d------------------------~-~~~n~~~r 258 (567)
T PRK04156 214 PC-PHRDK-SPEENLELWEKMLDGEY--KEGEAVVR------VKTD------------------------L-EHPNPSVR 258 (567)
T ss_pred CC-CCcCC-CHHHHHHHHHHhhcCcc--ccCCeEEE------EECc------------------------c-cCCCCCcc
Confidence 11 01000 000 0000000 00011111 1110 0 00013467
Q ss_pred cEeeeccCCCCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCccc
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTK 581 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~ 581 (1175)
||.+-|... .+-|.++ ++. +|.. +.+.....+....+.|++ |.|+.. .|.. ++..+| +..
T Consensus 259 D~v~~R~~~--~~h~~~G--d~~~i~Pt-----Y~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~----l~~~Lg--~~~ 323 (567)
T PRK04156 259 DWVAFRIVK--TPHPRVG--DKYRVWPT-----YNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY----IYDYFG--WEY 323 (567)
T ss_pred ccEEEEEcC--CCccccC--CCeEEEEE-----eccCceeeecCCCCCeEEcccccccChHHHHH----HHHHcC--CCC
Confidence 888877632 2333332 222 4422 111111001112223444 666542 3332 333333 544
Q ss_pred CeEEEeeceeecCCCcccccC-------C--------CccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHh
Q psy7266 582 VNHIMATEYLNYEDGKFSKSR-------G--------TGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKN 646 (1175)
Q Consensus 582 p~~i~~~g~l~~~G~KMSKS~-------G--------N~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~ 646 (1175)
| .+.++++|+.+|.|||||+ | +..+...+.+.||.++++|.|++..+....|..|+|+.|.. .
T Consensus 324 P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~-~ 401 (567)
T PRK04156 324 P-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYA-I 401 (567)
T ss_pred c-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH-H
Confidence 4 5578889999999999999 4 23566778888999999999999887777899999999875 4
Q ss_pred hHHHHHHH
Q psy7266 647 NSELLNNL 654 (1175)
Q Consensus 647 n~~l~~~l 654 (1175)
|++.++..
T Consensus 402 nr~~ld~~ 409 (567)
T PRK04156 402 NRKLIDPI 409 (567)
T ss_pred HHHHHhcc
Confidence 55544433
No 90
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.69 E-value=6.5e-17 Score=175.10 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=120.9
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CCC--hHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS---KFD--TKNESAI 76 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~~--~~~~a~v 76 (1175)
+.||++++++++|.++|++|+++.+++... .+||.|+||+|+ ++|.+|+||.+|++||. +.. +... -
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~-~~g~~l~ES~aI~eYL~e~~~~~~~p~l~--p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT-YNTEVKTDVNKIEEFLEETLCPPRYPKLS--P 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEE-ECCEEeecHHHHHHHHHHHcCCCCCCCCC--C
Confidence 578999999999999999999999998763 279999999996 68899999999999997 210 1000 0
Q ss_pred HHHHHHHh-hhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-------------------CCcccCCCCCccch
Q psy7266 77 NQWLEWES-VELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-------------------NSFLIENSTTVADI 131 (1175)
Q Consensus 77 ~~wl~~~~-~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-------------------~~fLvG~~lTlADi 131 (1175)
..|..+.. ..+++.+..++.... .....+.+.|..||++|. ++||.|+++|+|||
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~ 173 (236)
T TIGR00862 94 KHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADC 173 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhH
Confidence 01111111 124444433332111 112347889999999984 58999999999999
Q ss_pred hHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 132 CIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 132 ~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++++.|.++... .........||+|.+|++++.++|+|+.++..-
T Consensus 174 ~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~ 221 (236)
T TIGR00862 174 NLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDD 221 (236)
T ss_pred HHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCCh
Confidence 999999886521 111123688999999999999999999975433
No 91
>KOG1695|consensus
Probab=99.68 E-value=4.5e-16 Score=163.09 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=140.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFD 69 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~ 69 (1175)
++|++++..+.+..+|+++++.|++||.+.+...+ ....|+|++|+|. .||..|.+|.||+|||+ +.+
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~-vDg~~i~QS~AI~RyLArk~gl~Gkt 82 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLE-VDGKKLVQSRAILRYLARKFGLAGKT 82 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEe-ECCEeeccHHHHHHHHHHHhCcCCCC
Confidence 58999999999999999999999999999988876 2245999999995 67999999999999996 889
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhc---CCCCc-------hHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHH
Q psy7266 70 TKNESAINQWLEWESVELFPSVLSFFD---NPKVL-------PDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 70 ~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~~~-------~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~ 136 (1175)
+.+.+++|+..+-........+...+. .|... .......+..+++.|. +.||+|+++|+||++++..
T Consensus 83 ~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~ 162 (206)
T KOG1695|consen 83 EEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEH 162 (206)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHH
Confidence 999999988877655444332333322 23321 2255778899999998 5799999999999999999
Q ss_pred HHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 137 L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+..+... ........+|+|.++..++.++|.+++.++.
T Consensus 163 l~~l~~~-~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~ 200 (206)
T KOG1695|consen 163 LDTLEEL-LDPSALDHFPKLKAFKERVSSIPNIKKYLES 200 (206)
T ss_pred HHHHHHh-cCchhhccChHHHHHHHHHhcCchHHHHHhc
Confidence 9987542 2334567889999999999999999998865
No 92
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.65 E-value=1.3e-16 Score=184.53 Aligned_cols=253 Identities=16% Similarity=0.230 Sum_probs=157.3
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH-------H---------
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL-------E--------- 341 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~-------~--------- 341 (1175)
...++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-.....|+|..+...+. +
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~ii-Gd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTII-GDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHH-HHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhh-hHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 35789999999999999999999999998 999999999999999999999999987754321 0
Q ss_pred ---------------cCC---Cc---------------------hhhHHH-HHHHHHHHHhhccccccccCCCCCHHHHH
Q psy7266 342 ---------------EGL---TP---------------------RQICDK-YFAIHREVYEWFEIDFDYFGRTSTPQQTE 381 (1175)
Q Consensus 342 ---------------~g~---~p---------------------~~~~~~-~~~~~~~~~~~lgi~~D~~~~T~~~~~~~ 381 (1175)
... .+ .+++.. +.+.+++.+.+|++.||.+...++..+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 000 00 011222 44567788999999999887555557888
Q ss_pred HHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEE
Q psy7266 382 IVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 382 ~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~ 461 (1175)
.+..++..|.++|++|+.+...+.... .+|+. .+.+.
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~~~---------------------~~g~~----------------------k~~Vl 212 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWIDLT---------------------KFGDD----------------------KDRVL 212 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEEGC---------------------CTSTS----------------------S-EEE
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEech---------------------hcCCC----------------------CcceE
Confidence 899999999999999986544432221 01110 11111
Q ss_pred eecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccC
Q psy7266 462 KSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFL 541 (1175)
Q Consensus 462 ~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~w 541 (1175)
+.+ .+......+.+.....+.. .+
T Consensus 213 ~ks---------------------DGt~~Y~trDiA~~~~r~~-----------------------------------~~ 236 (354)
T PF00750_consen 213 RKS---------------------DGTSTYLTRDIAYHLYRFE-----------------------------------EY 236 (354)
T ss_dssp EET---------------------TSEB-HHHHHHHHHHHHHC-----------------------------------CS
T ss_pred EcC---------------------CCceEEEcchHHHHHHHHh-----------------------------------hh
Confidence 111 1123334444443333200 01
Q ss_pred CCCCCCCcceEEEEeecccc-chhHhHHHHHHHHhCCC-cccCeEEEeeceee-cCCC-cccccCCCccCchhhhhc---
Q psy7266 542 PTATPQSKITLYQFMAKDNV-PFHSIMFPATLVAAGDQ-YTKVNHIMATEYLN-YEDG-KFSKSRGTGVFGNNAKDT--- 614 (1175)
Q Consensus 542 p~~~~~~~v~~~~~~GkD~i-~fh~~~~pa~l~~~~~~-~~~p~~i~~~g~l~-~~G~-KMSKS~GN~v~~~d~i~~--- 614 (1175)
..| .+++++|.||. .|+.++ +++..+|.. ....-..+..|+++ .+|+ |||+++||+|+++|+++.
T Consensus 237 ~~d------~~iyV~~~~q~~hf~~l~--~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~ 308 (354)
T PF00750_consen 237 GFD------KIIYVVGADQKGHFKQLF--AILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVE 308 (354)
T ss_dssp S-S------EEEEEEEGGGHHHHHHHH--HHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHH
T ss_pred ccc------cEEEEecCchhhHHHHHH--HHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHH
Confidence 122 45899999986 344443 455555531 11222345677774 5665 799999999999999981
Q ss_pred ----------------------CCCchhHHHHHHhcCCCCCCccccH
Q psy7266 615 ----------------------GLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 615 ----------------------~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
.+|.+++||++++..+ ..|+.|+|
T Consensus 309 ~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~-~~~~~Fdw 354 (354)
T PF00750_consen 309 RALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKR-NKDYVFDW 354 (354)
T ss_dssp HHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-T-TS-EEEEC
T ss_pred HHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccC-CCCceecC
Confidence 2677889999988555 47888886
No 93
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.65 E-value=1.5e-15 Score=148.05 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhc
Q psy7266 648 SELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQ 726 (1175)
Q Consensus 648 ~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~ 726 (1175)
.+++++++|+++|+.+++.+.+++.+|...++..|+|++++++.+++++.++|++|+|+.|++.+ +.|.+.+|+|++..
T Consensus 3 ~~~~~~~~~~l~R~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 3 EEEANSAILRLERFYELAEELIETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999998776655544456789999999999999999999999999999997 99999999999998
Q ss_pred CcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 727 QPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 727 kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+||. ...++.++++.+++||+|||||+||+||++|
T Consensus 83 ~~~~--------------~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 83 GAGM--------------NKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred Cccc--------------hHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 9870 1235689999999999999999999999875
No 94
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.64 E-value=2e-16 Score=177.20 Aligned_cols=266 Identities=17% Similarity=0.285 Sum_probs=120.9
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcch--------HHH-----------HHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT--------ATE-----------TKAL 340 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~--------~ie-----------~~a~ 340 (1175)
+..++|-++ -.|||.+||||++..+. +|+++|-+|.+|++|.+++.+|++.- |-. ..-.
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~-~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLR-ADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHH-HHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CccEEEecC-CCCCCCcccccccchhh-HHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 344555555 59999999999997665 99999999999999999999999842 111 0001
Q ss_pred HcCCCchhhHHHHHHHHHHHHhhccccccccCCCC---CHHHHHHHHHHHHHHHHcCCEEec----eEEEeeeCCCCccc
Q psy7266 341 EEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTS---TPQQTEIVQHLFDRVHKAGFTSSA----SVEQLHCAQCDRFL 413 (1175)
Q Consensus 341 ~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~---~~~~~~~v~~~f~~L~~~G~iy~~----~~~~~~c~~~~~~l 413 (1175)
-.|. ...++++|...+.+.|+.|||.++..+.|. +..|.+.+..++.+-.+-.-|... .....|+|
T Consensus 100 P~G~-~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~P------ 172 (360)
T PF01921_consen 100 PFGC-HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSP------ 172 (360)
T ss_dssp TTSS-SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--S------
T ss_pred CCCC-CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeee------
Confidence 1122 345789999999999999999998876442 334555554443332221111100 01111111
Q ss_pred ccceecccCCCccccCCCCCcccccCCcccc--------ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhc
Q psy7266 414 ADRFVEGVCPKCRYEDARGDQCDGCGQLINA--------IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET 485 (1175)
Q Consensus 414 ~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~--------~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~ 485 (1175)
+--.|++||++... ...+..+|..||+.-+.-...-- .+|.---+
T Consensus 173 -----------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~WkvD--------- 225 (360)
T PF01921_consen 173 -----------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQWKVD--------- 225 (360)
T ss_dssp -----------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE-HHHH---------
T ss_pred -----------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccccCCCc---------
Confidence 11234444543211 11123456667766654322211 22210000
Q ss_pred CCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhH
Q psy7266 486 SDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHS 565 (1175)
Q Consensus 486 ~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~ 565 (1175)
|+ ..|.. ...+ +-..||||..--.
T Consensus 226 ---W~-------mRW~~--------------------------------------lgVd--------fEp~GKDH~~~GG 249 (360)
T PF01921_consen 226 ---WP-------MRWAA--------------------------------------LGVD--------FEPFGKDHASPGG 249 (360)
T ss_dssp ---HH-------HHHHH--------------------------------------TT-S--------EEEEEHHHHCTTS
T ss_pred ---Ch-------hhhhh--------------------------------------cCce--------eccCCCccCCCCC
Confidence 11 12321 1112 5678999876222
Q ss_pred hHHHHHHHH-hCCCcccCeEEEeeceeecCCC-cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHH
Q psy7266 566 IMFPATLVA-AGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQ 640 (1175)
Q Consensus 566 ~~~pa~l~~-~~~~~~~p~~i~~~g~l~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~ 640 (1175)
.+-.+--.+ --++..+|. -+..+|++.+|+ |||||+||+|++.|+++- +.+++|||++++..|. +..+|+.+
T Consensus 250 S~d~~~~I~~~i~g~~pP~-~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~-~~PE~lr~l~~~~~P~-~~~~~~~~ 323 (360)
T PF01921_consen 250 SYDTSKRIAREILGYEPPV-PFPYEFFLDKGGGKMSSSKGNGITPEEWLEY-APPESLRYLMARTKPN-KAKDFSFD 323 (360)
T ss_dssp HHHHHHHHHHHCC-----E-EEEE--EEES--------------HHHHHTT-S-HHHHHHHHHCS-TT-S-EEE--S
T ss_pred ChhhHHHHHHHHhCCCCCC-CCCeeEEEeCCCcccccCCCCccCHHHHHHh-cCHHHHHHHHcccCCC-cceEeccC
Confidence 222222222 112455554 456788877776 999999999999999996 8999999999985554 56666666
No 95
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.3e-15 Score=168.73 Aligned_cols=267 Identities=16% Similarity=0.329 Sum_probs=152.7
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcch--------HH-HHHHHHcCC-------
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT--------AT-ETKALEEGL------- 344 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~--------~i-e~~a~~~g~------- 344 (1175)
..++|-++ -.|||.+|||+++..+ .+|+++|-+|.+|+.|.+++=+|++.- |- +...+-.|.
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~-t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVL-TADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHH-HHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 34555555 5999999999999755 599999999999999999999999842 11 111112222
Q ss_pred ---CchhhHHHHHHHHHHHHhhccccccccCCCC---CHHHHHHHHHHHHHHHHcCCE---EeceEEEeeeCCCCccccc
Q psy7266 345 ---TPRQICDKYFAIHREVYEWFEIDFDYFGRTS---TPQQTEIVQHLFDRVHKAGFT---SSASVEQLHCAQCDRFLAD 415 (1175)
Q Consensus 345 ---~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~---~~~~~~~v~~~f~~L~~~G~i---y~~~~~~~~c~~~~~~l~d 415 (1175)
.+..++++|...|.+.++.|||.+.+.+.|. .-.|.+.+..++.+-.+-.-| |++. .+.+
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~-----------~~~e 165 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR-----------ELEE 165 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC-----------cccC
Confidence 2345778888899999999999999875431 223444444443333221111 1111 1111
Q ss_pred ceecccCCCccccCCCCCcccccCCccccc--c-----ccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC
Q psy7266 416 RFVEGVCPKCRYEDARGDQCDGCGQLINAI--E-----LIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ 488 (1175)
Q Consensus 416 ~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~--e-----l~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~ 488 (1175)
.+. .+-..|++||+..... + -+..+|. ||+.-+. ++. ..
T Consensus 166 ~~~-----------P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~v--------~ir-----------~g--- 211 (521)
T COG1384 166 DWS-----------PFMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGEV--------DIR-----------GG--- 211 (521)
T ss_pred Cce-----------eccccccccCCcceeEEEEecCCceEEEEec-CCcccee--------ecc-----------cc---
Confidence 111 1233566666643211 0 1111222 3332221 100 00
Q ss_pred CCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHH
Q psy7266 489 WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMF 568 (1175)
Q Consensus 489 ~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~ 568 (1175)
.+ .+.|-+..|. +|+--. |+ +-..||||.---..|=
T Consensus 212 --------------~~--------KL~WRvdWp~----------------RW~~lg-----Vd-~EPfGKDH~a~ggSyd 247 (521)
T COG1384 212 --------------EG--------KLPWRVDWPM----------------RWAALG-----VD-FEPFGKDHAAAGGSYD 247 (521)
T ss_pred --------------Cc--------ccccCcCccc----------------hhhccC-----cc-cccCCcccccccCchH
Confidence 00 1223333332 223222 11 4567999985444443
Q ss_pred HHHHHHh-CCCcccCeEEEeeceeecCC-CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHH
Q psy7266 569 PATLVAA-GDQYTKVNHIMATEYLNYED-GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQD 641 (1175)
Q Consensus 569 pa~l~~~-~~~~~~p~~i~~~g~l~~~G-~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~ 641 (1175)
.+...+- -+++.+|..+ ..+|+.++| +|||||+||+|.+.|+++- ++++.|||++++..|. +..+|+.+.
T Consensus 248 tg~~I~~ei~g~~pP~~~-~YE~i~lkg~~~mSsSkG~~i~~~dwlev-~~pE~lry~~~r~kP~-r~~~~d~~~ 319 (521)
T COG1384 248 TGKRIAREIFGYEPPVPF-VYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTKPN-RHIDFDFDL 319 (521)
T ss_pred HHHHHHHHhcCCCCCCCC-ceEEEEecCCcccccCCCcEEcHHHHHHh-cCHhHeeeeeeecCCC-cceecCCCC
Confidence 3333322 1245556544 577887666 8999999999999999997 8999999999986554 445555443
No 96
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.61 E-value=3.4e-15 Score=150.91 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=73.7
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
|+.+.|||||.+||||+++.++ +|+++||+|++|++|.+++|+|++|.++...+.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~-~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVT-FDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHH-HHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998766 9999999999999999999999999999999999999999999999999999998
No 97
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.57 E-value=6e-15 Score=173.62 Aligned_cols=283 Identities=15% Similarity=0.161 Sum_probs=163.3
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
.-++|..+|.|||+|||||++++++ +..+||-+ .|. |+.=+ ++++|.....+|.+.|.+++
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAll-n~l~Ar~~--gG~---~iLRi-------------EDTDp~R~~~e~~~~I~~dL 70 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALL-NDYYARRY--KGR---LILRF-------------DDTNPSKEKAEFEESIIEDL 70 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------CCCCCCccchHHHHHHHHHH
Confidence 3489999999999999999998887 99999853 333 33333 45788888899999999999
Q ss_pred hhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcc-cccceecccCCCccccCCCCCcccccCC
Q psy7266 362 EWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRF-LADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 362 ~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~-l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
+|||+.+|..+++++ |.+..+++..+|+++|++|.. +|...+-- .......+.|-....+.
T Consensus 71 ~WLGl~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~~~R~~s~ee----------- 132 (523)
T PLN03233 71 GKIEIKPDSVSFTSD--YFEPIRCYAIILIEEGLAYMD-----DTPQEEMKKERADRAESKHRNQSPEE----------- 132 (523)
T ss_pred HHhCCCCCCCccccc--cHHHHHHHHHHHHHcCCeEec-----CCCHHHHHHHHhhhccCccccCCHHH-----------
Confidence 999999997666665 999999999999999999975 34432110 00000011110000000
Q ss_pred ccccccccCCccc--CCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCc
Q psy7266 441 LINAIELIQPRCK--QCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGI 518 (1175)
Q Consensus 441 ~~~~~el~~~~c~--r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~ 518 (1175)
..++-...|. .-+.....|..- ++.. .... ++||.|=|... +
T Consensus 133 ---~l~~~~~m~~G~~~~~~~~lR~K~----d~~~---------~n~~------------------~~D~Vi~R~d~--~ 176 (523)
T PLN03233 133 ---ALEMFKEMCSGKEEGGAWCLRAKI----DMQS---------DNGT------------------LRDPVLFRQNT--T 176 (523)
T ss_pred ---HHHHHHHHhcccccCCCeEEEEeC----cccC---------CCCC------------------CcCCEEEEEcC--C
Confidence 0000000010 011222222111 1100 1111 12334444321 1
Q ss_pred ccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCcccCeEEEeeceeec
Q psy7266 519 PVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTKVNHIMATEYLNY 593 (1175)
Q Consensus 519 piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~ 593 (1175)
|-|-.+ +++ +|.. +-+.....+....+.|++ |.|++. .|.. ++.++| +..|.. ...+.++.
T Consensus 177 ~h~~~G--d~~~~~Pt-----Y~fA~~VDD~l~gITHviRg~E~~~~t~~q~~----l~~aLg--~~~P~~-~~f~rln~ 242 (523)
T PLN03233 177 PHHRSG--TAYKAYPT-----YDLACPIVDSIEGVTHALRTTEYDDRDAQFFW----IQKALG--LRRPRI-HAFARMNF 242 (523)
T ss_pred cccccC--Ccccceec-----cCCceeeeccccCCCeEEechhhhcCCHHHHH----HHHHhC--CCCCee-eeeEEECC
Confidence 111110 000 0000 001110001222334555 777663 3333 334444 566765 44677889
Q ss_pred CCCcccccC------CCcc---------CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHH
Q psy7266 594 EDGKFSKSR------GTGV---------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLN 652 (1175)
Q Consensus 594 ~G~KMSKS~------GN~v---------~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~ 652 (1175)
.|.||||++ .+.| +...+.++||.++++|-|++..+....|..++|+.|.. .|++.++
T Consensus 243 ~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~-~nR~~ld 315 (523)
T PLN03233 243 MNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWA-ENKKEID 315 (523)
T ss_pred CCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHH-HHHHHhc
Confidence 999999997 3444 46778889999999999999999888899999999875 3444333
No 98
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.54 E-value=9.7e-14 Score=148.80 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=78.7
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||++||||++++++ .++++| ++++.|+.-+||...+.. .....+.+.|.++++|
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~-~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~w 64 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAIL-NGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEW 64 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHH
Confidence 46788899999999999998887 999998 678888888887643321 1456667779999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
||+.+|...+.+ ++.+..+++.++|.++|++|.
T Consensus 65 LGl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 65 LGVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred cCCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 999888655555 489999999999999999996
No 99
>KOG4420|consensus
Probab=99.53 E-value=2.7e-14 Score=147.57 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=129.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHcC-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLSK----- 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p----- 67 (1175)
|.||++|.|..+++||+++.++||+++...|++..++ +||.|.||||+ ++..+|.++.-|+.||..
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~-~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLI-HGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEe-cCCeecccHHHHHHHHHHhhccc
Confidence 6799999999999999999999999999999988754 78999999995 888999999999999851
Q ss_pred -----C-ChH--HHHHHHHHHH-------HHhhh-chhhhhh------------hhc-----------C--CC-------
Q psy7266 68 -----F-DTK--NESAINQWLE-------WESVE-LFPSVLS------------FFD-----------N--PK------- 99 (1175)
Q Consensus 68 -----~-~~~--~~a~v~~wl~-------~~~~~-l~p~~~~------------~~~-----------~--g~------- 99 (1175)
. +.. .+....+-+. |..+. +.|.+.. .+. . ..
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~a 185 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLA 185 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 1 111 1111111000 11100 0111100 000 0 00
Q ss_pred -------------------CchHHHHHHHHHHHHHhc-----CCcccCCCCCccchhHHHHHHHHhhCCCCC--CCcccc
Q psy7266 100 -------------------VLPDNLKTKLNVLNEAIS-----NSFLIENSTTVADICIWTCVYPLLSDSKVR--PLLSSY 153 (1175)
Q Consensus 100 -------------------~~~~~l~~~L~~Le~~L~-----~~fLvG~~lTlADi~l~~~L~~~~~~~~~~--~~~~~~ 153 (1175)
+..+++...|+.+|..|. .+||+|++||+||+.+..+|+++....... ....+.
T Consensus 186 kqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsr 265 (325)
T KOG4420|consen 186 KQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSR 265 (325)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCC
Confidence 123456777888888887 479999999999999999999986544432 223578
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHhc
Q psy7266 154 TNITPWYDRISKLPQVQKALKTWTEVLK 181 (1175)
Q Consensus 154 p~L~~W~~rl~~~P~~~~~l~~~~~~~k 181 (1175)
|||..||.|+..+++|.++++.+..++.
T Consensus 266 pnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 266 PNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred ccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 9999999999999999999998866554
No 100
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.52 E-value=6.3e-14 Score=162.70 Aligned_cols=271 Identities=16% Similarity=0.201 Sum_probs=160.4
Q ss_pred EccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcc
Q psy7266 286 TSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFE 365 (1175)
Q Consensus 286 ~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lg 365 (1175)
|...|.|||+|||||++++++ +..+||-+ .|.=++. + +++++.....++.+.|.++++|||
T Consensus 2 ~RFAPSPTG~LHiG~artAL~-n~l~Ar~~--gG~fiLR---i-------------EDTD~~R~~~e~~~~I~~~L~WlG 62 (433)
T PRK12410 2 LRFAPSPTGDMHIGNLRAAIF-NYIVAKQQ--NEDFLIR---I-------------EDTDKERNIEGKDKEILEILNLFG 62 (433)
T ss_pred CccCCCCCCcccHHHHHHHHH-HHHHHHHc--CCEEEEE---e-------------CcCCCCcCChHHHHHHHHHHHHcC
Confidence 345678999999999999887 88888853 3433332 3 446666677889999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-cee---cccCCCccccCCCCCcccccCCc
Q psy7266 366 IDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RFV---EGVCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 366 i~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~V---~g~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
+++|--++.++ +.+.-+++..+|+++|.+|.. ||... -+.. +.. .|.-| .| .| .|..+
T Consensus 63 l~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C-----~cs~e--el~~~r~~~~~~g~~~--~Y---~g----~cr~l 124 (433)
T PRK12410 63 ISWDKLVYQSE--NLKFHRQMAEKLLSEKKAFAC-----FCSEE--ELEAKKEKAKNEKKPY--RY---DG----TCENL 124 (433)
T ss_pred CCCCCCeehhc--cHHHHHHHHHHHHHcCCeeee-----cCCHH--HHHHHHHHHhhcCCCC--CC---Cc----hhhCC
Confidence 99997655554 778889999999999999964 34442 1111 000 01000 00 00 11111
Q ss_pred cccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccC
Q psy7266 442 INAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521 (1175)
Q Consensus 442 ~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP 521 (1175)
...+. ...|.+.++| |+++. ... .|.+..+..+. +-...+.||.|-|.-. +|
T Consensus 125 -~~~e~-----~~~g~~~~iR------~k~p~---~~~--------~f~D~v~G~i~-~~~~~~~D~Vi~R~Dg----~P 176 (433)
T PRK12410 125 -EDDEV-----LNCNKPFVVR------LKKPN---HTM--------SFTDAIKGEVS-FEPDEIDSFVILRADK----TP 176 (433)
T ss_pred -CHhHH-----HhcCCCeEEE------EEcCC---Cce--------eeeeccceeEE-eccccCCCeEEEcCCC----Cc
Confidence 00000 1123333433 22221 000 01111111110 0014567999988733 45
Q ss_pred CCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCC
Q psy7266 522 LPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDG 596 (1175)
Q Consensus 522 ~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~ 596 (1175)
.+++-.-| | +....+.|++ |.|++ +-|..++-+ + ++..|..+.++.++ +.+|+
T Consensus 177 tY~fA~vV--------------D--D~~mgIThViRG~d~l~~tp~Qi~Ly~a----L--g~~~pp~f~Hlpli~~~~g~ 234 (433)
T PRK12410 177 TYNFACAV--------------D--DMLYDISLIIRGEDHVSNTPKQILIREA----L--GYNKEITYAHLPIILNEEGK 234 (433)
T ss_pred cccccchh--------------c--hhhcCCCEEEechhhhhCcHHHHHHHHH----c--CCCCCCeEEEeeeeeCCCCC
Confidence 44311111 1 2344456777 88877 455555443 3 46655455555654 78999
Q ss_pred cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 597 KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
||||+.|. +...++.+.||.+++++-||+..+....+--|+.+++.+
T Consensus 235 KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~ 281 (433)
T PRK12410 235 KMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIE 281 (433)
T ss_pred eeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHH
Confidence 99999984 678889999999999999999876443355567666554
No 101
>PLN02859 glutamine-tRNA ligase
Probab=99.51 E-value=4.4e-14 Score=171.63 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=77.1
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ ...+||.+ .|. |+.-+ ++++|.....+|.+.|.++++|
T Consensus 265 V~tRFaPsPtG~LHiGharaall-N~~~Ar~~--~G~---~~LRi-------------eDTdp~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFV-DFGLAKER--GGC---CYLRF-------------DDTNPEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEe-------------cCCCCCccchHHHHHHHHHHHH
Confidence 78999999999999999998887 99999864 332 33333 4578888889999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|..++++ .|.+...+...+|+++|++|..
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEec
Confidence 998877655555 4776667788899999999974
No 102
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.51 E-value=1.3e-13 Score=134.09 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPE---ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~---~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
....||++|+..++.+++++.+|. ......|+|+++.++.+++++.++|++|+|++|++.+++|.+.+|+|++...|
T Consensus 7 ~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~p 86 (117)
T cd07958 7 EGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKDAQ 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccccc
Confidence 357888889888888776665553 23566899999999999999999999999999999999999999999876554
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 729 WVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 729 w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+++++.++++.++++|+|||||+|++||++|
T Consensus 87 ----------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 87 ----------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred ----------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 3456689999999999999999999999875
No 103
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.51 E-value=2.3e-13 Score=162.24 Aligned_cols=287 Identities=15% Similarity=0.255 Sum_probs=168.8
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
+.+|.. ...-++|..+|.|||+|||||++++++ ++.+|| .|+..|+.-+|| ++|.....+
T Consensus 84 ~~L~~a-~~~~vvtRFaPsPtG~LHiGharaall-n~~~Ar-----~~~G~~iLRidD-------------TDp~R~~~e 143 (560)
T TIGR00463 84 IELPGA-KMGEVVMRFAPNPSGPLHIGHARAAIL-NQYFAK-----KYKGKLIIRFDD-------------TDPRRVKPE 143 (560)
T ss_pred CCCCCC-cCCeeEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----hcCCEEEEEeCc-------------CCcccccHH
Confidence 445542 234589999999999999999998887 999997 345566666665 566666778
Q ss_pred HHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCC
Q psy7266 353 YFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARG 432 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G 432 (1175)
|.+.|.++++|||+.+|...++++ |.+...++..+|+++|++|.. +|...+ +...- ..|
T Consensus 144 ~~~~I~edL~wLGi~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C-----~cs~ee--i~~~r------------~~g 202 (560)
T TIGR00463 144 AYDMILEDLDWLGVKGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVC-----DCPPEE--FRELR------------NDG 202 (560)
T ss_pred HHHHHHHHHHHcCCCCCccccccc--cHHHHHHHHHHHHHcCCceee-----cCCHHH--HHHHH------------hCC
Confidence 999999999999999997767765 999999999999999999975 233311 10000 001
Q ss_pred CcccccCCcc-cc-----ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 433 DQCDGCGQLI-NA-----IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 433 ~~c~~~g~~~-~~-----~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
..| .|.... +. .++..+. -.+....+| ++++ + ..-...++
T Consensus 203 ~~~-~cR~~s~eenl~~fe~m~~g~--~~~~~~~lR------~K~d------------------------~-~~~n~~~r 248 (560)
T TIGR00463 203 VAC-ACRDRSVEENLEIWEEMLNGT--EEGGKVVVR------AKTD------------------------Y-KHKNPAIR 248 (560)
T ss_pred CCC-CccCCCHHHHHHHHHHHhccc--ccCCCeEEE------EECC------------------------C-cCCCcccc
Confidence 101 011000 00 0000000 001111111 1110 0 00113567
Q ss_pred cEeeeccCCCCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCccc
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTK 581 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~ 581 (1175)
||.|-|... .|-|..+ +++ +|.. |.---+.+ +....+.|++ |.|++. -|..+|-+ . ++.+
T Consensus 249 D~V~~R~~~--~~h~~~G--d~~~~~Pt---YdfA~~VD--D~l~gITHviRg~E~~~nT~rq~yl~~~----l--g~~~ 313 (560)
T TIGR00463 249 DWVIFRINK--TPHPRTG--DKYKVYPT---MDFSVPID--DHLLGVTHVLRGKDHIDNERKQQYIYMY----F--GWEL 313 (560)
T ss_pred CcEEEEecC--CCccccC--CEEEEEec---cccceEee--cccCCCCeEEechhhhcCCHHHHHHHHH----c--CCCC
Confidence 888888653 2323222 222 3321 00000111 1222234555 777664 45555533 2 2444
Q ss_pred CeEEEeeceeecC-CCcccccCC-------Cc--------cCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q psy7266 582 VNHIMATEYLNYE-DGKFSKSRG-------TG--------VFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATK 645 (1175)
Q Consensus 582 p~~i~~~g~l~~~-G~KMSKS~G-------N~--------v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~ 645 (1175)
| ...+++++..+ |.|+|||+. .+ .+...+...||.++++|-|++..+....|..++|+.|..
T Consensus 314 P-~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~- 391 (560)
T TIGR00463 314 P-EFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYA- 391 (560)
T ss_pred C-eEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHH-
Confidence 4 56667888655 559999873 11 234556678999999999999999888899999999864
Q ss_pred hhHHHH
Q psy7266 646 NNSELL 651 (1175)
Q Consensus 646 ~n~~l~ 651 (1175)
.|+..+
T Consensus 392 ~nr~~i 397 (560)
T TIGR00463 392 FNKKII 397 (560)
T ss_pred HHHHHh
Confidence 344433
No 104
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.51 E-value=3.3e-13 Score=142.07 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=98.6
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q psy7266 638 SWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE------ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRY 711 (1175)
Q Consensus 638 ~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~------~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~ 711 (1175)
+.+.+.+ ..++++++|| +.+|+.....+..+. ..+...|+|++++++.+++++.++|++|+|+.|++.
T Consensus 2 ~~~~~~~--~~~~~~Kl~N----~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~ 75 (180)
T cd07960 2 SDEILKQ--VAEAYRKIRN----TFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQA 75 (180)
T ss_pred CHHHHHH--HHHHHHHHHH----HHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444443 2446666666 455554443332111 235678999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 712 ILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 712 i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
+++|+ ++||+|++..+||.+.... .+..+ ..+..++..+++.+++||+|||||+||+||++|+.
T Consensus 76 i~~f~~~~l~n~Yi~~~k~~~~~~~~-~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 76 LNNFCTVDLSAFYLDIIKDRLYCDAK-DSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHhcccceecCCC-CCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 99997 5999999999999763211 11112 33455678889999999999999999999999975
No 105
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.2e-14 Score=166.80 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=80.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|+|..+|.|||+|||||++++++ +..+||.+ .|. |+.=+ ++++|.....++.+.|.++|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~-N~~~Ar~~--~G~---fiLRi-------------EDTD~~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALL-NYLYARKY--GGK---FILRI-------------EDTDPERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHH-HHHHHHHh--CCE---EEEEe-------------cCCCCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999887 99999864 333 22222 5578888888999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|- .++.| ++.+..+++..+|+++|++|..
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEe
Confidence 9999998 45665 4999999999999999999964
No 106
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.48 E-value=2.6e-13 Score=158.40 Aligned_cols=277 Identities=16% Similarity=0.170 Sum_probs=160.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||- ++-.|+.-+|| +++....+.+.+.|.++|+|
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~-n~l~Ar~-----~gG~fiLRIED-------------TD~~Rs~~~~~~~I~e~L~w 63 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALL-NWLYARK-----HGGKFILRIDD-------------TDLERSKQEYADAIAEDLKW 63 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHH-HHHHHHH-----hCCEEEEEecc-------------CCcccchHHHHHHHHHHHHH
Confidence 56778899999999999998887 7777774 33345544544 45555668899999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccce---ecccCCCccccCCCCCcccccCC
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRF---VEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~---V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
|||.+|.+++.++ ..+.++.+..+|.++|++|.. ||...+-- ..+. -.|..|. | .. .|..
T Consensus 64 LGI~~De~y~QSe--r~~~y~~~~e~L~e~G~AY~C-----~Ct~eel~-~~r~~~~~~~~~~~--y----~~---~cr~ 126 (445)
T PRK12558 64 LGINWDRTFRQSD--RFDRYDEAAEKLKAAGRLYPC-----YETPEELE-LKRKIQLSRGLPPI--Y----DR---AALK 126 (445)
T ss_pred cCCCCCccccHHH--HHHHHHHHHHHHHHCCCEEEe-----cCchHHHH-HHHHHHHhCCCCCC--C----Cc---cccc
Confidence 9999997655443 456899999999999999975 45543210 0000 0111110 0 00 1211
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCccc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPV 520 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~pi 520 (1175)
+. ..+.. .-...|.+.++| |++.. ....|....+..+. +-...+.|+.|=|.- | .
T Consensus 127 l~-~~~~~--~~~~~g~~~~iR------~k~~~-----------~~~~~~D~i~G~~~-~~~~~~~D~Vi~R~d--g--~ 181 (445)
T PRK12558 127 LT-EEEKA--ALEAEGRKPHWR------FKLDD-----------EPISWDDLIRGEQS-IDAASLSDPVLIRAD--G--S 181 (445)
T ss_pred CC-HHHHH--hHHhcCCCceEE------EecCC-----------CceEEEEEeeeEee-cccccCCCeEEEecC--C--C
Confidence 10 00000 000113333333 11110 00012221111110 001346788888864 3 3
Q ss_pred CCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEEeecee-ecCC
Q psy7266 521 PLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYED 595 (1175)
Q Consensus 521 P~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G 595 (1175)
|.+++-.-| | +....+.|++ |.|++ +-|..++-+ + ++..|... +.+++ +.+|
T Consensus 182 PtY~fA~vV--------------D--D~~m~ITHViRG~d~l~~t~~q~~l~~a----l--g~~~P~f~-H~pli~~~~g 238 (445)
T PRK12558 182 YLYTLPSVV--------------D--DIDMGITHIIRGEDHVTNTAVQIQIFEA----L--GAKPPVFA-HLSLLTGADG 238 (445)
T ss_pred cccccccee--------------c--cccCCCCEEEechhhhhCCHHHHHHHHH----h--CCCCCeEE-EcccccCCCc
Confidence 655421111 1 2344456777 88876 455555444 3 36666444 34444 6789
Q ss_pred CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC-CCCccccHHHHHHH
Q psy7266 596 GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE-NQDTSFSWQDLATK 645 (1175)
Q Consensus 596 ~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~-~~D~~f~~~~~~~~ 645 (1175)
+|+||+.|. ++..++.+.||-+++++-||+..+.. +.+.-|+.+++.+.
T Consensus 239 ~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 239 KGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAES 288 (445)
T ss_pred ccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHh
Confidence 999999885 68889999999999999999886532 33344788877643
No 107
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.48 E-value=1.9e-13 Score=161.52 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=159.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||.+ .|. |+.-+ ++++|.....+|.+.|.++++|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~-n~~~Ar~~--~G~---~iLRi-------------eDTd~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICL-NFGLAQDY--GGK---CNLRF-------------DDTNPEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------CCCCCCcCChHHHHHHHHHHHH
Confidence 78999999999999999999887 99999853 232 33333 4577888888999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
||+.+|. .+++++ |.+...+...+|+++|++|.. +|...+-- ..+.-. ...|..|.......
T Consensus 91 LGi~~d~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c-----~cs~eei~-~~R~~~---------~~~g~~~~~R~~s~ 153 (554)
T PRK05347 91 LGFDWSGELRYASD--YFDQLYEYAVELIKKGKAYVD-----DLSAEEIR-EYRGTL---------TEPGKNSPYRDRSV 153 (554)
T ss_pred cCCCCCCCceeeec--CHHHHHHHHHHHHHcCCEeeC-----CCCHHHHH-HHhhhh---------hhcCCCCCccCCCH
Confidence 9999964 344554 888888888999999999975 34432110 000000 01121111001100
Q ss_pred cc-----ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 443 NA-----IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 443 ~~-----~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
+. .++..+... +...++|. +++ +.. + + -.++||.|-|...=
T Consensus 154 eenl~~~~~m~~G~~~--~g~~vlR~------Kid---------~~~-----~-n----------~~~rD~Vi~R~~~~- 199 (554)
T PRK05347 154 EENLDLFERMRAGEFP--EGSAVLRA------KID---------MAS-----P-N----------INMRDPVLYRIRHA- 199 (554)
T ss_pred HHHHHHHHHHHCCCCC--CCcEEEEE------Eee---------ccC-----C-C----------CCCCCCEEEEecCC-
Confidence 00 011111111 11223231 110 000 0 0 24678888875421
Q ss_pred cccCCCCCCCceEEecCccccccCCCC-----CCCCcceEEEEe-eccccchhHhHHHHHHHHhCCCcccCeEEEeecee
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTA-----TPQSKITLYQFM-AKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL 591 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~-----~~~~~v~~~~~~-GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l 591 (1175)
|=|-.+ ++. . .||.- ..+....+.|++ |.|+... +.....++.++| +..+-+++..+++
T Consensus 200 -~H~r~G--~k~--~-------iyPtYdfA~~vdD~l~gITHvlRg~E~~~~-t~~~~~i~~alg--~~~~P~~~~F~rl 264 (554)
T PRK05347 200 -HHHRTG--DKW--C-------IYPMYDFAHCISDAIEGITHSLCTLEFEDH-RPLYDWVLDNLP--IPPHPRQYEFSRL 264 (554)
T ss_pred -CCCccC--Cce--e-------eecCcCccceeeccccCCceEEeccccccC-hHHHHHHHHHcC--CCCCCceEEEEEE
Confidence 111111 000 0 02211 001222334555 6665532 121222344443 2212344556678
Q ss_pred ecCCCcccccCCC------cc---------CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 592 NYEDGKFSKSRGT------GV---------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 592 ~~~G~KMSKS~GN------~v---------~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
+.+|.|||||++. .| +...+.++||.++|+|-|++..+....|..++|+.|..
T Consensus 265 n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~ 332 (554)
T PRK05347 265 NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLES 332 (554)
T ss_pred CCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHH
Confidence 9999999999964 12 57778889999999999999998888899999998864
No 108
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.47 E-value=2.1e-12 Score=153.96 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=74.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|...|.|||+|||||++++.+ +..+||- ..|. |+.-+ +++++.....++.+.|.++++|
T Consensus 2 v~~RfAPsPtG~lHiG~~rtal~-n~l~Ar~--~~G~---~iLRi-------------eDtD~~R~~~~~~~~i~~~L~w 62 (470)
T TIGR00464 2 VRTRFAPSPTGYLHIGGARTALF-NYLFAKH--TGGE---FILRI-------------EDTDLERNIEEAEEAILEGLKW 62 (470)
T ss_pred ceEeeCCCCCCcccHHHHHHHHH-HHHHHHH--cCCE---EEEEe-------------CcCCCccCChHHHHHHHHHHHH
Confidence 46778889999999999998887 8888884 2333 33333 3466677778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||.+|- .++.+ ++.+..+++..+|+++|++|..
T Consensus 63 lGl~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 63 LGISWDEGPYYQS--QRLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred CCCCCCCCeeehh--CCHHHHHHHHHHHHHcCCEEec
Confidence 9999993 33444 3677888999999999999964
No 109
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.47 E-value=7.3e-13 Score=132.52 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=98.3
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy7266 637 FSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI-PEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI 715 (1175)
Q Consensus 637 f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~-p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~ 715 (1175)
|+.+.+... ..+++.++|++..+..++. ..+... +.......|.++++.++.+++.+.++|++++|++|++.++++
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~ 77 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLE-DDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEF 77 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHccc-ccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455555432 3456667776553211100 111000 112345678999999999999999999999999999999999
Q ss_pred HH--HHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 716 SR--YCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 716 ~~--~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+. .+|+|++..+||.+. .+ ..++.++++++.++++.++++|+|||||+|++||++|
T Consensus 78 ~~~~~~N~Yi~~~~pW~~~-~~---~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 78 FWNDFCDWYLELVKPRLYG-ED---EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHhHHHHHHhhHHHcC-CC---hHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 75 899999999999873 22 2256778889999999999999999999999999875
No 110
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.47 E-value=3.2e-13 Score=160.62 Aligned_cols=104 Identities=11% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
+.+|... +.-++|..+|.|||+|||||++++++ +..+||-+ .|. |+.=+ ++++|.....+
T Consensus 43 ~~L~~a~-~~~v~tRFAPsPtGyLHIGharaAll-N~l~Ar~~--gG~---~iLRi-------------EDTDp~R~~~e 102 (601)
T PTZ00402 43 LQLTNAE-EGKVVTRFPPEASGFLHIGHAKAALI-NSMLADKY--KGK---LVFRF-------------DDTNPSKEKEH 102 (601)
T ss_pred ccCCCCC-CCeeEEeeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------cCCCCcccCHH
Confidence 4455432 23489999999999999999998887 99999853 332 33333 45788888899
Q ss_pred HHHHHHHHHhhccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 353 YFAIHREVYEWFEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
|.+.|.++++|||+.+|. .+++++ |.+..+++..+|+++|++|.
T Consensus 103 ~~d~IleDL~WLGl~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY~ 147 (601)
T PTZ00402 103 FEQAILDDLATLGVSWDVGPTYSSD--YMDLMYEKAEELIKKGLAYC 147 (601)
T ss_pred HHHHHHHHHHHCCCCCCCceeeccc--cHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999985 445554 99999999999999999994
No 111
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.46 E-value=6e-13 Score=164.05 Aligned_cols=272 Identities=11% Similarity=0.075 Sum_probs=162.5
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||-+ .| .|+.-+ ++++|.....+|.+.|.++++|
T Consensus 32 v~tRFaPsPtG~lHiGhar~all-n~~~A~~~--~G---~~~LR~-------------eDTd~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILL-NFGIARDY--GG---RCHLRM-------------DDTNPETEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHH-HHHHHHHh--CC---EEEEEe-------------CCCCCCcCChHHHHHHHHHHHH
Confidence 88999999999999999998887 88888743 23 333334 4578888888999999999999
Q ss_pred cccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 364 FEIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 364 lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
||+.+|.- +++++ |.+..+++..+|+++|++|.. +|... ++.... +.....|.-|
T Consensus 93 LG~~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c-----~cs~e-------ei~~~r---~~~~~~g~~~------- 148 (771)
T PRK14703 93 LGFDWGEHLYYASD--YFERMYAYAEQLIKMGLAYVD-----SVSEE-------EIRELR---GTVTEPGTPS------- 148 (771)
T ss_pred cCCCCCCCceEeec--CHHHHHHHHHHHHHcCCcccC-----cCCHH-------HHHHHH---hhhhhcCCCC-------
Confidence 99999853 45664 999999999999999999974 23331 111000 0000011111
Q ss_pred ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCch---HHHHH-HHHhhcCCCcEeeeccCC---
Q psy7266 443 NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSN---ARVIC-KAWLKDGLKPRCITRDLK--- 515 (1175)
Q Consensus 443 ~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~wl~~~l~dw~ISR~~~--- 515 (1175)
.| |. .+++ + ++..|. ....+ .|... .|..+ ...-...++||.|=|...
T Consensus 149 --------~~-R~-~s~e----e----~l~~~~-----~m~~G--~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H 203 (771)
T PRK14703 149 --------PY-RD-RSVE----E----NLDLFR-----RMRAG--EFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHH 203 (771)
T ss_pred --------CC-CC-CCHH----H----HHHHHH-----HHhCC--CCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCC
Confidence 11 10 0000 0 000011 11111 12110 11100 000113578999988642
Q ss_pred --CCcc---cCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEE
Q psy7266 516 --WGIP---VPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIM 586 (1175)
Q Consensus 516 --WG~p---iP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~ 586 (1175)
.|.. .|.++ +.....+....+.|++ |.|+. +.|..+ +.+++ .+.+.-.++
T Consensus 204 ~~~Gd~~~i~PtYd----------------fa~~vdD~l~gITHvlRg~E~~~~~~~~~~l----~~~l~-~~~~~P~~~ 262 (771)
T PRK14703 204 YRTGDEWCIYPMYD----------------FAHPLEDAIEGVTHSICTLEFENNRAIYDWV----LDHLG-PWPPRPRQY 262 (771)
T ss_pred CCcCCCCCcCCCcc----------------ccceeeccccCCcEEEecHhhhhccHHHHHH----HHHhC-CCCCCccee
Confidence 2222 22221 1111011222334555 77665 344333 33333 133224666
Q ss_pred eeceeecCCCcccccC-------CCcc--------CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 587 ATEYLNYEDGKFSKSR-------GTGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 587 ~~g~l~~~G~KMSKS~-------GN~v--------~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
..|++++.|.|||||+ |-+- +...+.++||.++++|-|++..+....|..++|+.|..
T Consensus 263 ~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~ 335 (771)
T PRK14703 263 EFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEF 335 (771)
T ss_pred EEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHH
Confidence 7889999999999998 4331 45667888999999999999998888899999998875
No 112
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.45 E-value=4.3e-13 Score=143.40 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=70.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||-+ .|. |+.-+ +++++.....++.+.|.++++|
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~-n~l~Ar~~--~G~---~iLRi-------------eDtD~~R~~~~~~~~I~~dL~w 62 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALF-NFAFARKY--GGK---FILRI-------------EDTDPERSRPEYVESILEDLKW 62 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHH-HHHHHHHc--CCe---EEEEe-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 46778899999999999998887 88888853 333 33333 3466667778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcC
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAG 394 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G 394 (1175)
||+.+|- .++.+ ++.+..++.+.+|.++|
T Consensus 63 lGl~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 63 LGLDWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred cCCCCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 9999996 33444 37888888999999998
No 113
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.45 E-value=6.7e-14 Score=106.01 Aligned_cols=45 Identities=47% Similarity=0.678 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGD 1151 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~ 1151 (1175)
|.++|++|||+||+||+++ ++|++|+++|++||+||++|+++||.
T Consensus 1 l~~~I~~QGekVR~LKa~k-a~k~~i~~eV~~LL~LK~~~k~~tG~ 45 (45)
T cd00939 1 LEKEVAEQGNKVRKLKASK-ADKSVWQPEVNKLLDLKKQLALAEGK 45 (45)
T ss_pred ChHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999998 89999999999999999999999993
No 114
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.44 E-value=8.9e-13 Score=140.83 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=76.5
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||-+ .|. |+.-+ +++++.....++.+.|.++++|
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~-~~l~Ar~~--~G~---~iLRi-------------eDtD~~R~~~~~~~~I~~dL~w 62 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILL-NFGYAKKY--GGR---CNLRF-------------DDTNPEKEEEEYVDSIKEDVKW 62 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEe-------------cCCCCcccchHHHHHHHHHHHH
Confidence 57788899999999999998887 88888753 333 33333 4567777788899999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
||+.+|-..+.+ ++.+..++...+|.++|++|.
T Consensus 63 lGl~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 63 LGIKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred cCCCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 999999544444 488999999999999999997
No 115
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.43 E-value=1.8e-12 Score=136.80 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-cCCC---CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy7266 637 FSWQDLATKNNSELLNNLGNFINRALSFIEKN-YGST---IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI 712 (1175)
Q Consensus 637 f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~-~~~~---~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i 712 (1175)
||++.+... .+.+++++||.+..++..+... ++.. ++...+...|+|+++++++++..+.++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 677777543 3447778888664443321111 1111 1222357899999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 713 LNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 713 ~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
+.|. ..+++|++..|+..+..+ . +. +......++..++..++++|+|||||+||+||++|+.
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~-~-~~-~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEE-G-DD-DKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCC-C-ch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 9995 556999999887543222 1 11 2234566778999999999999999999999999974
No 116
>PLN02627 glutamyl-tRNA synthetase
Probab=99.43 E-value=7.8e-13 Score=156.04 Aligned_cols=278 Identities=16% Similarity=0.216 Sum_probs=160.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||- ..|.=++ -+ +++++.....++.+.|.++|+|
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~-n~l~Ar~--~gG~fiL---RI-------------EDTD~~R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALF-NYLFARS--KGGKFVL---RI-------------EDTDLARSTKESEEAVLRDLKW 106 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHHH--hCCEEEE---Ee-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 88899999999999999999887 9999984 3344333 33 4466677788999999999999
Q ss_pred cccccccc---------CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-cee--cccCCCccccCCC
Q psy7266 364 FEIDFDYF---------GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RFV--EGVCPKCRYEDAR 431 (1175)
Q Consensus 364 lgi~~D~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~V--~g~cP~c~~~d~~ 431 (1175)
|||.+|-- ++.+ ++.+.-+++..+|.++|++|.. ||...+ |.. +.. ...||. .|+
T Consensus 107 LGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~C-----fCs~ee--l~~~r~~~~~~~~~~-~Yd--- 173 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYPC-----FCTDEE--LEAMKEEAELKKLPP-RYT--- 173 (535)
T ss_pred cCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeeec-----cCChHH--HHHHHHHHHhcCCCc-CCC---
Confidence 99999953 2233 4778889999999999999964 444421 110 000 001110 110
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
| .|..+. ..+. ......|.+..+| |+++.-. ...|.+..+..+. +-...+.|+.|-
T Consensus 174 ~----~cr~l~-~ee~--~~~~~~g~~~~iR------~k~p~~~----------~~~~~D~i~G~i~-~~~~~~~D~Vi~ 229 (535)
T PLN02627 174 G----KWATAS-DEEV--QAELAKGTPYTYR------FRVPKEG----------SVKIDDLIRGEVS-WNTDTLGDFVLL 229 (535)
T ss_pred C----ccccCC-HHHH--HHHHhCCCCceEE------EEcCCCC----------ceEEEeeeeeeee-eccccCCCeEEE
Confidence 0 121110 0000 0000112222322 1211000 0001111111100 001356788888
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEEe
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIMA 587 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~~ 587 (1175)
|.-. .|.+++-.-| | +.+..+.|++ |.|++ +-|..++-+ + ++.+|. +.+
T Consensus 230 R~DG----~PtY~fA~vV--------------D--D~~mgITHViRG~D~l~nTpkQi~ly~a----L--g~~~P~-f~H 282 (535)
T PLN02627 230 RSNG----QPVYNFCVAV--------------D--DATMGITHVIRAEEHLPNTLRQALIYKA----L--GFPMPR-FAH 282 (535)
T ss_pred ecCC----Ccccccccee--------------c--ccccCCcEEEechhhhcChHHHHHHHHH----c--CCCCCe-EEE
Confidence 8643 3444311111 1 2444556777 88877 345444433 3 467774 445
Q ss_pred ecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCC--CCCCccccHHHHHHH
Q psy7266 588 TEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP--ENQDTSFSWQDLATK 645 (1175)
Q Consensus 588 ~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~--~~~D~~f~~~~~~~~ 645 (1175)
+.++ +.+|+||||+.| .+...++.+.||.+++++-||+..+. ...+--|+.+++.+.
T Consensus 283 lpli~~~~g~KLSKR~~-~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 283 VSLILAPDRSKLSKRHG-ATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEK 342 (535)
T ss_pred ccceeCCCCCccccccC-CccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHHh
Confidence 5555 678899999987 46888899999999999999987653 223346787776543
No 117
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.41 E-value=9.1e-14 Score=105.29 Aligned_cols=45 Identities=56% Similarity=0.796 Sum_probs=43.1
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhcc
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 1080 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~ 1080 (1175)
|+++|++||++||+||+++|++++||++|++||+||++|+++||.
T Consensus 1 l~~~I~~QGekVR~LKa~ka~k~~i~~eV~~LL~LK~~~k~~tG~ 45 (45)
T cd00939 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAEGK 45 (45)
T ss_pred ChHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999999999999984
No 118
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=99.41 E-value=9.5e-14 Score=112.88 Aligned_cols=51 Identities=35% Similarity=0.523 Sum_probs=46.9
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCC
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~ 1086 (1175)
|+++|++||+.||+||++++++++|+++|++||+||++|+++||++|+|+.
T Consensus 1 L~~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~LK~~~~~~tg~~~~~~~ 51 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEKADKEEIDAAVAKLLELKAELKELTGKDYKPGK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSSSTTSSS
T ss_pred ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 678999999999999999999999999999999999999999999998865
No 119
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.40 E-value=9.1e-13 Score=134.86 Aligned_cols=90 Identities=24% Similarity=0.438 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy7266 682 DFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLL 759 (1175)
Q Consensus 682 d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~l 759 (1175)
|+|++++++.+++.+.++|++|+|+.|+..++.| .++||+|++..+||.+.+++... .. ++.++.++++.+++|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~---~~-~~~~l~~~l~~~~~l 76 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES---RE-AQYTLYEILKILLIL 76 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH---HH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH---HH-HHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999998 57889999999999876543222 23 678889999999999
Q ss_pred ccchhhHHHHHHHHHc
Q psy7266 760 LSPYMPSTASTIASQL 775 (1175)
Q Consensus 760 L~PfmP~~se~i~~~L 775 (1175)
|+|||||+||+||++|
T Consensus 77 l~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 77 LSPFMPFIAEEIWQRL 92 (153)
T ss_dssp HTTTSHHHHHHHHHHC
T ss_pred cCCCCcHHHHHHHHHh
Confidence 9999999999999888
No 120
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.39 E-value=4e-12 Score=151.64 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=147.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|...|.|||+|||||++++.+ +..+||-. .|. |+.-+ +++++......+.+.|.++|+|
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~-n~l~Ar~~--~G~---fiLRi-------------eDtD~~R~~~~~~~~i~~~L~w 65 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALF-NWLFARHH--GGK---FILRI-------------EDTDQERSTEEAEEAILEGLKW 65 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHH-HHHHHHHc--CCE---EEEEe-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 67888999999999999999887 88888853 333 33333 4466777888999999999999
Q ss_pred cccccccc--------CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-c---eecccCCCccccCCC
Q psy7266 364 FEIDFDYF--------GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-R---FVEGVCPKCRYEDAR 431 (1175)
Q Consensus 364 lgi~~D~~--------~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~---~V~g~cP~c~~~d~~ 431 (1175)
||+.+|-- ++.+ ++.+..+++..+|.++|++|.. ||...+ |.. + .-.|..|. | .
T Consensus 66 lGl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~C-----~cs~ee--l~~~r~~~~~~~~~~~--y---~ 131 (476)
T PRK01406 66 LGLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYYC-----YCTPEE--LEAMREEQRAAGEPPR--Y---D 131 (476)
T ss_pred CCCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeeec-----CCCHHH--HHHHHHHHHhCCCCCC--C---C
Confidence 99999954 3344 4778899999999999999964 344321 110 0 00111110 0 0
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
| .|..+.. .+.. .-...|.+.++| |+++.- ....|.+..+..+. +-...+.|+.|-
T Consensus 132 ~----~cr~~~~-~~~~--~~~~~g~~~~iR------~k~p~~----------~~~~~~D~i~G~~~-~~~~~~~D~Vl~ 187 (476)
T PRK01406 132 G----RCRDLTK-EEVA--ARLAAGEPPVIR------FKVPDE----------GEVVFDDLVRGEIE-FPNSELDDFVIL 187 (476)
T ss_pred c----cccCCCH-HHHH--HHHhCCCCeeEE------EEcCCC----------CceEEEEeccceEE-eccccCCCcEEE
Confidence 0 1211100 0000 000112233333 222110 00012222221110 001346788888
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEE-eeccccchhHhHHHHHHHHhCCCcccCeEEEeece
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQF-MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEY 590 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~-~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~ 590 (1175)
|.-. .|.+....-| | +....+-|+ .|.|++.. +-....++.++| +..|...+..-+
T Consensus 188 RsDG----~ptY~~a~vV--------------d--D~~~~ithvIrG~d~~~~-t~~q~~l~~alG--~~~p~~~H~pli 244 (476)
T PRK01406 188 RSDG----TPTYNFAVVV--------------D--DHLMGITHVIRGEDHLSN-TPKQILLYEALG--WEVPVFAHLPLI 244 (476)
T ss_pred ecCC----CccccchHHH--------------H--HHHcCCCEEEECchhhcC-HHHHHHHHHHhC--CCCCeEEEeeee
Confidence 8532 3433211100 0 011111233 58887642 222223445555 555644333334
Q ss_pred eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhc
Q psy7266 591 LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYV 628 (1175)
Q Consensus 591 l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~ 628 (1175)
++.+|.||||+.| .++..++++.||-+.+++-|++..
T Consensus 245 ~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~l 281 (476)
T PRK01406 245 LGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALL 281 (476)
T ss_pred eCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHh
Confidence 5889999999999 889999999998888888887754
No 121
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.38 E-value=2.6e-12 Score=151.81 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=76.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||-+ .|. |+.-+ ++++|.....+|.+.|.++++|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~-n~~~A~~~--~G~---~iLRi-------------eDTd~~r~~~e~~~~I~~dL~w 61 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICL-NFGYAKYY--NGT---CNLRF-------------DDTNPVKEDPEYVESIKRDVEW 61 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------cCCCcccCChHHHHHHHHHHHH
Confidence 36778899999999999999887 99999843 333 33334 4477777888999999999999
Q ss_pred cccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|.- ++++ .|.+...+...+|+++|++|..
T Consensus 62 LG~~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 62 LGFKWEGKIRYSS--DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred cCCCCCCCceEcc--ccHHHHHHHHHHHHHcCCEEee
Confidence 99999643 3454 4888888999999999999974
No 122
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.37 E-value=2.5e-12 Score=151.69 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=78.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||.+ .| .|+.-+ ++++|.....+|.+.|.++++|
T Consensus 52 v~tRFaPsPtG~LHiGharaall-n~~~Ar~~--gG---~~iLRi-------------EDTDp~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNL-NFGSARAH--GG---KCYLRY-------------DDTNPETEEQVYIDAIMEMVKW 112 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHH-HHHHHHHh--CC---EEEEEE-------------CCCCccccChHHHHHHHHHHHH
Confidence 68999999999999999998887 99999863 23 233333 4577888888999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|....++ .|.+...+...+|+++|++|..
T Consensus 113 LGi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 113 MGWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred cCCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEEc
Confidence 999999765554 5888888999999999999974
No 123
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=99.36 E-value=8.3e-13 Score=107.43 Aligned_cols=51 Identities=45% Similarity=0.558 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNN 1157 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~ 1157 (1175)
|.++|++||+.||+||+++ +++++|+++|++||+||++|+++||.+|.++.
T Consensus 1 L~~~I~~QG~~VR~LKa~k-a~k~~i~~aV~~Ll~LK~~~~~~tg~~~~~~~ 51 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEK-ADKEEIDAAVAKLLELKAELKELTGKDYKPGK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHCSSSTTSSS
T ss_pred ChHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 6789999999999999998 89999999999999999999999999998864
No 124
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.35 E-value=3.9e-12 Score=150.04 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=156.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++.+ +..+||- ..|.=++. + +++++.....++.+.|.++|+|
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~-n~l~Ar~--~gG~fiLR---I-------------EDTD~~R~~~~~~~~i~~~L~W 65 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALF-NYLFARH--HNGKFLLR---I-------------EDTDKERSTKEAVEAIFSGLKW 65 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHH-HHHHHHH--cCCEEEEE---E-------------CCCCccccChHHHHHHHHHHHH
Confidence 57788899999999999999887 9998883 34443333 3 3345566778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-ceecccCCCccccCCCCCcccccCCc
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RFVEGVCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~V~g~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
||+++|- .++.++ +.+.-+++..+|.++|.+|.. ||...+ |.. +.. .+.|+....+-..| ..+
T Consensus 66 LGl~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~C-----fCt~ee--l~~~r~~---~~~~~~~~~Y~~~c---r~~ 130 (513)
T PRK14895 66 LGLDWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYC-----FTRQEE--IERQRQQ---ALENKQHFIFNSEW---RDK 130 (513)
T ss_pred cCCCCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEe-----cCcHHH--HHHHHHh---hhccCCCCCCChhh---ccc
Confidence 9999993 334443 678888999999999999964 444421 111 000 01111100011111 111
Q ss_pred cccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccC
Q psy7266 442 INAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521 (1175)
Q Consensus 442 ~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP 521 (1175)
... + . ..+.+.++| |+++.- ....|.+..+..+. +-...+.|+.|-|.- |+ |
T Consensus 131 ~~~-~-----~-~~~~~~~iR------~k~p~~----------~~~~~~D~v~G~~~-~~~~~~~D~Vi~RsD--G~--p 182 (513)
T PRK14895 131 DPS-I-----Y-PTDIKPVIR------LKTPRE----------GSITIHDTLQGEVV-IENSHIDDMVLLRAD--GT--A 182 (513)
T ss_pred Chh-h-----h-hcCCCeeEE------EEcCCC----------CceEEEeeccccee-cccccCCCcEEEEeC--CC--c
Confidence 000 0 0 012223333 222210 00012222221110 111346788887763 22 4
Q ss_pred CCCCCCceEEecCccccccCCCCCCCCcceEEEE-eeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCccc
Q psy7266 522 LPGFENKYSLSSSPSLVQFLPTATPQSKITLYQF-MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFS 599 (1175)
Q Consensus 522 ~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~-~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMS 599 (1175)
.+....-| |+ .+..+-|+ .|.|++.. +.....++.++| +..| .+.++.+|. .+|+|||
T Consensus 183 tY~~a~vV--------------DD--~~m~ithVIRG~d~~~~-t~~q~~l~~aLG--~~~p-~~~H~plv~~~~g~KLS 242 (513)
T PRK14895 183 TYMLAVVV--------------DD--HDMGITHIIRGDDHLTN-AARQLAIYQAFG--YAVP-SMTHIPLIHGADGAKLS 242 (513)
T ss_pred chhhHHHH--------------HH--HhcCCCEEEECchHhhh-HHHHHHHHHHcC--CCCC-eEEEEEeEEcCCCCccc
Confidence 33211000 00 11112233 48887642 222223455555 5555 556667774 9999999
Q ss_pred ccCCCccCchhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHHH
Q psy7266 600 KSRGTGVFGNNAKDTGLPADIFRFYLLYVRP-ENQDTSFSWQDLAT 644 (1175)
Q Consensus 600 KS~GN~v~~~d~i~~~~gaDalR~~ll~~~~-~~~D~~f~~~~~~~ 644 (1175)
|+.|. +...++.+.||-+++++-||+..+. .+.+-.|+.+++.+
T Consensus 243 KR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 243 KRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred cccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 99996 4778888899999999999996543 22334678777654
No 125
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.24 E-value=2e-10 Score=124.10 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..++|- ..| .|+.-+|| +++.....++.+.|.++++|
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~-n~l~ar~--~~G---~~ilRieD-------------td~~r~~~~~~~~i~~dL~w 62 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALF-NYLFARK--HGG---KFILRIED-------------TDQERSVPEAEEAILEALKW 62 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHH-HHHHHHH--cCC---eEEEEECc-------------CCCCCCchHHHHHHHHHHHH
Confidence 46778899999999999998887 8888773 223 45555555 45555667888999999999
Q ss_pred ccccccc---------cCCCCCHHHHHHHHHHHHHHHHcC
Q psy7266 364 FEIDFDY---------FGRTSTPQQTEIVQHLFDRVHKAG 394 (1175)
Q Consensus 364 lgi~~D~---------~~~T~~~~~~~~v~~~f~~L~~~G 394 (1175)
|||.+|. .++.+ .+.+..+++..+|.++|
T Consensus 63 lGl~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 63 LGLDWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred cCCCCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 9999997 33444 37777778888888877
No 126
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.23 E-value=2.8e-11 Score=133.16 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=74.7
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhc
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWF 364 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 364 (1175)
++...|.|||+|||||++++++ +..+||- ..|.=++. + +++++.....++.+.|.++++||
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL~-n~l~Ar~--~gG~~iLR---i-------------EDtD~~R~~~~~~~~I~~dL~wL 62 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAALG-SYLDARA--HGGRWLVR---I-------------EDLDPPREVPGAADDILRTLEAY 62 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHHH-HHHHHHH--hCCEEEEE---e-------------CcCCCCCCChHHHHHHHHHHHHc
Confidence 5667889999999999999887 9999984 34443333 3 34666667788999999999999
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 365 EIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 365 gi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||.+|-- ++.+ ++.+.-+++..+|.++|++|..
T Consensus 63 Gl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 63 GLHWDGEVVYQS--QRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred CCCCCCCeeeee--CCHHHHHHHHHHHHHcCCEEec
Confidence 9999953 3444 4888999999999999999964
No 127
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.19 E-value=2.1e-11 Score=92.44 Aligned_cols=41 Identities=46% Similarity=0.601 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhh
Q psy7266 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLS 1146 (1175)
Q Consensus 1105 ~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~ 1146 (1175)
.|.++|.+||++||+||+++ |+|++|+++|++||+||++|.
T Consensus 2 ~l~~~I~~QGe~VRkLKa~K-A~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEK-ASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred cHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999998 899999999999999999994
No 128
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.18 E-value=2.5e-11 Score=135.06 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=75.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||-. .| .|+.=+| ++++.....++.+.|.++|+|
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~-n~l~Ar~~--~G---~~iLRiE-------------DtD~~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALG-SWLDARAH--GG---RWLLRIE-------------DIDPPREVPGAADAILADLEW 66 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHH-HHHHHHHc--CC---EEEEEEC-------------cCCCCccchHHHHHHHHHHHH
Confidence 78899999999999999998887 88888743 23 3333343 456666778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||.+|- .++.+ ++.+..+++..+|.++|++|..
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCceec
Confidence 9999994 33444 3888999999999999999964
No 129
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.16 E-value=1.2e-11 Score=93.67 Aligned_cols=40 Identities=48% Similarity=0.611 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHH
Q psy7266 1035 ELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 1074 (1175)
Q Consensus 1035 ~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~ 1074 (1175)
.|+++|++||++||+||++||+|++|+++|++||+||++|
T Consensus 2 ~l~~~I~~QGe~VRkLKa~KA~k~~i~~eV~~LL~LKaql 41 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQL 41 (45)
T ss_pred cHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999998
No 130
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.15 E-value=3.8e-10 Score=109.42 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPEI---SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~~---~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
.+++|.++|+.+++.+++.+..|.. .....|+|+++.++.+++.+.++|++|+|+.|+..+++|.+..|+|++..+|
T Consensus 8 ~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~~p 87 (117)
T cd07375 8 RAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDELKP 87 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHhhH
Confidence 4688999999999877665544421 2356789999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchh
Q psy7266 729 WVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYM 764 (1175)
Q Consensus 729 w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~Pfm 764 (1175)
|.+.+. +...++.++.++++.++++|+|||
T Consensus 88 w~~~~~------~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 88 ALQTEE------LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHcCch------hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 987541 233456677899999999999997
No 131
>KOG1422|consensus
Probab=99.14 E-value=2.4e-10 Score=116.22 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=121.7
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc-----CCC----hHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS-----KFD----TKNE 73 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~-----p~~----~~~~ 73 (1175)
.||+++++.|.|.+.|++|.+..||+.... +.|.+++|+| ..||..++||..|-++|. |.. +.|.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l-~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~ 98 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVL-KFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPES 98 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeE-EeCCceeccHHHHHHHHHHhcCCCCCcccCCHHH
Confidence 589999999999999999999999998743 6799999999 588899999999999996 211 1222
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcCC-----CCchHHHHHHHHHHHHHhc----CCcccCCCCCccchhHHHHHHHHh---
Q psy7266 74 SAINQWLEWESVELFPSVLSFFDNP-----KVLPDNLKTKLNVLNEAIS----NSFLIENSTTVADICIWTCVYPLL--- 141 (1175)
Q Consensus 74 a~v~~wl~~~~~~l~p~~~~~~~~g-----~~~~~~l~~~L~~Le~~L~----~~fLvG~~lTlADi~l~~~L~~~~--- 141 (1175)
+. +...++..+..++... ......+...|..||++|. ++||.|+++|+||+.+.+-|+.+.
T Consensus 99 as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~ 171 (221)
T KOG1422|consen 99 AS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAA 171 (221)
T ss_pred Hh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHH
Confidence 21 2234445555554311 1223567888899999998 789999999999999999998764
Q ss_pred hCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 142 ~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
...........+++|.||+..+.++.+|......
T Consensus 172 k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~ 205 (221)
T KOG1422|consen 172 KHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPA 205 (221)
T ss_pred HHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCch
Confidence 2222234667899999999999998888765443
No 132
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.13 E-value=1e-10 Score=132.88 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=68.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|+|...|.|||+|||||++++++ +..+||- ..|. |+.-+ +++++.....++.+.|.++|+|
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~-n~~~Ar~--~~G~---~iLRi-------------eDtD~~R~~~~~~~~i~~~L~w 62 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALL-NYLFARK--YGGK---FILRI-------------EDTDPERCRPEFYDAILEDLRW 62 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHH-HHHHHHH--TTSE---EEEEE-------------ETSSTTTCHHHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHH-HHHHHhc--cCce---EEEec-------------cccccccchhhHHHHHHhheeE
Confidence 57788899999999999999887 8888883 3343 33333 4466777778999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|. .++.+ .+.+..+.+.++|+++|++|..
T Consensus 63 lGl~~D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 63 LGLEWDYGPYYQS--DRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HT---STCEEEGG--GGHHHHHHHHHHHHHTTSEEEE
T ss_pred EEEecCCeEEeHH--HHHHHHHHHHHHHhhcCCCccc
Confidence 9999993 33344 5889999999999999999974
No 133
>KOG4426|consensus
Probab=99.12 E-value=1.4e-08 Score=112.41 Aligned_cols=333 Identities=17% Similarity=0.194 Sum_probs=202.1
Q ss_pred CCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH----H---------
Q psy7266 275 LPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL----E--------- 341 (1175)
Q Consensus 275 ~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~----~--------- 341 (1175)
+|.-..++++|....||.-..+|+||+|+.+| +|.++|.....|++|+.+-..-++|+..-...+ +
T Consensus 182 ~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTII-Gdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp 260 (656)
T KOG4426|consen 182 LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTII-GDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSP 260 (656)
T ss_pred CcccceeeEEEecCCCcHHHHhhhhhhhhhhH-hHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCC
Confidence 45556789999999999999999999998877 999999999999999999888888775432211 0
Q ss_pred ---------------------------------cCCCc------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHH
Q psy7266 342 ---------------------------------EGLTP------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEI 382 (1175)
Q Consensus 342 ---------------------------------~g~~p------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~ 382 (1175)
+|-+| ..+|+--...+...+++|.|+....+. ..|...
T Consensus 261 ~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GE---SFYq~~ 337 (656)
T KOG4426|consen 261 PIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGE---SFYQDR 337 (656)
T ss_pred CchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcch---hhhhhH
Confidence 11122 235666667888889999998865433 358888
Q ss_pred HHHHHHHHHHcCCEEeceEE-EeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEE
Q psy7266 383 VQHLFDRVHKAGFTSSASVE-QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~-~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~ 461 (1175)
+.++.+.|..+|++..++.- +.|-+. |+-|+.+
T Consensus 338 m~~vveel~~kglvee~~Gr~i~f~~g----------------------------------------------~~IPLtv 371 (656)
T KOG4426|consen 338 MAEVVEELKSKGLVEEDDGRRIMFPEG----------------------------------------------CDIPLTV 371 (656)
T ss_pred HHHHHHHHhcCCceeecCCceEeccCC----------------------------------------------CCcceEE
Confidence 89999999999999876532 222222 2333333
Q ss_pred eeccccc-ccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCcccccc
Q psy7266 462 KSSTQLF-LELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQF 540 (1175)
Q Consensus 462 ~~~~qwf-l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~ 540 (1175)
..++-=| .+.+++.. +...|.+..-||.|
T Consensus 372 VKSDGGftYdtsDlaA--------------------l~yRl~EEkadwiI------------------------------ 401 (656)
T KOG4426|consen 372 VKSDGGFTYDTSDLAA--------------------LKYRLNEEKADWII------------------------------ 401 (656)
T ss_pred EecCCCcccccchHHH--------------------HHHHHHHhhcCeEE------------------------------
Confidence 3322111 22222211 11112244456643
Q ss_pred CCCCCCCCcceEEEEeeccc-cchhHhHHHHHHHHhCC-CcccCe-EEEeeceee-cCCCcccccCCCccCchhhhhc--
Q psy7266 541 LPTATPQSKITLYQFMAKDN-VPFHSIMFPATLVAAGD-QYTKVN-HIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT-- 614 (1175)
Q Consensus 541 wp~~~~~~~v~~~~~~GkD~-i~fh~~~~pa~l~~~~~-~~~~p~-~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~-- 614 (1175)
+++...+ ..|.++|- |.-+ .|. +...|+ ..+..|.|+ .+|+||-++.|.+|-..|+++.
T Consensus 402 -------------YVvD~GQs~Hf~t~fk-Aar~-~gwld~~~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~ 466 (656)
T KOG4426|consen 402 -------------YVVDSGQSQHFNTIFK-AARK-AGWLDPTYPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGK 466 (656)
T ss_pred -------------EEeeCchhHHHHHHHH-HHHH-cCccCCCccceeeeeeeeEEccCcccccccccceeeHHHHHHHHH
Confidence 2222222 22333332 2111 121 111221 223344454 5667788888888777666651
Q ss_pred ----------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Q psy7266 615 ----------------------------GLPADIFRFYLLYVRPENQDTSFSWQDLAT-KNNSELLNNLGNFINRALSFI 665 (1175)
Q Consensus 615 ----------------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~-~~n~~l~~~l~n~~~r~~~~~ 665 (1175)
+|| .+.|.-+++.. -+|.-||.+.+.+ +-|. +-.+-....|+.+++
T Consensus 467 kRs~~~Liergrdk~~tpeeL~~a~eavayG--ciKYaDL~hnR-~~dY~FSFDkML~DrGnT--AvYLLYa~tRIcSI~ 541 (656)
T KOG4426|consen 467 KRSKEKLIERGRDKVLTPEELDAAQEAVAYG--CIKYADLSHNR-ITDYIFSFDKMLEDRGNT--AVYLLYAYTRICSIA 541 (656)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHhc--chhHhhhcccc-ccceeeeHHHHhhccCcc--eehhHHHHHHHHHHH
Confidence 233 36776666443 3688999988753 2221 112333345777777
Q ss_pred HHhcCCC---------CCCCCCChhhHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 666 EKNYGST---------IPEISPIHEDFL-LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 666 ~~~~~~~---------~p~~~~~~~d~~-l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
.+..... .+...+...+.| +-..+-++.+.+.++++++=++..+.++++++..+..|++.+-
T Consensus 542 rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cy 613 (656)
T KOG4426|consen 542 RKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCY 613 (656)
T ss_pred HHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccE
Confidence 6542221 112223333444 4456777888888999999999999999999988888888764
No 134
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.12 E-value=2e-10 Score=111.41 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhcCC---C----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFDNP---K----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g---~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
.++..++.+++|+.|.+..+.+.+....+.. . ...+.+.+.|..||++|+ ++|++|+++|+|||++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 3678899999999999999999888765521 1 223478999999999999 9999999999999999998876
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
+............||+|.+|+++|.++|+++++
T Consensus 82 ~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 82 FAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 532211122358899999999999999999875
No 135
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.11 E-value=2.1e-10 Score=101.87 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=58.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++..+ .+||.|+||+|+ ++|..|+||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV-DNGFVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE-ECCEEEEcHHHHHHHHh
Confidence 799999999999999999999999999999986442 278999999996 67899999999999985
No 136
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.11 E-value=1.9e-10 Score=101.74 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=58.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.|+++++++++|+++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~-~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI-HGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999999887432 278999999996 78999999999999984
No 137
>KOG3029|consensus
Probab=99.10 E-value=5.4e-10 Score=117.17 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=111.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-cc--cCCCCcccEEEeCCCcEEeCHHHHHHHHc-----------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-AR--LLLSKTVPVLELDDGSQLFSANQSCLYLS----------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~~--~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----------- 66 (1175)
+.||.+..||+|.+||..|.+.|++|+++.|++.. .+ -+-..+||+|. .+|+.+.||.+|+.-|+
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~-~~Geqm~dSsvIIs~laTyLq~~~q~l~ 169 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILL-IRGEQMVDSSVIISLLATYLQDKRQDLG 169 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEE-eccceechhHHHHHHHHHHhccCCCCHH
Confidence 47999999999999999999999999999999865 22 34678999995 66888999999988762
Q ss_pred ------CC-------------------------Ch----HHHHHHHHHHHHHhhhchhhhhhhhc---------------
Q psy7266 67 ------KF-------------------------DT----KNESAINQWLEWESVELFPSVLSFFD--------------- 96 (1175)
Q Consensus 67 ------p~-------------------------~~----~~~a~v~~wl~~~~~~l~p~~~~~~~--------------- 96 (1175)
|. ++ ..+...+.|-.|.+..|.-.+...++
T Consensus 170 eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~q 249 (370)
T KOG3029|consen 170 EIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFSQ 249 (370)
T ss_pred HHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHHH
Confidence 10 10 11223456666665554332222211
Q ss_pred CCC-----------------------------------CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHH
Q psy7266 97 NPK-----------------------------------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 97 ~g~-----------------------------------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
.|+ ..++.+..+++..-..|+ ++|+.|.++++||++++++|+.
T Consensus 250 ~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~s 329 (370)
T KOG3029|consen 250 AGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRS 329 (370)
T ss_pred cCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhH
Confidence 111 123344555555555665 8999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhc
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
+..-... ...-...++..||-+|.+
T Consensus 330 m~gc~af-kd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 330 MEGCQAF-KDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhhHH-HHHHhcchHHHHHHHHHH
Confidence 6422111 122345778899988865
No 138
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.10 E-value=1.9e-10 Score=101.34 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=58.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++|++|.++|++|+.+.++.... ..+|.++||+|+.+||..|+||.+|++||.
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 799999999999999999999999999988876532 267899999998667999999999999985
No 139
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.10 E-value=3e-10 Score=100.06 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+.+||..|+||.+|++|+.
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~~ 71 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWAL 71 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhhC
Confidence 379999999999999999999999999999987642 378999999998777999999999999973
No 140
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.09 E-value=2.9e-10 Score=100.75 Aligned_cols=66 Identities=29% Similarity=0.342 Sum_probs=59.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.++... ..+||.+++|+|+.+||..|+||.||++||.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 79999999999999999999999999999888643 1268999999998788999999999999984
No 141
>cd00936 WEPRS_RNA WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.09 E-value=6.6e-11 Score=95.62 Aligned_cols=50 Identities=34% Similarity=0.452 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccC
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAAT 1085 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~ 1085 (1175)
|+++|+.||+.||.||++++++.+|+.+|+.|++||++||++||+||+|+
T Consensus 1 ~~~~i~~qge~VR~LK~~~a~k~~~~~av~~Ll~lK~~~k~~tg~~~~~~ 50 (50)
T cd00936 1 LYKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKEATGQDYKPG 50 (50)
T ss_pred ChHHHHhchHHHhhhccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 46889999999999999999999999999999999999999999999873
No 142
>KOG1149|consensus
Probab=99.07 E-value=1.2e-08 Score=113.72 Aligned_cols=286 Identities=16% Similarity=0.220 Sum_probs=161.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|=+..-|.|+|.||+|-+|++.. +.++||- ..|.-++.+=-| +...++..-.+++.++++|
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALf-NYLfArk--~gGkFiLRiEDT----------------Dq~R~v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALF-NYLFARK--KGGKFILRIEDT----------------DQKRLIRGSEEAIYEDLKW 94 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHH-HHHHHHh--cCCeEEEEeccc----------------cccccccchHHHHHHHHHh
Confidence 44455677999999999999887 8888884 345544444333 3344555566778899999
Q ss_pred ccccccccCC-------CCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec--ccCCCccccCCCCCc
Q psy7266 364 FEIDFDYFGR-------TSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE--GVCPKCRYEDARGDQ 434 (1175)
Q Consensus 364 lgi~~D~~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~--g~cP~c~~~d~~G~~ 434 (1175)
+||.+|--.+ --..+..++-+...++|++.|.+|+. ||...+..+-..... +.-| .+-.-
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC-----FCs~~rL~~lrk~A~k~~~~p------~YD~k 163 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC-----FCSEERLDLLRKSALKKHEIP------RYDRK 163 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEe-----ccCHHHHHHHHHhhhccCCCC------cccch
Confidence 9999997431 11234667777888999999999985 555532222111110 0000 00000
Q ss_pred ccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCCcEee
Q psy7266 435 CDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLK----DGLKPRCI 510 (1175)
Q Consensus 435 c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~----~~l~dw~I 510 (1175)
|..+-+. +.. .-.--|.+..+| |++++- ++.....++-|+. .+..|-.|
T Consensus 164 ---ca~ls~~-ei~--~~lakg~pf~iR------Frl~~~---------------~~~f~DLvyG~v~~~~d~~~gD~Vv 216 (524)
T KOG1149|consen 164 ---CANLSDA-EIK--QKLAKGTPFTIR------FRLPKE---------------SPPFTDLVYGKVNHNVDSNEGDPVV 216 (524)
T ss_pred ---hcccCHH-HHH--HHHhcCCCeeEE------EecCCC---------------CCChhhhhhhhhhccccccCCCcEE
Confidence 1111100 000 000012233332 333221 1111122222221 12333333
Q ss_pred eccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCcccCeEEE
Q psy7266 511 TRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTKVNHIM 586 (1175)
Q Consensus 511 SR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~p~~i~ 586 (1175)
-+.- ..|.+++-+-| . +..+.|.|++ |.+.++ -|..++-|+ +|.+|+-+.
T Consensus 217 mKSD----gfPTYHfAnVV-------------D---Dh~M~IsHViRGeEWlpST~KH~lLYkAf------gW~pPkFaH 270 (524)
T KOG1149|consen 217 MKSD----GFPTYHFANVV-------------D---DHLMGISHVIRGEEWLPSTLKHILLYKAF------GWQPPKFAH 270 (524)
T ss_pred EecC----CCcceeeeeee-------------c---chhcchhheeecchhccccHHHHHHHHHh------CCCCCceee
Confidence 3321 22433321111 1 1334445655 666553 455554442 699998887
Q ss_pred eeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcC--CCCCCccccHHHHHHHhhHHHHHH
Q psy7266 587 ATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVR--PENQDTSFSWQDLATKNNSELLNN 653 (1175)
Q Consensus 587 ~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~--~~~~D~~f~~~~~~~~~n~~l~~~ 653 (1175)
..=.++.+|.|.||+.|. +...++.+.||=++++=-|++..+ ....+--|+.+++++.+|-+.++.
T Consensus 271 lpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ltk 338 (524)
T KOG1149|consen 271 LPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLTK 338 (524)
T ss_pred eeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhchhhhcc
Confidence 777788999999999985 678888888999999998888764 344556788999888777555443
No 143
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.06 E-value=4.6e-10 Score=99.42 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=59.3
Q ss_pred CEEEecCCCchHHHHHHHHHh--cCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEF--STTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~--~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++++++.+ +|++|+.+.++... ..+||.++||+|+.+||..|+||.||++||.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 799999999999999999999 89999998887643 1378999999998789999999999999984
No 144
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.4e-10 Score=108.55 Aligned_cols=164 Identities=17% Similarity=0.221 Sum_probs=115.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc----cCCCCcccEEEeCCCcEEeCHHHHHHHHcCC------Ch
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR----LLLSKTVPVLELDDGSQLFSANQSCLYLSKF------DT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~------~~ 70 (1175)
|+||-+..||+|.|+|+++-++|+|++.+.....+++ +-...+||+|+.+||..+.||..|++|+... ..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 8999999999999999999999999999888777654 2256689999999999999999999998622 12
Q ss_pred HHHHHHHHHHHHHhh----hchhhhhhhhc-------------------CCC---------CchHHHHHHHHHHHHHhc-
Q psy7266 71 KNESAINQWLEWESV----ELFPSVLSFFD-------------------NPK---------VLPDNLKTKLNVLNEAIS- 117 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~----~l~p~~~~~~~-------------------~g~---------~~~~~l~~~L~~Le~~L~- 117 (1175)
.-+-.+..|+.-... .+.|.+....+ .|. .-...+...|+.|+..+.
T Consensus 81 ~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~~ 160 (215)
T COG2999 81 KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIVG 160 (215)
T ss_pred CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhcC
Confidence 234457778774433 33444333221 111 112356777888888777
Q ss_pred CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 118 NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 118 ~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
.+=+- ..++.-||.+|+.|+.+..... ..+. ..+..|..+|.+...+
T Consensus 161 ~s~~n-~~l~~ddi~vFplLRnlt~v~g-i~wp---s~v~dy~~~msektqV 207 (215)
T COG2999 161 PSAVN-GELSEDDILVFPLLRNLTLVAG-IQWP---SRVADYRDNMSEKTQV 207 (215)
T ss_pred cchhc-cccchhhhhhhHHhccceeccc-CCCc---HHHHHHHHHHHHhhCc
Confidence 44233 4699999999999998654332 1111 4688999998875433
No 145
>cd00936 WEPRS_RNA WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.05 E-value=1.4e-10 Score=93.74 Aligned_cols=50 Identities=34% Similarity=0.409 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTN 1156 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~ 1156 (1175)
|.++|..||+.||.||.++ +++.+|+.+|+.|+.||++||++||+||+|+
T Consensus 1 ~~~~i~~qge~VR~LK~~~-a~k~~~~~av~~Ll~lK~~~k~~tg~~~~~~ 50 (50)
T cd00936 1 LYKKIAAQGDLVRELKAKK-APKEEIDAAVKKLLALKADYKEATGQDYKPG 50 (50)
T ss_pred ChHHHHhchHHHhhhcccc-CchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4678999999999999987 7999999999999999999999999999873
No 146
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.05 E-value=4e-10 Score=100.38 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=59.1
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+||+++.||++++++++++++|++|+.+.+++.. ..+||.|++|+|+.+||.+|+||.||++||.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 7999999999999999999999999999998752 2278999999998777999999999999995
No 147
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.02 E-value=8.4e-10 Score=97.75 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=57.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.++... ..+||.|+||+|+ ++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~-~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLE-DGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEE-ECCEEEECHHHHHHHhC
Confidence 78999999999999999999999999998887532 1278999999995 77889999999999984
No 148
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.01 E-value=9.3e-10 Score=97.28 Aligned_cols=65 Identities=26% Similarity=0.246 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.+++|+|+ ++|..|+||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLE-LDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 799999999999999999999999999999886431 268999999996 56899999999999984
No 149
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.01 E-value=8.5e-10 Score=98.81 Aligned_cols=66 Identities=12% Similarity=-0.024 Sum_probs=58.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeC-CCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELD-DGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~-dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|++++++|.++|++|+.+.++.... .+||.++||+|+.+ +|..|+||.+|++||.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 689999999999999999999999999988865431 26899999999865 5799999999999995
No 150
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.99 E-value=1.1e-09 Score=97.89 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=58.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.|+++++++++|+++|++|+.+.++..+. .+||.|+||+|+ ++|.+|+||.||++||.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV-DGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 689999999999999999999999999999987542 268999999996 67899999999999986
No 151
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.99 E-value=6.8e-10 Score=98.91 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=58.4
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 3 CLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 3 Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
||+++.||+|++++++|.++|++|+.+.++..+. .++|.++||+|+ +||.+|+||.+|++||.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~-~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV-DDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE-ETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEE-ECCEEEeCHHHHHHHHH
Confidence 8999999999999999999999999999987763 278999999997 77999999999999996
No 152
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.99 E-value=9.1e-10 Score=97.25 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=58.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.++++++++++|+++|++|+.+.++..+ ..+||+++||+|+ ++|..|+||.||++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~es~aI~~yL~ 71 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLE-IDGKKLTQSNAILRYLA 71 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEE-ECCEEEEecHHHHHHhh
Confidence 78999999999999999999999999999888653 2378999999996 67899999999999985
No 153
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.99 E-value=1.3e-09 Score=96.49 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=58.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++++++|++|+.+.++.... .+||.|+||+|+ ++|..|+||.||++||.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLV-DRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 799999999999999999999999999998886542 378999999995 67789999999999996
No 154
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.98 E-value=1.3e-09 Score=96.70 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLS-KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++++++++.|++|+.+.++.... .+||. +++|+|+ ++|.+|+||.||++||.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLL-HNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEE-ECCEEeehHHHHHHHHH
Confidence 799999999999999999999999999988887532 36895 9999997 57899999999999995
No 155
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.98 E-value=1.2e-09 Score=96.75 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=58.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.++++++++++|.++|++|+.+.++... ..+||+|+||+|+ +||..|+||.||++||+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFK-DGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEE-ECCEEEEcHHHHHHHHh
Confidence 78999999999999999999999999999987632 2378999999996 67899999999999996
No 156
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.97 E-value=1.4e-09 Score=97.07 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=58.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.++... ..+||.|++|+|+ ++|..|+||.||++||.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~-~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALE-DGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEE-ECCEEEEcHHHHHHHHh
Confidence 68999999999999999999999999999888642 1278999999996 67899999999999996
No 157
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.97 E-value=1.6e-09 Score=104.73 Aligned_cols=98 Identities=21% Similarity=0.375 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCC------C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNP------K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g------~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+++++++|+.|..+.+.|.+..++... . ...+.+.+.+..||++|. ++||+|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478899999999999999876554311 0 123357888999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
.++.... .....||+|.+|+++|.++|.++++
T Consensus 82 ~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~k~~ 113 (114)
T cd03188 82 RWAPGVG---LDLSDWPNLAAYLARVAARPAVQAA 113 (114)
T ss_pred HHHhhcC---CChhhChHHHHHHHHHHhCHHhHhh
Confidence 8764322 2346799999999999999999875
No 158
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.95 E-value=2e-09 Score=99.32 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=59.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.++.... .+||.++||+|+.++|..|+||.||++||.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 689999999999999999999999999998887542 278999999998666899999999999984
No 159
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.94 E-value=1.7e-09 Score=96.54 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=56.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLS-KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+|++++..+++.++|++|++.|++|+.+.+++... ..||. |+||+|+.++|..|+||.||++||+
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhC
Confidence 677777777799999999999999999999998442 26899 9999998666999999999999995
No 160
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.94 E-value=2.5e-09 Score=95.79 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=57.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.+ ++++++++|.+.|++|+.+.++..+. .+||.+++|+|+.+||..|+||.+|++||.
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 789999976 58999999999999999998887542 278999999998777999999999999996
No 161
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.94 E-value=2.1e-09 Score=102.79 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCC
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSK 145 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~ 145 (1175)
.++++++.|+.|..+.+.+.+..+..... .....+.+.|..||++|. ++|++|+++|+|||++++.+.++.....
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~ 81 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALGI 81 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcCC
Confidence 46889999999999988888765543111 234467889999999999 9999999999999999999865432221
Q ss_pred CCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 146 VRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 146 ~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
.....+|+|.+|+++|.++|+++.+
T Consensus 82 --~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 82 --ELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred --CCcccchHHHHHHHHHHCCHHHHHh
Confidence 1224799999999999999999875
No 162
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.7e-09 Score=112.45 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=120.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCcc---------c------c------------------cCCCCccc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVAD---------A------R------------------LLLSKTVP 45 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~---------~------~------------------~~P~g~vP 45 (1175)
+.||.+-.||.++|.+|+-+++|++ +.+..|+..- . + .+..-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 3689999999999999999999995 3333333211 0 0 11234699
Q ss_pred EEEeCCCcEE--eCHHHHHHHHc-------CC--C---hHHHHHHHHHHHHHhhhchhhhhhhhcCC-----CCchHHHH
Q psy7266 46 VLELDDGSQL--FSANQSCLYLS-------KF--D---TKNESAINQWLEWESVELFPSVLSFFDNP-----KVLPDNLK 106 (1175)
Q Consensus 46 ~L~~~dG~~l--~eS~aI~~YL~-------p~--~---~~~~a~v~~wl~~~~~~l~p~~~~~~~~g-----~~~~~~l~ 106 (1175)
+|....-.+| .||..|+|.|- .. + ..-+.+++.|.+|.-..+...+...-+.. +.+...+-
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF 211 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLF 211 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHH
Confidence 9986554444 39999999984 11 1 13477788888876555433222221111 12334677
Q ss_pred HHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHh-----hCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 107 TKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLL-----SDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 107 ~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~-----~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
..|+.||..|+ +.||+|+++|-||+.++++|.++- ...+.......||||..|...+-+.|.|++..
T Consensus 212 ~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~ 284 (324)
T COG0435 212 EALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETV 284 (324)
T ss_pred HHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccccccc
Confidence 88999999999 999999999999999999998753 22233344566999999999999999998864
No 163
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.93 E-value=2.7e-09 Score=96.53 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=57.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCC--CcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDD--GSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~d--G~~l~eS~aI~~YL~ 66 (1175)
|+||+++. |++++++++|.++|++|+.+.+++..+ .+||.++||+|+.++ |..|+||.||++||.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 68999986 999999999999999999999986431 268999999997654 899999999999996
No 164
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.92 E-value=2.3e-09 Score=96.03 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---ccCCCCcccEEEeC---CCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---RLLLSKTVPVLELD---DGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---~~~P~g~vP~L~~~---dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|++++++|.++|++|+.+.++.... ..+|.++||+|+.+ +|.+|+||.+|++||.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 689999999999999999999999999998876431 25899999999866 5899999999999985
No 165
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.91 E-value=2.2e-09 Score=105.85 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhC--
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSD-- 143 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~-- 143 (1175)
.+++.+++|+.|..+.+.+.+..++.... .....+.+.|+.||++|. ++||+|+++|+|||++++.+.++...
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46889999999999999888766654221 224467889999999999 99999999999999999988875321
Q ss_pred --CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 144 --SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 144 --~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.........||++.+|+++|.++|++++++...
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 111113467999999999999999999987654
No 166
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.90 E-value=4.6e-09 Score=102.47 Aligned_cols=98 Identities=24% Similarity=0.403 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CCC----------------CchHHHHHHHHHHHHHhc-CCcccCCCC
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD---NPK----------------VLPDNLKTKLNVLNEAIS-NSFLIENST 126 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~----------------~~~~~l~~~L~~Le~~L~-~~fLvG~~l 126 (1175)
|.++.+++++++|+.|..+.+.+.+...++ .+. .....+.+.|+.||++|+ ++||+|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 457789999999999999999988654322 111 112357888999999999 999999999
Q ss_pred CccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 127 TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 127 TlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
|+|||++++.+.++..... ....||+|.+|+++|.++|
T Consensus 82 t~ADi~l~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARGP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcCc---ccccCchHHHHHHHHhcCC
Confidence 9999999998888643321 4678999999999999876
No 167
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.90 E-value=3.6e-09 Score=93.50 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=58.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.|+++++++++|.++|++|+.+.+++... .++|.+++|+|+ ++|..|+||.||++||.
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV-IDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 799999999999999999999999999999887431 268999999996 66899999999999983
No 168
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.90 E-value=2.4e-09 Score=103.38 Aligned_cols=100 Identities=25% Similarity=0.358 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc---CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD---NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~---~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||+.|+ ++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 3678999999999999987655422 111 123467889999999999 9999999999999999999988
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
...... .....||+|.+|+++|.++|.+++++
T Consensus 81 ~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWIGI--DDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhccc--cchhhchHHHHHHHHHhhCHHHHHhc
Confidence 643322 13567999999999999999999864
No 169
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.89 E-value=1.9e-09 Score=104.84 Aligned_cols=100 Identities=25% Similarity=0.390 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc-------CC-C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD-------NP-K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~-------~g-~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
+++++++|+.|..+.+.+.+...+. .+ . .....+.+.|+.||++|. ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 4778999999998888887654311 11 1 123467888999999999 999999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
.+.++... ........||+|.+|+++|.++|.++++
T Consensus 82 ~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 117 (118)
T cd03187 82 YLQYLMAT-PFAKLFDSRPHVKAWWEDISARPAWKKV 117 (118)
T ss_pred HHHHHHHc-cchhhhhcCchHHHHHHHHHhCHHHHhh
Confidence 98876432 1112356799999999999999999875
No 170
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.89 E-value=3.9e-09 Score=106.50 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC-
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS- 144 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~- 144 (1175)
.++.+++|++|....+.+.+........ .....+...|..||++|. ++|++|+++|+|||++++.+.++....
T Consensus 4 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~ 83 (142)
T cd03190 4 LRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYV 83 (142)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhh
Confidence 4778999999999998887665433211 234567889999999999 999999999999999999987652111
Q ss_pred ----CCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 145 ----KVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 145 ----~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
........||+|.+|+++|.++|++++++...
T Consensus 84 ~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~ 119 (142)
T cd03190 84 QHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFD 119 (142)
T ss_pred hhcccccchhhhCchHHHHHHHHhcCchHhhhcCHH
Confidence 01122458999999999999999999987753
No 171
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.87 E-value=5.8e-09 Score=101.71 Aligned_cols=100 Identities=23% Similarity=0.407 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc----CCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhh
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD----NPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLS 142 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~----~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~ 142 (1175)
+++++++|+.|..+.+.+.+...+. .+. .....+.+.|+.||++|+ ++||+|+++|+|||++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4788999999998888877655443 111 234578899999999999 9999999999999999999988643
Q ss_pred CCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 143 DSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 143 ~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
... .....+|+|.+|+++|.++|.++++.
T Consensus 82 ~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 LLP--LDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred hcC--CChhhCchHHHHHHHHHcccchHHHH
Confidence 111 22467999999999999999999865
No 172
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=98.86 E-value=4.9e-09 Score=94.35 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=57.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--ccC-----CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--RLL-----LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~~~-----P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.++++++++++|.+.|++|+.+.++..+. ..+ |+|+||+|+ +||.+|+||.||++||+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~-~~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVE-IDGMKLVQTRAILNYIA 73 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEE-ECCEEEeeHHHHHHHHH
Confidence 589999999999999999999999999999886442 233 689999996 68899999999999996
No 173
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.86 E-value=6.7e-09 Score=97.17 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=69.1
Q ss_pred cCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC
Q psy7266 66 SKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS 144 (1175)
Q Consensus 66 ~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~ 144 (1175)
.|.++.+.+++++|+++....+. .....++...+..||++|. ++|++|+++|+|||++++.+.+. .
T Consensus 11 ~~~~~~~~~~vd~~~d~~~~~l~----------~~~~~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---~ 77 (96)
T cd03200 11 APNAPNAATNIDSWVDTAIFQLA----------EGSSKEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---G 77 (96)
T ss_pred cCCCchHHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc---c
Confidence 37888899999999997653432 1356677899999999999 99999999999999999998753 1
Q ss_pred CCCCCcccchhHHHHHHHHhcC
Q psy7266 145 KVRPLLSSYTNITPWYDRISKL 166 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl~~~ 166 (1175)
.....||||.+|+++|.++
T Consensus 78 ---~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 78 ---LASAAPANVQRWLKSCENL 96 (96)
T ss_pred ---cccccChHHHHHHHHHHhC
Confidence 1236799999999999763
No 174
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.83 E-value=9e-09 Score=100.05 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhcC-----C-----C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccc
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFDN-----P-----K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVAD 130 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~~-----g-----~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlAD 130 (1175)
++.+++.+++|+.|..+.+.+.+...+.. + . .....+.+.|..||++|. ++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 45688999999999888888766554421 1 1 123467889999999999 8999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
|++++.+.++..... .....||+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVKL--RVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcCC--CCccccHHHHHHHHHHHhccCC
Confidence 999999988644332 2246899999999999999863
No 175
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.81 E-value=4.1e-09 Score=103.43 Aligned_cols=105 Identities=22% Similarity=0.415 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc--CC--C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD--NP--K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~--~g--~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
+++.+++|+.|..+.+.+.+...+. .+ . .....+.+.|+.||++|. ++||+|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~ 80 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLL 80 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHH
Confidence 3678999999999999988765543 11 1 123456888999999999 9999999999999999999988
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+............+|+|.+|++++.++|.|++++.+.
T Consensus 81 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 81 GFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 6432221122467999999999999999999877543
No 176
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.81 E-value=8.1e-09 Score=93.60 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=56.3
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cc----c----CCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------AR----L----LLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~----~----~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+||++..+++++++++++++.|++|+.+.+++.. .+ . .|+|+||+|+ +||.+|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYI-DGDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEE-ECCEEEeehHHHHHHHh
Confidence 7999999999999999999999999999998743 11 1 2999999996 78899999999999996
No 177
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.81 E-value=1.3e-08 Score=90.85 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=56.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++. +++++++++|.++|++|+.+.++... ..+||.++||+|+ ++|..|+||.||++||.
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLV-DGDLVLTESAAIILYLA 72 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 78999886 67999999999999999999988642 1278999999995 77899999999999996
No 178
>KOG1195|consensus
Probab=98.79 E-value=6.8e-07 Score=102.13 Aligned_cols=348 Identities=16% Similarity=0.177 Sum_probs=193.1
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHH
Q psy7266 256 KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335 (1175)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~i 335 (1175)
...|+....+.... ....++++|....||.+-+.|+||.|..+| +-+++.-.+..|++|.-+-..-++|..+
T Consensus 92 ~~i~~~~~~~g~~~-------~~~~k~iVVefSSPNIAK~FHvGhLRsTii-G~flanl~e~~G~~Vtr~NYLGDWGkQF 163 (567)
T KOG1195|consen 92 PIIEEQREKYGKNE-------LGSGKKIVVEFSSPNIAKPFHVGHLRSTII-GNFLANLHEALGWEVTRVNYLGDWGKQF 163 (567)
T ss_pred HHHHHHhcccCccc-------cccCceEEEEecCCCcccccccchhhhhhh-hhHhhhhHHhhCCceeehhhhhHHHHHh
Confidence 55666655553322 124688999999999999999999998887 9999999999999998776555555433
Q ss_pred HHHHH------------------------------HcCCCchhhH----------------------HHHHHHHHHHHhh
Q psy7266 336 ETKAL------------------------------EEGLTPRQIC----------------------DKYFAIHREVYEW 363 (1175)
Q Consensus 336 e~~a~------------------------------~~g~~p~~~~----------------------~~~~~~~~~~~~~ 363 (1175)
-..+. +...+..+.+ +--.+...+.+++
T Consensus 164 gll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~R 243 (567)
T KOG1195|consen 164 GLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNR 243 (567)
T ss_pred hHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 22110 1111111111 1122455677888
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccc
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLIN 443 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~ 443 (1175)
|||.||.+...+ ..+.+..+.+...+...|++...+.....+-.. .
T Consensus 244 l~v~FD~y~gES-qv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~-------------------------------~-- 289 (567)
T KOG1195|consen 244 LNVKFDEYSGES-QVSNEKMQEALDLLRSANLTEEIDGTIVIDLSK-------------------------------I-- 289 (567)
T ss_pred hceeeeeccchH-HHHHHHHHHHHHHHHhcCCcccCCCcEEEEecc-------------------------------c--
Confidence 999999875443 257888888888888888655443222111110 0
Q ss_pred cccccCCcccCCCCccEEeec-ccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCC
Q psy7266 444 AIELIQPRCKQCSQAPTVKSS-TQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522 (1175)
Q Consensus 444 ~~el~~~~c~r~~~~~~~~~~-~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~ 522 (1175)
..+.|..++.+.. ...| -.|.+.. -| +.+.+
T Consensus 290 --------~~~~~~~~V~ksdgttLY-----------------------ltRdiaa-al-~Rl~~--------------- 321 (567)
T KOG1195|consen 290 --------DKKAGKAVVQKSDGTTLY-----------------------LTRDIAA-AL-DRLEK--------------- 321 (567)
T ss_pred --------CcccceEEEEcCCCceeh-----------------------HHHHHHH-HH-HHHHh---------------
Confidence 0000111111100 0111 1111111 11 00111
Q ss_pred CCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccC
Q psy7266 523 PGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSR 602 (1175)
Q Consensus 523 ~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~ 602 (1175)
|..+ ++++++...+--..+.+| -++...|..|.-+-..+..|.+ .-||+.+
T Consensus 322 ------------------y~fd------r~iYVvd~~Q~~hf~~lf-~ilk~mg~~~a~~~qHV~~G~v----~GmsTRk 372 (567)
T KOG1195|consen 322 ------------------YSFD------RLIYVVDSQQKDHFCQLF-EILKKMGFDWAKKLQHVNFGRV----QGMSTRK 372 (567)
T ss_pred ------------------cCcc------eEEEEechHHHHHHHHHH-HHHHHhCchhhhhcceeccccc----ccccccC
Confidence 1111 235666443322222233 3455555443222223333333 5799999
Q ss_pred CCccCchhhhhc---------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHH
Q psy7266 603 GTGVFGNNAKDT---------------------------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655 (1175)
Q Consensus 603 GN~v~~~d~i~~---------------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~ 655 (1175)
|++++..|+++. -.|.-++.+-.+..+ ..++..|+|+++.. +|.+---.+.
T Consensus 373 G~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~r-r~s~yeF~w~~~~~-~~gdtg~yLQ 450 (567)
T KOG1195|consen 373 GKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGR-RISNYEFSWNRVLS-FEGDTGPYLQ 450 (567)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHH-hcccceEEhhhhhe-ecCCchHHHH
Confidence 999999888761 145556666555533 34688899988753 2221111122
Q ss_pred HHHHHHHHHHHHhcCCCCCC----CC---C-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 656 NFINRALSFIEKNYGSTIPE----IS---P-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 656 n~~~r~~~~~~~~~~~~~p~----~~---~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
....|.-++..+ +....++ .. + .+.-..|+..|..+.+.+..+++.++.+..+.+++.++...+..+..
T Consensus 451 Y~HsRL~Slerk-~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~ 527 (567)
T KOG1195|consen 451 YTHSRLRSLERK-FSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKI 527 (567)
T ss_pred HHHHHHHHHHHh-ccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhh
Confidence 223355555443 3332221 11 1 22234577788889999999999999999999999998777776654
No 179
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.78 E-value=8.4e-09 Score=98.95 Aligned_cols=95 Identities=18% Similarity=0.399 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc----CCC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD----NPK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~----~g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+++++++|+.|..+.+.+.+...+. .+. ...+.+.+.|+.||++|. ++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4788999999999999998765432 111 123467899999999999 99999999999999999988
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
....... .....||+|.+|+++|.++|+|
T Consensus 82 ~~~~~~~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFELP---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHcc---cccccCchHHHHHHHHHhCCCC
Confidence 5433221 2357899999999999999864
No 180
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.78 E-value=1.3e-08 Score=99.68 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhc------CCC--C-----chHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFD------NPK--V-----LPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIW 134 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~------~g~--~-----~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~ 134 (1175)
.+++.+++|+.|..+.+.+.+...+. .+. . ..+.+.+.|..||++|. + +||+|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46889999999999888875322211 121 0 12356888999999997 3 7999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.+.++.... .....||+|.+|+++|.++|.+++++
T Consensus 82 ~~~~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~ 117 (121)
T cd03191 82 PQVYNARRFG---VDLSPYPTIARINEACLELPAFQAAH 117 (121)
T ss_pred HHHHHHHHhC---CCcccCcHHHHHHHHHHhChhHHHhC
Confidence 9988764332 22478999999999999999999875
No 181
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.78 E-value=1.2e-08 Score=89.45 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=49.7
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCc----c-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVA----D-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~----~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.||+++|++++++++|++++...+... . ..+||.|+||+|++++|.+++||.+|++||.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 489999999999999999999888431 1 2278999999999889999999999999995
No 182
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.77 E-value=7.2e-09 Score=98.35 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred HHHHHHhhhchhhhhhhhcC-C----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcc
Q psy7266 78 QWLEWESVELFPSVLSFFDN-P----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLS 151 (1175)
Q Consensus 78 ~wl~~~~~~l~p~~~~~~~~-g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~ 151 (1175)
+|+.|..+.+.+.+...+.. . ......+.+.++.||++|+ ++|++|+++|+|||++++.+.++.... ...
T Consensus 3 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~----~~~ 78 (103)
T cd03207 3 RWLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG----LLP 78 (103)
T ss_pred eeeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC----CCC
Confidence 56666666666655443331 1 1234568999999999999 999999999999999999999865432 246
Q ss_pred cchhHHHHHHHHhcCHHHHHHHH
Q psy7266 152 SYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 152 ~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.+|+|.+|+++|.++|.++.+++
T Consensus 79 ~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 79 ERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred CChHHHHHHHHHHcCHHHHHHhc
Confidence 79999999999999999998764
No 183
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.76 E-value=1.8e-08 Score=89.73 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=56.2
Q ss_pred CEEEecC-------CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNR-------NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~-------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++ .||++++++++|+++|++|+.+.++.. ..+|.|+||+|+ ++|.+|+||.+|++||.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--~~~p~g~vPvl~-~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--KRSPKGKLPFIE-LNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--cCCCCCCCCEEE-ECCEEEcCHHHHHHHHH
Confidence 4789887 589999999999999999999887753 578999999997 67899999999999996
No 184
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.76 E-value=3.5e-08 Score=96.58 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc----CCcccCCCCCccchhHHHHHHHHhh--
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS----NSFLIENSTTVADICIWTCVYPLLS-- 142 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~----~~fLvG~~lTlADi~l~~~L~~~~~-- 142 (1175)
|+..|+.+++|+.|... +...+......| ...+.+.+.++.||+.|. ++|++| ++|+|||++++.+.++..
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~ 77 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKG-DPSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFL 77 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHH
Confidence 46789999999998322 222221111123 346678889999999995 789999 999999999999876431
Q ss_pred -CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 143 -DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 143 -~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
..........||+|.+|+++|.++|+++++...
T Consensus 78 ~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 78 SELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 111112236899999999999999999988654
No 185
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.75 E-value=1.5e-08 Score=92.54 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
..||+++++||+|+++|++|+++.+++.+.. +||.|+||+|+ ++|.+|+||.+|++||.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~-~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL-YNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEE-ECCEEecCHHHHHHHHH
Confidence 4689999999999999999999999987632 79999999996 68899999999999996
No 186
>KOG4244|consensus
Probab=98.74 E-value=7.8e-08 Score=101.63 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=108.5
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----CC--ChHHHHHHHHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS-----KF--DTKNESAINQWL 80 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~-----p~--~~~~~a~v~~wl 80 (1175)
.||+|.++-+.++..+||||.+...+. ..++.|++|-++ -||+.+.+|.-|..+|. +. .+.++++.....
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~~--~rSr~G~lPFIE-LNGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a~s~Al~ 136 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSLK--RRSRNGTLPFIE-LNGEHIADSDLIEDRLRKHFKIPDDLSAEQRAQSRALS 136 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccce--eeccCCCcceEE-eCCeeccccHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 689999999999999999998766553 456889999996 78899999999999996 22 233444333222
Q ss_pred HHHhhhc----------------------------hhhhhhhhc---------------CCCC----chHHHHHHHHHHH
Q psy7266 81 EWESVEL----------------------------FPSVLSFFD---------------NPKV----LPDNLKTKLNVLN 113 (1175)
Q Consensus 81 ~~~~~~l----------------------------~p~~~~~~~---------------~g~~----~~~~l~~~L~~Le 113 (1175)
..++..+ .+.+..++. .|.- -.+-+.+.|+.++
T Consensus 137 rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~ 216 (281)
T KOG4244|consen 137 RMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAIS 216 (281)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHH
Confidence 2222111 111111110 1211 1234588899999
Q ss_pred HHhc-CCcccCCCCCccchhHHHHHHHHhh---CCCCCCCcccchhHHHHHHHHhc
Q psy7266 114 EAIS-NSFLIENSTTVADICIWTCVYPLLS---DSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 114 ~~L~-~~fLvG~~lTlADi~l~~~L~~~~~---~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
..|+ ..||.|+++|-+|+.+++.|..+.. ........+++|||..|.+||..
T Consensus 217 ~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 217 DYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 9999 9999999999999999999987653 11112345689999999999875
No 187
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.74 E-value=1.8e-08 Score=99.40 Aligned_cols=102 Identities=18% Similarity=0.374 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhhchhhhhhhhc--------CCC--------CchHHHHHHHHHHHHH-hc-CCcccCCCCCccchhHH
Q psy7266 73 ESAINQWLEWESVELFPSVLSFFD--------NPK--------VLPDNLKTKLNVLNEA-IS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 73 ~a~v~~wl~~~~~~l~p~~~~~~~--------~g~--------~~~~~l~~~L~~Le~~-L~-~~fLvG~~lTlADi~l~ 134 (1175)
++.+++|+.|..+.+.+.+...+. .+. ...+.+.+.+..||++ ++ ++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 466889999998888776543211 111 1123578889999997 45 79999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhc--CHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISK--LPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~--~P~~~~~l~~~ 176 (1175)
+.+.+...... .....||+|.+|+++|.+ +|+++++...+
T Consensus 82 ~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~~ 123 (126)
T cd03183 82 CEIMQPEAAGY--DVFEGRPKLAAWRKRVKEAGNPLFDEAHKII 123 (126)
T ss_pred HHHHHHHhcCC--cccccCchHHHHHHHHHHhcchhHHHHHHHH
Confidence 98877543222 235789999999999999 99999987655
No 188
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.72 E-value=4.1e-08 Score=85.22 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|+++++++.+.|++|+.+.++.... ..+|.+++|+|+ .+|..++||.+|++||.
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLE-DGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 789999999999999999999999999999887642 267999999996 56899999999999984
No 189
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.66 E-value=7.7e-08 Score=87.72 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=55.3
Q ss_pred CEEEec-------CCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSN-------RNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~-------~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||.. +.||++++++++|.++|++|+.+.++..+. .+||.++||+|+.++|..|+||.+|++||.
T Consensus 1 ~~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 1 ITLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CeeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 466754 568999999999999999999998886542 248999999997543899999999999996
No 190
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.65 E-value=6.7e-08 Score=85.28 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=56.4
Q ss_pred CEEEecC-------CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNR-------NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~-------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|.||.++ .||+|++++++|+++|++|+.+.++... ++|.|+||+|+ ++|..|+||.+|++||.
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--~~p~g~vP~l~-~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--RSPTGKLPFLE-LNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--cCCCcccCEEE-ECCEEEcCHHHHHHHHh
Confidence 5788877 8999999999999999999999887643 78999999996 67899999999999985
No 191
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.65 E-value=1.7e-08 Score=95.26 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=67.9
Q ss_pred HHHHHHHhhhchhhhhhhhc--CC------CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC
Q psy7266 77 NQWLEWESVELFPSVLSFFD--NP------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR 147 (1175)
Q Consensus 77 ~~wl~~~~~~l~p~~~~~~~--~g------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~ 147 (1175)
++|+.|..+.+.+.....+. .+ +...+.+.+.++.||++|+ ++|++|+++|+|||++++.+.+.... .
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~---~ 78 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGAPLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEG---G 78 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhcc---C
Confidence 56888887777654333221 11 1335678999999999999 99999999999999999998764322 2
Q ss_pred CCcccchhHHHHHHHHhcCHHH
Q psy7266 148 PLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 148 ~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
.....||+|.+|+++|.++|.+
T Consensus 79 ~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 79 VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred CChhhCcHHHHHHHHHHhCcCC
Confidence 3357899999999999999864
No 192
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=98.64 E-value=9.3e-08 Score=94.14 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCC---CCchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHHHhhCCC
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNP---KVLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYPLLSDSK 145 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g---~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~~~~~~~ 145 (1175)
+|+..+.|+++.+ .+.+.+...+... ....+.+...|..||++|. ++|++|+++|+|||++++.+.++.....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~ 80 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKL 80 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHh
Confidence 4788899999987 4444444443321 1345678889999999997 6899999999999999999877542211
Q ss_pred ---CCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 146 ---VRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 146 ---~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.......||+|.+|+++|.++|.++.++...
T Consensus 81 ~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~ 114 (124)
T cd03184 81 LLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDT 114 (124)
T ss_pred hccccCCcccChHHHHHHHHhccChHHHHHhCCH
Confidence 1124578999999999999999999987654
No 193
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.64 E-value=7e-08 Score=85.43 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=53.5
Q ss_pred ecCCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 5 SNRNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 5 ~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
....|+++++++++|+++|++|+.+.+++... .+||.|++|+|+ ++|..|+||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLV-DGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEE-ECCEEEEcHHHHHHHhC
Confidence 35678999999999999999999999987541 378999999996 67899999999999984
No 194
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.61 E-value=7e-08 Score=95.07 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=69.0
Q ss_pred hhchhhhhhhhcC-----CCCchHHHHHHHHHHHHHhc-----------------CCcccCCCCCccchhHHHHHHHHhh
Q psy7266 85 VELFPSVLSFFDN-----PKVLPDNLKTKLNVLNEAIS-----------------NSFLIENSTTVADICIWTCVYPLLS 142 (1175)
Q Consensus 85 ~~l~p~~~~~~~~-----g~~~~~~l~~~L~~Le~~L~-----------------~~fLvG~~lTlADi~l~~~L~~~~~ 142 (1175)
..+++.+..++.. ++.....+...|..||++|. ++||+|+++|+|||++++.+.++..
T Consensus 9 ~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~ 88 (134)
T cd03198 9 EDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKV 88 (134)
T ss_pred HHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4566666666542 23445678999999999996 3599999999999999999886531
Q ss_pred C---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 143 D---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 143 ~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
. .........||||.+|+++|.++|+|++++..-
T Consensus 89 ~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~ 125 (134)
T cd03198 89 VAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPAD 125 (134)
T ss_pred HHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCH
Confidence 1 011122478999999999999999999986543
No 195
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.59 E-value=1.2e-07 Score=92.97 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.+.+.+.|..||++|. ++||+|+++|+|||++++.+.++..... .....||+|.+|+++|.++|.++++++.-
T Consensus 37 ~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~vk~~~~~~ 110 (121)
T cd03209 37 LAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFEP--DCLDAFPNLKDFLERFEALPKISAYMKSD 110 (121)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhCc--cccccChHHHHHHHHHHHCHHHHHHHhcc
Confidence 3456888999999999 9999999999999999999988653222 23568999999999999999999987643
No 196
>KOG2903|consensus
Probab=98.59 E-value=8.6e-08 Score=100.16 Aligned_cols=172 Identities=16% Similarity=0.140 Sum_probs=115.2
Q ss_pred EEEecCCCchHHHHHHHHHhcCCC--cEEEEecC----------------ccc--------c-----------------c
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTK--LDVELVDV----------------ADA--------R-----------------L 38 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~----------------~~~--------~-----------------~ 38 (1175)
-||....||.+.|++++.+++|++ +-+..+.. .+. . .
T Consensus 39 hLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y 118 (319)
T KOG2903|consen 39 HLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNY 118 (319)
T ss_pred EEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCCC
Confidence 589999999999999999999985 11222221 010 0 0
Q ss_pred CCCCcccEEEeCCC--cEEeCHHHHHHHHcC---------C-------ChHHHHHHHHHHHHHhhhchhhhhhhhc--CC
Q psy7266 39 LLSKTVPVLELDDG--SQLFSANQSCLYLSK---------F-------DTKNESAINQWLEWESVELFPSVLSFFD--NP 98 (1175)
Q Consensus 39 ~P~g~vP~L~~~dG--~~l~eS~aI~~YL~p---------~-------~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g 98 (1175)
...-+||||.+..- .+=.||..|+|.+-. . .+..++++++|..|.-..+...+...-+ .+
T Consensus 119 ~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA~~~ 198 (319)
T KOG2903|consen 119 TGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFAEKQ 198 (319)
T ss_pred CceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeecccccc
Confidence 12346999975433 233499999999840 0 1245788899888875554333222211 11
Q ss_pred C---CchHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHHHHHh-----hCCCCC-CCcccchhHHHHHHHHhc-
Q psy7266 99 K---VLPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCVYPLL-----SDSKVR-PLLSSYTNITPWYDRISK- 165 (1175)
Q Consensus 99 ~---~~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L~~~~-----~~~~~~-~~~~~~p~L~~W~~rl~~- 165 (1175)
+ ..-..+-+.|+.+|+.|. + .|++|+++|.|||.+++++.++- ...+.. ..+..||+|..|..++-.
T Consensus 199 e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~ 278 (319)
T KOG2903|consen 199 EAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWN 278 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhh
Confidence 1 222356778899999999 4 49999999999999999987743 111211 345699999999999988
Q ss_pred CHHHHHHH
Q psy7266 166 LPQVQKAL 173 (1175)
Q Consensus 166 ~P~~~~~l 173 (1175)
.|.|+...
T Consensus 279 ~~~~~~Tt 286 (319)
T KOG2903|consen 279 IPGFSSTT 286 (319)
T ss_pred ccchhhcc
Confidence 89888763
No 197
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.58 E-value=2.9e-07 Score=89.18 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhh----cCCC-------CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFF----DNPK-------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~----~~g~-------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L 137 (1175)
.+++++.+|+.|..+.+.+...... +.+. .....+.+.+..||.+|. ++||+| .+|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 5788999999999999987522111 1111 224567889999999996 599999 5999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.++..... ... |++.+|++||.++|+|++.++
T Consensus 81 ~~~~~~g~---~l~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLNGD---PVP--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHcCC---CCC--HHHHHHHHHHHCCHHHHHHHh
Confidence 99754433 222 999999999999999999774
No 198
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.56 E-value=1.1e-07 Score=88.56 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
...+.+.|+.+|++|. ++|++|+++|+|||++++.+.++........ ...||+|.+|+++|.++|
T Consensus 30 ~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 30 RAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcc-cccCHHHHHHHHHHHcCC
Confidence 4567888999999999 9999999999999999999999765544211 389999999999999987
No 199
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.52 E-value=9.5e-08 Score=90.06 Aligned_cols=92 Identities=22% Similarity=0.445 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhc---CCCCchHHHHHHHHHHHHHhc-CC--cccCCCCCccchhHHHHHHHHhh
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFD---NPKVLPDNLKTKLNVLNEAIS-NS--FLIENSTTVADICIWTCVYPLLS 142 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~~~~~~l~~~L~~Le~~L~-~~--fLvG~~lTlADi~l~~~L~~~~~ 142 (1175)
++..++.+++|++|.. .+......... .+....+++...|..||++|+ +. ||+|+++|+|||++|+.|..+.
T Consensus 2 ~~~~~a~i~~W~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~- 79 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV-AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLR- 79 (99)
T ss_dssp --TTHHHHHHHHH-GH-CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHhccc-hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh-
Confidence 3456788899999661 00000000000 011345688999999999999 76 9999999999999999997653
Q ss_pred CCCCCCCcccchhHHHHHHHHhc
Q psy7266 143 DSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 143 ~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
.. .. ...||||.+|++||.+
T Consensus 80 -~~-~~-~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 -WA-DF-PKDYPNLVRWYERIEE 99 (99)
T ss_dssp -CC-HH-TTTCHHHHHHHHHHHT
T ss_pred -hc-cc-ccccHHHHHHHHhhcC
Confidence 11 11 1689999999999974
No 200
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.52 E-value=1.2e-07 Score=92.89 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=68.1
Q ss_pred hchhhhhhhhcCC---CCchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHHHhhC-C--CCCCCcccchhHH
Q psy7266 86 ELFPSVLSFFDNP---KVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSD-S--KVRPLLSSYTNIT 157 (1175)
Q Consensus 86 ~l~p~~~~~~~~g---~~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~-~--~~~~~~~~~p~L~ 157 (1175)
.+++.+..++... ....+.+.+.|..||.+|. ++||+|+++|+|||++++.+.++... . ........||+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~ 92 (121)
T cd03201 13 KIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVK 92 (121)
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHH
Confidence 4444444444311 1234567888999999997 69999999999999999977665321 1 0111247899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Q psy7266 158 PWYDRISKLPQVQKALKTWTEVLK 181 (1175)
Q Consensus 158 ~W~~rl~~~P~~~~~l~~~~~~~k 181 (1175)
+|+++|.++|+|++++..-..+..
T Consensus 93 ~w~~rl~~rps~~~t~~~~~~~~~ 116 (121)
T cd03201 93 SYMKALFSRESFVKTKAEKEDVIA 116 (121)
T ss_pred HHHHHHHCCchhhhcCCCHHHHHH
Confidence 999999999999998765444443
No 201
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.52 E-value=8.6e-08 Score=91.08 Aligned_cols=90 Identities=22% Similarity=0.345 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc----C--CC-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD----N--PK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~----~--g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+++++++|+.|..+.+.+.+..+.. . .. .....+.+.++.||.+|+ ++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788999999998888887654322 0 11 234567889999999999 89999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHh
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~ 164 (1175)
.++.... .....+|+|.+|++++.
T Consensus 82 ~~~~~~~---~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEGG---FDLADYPAIRAWLARIE 105 (105)
T ss_pred HhccccC---CChHhCccHHHHHHhhC
Confidence 8864322 22577999999999873
No 202
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.48 E-value=2.8e-07 Score=90.96 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhc-C---CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 103 DNLKTKLNVLNEAIS-N---SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~---~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.+.|..||++|. + +||+|+++|+|||++++.+.++..... .....||+|.+|+++|.++|.+++++..
T Consensus 38 ~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~v~~~~~~ 112 (126)
T cd03210 38 KDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP--GCLDAFPLLKAFVERLSARPKLKAYLES 112 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh--HhhhcChHHHHHHHHHHhCcHHHHHHhC
Confidence 457788999999998 5 799999999999999999988643221 2357899999999999999999998754
No 203
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.48 E-value=5.1e-07 Score=90.48 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 104 NLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 104 ~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.+.+.|..||++|. ++|++|+++|+|||++++.+.++..... .....||+|.+|+++|.++|.+++++..-
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~--~~l~~~P~l~~~~~rv~~~P~vk~~~~~~ 116 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDP--SLLSDFPLLQAFKTRISNLPTIKKFLQPG 116 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhch--hhhccChHHHHHHHHHHcCHHHHHHHhcC
Confidence 34788999999997 5799999999999999999988643222 23578999999999999999999988753
No 204
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.47 E-value=2.1e-07 Score=88.89 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHHhc-C----------CcccCCCCCccchhHHHHHHHHhhCCCCCC--CcccchhHHHHHHHHhcCH
Q psy7266 101 LPDNLKTKLNVLNEAIS-N----------SFLIENSTTVADICIWTCVYPLLSDSKVRP--LLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 101 ~~~~l~~~L~~Le~~L~-~----------~fLvG~~lTlADi~l~~~L~~~~~~~~~~~--~~~~~p~L~~W~~rl~~~P 167 (1175)
....+.+.|+.||++|. + +||+|+++|+|||++++.+.++........ ....||+|.+|++||.++|
T Consensus 30 ~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aRp 109 (111)
T cd03204 30 ILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQRE 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHcCC
Confidence 45678899999999998 6 499999999999999999988754322111 1368999999999999998
Q ss_pred HH
Q psy7266 168 QV 169 (1175)
Q Consensus 168 ~~ 169 (1175)
+|
T Consensus 110 sf 111 (111)
T cd03204 110 SF 111 (111)
T ss_pred CC
Confidence 75
No 205
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.44 E-value=2.7e-07 Score=80.59 Aligned_cols=61 Identities=26% Similarity=0.530 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDR 162 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~r 162 (1175)
.+.+.+.|+.||.+|. ++|++|+++|+|||++++.+.++............||+|.+|++|
T Consensus 8 ~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 8 RAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4667889999999999 899999999999999999999986554433446899999999986
No 206
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.35 E-value=1.6e-06 Score=84.04 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=63.7
Q ss_pred HHHHHHHhhhchhhhhhhhc-------CC-------CCchHHHHHHHHHHHHHh---c-CCcccCCCCCccchhHHHHHH
Q psy7266 77 NQWLEWESVELFPSVLSFFD-------NP-------KVLPDNLKTKLNVLNEAI---S-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 77 ~~wl~~~~~~l~p~~~~~~~-------~g-------~~~~~~l~~~L~~Le~~L---~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
+.|..+..+.+.+.+..++. .+ ....+.+.+.+..+|..| + ++||+|+ +|+|||++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~ 82 (114)
T cd03194 4 RAWARSAAAEMHSGFAALRSECPMNLRARVPGFELSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVT 82 (114)
T ss_pred hHHHHHHHHHHHCcHHHHHHhCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHH
Confidence 44555666666555544332 01 122344566677777666 4 7899999 9999999999998
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
++..... .. .|+|.+|+++|.++|.+++.++
T Consensus 83 ~~~~~~~---~~--~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 83 RFRTYGL---PL--SPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHcCC---CC--CHHHHHHHHHHHCCHHHHHHHh
Confidence 8643321 12 3999999999999999998764
No 207
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.33 E-value=1.4e-06 Score=76.46 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.++++.+++++|++.|+||+.+... .....+|.|+||+|+ +||.+|+||+||+.||.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~-~~~~~~P~GkVP~L~-~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA-NAEFMSPSGKVPFIR-VGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC-CccccCCCCcccEEE-ECCEEEeCHHHHHHHHh
Confidence 46789999999999999999987432 123477899999996 58899999999999985
No 208
>KOG1148|consensus
Probab=98.29 E-value=4.7e-07 Score=104.43 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=75.4
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
-++|..||-|||+|||||+....+ .==+|+++ .|. -..+..+++|+...++|++.|.++..
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInv-NFgyAk~~--~G~----------------cyLRfDDTNPEkEee~yf~sI~e~V~ 308 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINV-NFGYAKAH--GGV----------------CYLRFDDTNPEKEEEEYFESIKEMVA 308 (764)
T ss_pred eeEEeCCCCCCceeeecchhheee-chhhhhhh--CCe----------------EEEecCCCCcchhhHHHHHHHHHHHH
Confidence 478999999999999999996554 44444442 222 11234568999999999999999999
Q ss_pred hccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 363 WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 363 ~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||..+- .-|.+..|++...+.-..|+++|++|..
T Consensus 309 WLG~~P~--kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 309 WLGFEPY--KVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred HhCCCce--eeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 9998764 3466667999999999999999999963
No 209
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=98.27 E-value=8.1e-07 Score=69.27 Aligned_cols=41 Identities=39% Similarity=0.487 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhc
Q psy7266 1108 AEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149 (1175)
Q Consensus 1108 ~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~ 1149 (1175)
++|..||+.||.||.++ +++.+|+.+|+.|+.||++|+.+|
T Consensus 2 ~~i~~qg~~vR~lK~~~-a~k~~~~~~v~~L~~lK~~~~~~~ 42 (42)
T cd01200 2 EKIAEQGDLVRKLKAEK-APKEEIDAAVKKLLALKAQYKEAT 42 (42)
T ss_pred cHHHHhHHHHHhccccC-CCHHHHHHHHHHHHHHHHHhhhcC
Confidence 57999999999999987 799999999999999999999865
No 210
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=98.24 E-value=5.5e-07 Score=70.23 Aligned_cols=41 Identities=39% Similarity=0.544 Sum_probs=38.6
Q ss_pred HHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHh
Q psy7266 1038 AAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078 (1175)
Q Consensus 1038 ~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~ 1078 (1175)
++|..||+.||.||.+++++.+|+.+|+.|++||++|+..|
T Consensus 2 ~~i~~qg~~vR~lK~~~a~k~~~~~~v~~L~~lK~~~~~~~ 42 (42)
T cd01200 2 EKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKEAT 42 (42)
T ss_pred cHHHHhHHHHHhccccCCCHHHHHHHHHHHHHHHHHhhhcC
Confidence 57999999999999999999999999999999999999765
No 211
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.18 E-value=1.5e-06 Score=81.33 Aligned_cols=87 Identities=23% Similarity=0.442 Sum_probs=65.2
Q ss_pred HHHHHHHhhhchhhhhhhhcCC-----C------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC
Q psy7266 77 NQWLEWESVELFPSVLSFFDNP-----K------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS 144 (1175)
Q Consensus 77 ~~wl~~~~~~l~p~~~~~~~~g-----~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~ 144 (1175)
++|+.|....+.+.+....... . ...+.+.+.++.||++|. +.|++|+++|+|||++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 5678888877777655554311 1 123467899999999999 999999999999999999999876433
Q ss_pred CCCCCcccchhHHHHHHHH
Q psy7266 145 KVRPLLSSYTNITPWYDRI 163 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl 163 (1175)
........+|+|.+|+++|
T Consensus 82 ~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred hhhhhhccCccHHHHHHhC
Confidence 2111257899999999875
No 212
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.14 E-value=3.5e-06 Score=77.49 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC----CCcccchhHHHHHHHHh
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR----PLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~----~~~~~~p~L~~W~~rl~ 164 (1175)
.+.+.+.++.||++|+ ++|++|+++|+|||++++.+.++....... .....||+|.+|+++|.
T Consensus 21 ~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 21 YSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 5677899999999999 999999999999999999998864321111 12467999999999873
No 213
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.06 E-value=7.9e-06 Score=80.39 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhc
Q psy7266 100 VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 100 ~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
...+.+.+.|+.||++|+ ++|++|+++|+|||++++.+.+...... ......||+|.+|++||.+
T Consensus 58 ~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~-~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 58 AALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSP-FPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCc-ccccccCChHHHHHHHHhc
Confidence 445678999999999999 9999999999999999999988654222 1235789999999999976
No 214
>KOG3027|consensus
Probab=97.99 E-value=5.5e-05 Score=76.92 Aligned_cols=157 Identities=11% Similarity=0.197 Sum_probs=107.7
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHcC--------CChHHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSK--------FDTKNESAINQ 78 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p--------~~~~~~a~v~~ 78 (1175)
+.+..|+.|...|+..++||.++. ....+.++|.|+||.|. .+..++.|=.+|+.++.. -+-.+++.++.
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~-~~NaefmSP~G~vPllr-~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQ-RANAEFMSPGGKVPLLR-IGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeee-cCCccccCCCCCCceee-ecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 456779999999999999999754 33456789999999994 668889999999999851 11123444444
Q ss_pred HHHHHhhhchhh--------------hhhhhc----------------------------CCCC----chHHHHHHHHHH
Q psy7266 79 WLEWESVELFPS--------------VLSFFD----------------------------NPKV----LPDNLKTKLNVL 112 (1175)
Q Consensus 79 wl~~~~~~l~p~--------------~~~~~~----------------------------~g~~----~~~~l~~~L~~L 112 (1175)
.+.+....+..+ +....+ .+.. ..+++..+++.|
T Consensus 110 ~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aL 189 (257)
T KOG3027|consen 110 YVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRAL 189 (257)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHH
Confidence 444433322211 111000 1111 134568889999
Q ss_pred HHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCC----CCCcccchhHHHHHHHHhc
Q psy7266 113 NEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKV----RPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 113 e~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~----~~~~~~~p~L~~W~~rl~~ 165 (1175)
...|+ .+||.|+++|-+|..+++.++.+.-.... .....+|+||.++-.||++
T Consensus 190 sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 190 SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999 99999999999999999999887522111 1235678888888888764
No 215
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=97.93 E-value=2.6e-05 Score=77.72 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhc
Q psy7266 102 PDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
++.|...++.+=+.+. ++|+.|+++|+|||+++++|..+..... ......||+|.+|++||.+
T Consensus 81 r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~-~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 81 REWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPA-FKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhcc-ccchhhCcCHHHHHHHHHH
Confidence 4445555554444444 6899999999999999999988643322 1156789999999999975
No 216
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=97.92 E-value=1.9e-05 Score=74.93 Aligned_cols=89 Identities=17% Similarity=0.338 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCCC----------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNPK----------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g~----------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~ 138 (1175)
+++.+++|++.. ..+...+...++... ...+.+.+.++.||++|. ++|++|+++|+|||++++.+.
T Consensus 2 e~~~v~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTI-ADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 356677877764 345555544443211 123467889999999996 579999999999999999998
Q ss_pred HHhhCCCCCCC-cccchhHHHHHHHH
Q psy7266 139 PLLSDSKVRPL-LSSYTNITPWYDRI 163 (1175)
Q Consensus 139 ~~~~~~~~~~~-~~~~p~L~~W~~rl 163 (1175)
++..... .. ...||+|.+|++++
T Consensus 81 ~~~~~~~--~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLDP--KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhhCc--hhhHHhChhHHHHHHhC
Confidence 8643322 22 67899999999875
No 217
>KOG3028|consensus
Probab=97.85 E-value=0.00022 Score=77.99 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=114.4
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHcC------C--C--hHHHHHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSK------F--D--TKNESAIN 77 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p------~--~--~~~~a~v~ 77 (1175)
.++.|..+++.+++.+-|.+++..+ +....|.|++|+|+.++|..+.+-.-|+.||-- . + ..+.+++.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ss--N~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~ 93 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSS--NPWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTL 93 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeec--CCCCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHH
Confidence 5788999999999999766665443 233568899999999999999999999999851 1 1 34677888
Q ss_pred HHHHHHhhhchhhhhhhhcC-----------------------------------------CCCc--hH----HHHHHHH
Q psy7266 78 QWLEWESVELFPSVLSFFDN-----------------------------------------PKVL--PD----NLKTKLN 110 (1175)
Q Consensus 78 ~wl~~~~~~l~p~~~~~~~~-----------------------------------------g~~~--~~----~l~~~L~ 110 (1175)
.|+.+..+.+.+++...++. |... .+ ....+++
T Consensus 94 a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~ 173 (313)
T KOG3028|consen 94 AFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALN 173 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 99999888888877665541 1111 11 2377889
Q ss_pred HHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC----CCcccchhHHHHHHHHhc
Q psy7266 111 VLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR----PLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 111 ~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~----~~~~~~p~L~~W~~rl~~ 165 (1175)
.|...|+ ..|++|+++|--|..+++.+..++....-. .....++||.++.+++..
T Consensus 174 ~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 174 LLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 9999999 999999999999999999999865433211 111236777777766653
No 218
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.83 E-value=1.7e-05 Score=74.54 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI 163 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl 163 (1175)
...+.+.|..||++|. ++| +++|+|||++++.+.++............||+|.+|+++|
T Consensus 39 ~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 39 RGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4577889999999999 888 8999999999999988753322222357899999999885
No 219
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.72 E-value=0.00011 Score=64.88 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=52.1
Q ss_pred CEEEecC-------CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNR-------NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~-------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||.++ .||+|.++.+.|+..|++|+++... +....|.|++|+|+ ++|..|.+|..|++||.
T Consensus 1 ~~L~~~~~~~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~--n~~~sp~gkLP~l~-~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 1 MELHVWGGDWGLPSVDPECLAVLAYLKFAGAPLKVVPSN--NPWRSPTGKLPALL-TSGTKISGPEKIIEYLR 70 (73)
T ss_pred CEEEEECCCCCCCcCCHHHHHHHHHHHcCCCCEEEEecC--CCCCCCCCccCEEE-ECCEEecChHHHHHHHH
Confidence 5777543 5789999999999999999886433 24567899999996 67899999999999985
No 220
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.52 E-value=0.0002 Score=64.38 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=55.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--c---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--R---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... . .++..++|++. .||..|.++..|++||+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~-i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVF-IGGKLIGGSDELEAYLA 79 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEE-ECCEEEcCHHHHHHHhC
Confidence 479999999999999999999999999987765421 1 34678999994 78899999999999985
No 221
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.45 E-value=0.0033 Score=64.51 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=80.5
Q ss_pred CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcC-CC----CCCCCC-ChhhHHHHHHH
Q psy7266 616 LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYG-ST----IPEISP-IHEDFLLLALI 689 (1175)
Q Consensus 616 ~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~-~~----~p~~~~-~~~d~~l~~~l 689 (1175)
+|.|++||++++..+. .+++|+++.+..... +-.--+.....|+.+++.+.-. .. +....+ .+.++.++..+
T Consensus 3 i~~~a~~~~~l~~~~~-~~~~fd~~~~~~~~~-~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l 80 (156)
T cd07956 3 VGVGAVKYQDLSNKRI-KDYTFDWERMLSFEG-DTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLL 80 (156)
T ss_pred cchhHHHHHHHhcCCC-CCceecHHHHHhhcC-CCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHH
Confidence 6789999999996554 799999998653211 1112344555688888876431 11 110112 45677888889
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
..+.+.+..++...+++.++..+.++....|.|++.++
T Consensus 81 ~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~ 118 (156)
T cd07956 81 AKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP 118 (156)
T ss_pred HHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 99988889999999999999999999999999998764
No 222
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.34 E-value=0.00014 Score=71.70 Aligned_cols=62 Identities=13% Similarity=0.348 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhC-CCC---CCCcccchhHHHHHHHHh
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSD-SKV---RPLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~-~~~---~~~~~~~p~L~~W~~rl~ 164 (1175)
......|+.|+..|+ ++||+|+++|.||+++++.+..+... ... ......||||.+|.+||.
T Consensus 60 ~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 60 EEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 345788999999999 99999999999999999998876532 111 122568999999999974
No 223
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.31 E-value=0.0025 Score=73.22 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=42.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
.|+++. -|||.|||||..+.+. .++....|+++.+..+ |.|..-. ..+.++ +..+.....+..+|-.
T Consensus 4 ~v~~G~-~PTG~~HlG~~l~~~~-----~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~-~~~~~~~~~~~~~~lA 70 (328)
T TIGR00233 4 RVLTGI-QPSGKMHLGHYLGAIQ-----TKWLQQFGVELFICIA-DLHAITV-----KDNTDP-DALRKAREELAADILA 70 (328)
T ss_pred EEEEee-CCCcHhHHHHHHHHHH-----HHHHHhCCCCEEEEee-cchhhcC-----CCCCCH-HHHHHHHHHHHHHHHH
Confidence 444443 5889999999886554 3444456888765543 3332210 011122 2334444555677888
Q ss_pred ccccccc
Q psy7266 364 FEIDFDY 370 (1175)
Q Consensus 364 lgi~~D~ 370 (1175)
+|+++|.
T Consensus 71 ~GlDp~k 77 (328)
T TIGR00233 71 VGLDPKK 77 (328)
T ss_pred hCcChhh
Confidence 9999874
No 224
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0016 Score=72.97 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=55.0
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
++.|.++. -|||.|||||..+++. .++....++-=.|++=.|.|.+-+ .+..+.+-.+.+...+..+|
T Consensus 5 ~~~vlSG~-~PSG~lHLGny~ga~~-----~~v~~q~~~~~~f~~IaDlha~t~------~~~~~~~~l~~~~~e~~a~~ 72 (314)
T COG0180 5 KFRVLSGI-QPSGKLHLGNYLGAIR-----NWVLLQEEYYECFFFIADLHAITV------RQDPTEEDLRQATREVAADY 72 (314)
T ss_pred CceEEecC-CCCCCcchhHhHHHHH-----HHHHHhcccCceEEEEecHHHhhc------CCCChHHHHHHHHHHHHHHH
Confidence 34555554 5899999999997553 455545554234556667665432 12222244555656666778
Q ss_pred hhccccccc---cCCCCCHHHHHHHH
Q psy7266 362 EWFEIDFDY---FGRTSTPQQTEIVQ 384 (1175)
Q Consensus 362 ~~lgi~~D~---~~~T~~~~~~~~v~ 384 (1175)
-.+||+++. |..+.-++|.+..+
T Consensus 73 LA~GiDP~k~~if~QS~v~e~~eLa~ 98 (314)
T COG0180 73 LAVGLDPEKSTIFLQSEVPEHAELAW 98 (314)
T ss_pred HHhccCccccEEEEccCchHHHHHHH
Confidence 889999986 33455666655444
No 225
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=97.27 E-value=0.00033 Score=70.08 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC----CCcccchhHHHHHHHHhc
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR----PLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~----~~~~~~p~L~~W~~rl~~ 165 (1175)
......|+.|+..|+ ++||+|+++|.+|+++++.+..+....... .....||||.+|++||.+
T Consensus 67 ~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 67 RDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 456788999999999 999999999999999999988765322211 225689999999999874
No 226
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.24 E-value=0.0015 Score=74.95 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=43.6
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.|||||..+++- ...+.+...|.++++ +=.|-|-+ + ...++.++ +++......+|-.+|++++.
T Consensus 11 qPTG~~HLGnylga~k---~~~~lq~~~~~~~~~-~IADlHal-t------~~~~~~~l-~~~~~~~~~~~lA~GlDP~k 78 (332)
T PRK12556 11 KPTGYPHLGNYIGAIK---PALQMAKNYEGKALY-FIADYHAL-N------AVHDPEQF-RSYTREVAATWLSLGLDPED 78 (332)
T ss_pred CCCCcchHHHHHHHHH---HHHHHHHhcCCeEEE-EEechhhc-c------CCCCHHHH-HHHHHHHHHHHhheeecccc
Confidence 4789999999886442 223344444544433 34444433 1 01244443 44444566778899999874
Q ss_pred ---cCCCCCHHHHH
Q psy7266 371 ---FGRTSTPQQTE 381 (1175)
Q Consensus 371 ---~~~T~~~~~~~ 381 (1175)
|..+.-++|.+
T Consensus 79 ~~if~qS~v~~~~e 92 (332)
T PRK12556 79 VIFYRQSDVPEIFE 92 (332)
T ss_pred eEEEECCCchHHHH
Confidence 23344455543
No 227
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.18 E-value=0.0019 Score=72.42 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=42.1
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++.+|.|+.+++..--- +..-.+ ....|..+.. -+| ..+|.|||||.||.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l~rd-la~r~n-~~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLGRE-LARRFN-GFTIAEGLTI-PLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHHHH-HHHHhC-CCCCCeEEee-ccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 78899999876544211 111111 1344555544 455 5899999999999988765543 35555555554
No 228
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.16 E-value=0.0011 Score=58.21 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=54.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|.+++-+|...|++|+.+.++..... .....++|++ ..||..|.++..|.+||+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i-fi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQV-FIDGELIGGSDDLEKYFA 72 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeE-EECCEEEeCHHHHHHHhC
Confidence 4799999999999999999999999998887654411 2356689999 588899999999999984
No 229
>PRK10638 glutaredoxin 3; Provisional
Probab=97.07 E-value=0.0013 Score=59.60 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=54.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... .+++..++|++ ..||..|.+...+..+-.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i-~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQI-FIDAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE-EECCEEEeCHHHHHHHHH
Confidence 479999999999999999999999999988876541 25688899999 478899999888877643
No 230
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.99 E-value=0.0039 Score=72.89 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=54.6
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhc
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWF 364 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 364 (1175)
|.++. -|||.|||||..+++- . ..+.+...|++++|. =.|-|-+- ...+|.++.+. ...+..+|-..
T Consensus 5 vlSGi-qPTG~lHLGNylGaik--~-~v~lq~q~~~~~~~~-IADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGAIR--P-AIAASRQPGVESFYF-LADYHALI-------KCDDPARIQRS-TLEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCcchHHHHHHHHH--H-HHHHHHhCCCcEEEE-eechhhcc-------CCCCHHHHHHH-HHHHHHHHHHh
Confidence 34443 4899999999887442 1 223444458876443 34444331 12355444443 33467788889
Q ss_pred cccccc---cCCCCCHHHHHHHHHHHHHHHHcCC
Q psy7266 365 EIDFDY---FGRTSTPQQTEIVQHLFDRVHKAGF 395 (1175)
Q Consensus 365 gi~~D~---~~~T~~~~~~~~v~~~f~~L~~~G~ 395 (1175)
|++++. |..+.-|+|.+. .|++..+-..|.
T Consensus 72 GlDPek~~if~QSdvpeh~EL-~wiL~~it~~g~ 104 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPEL-TWLLTCVAGKGL 104 (431)
T ss_pred CCCccceEEEECCcchhHHHH-HHHHHhhhhHHH
Confidence 999874 334556666544 555555544443
No 231
>KOG1247|consensus
Probab=96.98 E-value=0.00044 Score=77.47 Aligned_cols=35 Identities=49% Similarity=1.098 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHhhcCCCC
Q psy7266 979 KNSSSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQN 1013 (1175)
Q Consensus 979 ~~~~~~~~g~~~~lf~ki~~~~~~~~~~~~~g~~~ 1013 (1175)
..++||.||+|.|||++|+++++++||+||||+|.
T Consensus 532 ~l~~gH~ig~~~pLFq~l~~~qiee~r~k~gg~q~ 566 (567)
T KOG1247|consen 532 RLLAGHRIGTPSPLFQKLDEDQIEEWRAKFGGQQS 566 (567)
T ss_pred eecCcCccCCccHHHHhcCHHHHHHHHHhhcCCCC
Confidence 46789999999999999999999999999999974
No 232
>cd00935 GlyRS_RNA GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=96.90 E-value=0.0009 Score=54.55 Aligned_cols=45 Identities=38% Similarity=0.488 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHh
Q psy7266 1034 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078 (1175)
Q Consensus 1034 ~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~ 1078 (1175)
..|...|..||+.||.||..++.+.+++.+|..|..+|..++...
T Consensus 2 ~~l~~~v~~qg~~vR~lk~~~a~~~~~~~a~~~L~~~k~~l~~~~ 46 (51)
T cd00935 2 APLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLEDKE 46 (51)
T ss_pred hHHHHHHHHhhHHHHhhccccCcHHHHHHHHHHHHHHHHHhhhHh
Confidence 357899999999999999999999999999999999999887654
No 233
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=96.82 E-value=0.0047 Score=69.58 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D 369 (1175)
-|||.|||||..+++. .+.++ +..|+++.+..+ |.|..-. ...++ +..+++...+..++..+|++++
T Consensus 7 ~PTG~lHLG~~~~al~---~~~~l-Q~ag~~~~~~Ia-D~ha~t~------~~~~~-~~~~~~~~~~~~~~lA~G~dp~ 73 (280)
T cd00806 7 QPSGSLHLGHYLGAFR---FWVWL-QEAGYELFFFIA-DLHALTV------KQLDP-EELRQNTRENAKDYLACGLDPE 73 (280)
T ss_pred CCCchhhHHHHHHHHH---HHHHH-HhCCCCEEEEec-chHHHhC------CCCCH-HHHHHHHHHHHHHHHHcCCCcc
Confidence 4889999999997554 23333 334888665543 4444311 11233 3455666667888888999875
No 234
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.82 E-value=0.0035 Score=74.13 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=40.8
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+.+.+..- --+..-. +...+ ..+.+-.| ..+|.|||||.||.|+.+|=. .+++.++=++++
T Consensus 189 iq~gG~DQ~~ni~~g-rdl~~r~--~~~~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~~---tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILMG-RDLQRKL--EGEEQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPEK---TSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHHH-HHHHHHh--CCCCc-eEeccCCccCCCCCccCCCCCCceeccCCC---CCHHHHHHHHHc
Confidence 788999997654331 1112222 22223 33334444 578999999999999998742 445555555554
No 235
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.72 E-value=0.0035 Score=74.25 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=41.2
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+.+++.. ---+..-. +... -..+..-+| ..+|+|||||.||.|+.+|-. .+++.++=++++
T Consensus 191 i~~gG~DQ~~ni~~-grdla~r~--~~~~-~~~l~~plL~~~~G~KMsKS~~naI~L~d~~---tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWGNILS-GRDLQRRY--GGKP-QFGLTMPLLTGLDGKKMGKSEGNAVWLDEEK---TSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHHHHHH-HHHHHHHh--CCCC-eEEEecCCcCCCCCCcccCCCCCceeCCCCC---CCHHHHHHHHhc
Confidence 78889999764332 11122222 2221 222333344 578999999999999998732 456677766665
No 236
>cd00935 GlyRS_RNA GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=96.58 E-value=0.0036 Score=50.99 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhh
Q psy7266 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSAL 1148 (1175)
Q Consensus 1105 ~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~ 1148 (1175)
.|...|..||+.||.||.++ +++..++.+|+.|..+|...++.
T Consensus 3 ~l~~~v~~qg~~vR~lk~~~-a~~~~~~~a~~~L~~~k~~l~~~ 45 (51)
T cd00935 3 PLRAAVKEQGDLVRKLKEEG-APDVDIKKAVAELKARKKLLEDK 45 (51)
T ss_pred HHHHHHHHhhHHHHhhcccc-CcHHHHHHHHHHHHHHHHHhhhH
Confidence 47789999999999999987 79999999999999999988654
No 237
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=96.52 E-value=0.026 Score=65.14 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=43.2
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
++|.++. -|||.+||||.. +++ .+.++++ .|+++.+..+ |.|+.-.- ..++ +..+.+...+..+|.
T Consensus 31 ~~v~~G~-~PTG~lHLG~~~-~~~---~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~-~~i~~~~~~~~~~~~ 96 (329)
T PRK08560 31 PKAYIGF-EPSGKIHLGHLL-TMN---KLADLQK-AGFKVTVLLA-DWHAYLND------KGDL-EEIRKVAEYNKKVFE 96 (329)
T ss_pred CEEEEcc-CCCCcchhhhhH-HHH---HHHHHHH-CCCeEEEEEc-cchhhcCC------CCCH-HHHHHHHHHHHHHHH
Confidence 3444443 588999999965 333 3566655 4887655443 33432110 0233 344555566778888
Q ss_pred hccccccc
Q psy7266 363 WFEIDFDY 370 (1175)
Q Consensus 363 ~lgi~~D~ 370 (1175)
.+|++.+.
T Consensus 97 A~G~dp~k 104 (329)
T PRK08560 97 ALGLDPDK 104 (329)
T ss_pred HcCCChhh
Confidence 99988763
No 238
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.29 E-value=0.0094 Score=52.55 Aligned_cols=61 Identities=8% Similarity=-0.090 Sum_probs=49.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSC 62 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~ 62 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... .+++..++|++ ..||..|.+-....
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v-~i~~~~iGg~~~~~ 69 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQI-FFNEKLVGGLTDLK 69 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEE-EECCEEEeCHHHHH
Confidence 579999999999999999999999999988775442 14577899999 47778777655544
No 239
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.24 E-value=0.0074 Score=53.43 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=47.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cC-CCCcccEEEeCCCcEEeCHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LL-LSKTVPVLELDDGSQLFSAN 59 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~-P~g~vP~L~~~dG~~l~eS~ 59 (1175)
|+||+.+.||+|++++..+...|++|+.+.++-.... ++ +...+|+++.++|..+.++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 5799999999999999999999999988766544311 33 77899999878898887643
No 240
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.23 E-value=0.031 Score=52.71 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhhhchhh-----hhhhhc------CCCCchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHH
Q psy7266 70 TKNESAINQWLEWESVELFPS-----VLSFFD------NPKVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 70 ~~~~a~v~~wl~~~~~~l~p~-----~~~~~~------~g~~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~ 136 (1175)
..+|+..++...|..+.+.+. ....+. ........+.+++...+..|. ++||+|+ +||||..++.+
T Consensus 2 ~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~m 80 (117)
T PF14834_consen 2 RQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLALM 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHHH
Confidence 456666666656555555431 111111 112345677888888998888 8999996 99999999999
Q ss_pred HHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 137 L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.++...+ ..--+.+..|.++.-++|+|++-+..
T Consensus 81 l~Rl~~~g-----d~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 81 LNRLVTYG-----DPVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHTTT---------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 99975322 12237899999999999999997753
No 241
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.07 E-value=0.02 Score=50.27 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHhcCCCcE-EEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLD-VELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e-~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
.+|.|..+...+++.+.+.. +..+...+..++|.|++|+|...+|..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 67899999999999999932 33344445568899999999765899999999999998
No 242
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.01 E-value=0.017 Score=50.76 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=43.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQL 55 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l 55 (1175)
|+||+.+.||+|.+++-+|...|++|+.+.++-.... ..+...||+++.+|+..+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~ 60 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSW 60 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEE
Confidence 6899999999999999999999999999888754311 235568999975554333
No 243
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.99 E-value=0.017 Score=49.92 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=51.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
++||+.+.||+|++++.+|...+++|+.+.++.... .+++..++|++ ..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~-~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQI-FINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEE-EECCEEEecHHHHHHh
Confidence 479999999999999999999999998777765431 14577899999 5788999999887754
No 244
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.79 E-value=0.022 Score=50.21 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=50.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCC-cccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSK-TVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g-~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++..... ..... .+|++ ..+|..+.+...+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v-~i~g~~igg~~~~~~~ 71 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI-FIGDVHIGGCDDLYAL 71 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEE-EECCEEEeChHHHHHH
Confidence 5799999999999999999999999999888764311 12333 89999 5788889998888775
No 245
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.75 E-value=0.022 Score=49.67 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=48.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEE--eCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQL--FSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l--~eS~aI~~YL 65 (1175)
++||+.+.||+|.+++.++...|++|..+.++-... ..++...+|+|.. +|..+ +++.+|-++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-CCEEEeeCCHHHHHHHh
Confidence 579999999999999999999999888776654332 1357789999975 57777 5666665554
No 246
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.59 E-value=0.033 Score=48.39 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=45.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFS 57 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~e 57 (1175)
|++|+.+.||+|.+++.++...|++|..+.++.... .++|.+.+|+|+ .+|..|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~-~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVV-IGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEE-ECCEEEec
Confidence 579999999999999999999999999888775431 246889999996 45666654
No 247
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.51 E-value=0.026 Score=50.94 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=43.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQL 55 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l 55 (1175)
++||+.+.||+|.+++-+|...|++|+.+.++-.... ..+..+||+++. +|..+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~~~ 61 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-GDLSW 61 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCEEE
Confidence 4799999999999999999999999999888754321 347789999964 44433
No 248
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.35 E-value=0.048 Score=48.73 Aligned_cols=64 Identities=9% Similarity=-0.074 Sum_probs=52.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
++||+.+.||+|.+++-+++..|++|+.+.++..... ......+|++ ..+|..+.+...+.++-
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i-~i~g~~igg~~~~~~~~ 70 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQI-FIGDVHVGGCDDLYALD 70 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEE-EECCEEEcChHHHHHHH
Confidence 5899999999999999999999999999988765421 2356789999 57888888877776654
No 249
>KOG1936|consensus
Probab=94.69 E-value=0.046 Score=62.39 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCCCC---CCCCCCCC
Q psy7266 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNNTK---PNHSSKNS 1167 (1175)
Q Consensus 1105 ~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~~~---~~~~~~~~ 1167 (1175)
.+...|..||+.+|.||+++ +++++++.+|+.+++++++. |......+.| |+|||||.
T Consensus 8 ~~~~~~~~~~~llr~l~~~~-a~~~~~~~~va~~~~~~~~~----~~~~~~~~~k~~lKtPKGTrD 68 (518)
T KOG1936|consen 8 TTRESISFQGILLRDLKSSC-ASPEQISEEVALILALKNGL----GRSGSIFKKKFSLKTPKGTRD 68 (518)
T ss_pred HHHHHHhhhHHHHhhhhhcc-CChhHhhHHHHHHHHHhccc----CCCCCCcCcceeecCCCCCCc
Confidence 46788999999999999998 89999999999999999998 4444433445 99999994
No 250
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.12 Score=46.56 Aligned_cols=57 Identities=11% Similarity=-0.032 Sum_probs=46.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--c------cCCCCcccEEEeCCCcEEeCH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--R------LLLSKTVPVLELDDGSQLFSA 58 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~------~~P~g~vP~L~~~dG~~l~eS 58 (1175)
+++|+.++||+|.++.-+|...|++|+.+.++.... . .++..+||++. .||..+...
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~-i~~~~igg~ 67 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF-IGGKHVGGC 67 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE-ECCEEEeCc
Confidence 478999999999999999999999999988877662 1 34788999995 666566543
No 251
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.09 Score=61.53 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=31.9
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCc
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFG 608 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~ 608 (1175)
+++.|.|+=..|..= .-++... +. .+...+++-+| ..+|.|||||.||.++.
T Consensus 183 lq~GG~DQ~~ni~~g-rdl~rr~--g~-~~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 183 LQLGGSDQWGNILAG-RDLIRRL--GQ-KKVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred hhcCChHHHHHHHHH-HHHHHHh--CC-CCeEEEEeccccCCCCCcccccCCCceEc
Confidence 788999985554331 1122222 23 34455555555 58999999999995543
No 252
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.85 E-value=0.059 Score=45.37 Aligned_cols=54 Identities=17% Similarity=0.027 Sum_probs=43.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQL 55 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l 55 (1175)
++||+.++||+|.+++-.|...|++|+.+.++..... .....++|++. .||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~-i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVF-IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE-ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEE-ECCEEC
Confidence 4799999999999999999999999999888876411 23667899995 577654
No 253
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.71 E-value=0.2 Score=47.06 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=51.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
+++|+.+.||+|.++.-+|...|++|+.+.++..... +....+||.+ +.+|..|.+...+....
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FVGGKLVGGLENVMALH 82 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EECCEEEcCHHHHHHHH
Confidence 4689999999999999999999999999888754321 2356789999 68888888877776654
No 254
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.53 E-value=0.23 Score=44.44 Aligned_cols=65 Identities=14% Similarity=0.012 Sum_probs=53.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++-++...+++|+...++..+.. +....++|++ ..+|..+.++..|..+.-
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EECCEEEcCHHHHHHHHH
Confidence 4689999999999999999999999998888865421 2345689999 578899999998888754
No 255
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.52 E-value=0.23 Score=45.13 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=51.3
Q ss_pred CEEEecCCCchHHHHHHHHHh-----cCCCcEEEEecCcc---cc---cC--CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEF-----STTKLDVELVDVAD---AR---LL--LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~-----~gi~~e~~~v~~~~---~~---~~--P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|+.+.||+|.+++-+|.. .|++|+.+.++... .+ .. +..+||++ ..||..+.+...|..++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i-fi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI-FVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE-EECCEEEcCHHHHHHHHH
Confidence 478999999999999999999 78999988777532 11 11 23589999 478999999999988864
No 256
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.70 E-value=0.29 Score=44.70 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcC-----CCcEEEEecCcc---cc---c-C-CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFST-----TKLDVELVDVAD---AR---L-L-LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~g-----i~~e~~~v~~~~---~~---~-~-P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|+.+.||+|.+++-+|...+ ++|+.+.++... .. . + ...+||++ ..||..|.++..|..|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i-fi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI-FVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE-EECCEEecCHHHHHHHHH
Confidence 47999999999999999999885 456665554321 11 1 1 23589999 578899999999998875
No 257
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=91.94 E-value=0.63 Score=41.73 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=52.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++-++...+++ |+...++..... .....++|++ ..+|..+.++..+.++..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v-~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI-FINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE-EECCEEEcCHHHHHHHHH
Confidence 4789999999999999999999998 888887764311 2345689999 578899999988887764
No 258
>PHA03050 glutaredoxin; Provisional
Probab=91.91 E-value=0.5 Score=45.17 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=48.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCC---CcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTT---KLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi---~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~ 63 (1175)
+++|+.+.||+|.+++-+|...|+ +|+.+.++-... .+....+||.+ +.+|..|.+...+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-fI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI-FFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE-EECCEEEeChHHHHH
Confidence 468999999999999999999999 788877774211 13456689999 578888888766655
No 259
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=91.78 E-value=2.4 Score=41.03 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCCCCC------CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 658 INRALSFIEKNYGSTIPEI------SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 658 ~~r~~~~~~~~~~~~~p~~------~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
..|+.+++.+.-....... ..++.++.++..+..+...+..+++.++++..+..+++++..+|.|++.++-
T Consensus 5 ~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~I 81 (119)
T PF05746_consen 5 YARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVRI 81 (119)
T ss_dssp HHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4577777776533222111 1356678899999999999999999999999999999999999999998754
No 260
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=91.10 E-value=1.5 Score=42.15 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEE-EeCCCcEEeCHHHHHHHHcCCChH-HHHHHHHHHHHHhhhchh
Q psy7266 12 TLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVL-ELDDGSQLFSANQSCLYLSKFDTK-NESAINQWLEWESVELFP 89 (1175)
Q Consensus 12 ~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L-~~~dG~~l~eS~aI~~YL~p~~~~-~~a~v~~wl~~~~~~l~p 89 (1175)
-+++.+++.+..-.+++.. + +-..-|.| ...+|..|+|++||+|||+..... +.... +|+...+..
T Consensus 12 NLKlalA~~~~~~~lk~~v-~-------ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~es~e~----e~a~~~lE~ 79 (122)
T PF09635_consen 12 NLKLALALEYAQKDLKLEV-N-------EDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQESIEY----EFALSSLEN 79 (122)
T ss_dssp HHHHHHHHHH--STT--EE---------SS--S--EEE-S--S----HHHHHHHHTT--TTTTSHHH----HHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCeeee-C-------CccccceeeecCCceEEecccHHHHHHHhhcCCcchHHH----HHHHHHHHH
Confidence 4577788877655454322 2 11134677 456899999999999999843221 11111 122222222
Q ss_pred hhhhhhcCCCCchHHHHHHHH-HHHHHhcCCcccCCCCCccchhHHHHHH
Q psy7266 90 SVLSFFDNPKVLPDNLKTKLN-VLNEAISNSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 90 ~~~~~~~~g~~~~~~l~~~L~-~Le~~L~~~fLvG~~lTlADi~l~~~L~ 138 (1175)
.+.. .....+.+..+.. .|+++|. -....+|.++|+++..++
T Consensus 80 ~ly~----k~~~~e~v~~~~~k~l~~yl~---~~~e~lsAt~lIlFAn~Y 122 (122)
T PF09635_consen 80 VLYH----KSNKKEHVESAVNKSLDNYLT---SLKEPLSATQLILFANVY 122 (122)
T ss_dssp GGGS----SS--HHHHHHHHHHHHHHT-S------SS--HHHHHHHHHHH
T ss_pred HHhc----ccccHHHHHHHHHHhHHHhhh---hhcCCCCHHHheeeeecC
Confidence 2211 2234455555444 5555442 245789999999987653
No 261
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=90.18 E-value=0.51 Score=46.57 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
.+++..|..|+..|. .....| ++|+-||.+|+.|+.+..... ..=-|+|.+|+++|.+.-
T Consensus 62 ~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkg----i~~P~~V~~Y~~~~s~~t 122 (132)
T PF04399_consen 62 AELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKG----IQWPPKVRAYMDRMSKAT 122 (132)
T ss_dssp HHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTT----S---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccC----CcCCHHHHHHHHHHHHHc
Confidence 456788888888887 555555 899999999999999754332 122389999999998643
No 262
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.46 E-value=0.94 Score=53.02 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=53.1
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++++|.++. -|||.+||||... -..+.++++ .|+++.+.. .|.|..- . .+.++. .++++...+..
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~~----~~~~~~lQ~-~g~~~~i~I-aD~ha~~-----~-~~~~~e-~~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKMV----FDELKWHQE-FGANVYIPI-ADDEAYA-----A-RGLSWE-ETREWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHHH----HHHHHHHHh-cCCCEEEEe-cchHHHh-----c-CCCCHH-HHHHHHHHHHH
Confidence 4566666665 5779999999752 334555555 788865554 4444321 1 134544 34455555677
Q ss_pred HHhhccccccc---cCCCCCHHHHHHHH
Q psy7266 360 VYEWFEIDFDY---FGRTSTPQQTEIVQ 384 (1175)
Q Consensus 360 ~~~~lgi~~D~---~~~T~~~~~~~~v~ 384 (1175)
++..+|++.+. |..+.-+.|.+.++
T Consensus 130 ~~lA~G~Dp~k~~i~~qS~~~~~~~l~~ 157 (368)
T PRK12285 130 DLIALGFDPDKTEIYFQSENIKVYDLAF 157 (368)
T ss_pred HHHHhCCCccceEEEECCchHHHHHHHH
Confidence 88899999874 22344444444433
No 263
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=89.02 E-value=0.42 Score=53.67 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=42.0
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+..++..-- -++.-. ++..| ..+.+.+| ..+|.|||||.+|.++ ..+.+ +++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~~r-d~a~r~--~~~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d---sp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITLGR-DLIRKL--GYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD---SPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHHHH-HHHHHh--CCCCc-EEEeeccccCCCCCcccCCCCCccc-ccCCC---CHHHHHHHHHc
Confidence 7889999986654421 111112 23333 33456666 6899999999999997 44433 46666666665
No 264
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=88.86 E-value=1.1 Score=41.88 Aligned_cols=58 Identities=9% Similarity=-0.098 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
+.||+|.+++-+|...|++|+.+.++-... .+....+||.+ +.||..|.+...+....
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v-fi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL-YVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEE-EECCEEEeChHHHHHHH
Confidence 789999999999999999999877753321 13455689999 58888888877766543
No 265
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=88.17 E-value=0.84 Score=44.72 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL 166 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~ 166 (1175)
..+++..|..|+..|. ... ++..+|+-||.+|+.|+.+..... ..=-++|.+|+++|++.
T Consensus 62 i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkg----i~~P~~V~~Y~~~~s~~ 122 (128)
T cd03199 62 IAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKG----LVFPPKVKAYLERMSAL 122 (128)
T ss_pred HHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcC----CCCCHHHHHHHHHHHHH
Confidence 3567888888888886 444 456899999999999999754332 12237899999999865
No 266
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.08 E-value=1.4 Score=40.57 Aligned_cols=57 Identities=9% Similarity=-0.110 Sum_probs=45.2
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
+.||+|.+++-+|...|++|+.+.++..... .....++|++ +.||..|.+...+..+
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi~g~~iGG~~~l~~l 83 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YVNGELVGGCDIVKEM 83 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EECCEEEeCHHHHHHH
Confidence 6899999999999999999999887644311 3355689999 5788888887777664
No 267
>PLN02734 glycyl-tRNA synthetase
Probab=87.78 E-value=0.46 Score=59.11 Aligned_cols=45 Identities=40% Similarity=0.540 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHH
Q psy7266 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAM 1077 (1175)
Q Consensus 1033 ~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~ 1077 (1175)
...|...|++||+.||.||.+++.+.+++.+|..|..+|.++.+.
T Consensus 9 ~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 53 (684)
T PLN02734 9 LAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSAL 53 (684)
T ss_pred HHHHHHHHHHhHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhhh
Confidence 567889999999999999999999999999999999998887655
No 268
>PLN02486 aminoacyl-tRNA ligase
Probab=87.27 E-value=2 Score=50.51 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=47.2
Q ss_pred CCcEEEEccCCCCCC-CCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNN-VPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG-~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
+++++|.++. -||| .+||||+.. ...+..+++..|. .+++.-+|. +..+.. +.+. +.++++.....
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv~----~~~~~~lQ~~~~~-~~~I~iaD~-----e~~~~~-~~~~-e~i~~~~~en~ 137 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLIP----FMFTKYLQDAFKV-PLVIQLTDD-----EKFLWK-NLSV-EESQRLARENA 137 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHHH----HHHHHHHHHhCCC-eEEEEecCH-----HHHhhc-CCCH-HHHHHHHHHHH
Confidence 4567777765 6898 599999774 3344444444455 444445565 233333 4554 44455555566
Q ss_pred HHHhhccccccc
Q psy7266 359 EVYEWFEIDFDY 370 (1175)
Q Consensus 359 ~~~~~lgi~~D~ 370 (1175)
.++..+|++++.
T Consensus 138 ~~iiA~G~dp~k 149 (383)
T PLN02486 138 KDIIACGFDVER 149 (383)
T ss_pred HHHHHhCCCCcc
Confidence 778889988763
No 269
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=86.97 E-value=0.48 Score=54.01 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=33.7
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcc----cCeEEEeecee-ecCCC-cccccCCC-ccCchhh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYT----KVNHIMATEYL-NYEDG-KFSKSRGT-GVFGNNA 611 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~----~p~~i~~~g~l-~~~G~-KMSKS~GN-~v~~~d~ 611 (1175)
+.++|.|+..++..-- -+.... +.. .|..++.. ++ ..+|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~r-d~a~k~--~~~~~~~~p~~l~~~-~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELAR-DLARKF--NYKEIFPKPAGLTSP-LLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHHH-HHHHHH--THHSTSSS-EEEEET-CBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHHH-HHHhhh--cccccccCchheeec-cccccCCccccCccCCccEEEEecc
Confidence 7899999986544321 111112 223 45455444 55 58898 99999999 8877764
No 270
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=86.76 E-value=1.2 Score=57.93 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHH---HHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCC
Q psy7266 379 QTEIVQHLFDRV---HKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQC 455 (1175)
Q Consensus 379 ~~~~v~~~f~~L---~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~ 455 (1175)
..+.++++.... .+.+-++.-+.....||.|++.... ..||.||..-.--..|..||..+.+.+.....|.+|
T Consensus 640 ~qR~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 640 AQRDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcccCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 344555665433 3344444556667899999987543 379999975433348999999765443335589999
Q ss_pred CCccEEeecccccccchhHHHHHHH
Q psy7266 456 SQAPTVKSSTQLFLELPKIEDKLQS 480 (1175)
Q Consensus 456 ~~~~~~~~~~qwfl~l~~~~~~l~~ 480 (1175)
|.++..... .=|++..+-...++
T Consensus 716 Gtplv~~~~--~~i~~~~~~~~A~~ 738 (1337)
T PRK14714 716 DVELTPYQR--RTINVKEEYRSALE 738 (1337)
T ss_pred CCcccccce--EEecHHHHHHHHHH
Confidence 988774322 23565554333333
No 271
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=85.32 E-value=1.5 Score=44.51 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCcccccccCCcchHHHHHHHHcC
Q psy7266 311 FSRFCRLVNRNTLYVSGTDEYGTATETKALEEG 343 (1175)
Q Consensus 311 ~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g 343 (1175)
++||+|+.||+|.+..+.++..+ ...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i--l~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI--LELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH--HHHhhhCC
Confidence 58999999999999997755443 34555554
No 272
>PLN02734 glycyl-tRNA synthetase
Probab=82.71 E-value=1.5 Score=54.78 Aligned_cols=46 Identities=39% Similarity=0.455 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhc
Q psy7266 1103 VKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149 (1175)
Q Consensus 1103 ~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~ 1149 (1175)
...|...|+.||+.||.||.++ +++..++.+|+.|..+|.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~r~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 54 (684)
T PLN02734 9 LAEKQAAVTAQGNAVRALKASK-ADKAEIDAAIEKLKALKLEKSALE 54 (684)
T ss_pred HHHHHHHHHHhHHHHhhhhhcc-CchHHHHHHHHHHHHHHHhhhhhh
Confidence 4568899999999999999987 899999999999999998877653
No 273
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=80.82 E-value=4 Score=41.31 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=50.1
Q ss_pred CEEEecC------CCchHHHHHHHHHhcCCCcEEEEecCcccc------cC----CCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNR------NNVQTLKLLITAEFSTTKLDVELVDVADAR------LL----LSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~----P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
+.||+.+ .+|++.+++-+|...+++|+.+.|+..... +. ...++|.+ +.+|..|.+...+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV-FI~G~~IGG~del~~L 80 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRV-FVDGRYLGGAEEVLRL 80 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE-EECCEEEecHHHHHHH
Confidence 4689888 899999999999999999999888765421 11 23689999 5888988887777664
Q ss_pred H
Q psy7266 65 L 65 (1175)
Q Consensus 65 L 65 (1175)
-
T Consensus 81 ~ 81 (147)
T cd03031 81 N 81 (147)
T ss_pred H
Confidence 3
No 274
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=80.79 E-value=1.5 Score=51.53 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=38.3
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.+||||. ++..--+..++ ..|++|.+..+ |-|..-. ...|.++.++ +.....+..+|..+|++.+.
T Consensus 74 ~PTG~lHLG~g---~i~~~~~~~lq-~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 74 EPSGRMHIAQG---ILKAINVNKLT-KAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCcccccch---HhHhHHHHHHH-hCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHHHHHhCCCccc
Confidence 48999999992 22122333443 44888766644 2222110 0122334333 44555567778889988764
No 275
>PRK04023 DNA polymerase II large subunit; Validated
Probab=79.95 E-value=2 Score=54.67 Aligned_cols=78 Identities=19% Similarity=0.481 Sum_probs=49.7
Q ss_pred cCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccch
Q psy7266 393 AGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELP 472 (1175)
Q Consensus 393 ~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~ 472 (1175)
+|.+. -.....+|+.|++.. +.-.||.||.....-..|..||....+ ..|.+||..+... ...=|++.
T Consensus 617 ~g~~e-VEVg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~~~--s~~~i~l~ 684 (1121)
T PRK04023 617 KGTIE-VEIGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIEVEE-----DECEKCGREPTPY--SKRKIDLK 684 (1121)
T ss_pred CCcee-ecccCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCcCCC-----CcCCCCCCCCCcc--ceEEecHH
Confidence 45543 333446899998874 345799999876666789999886543 4599999877633 23335655
Q ss_pred hHHHHHHHHH
Q psy7266 473 KIEDKLQSWV 482 (1175)
Q Consensus 473 ~~~~~l~~~~ 482 (1175)
.+-....+.+
T Consensus 685 ~~~~~A~~~l 694 (1121)
T PRK04023 685 ELYDRALENL 694 (1121)
T ss_pred HHHHHHHHHh
Confidence 5444443333
No 276
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=78.98 E-value=1.7 Score=50.21 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=39.4
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.+||||..+.+. -.+++...|. + +++=.|.|..-. ...++. ..+++......++..+|++.+.
T Consensus 10 ~PTG~~HLGn~l~~~~----~~~~lQ~~~~-~-~i~IaD~ha~~~------~~~~~~-~i~~~~~~~~~~~lA~G~dp~k 76 (333)
T PRK12282 10 RPTGKLHLGHYVGSLK----NRVALQNEHE-Q-FVLIADQQALTD------NAKNPE-KIRRNILEVALDYLAVGIDPAK 76 (333)
T ss_pred CCCCcchHHHHHHHHH----HHHHHHhCCC-E-EEEEccchhHhC------CCCCHH-HHHHHHHHHHHHHHHhCcChhH
Confidence 3689999999987544 1213333454 4 455567764321 123444 3444555566778889998873
No 277
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.73 E-value=1.4 Score=51.67 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=34.6
Q ss_pred EEEeeccccchhHhHHHHHHHHh--CCCcccCeEEEeecee-ecCCCcccccC-CCccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAA--GDQYTKVNHIMATEYL-NYEDGKFSKSR-GTGVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~--~~~~~~p~~i~~~g~l-~~~G~KMSKS~-GN~v~~~d 610 (1175)
+..+|.|+.+++.+-- -+.... .+++..|..++. -++ .++|.|||||. +|.|+..|
T Consensus 206 lvPvG~DQ~~h~~ltR-diA~r~n~~~gf~~P~~l~~-~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 206 LVPVGIDQDPHIRLTR-DIAERLHGGYGFIKPSSTYH-KFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred EEEeccchHHHHHHHH-HHHHHHhhhcCCCCchhHhh-hcccCCCCCcCCCCCCCCeeeccC
Confidence 5678999987654421 111111 113556665553 455 67889999998 67887765
No 278
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=78.12 E-value=2.7 Score=40.33 Aligned_cols=32 Identities=6% Similarity=-0.173 Sum_probs=29.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
|+||+.+.||+|++++-.|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 68999999999999999999999999987664
No 279
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.78 E-value=3.2 Score=39.32 Aligned_cols=32 Identities=16% Similarity=-0.043 Sum_probs=29.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
|+||+.+.||+|.+++-.|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 68999999999999999999999999987764
No 280
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=77.69 E-value=4.5 Score=41.04 Aligned_cols=97 Identities=24% Similarity=0.327 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCccccc-ccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh--hccccccccCCCCCHHHHHHHHHHH
Q psy7266 311 FSRFCRLVNRNTLYVS-GTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE--WFEIDFDYFGRTSTPQQTEIVQHLF 387 (1175)
Q Consensus 311 ~aR~~r~~G~~v~~~~-G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~--~lgi~~D~~~~T~~~~~~~~v~~~f 387 (1175)
+||++|+.||+|.|.. ..|+ .+...+..+|- --+++. .++++ .+|+.-= +..+.+ ..+.+.++.
T Consensus 18 LARwLRllGydt~~~~~~~d~---~i~~i~~~e~r--IllTRD-----r~L~~r~k~g~~~i-~i~~~s--~~~Ql~e~~ 84 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDD---EIILIAKKEGR--ILLTRD-----RELYKRAKLGIKAI-LIRSDS--IEEQLAEFL 84 (165)
T ss_pred HHHHHHHcCCceeeeccCCcH---HHHHHHhcCCe--EEEecc-----HHHHHHhhccCceE-EEeCCC--HHHHHHHHH
Confidence 6899999999999996 4443 33334443331 001111 12222 3444321 223332 566666666
Q ss_pred HHHHHcCCEEeceEEEeeeCCCCccccc---ceecccCC
Q psy7266 388 DRVHKAGFTSSASVEQLHCAQCDRFLAD---RFVEGVCP 423 (1175)
Q Consensus 388 ~~L~~~G~iy~~~~~~~~c~~~~~~l~d---~~V~g~cP 423 (1175)
.++-.++.+. -...-||.|+..|.. .+|.+..|
T Consensus 85 ~~~~l~~~~~---~e~~RCp~CN~~L~~vs~eev~~~Vp 120 (165)
T COG1656 85 ARLGLKPRLF---PEFSRCPECNGELEKVSREEVKEKVP 120 (165)
T ss_pred HHhccchhcc---cccccCcccCCEeccCcHHHHhhccc
Confidence 6665555221 123458888877543 44544443
No 281
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=77.37 E-value=24 Score=34.20 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 679 ~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
++.++.++..+..+...+..++...+++..+..+.+++...|.|++.++-
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~v~V 84 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCRV 84 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHccCcc
Confidence 45677788888888888888899999999999999999999999997753
No 282
>PRK10824 glutaredoxin-4; Provisional
Probab=76.34 E-value=7.2 Score=37.68 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=46.4
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|.||||.++.-+|...|++|..+.++-... ......+||-+ +.+|..|-+...+.....
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQI-FI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQL-WVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeE-EECCEEEcChHHHHHHHH
Confidence 589999999999999999999877764321 13456799999 689999988877776654
No 283
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.81 E-value=1.7 Score=48.89 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=42.7
Q ss_pred CCCC-CCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCc--chHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccc
Q psy7266 291 YVNN-VPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEY--GTATETKALEEGLTPRQICDKYFAIHREVYEWFEID 367 (1175)
Q Consensus 291 y~nG-~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~--G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~ 367 (1175)
-||| .+||||... ...+.|+++. |+++.+..|=.|. |.|.-+..++.+.++.+ .+++...+..++..+|+.
T Consensus 8 ~PTg~~lHLG~~~~----~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPSLHLGHLVP----LMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCcccHHHHHH----HHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHcc
Confidence 4789 899999884 2356677665 9888776654332 22321122223344443 345555677788888875
No 284
>KOG1936|consensus
Probab=75.22 E-value=4.8 Score=46.63 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHH
Q psy7266 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 1074 (1175)
Q Consensus 1033 ~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~ 1074 (1175)
...+.+.|+-||+.||.||+++++...|+.+|..+++++++.
T Consensus 6 ~~~~~~~~~~~~~llr~l~~~~a~~~~~~~~va~~~~~~~~~ 47 (518)
T KOG1936|consen 6 LVTTRESISFQGILLRDLKSSCASPEQISEEVALILALKNGL 47 (518)
T ss_pred HHHHHHHHhhhHHHHhhhhhccCChhHhhHHHHHHHHHhccc
Confidence 345778899999999999999999999999999999999887
No 285
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=75.07 E-value=2.2 Score=49.45 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.+||||..+.+- -+.+++. +++|.+.. .|-|.+-. ..++. ..+.+...+..+|..+|++++.
T Consensus 9 ~PTG~lHLG~~~g~~~---~~~~lQ~--~~~~~~~I-aD~ha~t~-------~~~~~-~i~~~~~~~~~~~lA~GlDp~k 74 (333)
T PRK00927 9 QPTGKLHLGNYLGAIK---NWVELQD--EYECFFCI-ADLHALTV-------PQDPE-ELRENTRELAADYLACGIDPEK 74 (333)
T ss_pred CCCccchHHhHHHHHH---HHHHHHh--cCCeEEEE-ecHHHHhC-------CCCHH-HHHHHHHHHHHHHHeEccChhh
Confidence 3889999999987532 1334443 36766554 33332211 12333 3444555577788888988763
No 286
>PLN02886 aminoacyl-tRNA ligase
Probab=74.62 E-value=5.7 Score=46.66 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.+||||..+++- -+.+++. |+++ +++=.|-|-+- ...++.+ .+++...+..+|-.+|++.+.
T Consensus 54 qPSG~lHLGnylGai~---~~v~lQ~--~~~~-~~~IADlHAlt-------~~~~~~~-lr~~~~~~~a~~lA~GlDP~k 119 (389)
T PLN02886 54 QPTGSIHLGNYLGAIK---NWVALQE--TYDT-FFCVVDLHAIT-------LPHDPRE-LGKATRSTAAIYLACGIDPSK 119 (389)
T ss_pred CCCCccHHHHHHHHHH---HHHHHhc--cCCE-EEEEecHHHhh-------CCCCHHH-HHHHHHHHHHHHHHcCcCccc
Confidence 4789999999886432 2333333 7776 45555655442 1224443 344445567788899999874
Q ss_pred ---cCCCCCHHHHHHHHHHHHH
Q psy7266 371 ---FGRTSTPQQTEIVQHLFDR 389 (1175)
Q Consensus 371 ---~~~T~~~~~~~~v~~~f~~ 389 (1175)
|..+.-++|.+. .|++..
T Consensus 120 s~if~QS~v~e~~eL-~wil~~ 140 (389)
T PLN02886 120 ASVFVQSHVPAHAEL-MWLLSC 140 (389)
T ss_pred eEEEEeCCCchhHHH-HHHHHh
Confidence 345556666554 445444
No 287
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=73.10 E-value=5.7 Score=47.50 Aligned_cols=62 Identities=8% Similarity=-0.110 Sum_probs=47.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------cc--------CCCCcccEEEeCCCcEEeCHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RL--------LLSKTVPVLELDDGSQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~--------~P~g~vP~L~~~dG~~l~eS~aI~~ 63 (1175)
+++|+.+.||+|.++.-+|...|++|+.+.++-... .+ ....+||++. .||..|.+-..+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~if-i~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIF-VGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEE-ECCEEEeCchHHHH
Confidence 478999999999999999999999999988873331 11 2456899995 67777777655544
No 288
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=71.99 E-value=4.3 Score=32.21 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhccCCC-------CchhhHHHHHHHHHHHHhhh
Q psy7266 1108 AEIEKQAEVVRTLKASAGG-------DKSIFAADLAKLLSLKQQLS 1146 (1175)
Q Consensus 1108 ~~i~~qg~~vr~lk~~~~~-------~~~~~~~~v~~ll~lk~~~~ 1146 (1175)
.+|+.+++.||.|++-. . .+..+...|.+++.|+..|+
T Consensus 2 vqia~lt~~i~~L~~hl-~~~~kD~~~kr~L~~~v~kr~rLl~ylk 46 (46)
T cd00677 2 VQIALLTERIRNLKEHL-AKNKKDKHSKRGLDLLVSKRLRLLKYLK 46 (46)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999876 4 68889999999999998875
No 289
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.54 E-value=5.6 Score=38.40 Aligned_cols=32 Identities=9% Similarity=-0.097 Sum_probs=28.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
++||+.+.|+.|.+++-.|...|++|+++.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 47999999999999999999999999987664
No 290
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=69.32 E-value=6.4 Score=38.14 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=28.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
++||+.+.||+|++++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 68999999999999999999999999876654
No 291
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.76 E-value=13 Score=32.53 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=43.1
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------------------cCCCCcccEEEeCCCcEEeC
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------------------LLLSKTVPVLELDDGSQLFS 57 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------------------~~P~g~vP~L~~~dG~~l~e 57 (1175)
+||+...||-+....-.+.-.+++|+.+.+..+-.. .+..--+|+|..+||.++..
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 689999999999999999999999998776533211 12333489999999988873
No 292
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=68.48 E-value=6.1 Score=39.18 Aligned_cols=32 Identities=6% Similarity=-0.111 Sum_probs=29.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
++||+.+.|++|.+++-.|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 47999999999999999999999999987664
No 293
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.12 E-value=7.2 Score=37.05 Aligned_cols=32 Identities=9% Similarity=-0.142 Sum_probs=29.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
|++|+.+.|+.|++++-.|...|++|+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 68999999999999999999999999987654
No 294
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=67.26 E-value=1.7 Score=34.56 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHhhhhhhccccCCCC-------CcccchHHHHHHHHHHHHHH
Q psy7266 1038 AAVATQGNLVRQVKSSGV-------EKSEWQPHVDKLLSLKKQLE 1075 (1175)
Q Consensus 1038 ~~i~~qg~~vr~lK~~ka-------~k~~i~~~v~~Ll~lk~~~k 1075 (1175)
.+|+.++++||.|++... .+..+...|++++.|++-|+
T Consensus 2 vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk 46 (46)
T cd00677 2 VQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999877 68889999999999998774
No 295
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=66.14 E-value=6.9 Score=46.19 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCC-CCCCchhhhhhHHhHHHHHHHHHcCCCcccccc
Q psy7266 291 YVNN-VPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327 (1175)
Q Consensus 291 y~nG-~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G 327 (1175)
-||| .|||||... --.+.|+++ .|+++.++.|
T Consensus 38 dPTg~~lHlGh~v~----l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 38 DPTAPSLHLGHLVP----LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCCCCCccHHHHHH----HHHHHHHHH-CCCcEEEEEe
Confidence 4889 899999873 233555554 6999887764
No 296
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=65.98 E-value=7.1 Score=37.63 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=28.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
|+||+.+.|+.|++++-.|...|++|+++.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 58999999999999999999999999986653
No 297
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=64.92 E-value=8.6 Score=44.60 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=33.2
Q ss_pred EEEeeccccchhHhHHHHHHHHhCC----CcccCeEEEee--cee-ecCCC--cccccCC---CccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGD----QYTKVNHIMAT--EYL-NYEDG--KFSKSRG---TGVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~----~~~~p~~i~~~--g~l-~~~G~--KMSKS~G---N~v~~~d 610 (1175)
+..+|.|+.+++.+-- -+....+. -...|..++.. ..| .++|. |||||.+ |.|+..|
T Consensus 141 ivpvG~DQ~~h~elaR-dia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 141 LVPVGEDQKQHLELTR-DIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred EEeeccchHHHHHHHH-HHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 6788999987654421 11111111 12456555532 333 46776 9999999 7887765
No 298
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=63.17 E-value=8.3 Score=32.81 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCC---CcEEEEecCccc-c---cCCCCcccEEEeCCCcEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTT---KLDVELVDVADA-R---LLLSKTVPVLELDDGSQLF 56 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi---~~e~~~v~~~~~-~---~~P~g~vP~L~~~dG~~l~ 56 (1175)
+++|+.+.||+|..+.-.+..... .+++..+|..+. + ......+|++.. +|..++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i-~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI-NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE-CCEEEE
Confidence 468999999999998888775411 234444444331 1 123346999964 555554
No 299
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=62.96 E-value=15 Score=42.56 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=32.0
Q ss_pred EEEeeccccchhHhHHHHHHHHhC--CC---cccCeEEEe-ecee-ecCC-CcccccCCCccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAG--DQ---YTKVNHIMA-TEYL-NYED-GKFSKSRGTGVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~--~~---~~~p~~i~~-~g~l-~~~G-~KMSKS~GN~v~~~d 610 (1175)
+..+|.|+..+|.+-- -+....+ .+ ...|..++. +.+| .++| .|||||.+|.|+..|
T Consensus 145 ~vpvG~DQ~~h~~laR-diA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 145 LVPVGDDQLPMIEQTR-EIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred EEEeccccHHHHHHHH-HHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 6778999987665421 1111111 11 123443332 2333 3566 799999999987665
No 300
>KOG1752|consensus
Probab=62.84 E-value=30 Score=32.81 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=50.5
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.+|+-..||+|.++.-++.-.++++.++.+|-.... +.-..+||.+ +.+|..|-+...+..+-.
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v-FI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV-FIGGKFIGGASDLMALHK 89 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE-EECCEEEcCHHHHHHHHH
Confidence 467888999999999999999999888887765411 2234589999 689999998888887744
No 301
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=62.27 E-value=9.1 Score=45.15 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=32.3
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ec-CC-CcccccCCC-ccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NY-ED-GKFSKSRGT-GVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~-~G-~KMSKS~GN-~v~~~d 610 (1175)
+.++|.|+..|+.+- --+.... +......++.+.+| .+ +| .|||||.+| .|+..|
T Consensus 213 ivpvG~DQ~~~~~La-Rdia~~~--~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 213 ICQLGMDQRKVNMLA-REYCDKK--KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred EEEeCccHHHHHHHH-HHHHHHh--CCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 567899998877541 1122222 22222234455666 35 45 699999987 587665
No 302
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.83 E-value=10 Score=37.68 Aligned_cols=32 Identities=6% Similarity=-0.123 Sum_probs=29.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 47999999999999999999999999987664
No 303
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=60.50 E-value=6.2 Score=44.92 Aligned_cols=78 Identities=5% Similarity=-0.040 Sum_probs=42.3
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
+++.|.++. -|||.+||||+.. + ..+.++++ .|++|.++.|=.+. . .-... ....+..+.....+.+.
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~-~---~~~~~lq~-~g~~~~i~iaD~~a-~----~~~~~-~~~~~~~~~~~~~~~~~ 71 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVP-I---MKLIWLQK-AGFKVIILIADLHA-L----LGDPS-KGDERKIRSRAEYNIND 71 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHH-H---HHHHHHHH-TTSEEEEEEEHHHH-H----HTTTT-GSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEeE-CCCCcccchHHHH-H---HHHHHHHh-cCCccceEecchhh-c----ccCcc-cccHHHHHHHHHHHHHH
Confidence 344555544 5889999998883 2 34555555 79988877664331 1 00011 11223334444444555
Q ss_pred --Hhhccccccc
Q psy7266 361 --YEWFEIDFDY 370 (1175)
Q Consensus 361 --~~~lgi~~D~ 370 (1175)
+-.+|++.+.
T Consensus 72 ~~~la~g~d~~k 83 (292)
T PF00579_consen 72 KAILALGLDPEK 83 (292)
T ss_dssp HHHHHTTSHTTT
T ss_pred HHHHHhccCccc
Confidence 6688887754
No 304
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=60.12 E-value=4.1 Score=47.78 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=47.0
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHH-cCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRL-VNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~-~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D 369 (1175)
-|||.+||||..+++ ..|..+ .|+++ +++=.|-|-+-+ ...++. ..+++...+..+|..+|++++
T Consensus 10 qPSG~~HLGnylG~i------k~wv~lq~~~~~-~~~IADlHAlt~------~~~d~~-~ir~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 10 RPTGRLHLGHYHGVL------KNWVKLQHEYEC-FFFVADWHALTT------HYETPE-VIEKNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred CCCCcchHHHHHHHH------HHHHHHhcCCcE-EEEeecHHHHhC------CCCCHH-HHHHHHHHHHHHHHHcCCCcc
Confidence 489999999988633 244443 47765 455556553311 112443 344555567888999999986
Q ss_pred c---cCCCCCHHHHHH
Q psy7266 370 Y---FGRTSTPQQTEI 382 (1175)
Q Consensus 370 ~---~~~T~~~~~~~~ 382 (1175)
. |..+.-++|.+.
T Consensus 76 k~~if~QS~v~eh~eL 91 (398)
T PRK12283 76 QATLFIQSKVPEHAEL 91 (398)
T ss_pred ceEEEECCCchHHHHH
Confidence 4 345666666443
No 305
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=59.83 E-value=11 Score=37.47 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=29.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
++||+.+.|+.|++++-.|...|++|+++.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 47999999999999999999999999987764
No 306
>KOG1668|consensus
Probab=58.64 E-value=6.5 Score=42.16 Aligned_cols=56 Identities=18% Similarity=0.402 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHH
Q psy7266 106 KTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQ 168 (1175)
Q Consensus 106 ~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~ 168 (1175)
.+.+..|+.+|. .+|.-|+.++-+|+.++..+.-- .....++|..+|++++.++-.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e-------p~s~~~v~~~~w~~~l~a~~~ 66 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE-------PQSARLVNAERWYSKLEALLR 66 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC-------cchhhhhHHHHHHHHHHHHHH
Confidence 567899999999 99999999999999999888541 234678999999999876533
No 307
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=58.58 E-value=12 Score=36.91 Aligned_cols=32 Identities=6% Similarity=0.012 Sum_probs=29.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
|+||+++.|.-+++++-.|...|++|+++.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 58999999999999999999999999987653
No 308
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=58.05 E-value=18 Score=42.65 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=25.5
Q ss_pred ccCeEEEe-ecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 580 TKVNHIMA-TEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 580 ~~p~~i~~-~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+.|..++. +.+| .++|+|||||.+|.|...| ++|.+|=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 34444332 2344 4688999999999987655 23445544444
No 309
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=57.84 E-value=9.8 Score=44.89 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=30.1
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d 610 (1175)
++++|.|+.+ |...-.-+..-.+ .. ....+.+.++ ..+|.|||||.||.|+.++
T Consensus 180 i~~gG~DQ~~-ni~~g~dLar~~~--~~-~~~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 180 LQIGGSDQWG-NIRKGRDLIRRNL--PS-LGFGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred eeEecchhHH-HHHHHHHHHHHhc--CC-CceeeceeeecCCCCCCccCCCCCcccCCc
Confidence 7889999953 3332222222221 11 1112222233 4578999999999987764
No 310
>PLN02486 aminoacyl-tRNA ligase
Probab=57.71 E-value=6.6 Score=46.24 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=30.4
Q ss_pred EEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCC--CcccccCCC-ccCchh
Q psy7266 554 QFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYED--GKFSKSRGT-GVFGNN 610 (1175)
Q Consensus 554 ~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G--~KMSKS~GN-~v~~~d 610 (1175)
--+|.|+.+++.+-- -+.. .++...|- ++.|.++ .+.| +|||||.+| .|+..|
T Consensus 223 VPvG~DQd~~~~ltR-dia~--r~~~~kp~-~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 223 IPCAIDQDPYFRMTR-DVAP--RLGYYKPA-LIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eecccchHHHHHHHH-HHHH--HhCCCCcc-eeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 346889887654421 1111 22333443 3334455 4565 699999988 688766
No 311
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=57.51 E-value=14 Score=35.46 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=28.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELV 31 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v 31 (1175)
|+||+.+.|.-|++++-.|...|++|+++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 6899999999999999999999999998654
No 312
>PRK10026 arsenate reductase; Provisional
Probab=57.25 E-value=13 Score=37.36 Aligned_cols=32 Identities=13% Similarity=-0.094 Sum_probs=28.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD 32 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~ 32 (1175)
|+||+++.|.-|++++-.|...|++|+++.+-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 57999999999999999999999999987653
No 313
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=56.89 E-value=20 Score=31.67 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=34.3
Q ss_pred ecCCCchHHHH----HHHHHhcCCCcEEEEecCcc-cccCCCCcccEEEeCCCcEEe
Q psy7266 5 SNRNNVQTLKL----LITAEFSTTKLDVELVDVAD-ARLLLSKTVPVLELDDGSQLF 56 (1175)
Q Consensus 5 ~~~~sp~~~~v----~ial~~~gi~~e~~~v~~~~-~~~~P~g~vP~L~~~dG~~l~ 56 (1175)
+.+.||+|..+ .-++...|..+++..++-.+ ....-...+|++.. ||..++
T Consensus 6 ~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i-~G~~~~ 61 (76)
T TIGR00412 6 YGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV-DGELVI 61 (76)
T ss_pred ECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE-CCEEEE
Confidence 44899999888 44666778888888887222 11224457999987 665543
No 314
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=56.53 E-value=6.9 Score=49.21 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy7266 1133 ADLAKLLSLK 1142 (1175)
Q Consensus 1133 ~~v~~ll~lk 1142 (1175)
.+++.|+++-
T Consensus 609 ~aa~~Li~~A 618 (645)
T PRK14559 609 QGLNKLIDLA 618 (645)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 315
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=56.37 E-value=25 Score=29.89 Aligned_cols=26 Identities=8% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHH
Q psy7266 696 YYSVL-DKAKLRDGIRYILNISRYCNQ 721 (1175)
Q Consensus 696 ~~~~~-e~~~~~~a~~~i~~~~~~~n~ 721 (1175)
+.++| ++++.+.|+..|+++++..|.
T Consensus 2 F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 2 FIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 56788 799999999999999999998
No 316
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=55.64 E-value=16 Score=35.26 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=28.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELV 31 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v 31 (1175)
|+||+.+.|+-|++++-.|...|++|+++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 6899999999999999999999999997654
No 317
>PRK10853 putative reductase; Provisional
Probab=55.34 E-value=14 Score=36.00 Aligned_cols=31 Identities=10% Similarity=-0.158 Sum_probs=28.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELV 31 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v 31 (1175)
|+||+.+.|.-|++++-.|...|++|+++.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 4899999999999999999999999998654
No 318
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=55.06 E-value=1.2e+02 Score=38.32 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcC---CCCCCC-CCChhhHHHHHHHH
Q psy7266 615 GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYG---STIPEI-SPIHEDFLLLALIN 690 (1175)
Q Consensus 615 ~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~---~~~p~~-~~~~~d~~l~~~l~ 690 (1175)
||..|.++--|......--|+..+.+.+....+.+-...+..-++|+..++.+.-. +.+... -..+.++.+...+.
T Consensus 541 g~~~dii~AVL~~~~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~ 620 (691)
T COG0751 541 GYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQ 620 (691)
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHH
Confidence 56667776655543211123333333333222222223344556788888775432 222111 12567888999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 691 RELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 691 ~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
.+...+.+++..-++..++..+..+..-.+.|++..-
T Consensus 621 ~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~Vm 657 (691)
T COG0751 621 ALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVM 657 (691)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCce
Confidence 9999999999999999999999999888889998743
No 319
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=53.41 E-value=17 Score=35.20 Aligned_cols=31 Identities=16% Similarity=-0.052 Sum_probs=28.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELV 31 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v 31 (1175)
++||++|.|.-|++++-.+...|++|+++.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 5899999999999999999999999997654
No 320
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=53.34 E-value=1.3e+02 Score=38.50 Aligned_cols=75 Identities=9% Similarity=0.105 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhcC---CCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 653 NLGNFINRALSFIEKNYG---STIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 653 ~l~n~~~r~~~~~~~~~~---~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
++...+.|+..++.+.-. +.+... -..+.++.+...+..+...+...+..-++..++..+..+....+.|++..-
T Consensus 570 ~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 648 (682)
T PRK01233 570 ALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAFFDNVM 648 (682)
T ss_pred HHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHhCCCe
Confidence 445556688887765421 112111 125678888888888888888888888999999999999999999998743
No 321
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=52.12 E-value=13 Score=47.09 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=30.8
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecC-C-CcccccC-CCccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYE-D-GKFSKSR-GTGVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~-G-~KMSKS~-GN~v~~~d 610 (1175)
+..+|.|+.++|.+- --.+-.++..+...++.+.+| .++ | .|||||. +|.|+..|
T Consensus 178 ivpvG~DQ~qh~eLa---Rdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 178 ICQLGLDQRKVNMLA---REYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred EEEeCccHHHHHHHH---HHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 567899998876542 111111122211223334444 344 3 5999999 68997765
No 322
>PTZ00062 glutaredoxin; Provisional
Probab=51.87 E-value=34 Score=36.74 Aligned_cols=58 Identities=10% Similarity=-0.132 Sum_probs=44.1
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
|.||+|.++.-+|...|++|+...++-... ......++|.+ ..+|..|.+...+.+..
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV-fI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQL-YVNGELIGGHDIIKELY 189 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE-EECCEEEcChHHHHHHH
Confidence 689999999999999999999877764331 13455689999 58888888876666543
No 323
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.66 E-value=34 Score=32.66 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHhc---CCCcEEEEecCcccc------cC-CCCcccEEEeCCCc-------------EEeCHHHHHHHH
Q psy7266 9 NVQTLKLLITAEFS---TTKLDVELVDVADAR------LL-LSKTVPVLELDDGS-------------QLFSANQSCLYL 65 (1175)
Q Consensus 9 sp~~~~v~ial~~~---gi~~e~~~v~~~~~~------~~-P~g~vP~L~~~dG~-------------~l~eS~aI~~YL 65 (1175)
||.|..+.=+|... .-..+++.|++.... +- ....+|+|++.+|. .|.++..|++||
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~L 103 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYL 103 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHH
Confidence 55565555555442 234667777776521 11 34579999988776 799999999999
Q ss_pred c
Q psy7266 66 S 66 (1175)
Q Consensus 66 ~ 66 (1175)
.
T Consensus 104 a 104 (112)
T PF11287_consen 104 A 104 (112)
T ss_pred H
Confidence 6
No 324
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=48.72 E-value=60 Score=29.05 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=36.3
Q ss_pred CEEEecCCCchHHHHHHHHHhc--CCCcEEEEecCcccc-c--CCCCcccEEEeCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFS--TTKLDVELVDVADAR-L--LLSKTVPVLELDD 51 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~--gi~~e~~~v~~~~~~-~--~P~g~vP~L~~~d 51 (1175)
++||+-++|+.|..+.-.+... ..++++..+|..+.+ + .=.-.||||..++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcC
Confidence 4799999999999999888864 446778788877532 1 0123799997666
No 325
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=47.59 E-value=13 Score=46.82 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=6.9
Q ss_pred chHHHHHHHHHH
Q psy7266 1060 WQPHVDKLLSLK 1071 (1175)
Q Consensus 1060 i~~~v~~Ll~lk 1071 (1175)
++.+++.|+++-
T Consensus 607 l~~aa~~Li~~A 618 (645)
T PRK14559 607 LDQGLNKLIDLA 618 (645)
T ss_pred HHHHHHHHHHHH
Confidence 455666666553
No 326
>PF12773 DZR: Double zinc ribbon
Probab=47.23 E-value=17 Score=29.24 Aligned_cols=27 Identities=19% Similarity=0.548 Sum_probs=12.3
Q ss_pred CCcccccCCccccccccCCcccCCCCc
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQA 458 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~ 458 (1175)
..+|..||..+...+....+|..||..
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCC
Confidence 345555555444222233445555543
No 327
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=46.32 E-value=22 Score=36.29 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=26.8
Q ss_pred CcccccCCccccccc----cCCcccCCCCccEEeecccccccchhHHHHHHHHHHh
Q psy7266 433 DQCDGCGQLINAIEL----IQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSE 484 (1175)
Q Consensus 433 ~~c~~~g~~~~~~el----~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~ 484 (1175)
.+|.+||......|- ..-+..|.|.... |+..++...+......
T Consensus 29 ~~c~~c~~~f~~~e~~~~~~i~VIKRDG~~v~--------Fd~~KI~~AI~kA~~a 76 (154)
T PRK00464 29 RECLACGKRFTTFERVELVPLLVIKKDGRREP--------FDREKLRRGLRRACEK 76 (154)
T ss_pred eeccccCCcceEeEeccCcccEEEecCCcCCC--------cCHHHHHHHHHHHHHh
Confidence 689999987765442 1235566665544 6666666666555544
No 328
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.14 E-value=48 Score=30.96 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=42.4
Q ss_pred cCCCchHHHHHHHHHhcCCCcEEEEecCcc-c-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 6 NRNNVQTLKLLITAEFSTTKLDVELVDVAD-A-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 6 ~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+|.|+++.++.=+|.+.|+ +++..+|... . +.+...+.|-| ..+|+.+-+|..|.+...
T Consensus 27 ~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQL-yi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQL-YVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCCCCCcee-eECCEEeccHHHHHHHHH
Confidence 5789999999999999995 4444454432 1 24456689999 589999999876665543
No 329
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=46.10 E-value=64 Score=29.88 Aligned_cols=62 Identities=6% Similarity=-0.017 Sum_probs=43.4
Q ss_pred CEEEecCCCc------hHHHHHHHHHhcCCCcEEEEecCcccc------cC----CCCcccEEEeCCCcEEeCHHHHHH
Q psy7266 1 MKCLSNRNNV------QTLKLLITAEFSTTKLDVELVDVADAR------LL----LSKTVPVLELDDGSQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp------~~~~v~ial~~~gi~~e~~~v~~~~~~------~~----P~g~vP~L~~~dG~~l~eS~aI~~ 63 (1175)
++||....++ .++.+..+|.-.+|+|+.+.|+...+. .. +..++|-+ +.+|..|.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQI-Fi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQI-FNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEE-EECCEEeeCHHHHHH
Confidence 4678766554 466788899999999999988865422 11 34678988 578888877655443
No 330
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=45.62 E-value=17 Score=46.25 Aligned_cols=50 Identities=24% Similarity=0.610 Sum_probs=37.2
Q ss_pred eceEEEeeeCCCCcccccceecccCCCccc-----cCCCCCcccccCCccccccccCCcccCCCCc
Q psy7266 398 SASVEQLHCAQCDRFLADRFVEGVCPKCRY-----EDARGDQCDGCGQLINAIELIQPRCKQCSQA 458 (1175)
Q Consensus 398 ~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~-----~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~ 458 (1175)
++..+...|..|+... .||.|.. .+.....|-.||.... +--+|..||++
T Consensus 430 RGys~~l~C~~Cg~v~-------~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~----~p~~Cp~Cgs~ 484 (730)
T COG1198 430 RGYAPLLLCRDCGYIA-------ECPNCDSPLTLHKATGQLRCHYCGYQEP----IPQSCPECGSE 484 (730)
T ss_pred CCccceeecccCCCcc-------cCCCCCcceEEecCCCeeEeCCCCCCCC----CCCCCCCCCCC
Confidence 6777788999996542 5999985 3456678999998521 23479999988
No 331
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=44.70 E-value=1.9e+02 Score=37.03 Aligned_cols=76 Identities=7% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhcCC---CCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 652 NNLGNFINRALSFIEKNYGS---TIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~---~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
..+...+.|+..++.+.-+. .+... -..+.++.+...+..+...+...+..-++..++..+..+....|.|++..-
T Consensus 579 ~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 658 (691)
T TIGR00211 579 EALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSVM 658 (691)
T ss_pred HHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCCE
Confidence 34555567888887664321 12111 125678888888888777777778777999999999999999999998753
No 332
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=44.36 E-value=14 Score=24.76 Aligned_cols=19 Identities=37% Similarity=0.966 Sum_probs=8.4
Q ss_pred CCCccccC-CCCCcccccCC
Q psy7266 422 CPKCRYED-ARGDQCDGCGQ 440 (1175)
Q Consensus 422 cP~c~~~d-~~G~~c~~~g~ 440 (1175)
||.||.+- ....+|..||.
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CcccCCCCCCcCcchhhhCC
Confidence 45555432 22344555553
No 333
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=43.66 E-value=50 Score=34.61 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCEE
Q psy7266 380 TEIVQHLFDRVHKAGFTS 397 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy 397 (1175)
...|+.++.+|++.|++.
T Consensus 50 ~~~VRk~L~~L~e~gLv~ 67 (178)
T PRK06266 50 LNTVRKILYKLYDARLAD 67 (178)
T ss_pred HHHHHHHHHHHHHCCCeE
Confidence 356888899999999997
No 334
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=38.88 E-value=10 Score=47.93 Aligned_cols=35 Identities=26% Similarity=0.732 Sum_probs=0.0
Q ss_pred cCCCccccCCCCCcccccCCccccccccCCcccCCCCccE
Q psy7266 421 VCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPT 460 (1175)
Q Consensus 421 ~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~ 460 (1175)
.||.||....--..|..||..++ ...|.+||....
T Consensus 669 ~Cp~CG~~T~~~~~Cp~C~~~~~-----~~~C~~C~~~~~ 703 (900)
T PF03833_consen 669 RCPECGSHTEPVYVCPDCGIEVE-----EDECPKCGRETT 703 (900)
T ss_dssp ----------------------------------------
T ss_pred cCcccCCccccceeccccccccC-----ccccccccccCc
Confidence 35555543333344555554332 347888876644
No 335
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=38.53 E-value=56 Score=25.81 Aligned_cols=51 Identities=16% Similarity=-0.024 Sum_probs=34.2
Q ss_pred CEEEecCCCchHHHHHHHHHh---cCCCcEEEEecCcccc-------cCCCCcccEEEeCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEF---STTKLDVELVDVADAR-------LLLSKTVPVLELDD 51 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~---~gi~~e~~~v~~~~~~-------~~P~g~vP~L~~~d 51 (1175)
|.+|+...|++|.+++..+.. .+-.+.+..++..... ..+...+|+++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence 467888899999999998883 2334444444444321 34667899987554
No 336
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=38.46 E-value=32 Score=28.19 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=25.8
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q psy7266 696 YYSVL-DKAKLRDGIRYILNISRYCNQYMQ 724 (1175)
Q Consensus 696 ~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~ 724 (1175)
+.++| ++++.+.|+..++++++..|.|++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~ 31 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLL 31 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhh
Confidence 45677 799999999999999999999885
No 337
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=37.67 E-value=21 Score=24.32 Aligned_cols=21 Identities=43% Similarity=0.895 Sum_probs=12.4
Q ss_pred eCCCCcccccce--ecccCCCcc
Q psy7266 406 CAQCDRFLADRF--VEGVCPKCR 426 (1175)
Q Consensus 406 c~~~~~~l~d~~--V~g~cP~c~ 426 (1175)
|.+|+..|+.++ |.-.||.||
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 556666666654 444566665
No 338
>PLN02886 aminoacyl-tRNA ligase
Probab=37.15 E-value=36 Score=40.19 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=12.2
Q ss_pred CC-CcccccCC---CccCchh
Q psy7266 594 ED-GKFSKSRG---TGVFGNN 610 (1175)
Q Consensus 594 ~G-~KMSKS~G---N~v~~~d 610 (1175)
+| .|||||.. |.|+..|
T Consensus 247 ~g~~KMSKS~p~~~s~I~L~D 267 (389)
T PLN02886 247 DGTSKMSKSAPSDQSRINLLD 267 (389)
T ss_pred CCCCcCCCCCCCCCCeEEecC
Confidence 44 59999995 5776554
No 339
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.16 E-value=48 Score=40.92 Aligned_cols=51 Identities=27% Similarity=0.657 Sum_probs=34.2
Q ss_pred eceEEEeeeCCCCcccccceecccCCCcccc-----CCCCCcccccCCccccccccCCcccCCCCcc
Q psy7266 398 SASVEQLHCAQCDRFLADRFVEGVCPKCRYE-----DARGDQCDGCGQLINAIELIQPRCKQCSQAP 459 (1175)
Q Consensus 398 ~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~-----d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~ 459 (1175)
++..+..+|..|+..+ .||.|+.. ...-..|-.||.... ....|..||+.-
T Consensus 208 rGya~~~~C~~Cg~~~-------~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~----~~~~Cp~C~s~~ 263 (505)
T TIGR00595 208 RGYSKNLLCRSCGYIL-------CCPNCDVSLTYHKKEGKLRCHYCGYQEP----IPKTCPQCGSED 263 (505)
T ss_pred CcCCCeeEhhhCcCcc-------CCCCCCCceEEecCCCeEEcCCCcCcCC----CCCCCCCCCCCe
Confidence 5666778899997653 58999742 233457888986432 134799998754
No 340
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=36.01 E-value=1.1e+02 Score=39.03 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=37.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHH-HHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRF-CRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~-~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
.|.++. -|||.|||||. ++ . .+..+ .+..|++|.+..+ |-|..- ....|.+..++. .....+..+|.
T Consensus 34 rv~sGi-~PTG~lHLGng---~~-~-aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~-~~~~~~~~~~l 101 (682)
T PTZ00348 34 RCYDGF-EPSGRMHIAQG---IF-K-AVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIR-IVGRYLIEVWK 101 (682)
T ss_pred EEEEee-CCCCcCeeccH---HH-H-HHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHH-HHHHHHHHHHH
Confidence 344443 58999999993 22 2 11222 2245888654432 222211 011122222222 22345667899
Q ss_pred hccccccc
Q psy7266 363 WFEIDFDY 370 (1175)
Q Consensus 363 ~lgi~~D~ 370 (1175)
.+|++.+.
T Consensus 102 A~GlDpeK 109 (682)
T PTZ00348 102 AAGMDMDK 109 (682)
T ss_pred HcCCCccc
Confidence 99999884
No 341
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=35.18 E-value=3e+02 Score=36.61 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=63.9
Q ss_pred cCCCchhHHHHHHhcCCCCCCc---cccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CChhhHHHHHHH
Q psy7266 614 TGLPADIFRFYLLYVRPENQDT---SFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEIS-PIHEDFLLLALI 689 (1175)
Q Consensus 614 ~~~gaDalR~~ll~~~~~~~D~---~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~-~~~~d~~l~~~l 689 (1175)
.||..|.++--|.. .. .|. .-..+.+.+..+.+-...+...+.|+..++.+.....+.... ..+.++.+...+
T Consensus 856 ~G~~~dvI~AVl~~-~~--~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~ 932 (1000)
T PRK14908 856 LGFDKDEIAAVLPD-AC--KNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQAL 932 (1000)
T ss_pred cCCCHHHHHHHHcc-CC--CCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHH
Confidence 57888888876642 11 121 111122222222223345566677888887764322221111 256677777777
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
..+...+... .-++..++..+..+....+.|++..-
T Consensus 933 ~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 933 DAFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCCE
Confidence 6665555444 45899999999999999999998743
No 342
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.31 E-value=23 Score=24.57 Aligned_cols=20 Identities=30% Similarity=0.997 Sum_probs=9.5
Q ss_pred eCCCCcccccceecccCCCccc
Q psy7266 406 CAQCDRFLADRFVEGVCPKCRY 427 (1175)
Q Consensus 406 c~~~~~~l~d~~V~g~cP~c~~ 427 (1175)
||.|+..++... ..||.|||
T Consensus 3 CP~C~~~V~~~~--~~Cp~CG~ 22 (26)
T PF10571_consen 3 CPECGAEVPESA--KFCPHCGY 22 (26)
T ss_pred CCCCcCCchhhc--CcCCCCCC
Confidence 555555544322 23555555
No 343
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.12 E-value=1.8e+02 Score=37.45 Aligned_cols=51 Identities=25% Similarity=0.593 Sum_probs=34.1
Q ss_pred eceEEEeeeCCCCcccccceecccCCCcccc-----CCCCCcccccCCccccccccCCcccCCCCcc
Q psy7266 398 SASVEQLHCAQCDRFLADRFVEGVCPKCRYE-----DARGDQCDGCGQLINAIELIQPRCKQCSQAP 459 (1175)
Q Consensus 398 ~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~-----d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~ 459 (1175)
++..+..+|..|+..+ .||.|+.. ......|-.||.... ....|..||+..
T Consensus 376 rGy~~~~~C~~Cg~~~-------~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~----~~~~Cp~Cg~~~ 431 (679)
T PRK05580 376 RGYAPFLLCRDCGWVA-------ECPHCDASLTLHRFQRRLRCHHCGYQEP----IPKACPECGSTD 431 (679)
T ss_pred CCCCCceEhhhCcCcc-------CCCCCCCceeEECCCCeEECCCCcCCCC----CCCCCCCCcCCe
Confidence 5666778899997653 58888742 233457888986532 124799998754
No 344
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=34.05 E-value=41 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhc-C---CcccCCC-CCccchhHHHHHHHH
Q psy7266 105 LKTKLNVLNEAIS-N---SFLIENS-TTVADICIWTCVYPL 140 (1175)
Q Consensus 105 l~~~L~~Le~~L~-~---~fLvG~~-lTlADi~l~~~L~~~ 140 (1175)
-.+++..|++.|+ . .|+.|+. +|-.||.+++.|..+
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 3677899999999 7 9999988 999999999999975
No 345
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=33.93 E-value=26 Score=46.43 Aligned_cols=35 Identities=26% Similarity=0.707 Sum_probs=26.7
Q ss_pred cCCCccccCCCCCcccccCCccccccccCCcccCCCCccE
Q psy7266 421 VCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPT 460 (1175)
Q Consensus 421 ~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~ 460 (1175)
.||.||.+... ..|..||....+ ..+|..||..+.
T Consensus 669 kCPkCG~~t~~-~fCP~CGs~te~----vy~CPsCGaev~ 703 (1337)
T PRK14714 669 RCPSCGTETYE-NRCPDCGTHTEP----VYVCPDCGAEVP 703 (1337)
T ss_pred ECCCCCCcccc-ccCcccCCcCCC----ceeCccCCCccC
Confidence 49999986544 599999987543 248999998654
No 346
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=33.25 E-value=29 Score=35.84 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHcCCEEeceEEEeeeCCCCcccc
Q psy7266 391 HKAGFTSSASVEQLHCAQCDRFLA 414 (1175)
Q Consensus 391 ~~~G~iy~~~~~~~~c~~~~~~l~ 414 (1175)
.+++-.+.+..+.+||..|+-+|.
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred CcccceeecccceeehhhCCCccc
Confidence 345677888899999999987764
No 347
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=33.14 E-value=18 Score=26.84 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=6.6
Q ss_pred eeCCCCcccccceecc
Q psy7266 405 HCAQCDRFLADRFVEG 420 (1175)
Q Consensus 405 ~c~~~~~~l~d~~V~g 420 (1175)
||+.|+..|.-+-.+|
T Consensus 2 fC~~CG~~l~~~ip~g 17 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEG 17 (34)
T ss_dssp B-TTT--B-EEE--TT
T ss_pred ccccccChhhhhcCCC
Confidence 7888877776655543
No 348
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.08 E-value=26 Score=24.14 Aligned_cols=7 Identities=57% Similarity=1.512 Sum_probs=3.5
Q ss_pred CCCcccc
Q psy7266 422 CPKCRYE 428 (1175)
Q Consensus 422 cP~c~~~ 428 (1175)
||.||..
T Consensus 5 Cp~Cg~~ 11 (26)
T PF13248_consen 5 CPNCGAE 11 (26)
T ss_pred CcccCCc
Confidence 5555543
No 349
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.65 E-value=1.7e+02 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=32.3
Q ss_pred HHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHH-cCCEEece
Q psy7266 357 HREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHK-AGFTSSAS 400 (1175)
Q Consensus 357 ~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~-~G~iy~~~ 400 (1175)
+..-++.||.++.|-. .|+-....+.+-.++..+++ ||+.|.+.
T Consensus 22 hl~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~ 68 (119)
T COG3171 22 HLGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGS 68 (119)
T ss_pred cHHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCC
Confidence 4456788898888754 36666777888888887776 59988764
No 350
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=31.11 E-value=12 Score=40.22 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccE
Q psy7266 381 EIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPT 460 (1175)
Q Consensus 381 ~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~ 460 (1175)
+.....-.++..++-+-+..+.+.-|..|++.+.-+|+.+.||.|+.--..---|-.|++.+....| .+.|.+||..+.
T Consensus 116 ktl~~m~ek~~~ql~La~~iRavd~~dva~~v~~~hfLpd~~gn~r~f~rq~~rc~~c~~k~rr~pl-~g~c~kcg~~~~ 194 (253)
T COG1933 116 KQLGDMEEKVKRQLDLARRIRAVDEHDVAERVLNSHFIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL-DGKCPICGGKIV 194 (253)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHhHHHHHHhhccCCCcchhhhhhhhhhheeehHhhhhhhcCCCc-cccccccCCeEE
Confidence 3344445555566666667777888999999999999999998887533333457777776654443 478999999776
Q ss_pred Eeecc
Q psy7266 461 VKSST 465 (1175)
Q Consensus 461 ~~~~~ 465 (1175)
....+
T Consensus 195 ltv~~ 199 (253)
T COG1933 195 LTVSK 199 (253)
T ss_pred EEEec
Confidence 54443
No 351
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=30.98 E-value=1.2e+02 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=34.2
Q ss_pred CEEEecCCCchHHHHHHHHHh----cCCCcEEEEecCcccc----cCCCCcccEEEeCCCc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEF----STTKLDVELVDVADAR----LLLSKTVPVLELDDGS 53 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~----~gi~~e~~~v~~~~~~----~~P~g~vP~L~~~dG~ 53 (1175)
++||+.+.||+|..+.-.+.. .+..+.+..+|..+.. ......+|++.. +|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~-~g~ 62 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI-NGD 62 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE-CCE
Confidence 368999999999977776543 3444666677764421 123446999976 554
No 352
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.49 E-value=35 Score=43.47 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=0.0
Q ss_pred eceEEEeeeCCCCcccccceecccCCCccc-----cCCCCCcccccCCccccccccCCcccCCCCc
Q psy7266 398 SASVEQLHCAQCDRFLADRFVEGVCPKCRY-----EDARGDQCDGCGQLINAIELIQPRCKQCSQA 458 (1175)
Q Consensus 398 ~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~-----~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~ 458 (1175)
++..+...|..|+... .||.|+. ....-..|-.||. ......|..||+.
T Consensus 378 rGyap~l~C~~Cg~~~-------~C~~C~~~L~~h~~~~~l~Ch~CG~-----~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 378 RGYVPSLACARCRTPA-------RCRHCTGPLGLPSAGGTPRCRWCGR-----AAPDWRCPRCGSD 431 (665)
T ss_pred CCCCCeeEhhhCcCee-------ECCCCCCceeEecCCCeeECCCCcC-----CCcCccCCCCcCC
No 353
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=28.12 E-value=29 Score=34.09 Aligned_cols=21 Identities=43% Similarity=1.105 Sum_probs=13.1
Q ss_pred eeCCCCcccccceeccc--CCCccc
Q psy7266 405 HCAQCDRFLADRFVEGV--CPKCRY 427 (1175)
Q Consensus 405 ~c~~~~~~l~d~~V~g~--cP~c~~ 427 (1175)
.||.|+++|-. -.|+ ||.|++
T Consensus 30 hCp~Cg~PLF~--KdG~v~CPvC~~ 52 (131)
T COG1645 30 HCPKCGTPLFR--KDGEVFCPVCGY 52 (131)
T ss_pred hCcccCCccee--eCCeEECCCCCc
Confidence 57777777766 2343 666664
No 354
>PRK05978 hypothetical protein; Provisional
Probab=28.12 E-value=35 Score=34.44 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=17.2
Q ss_pred cccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEE
Q psy7266 419 EGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 419 ~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~ 461 (1175)
.|.||.||.- +++...--..++|..||...+.
T Consensus 33 ~grCP~CG~G-----------~LF~g~Lkv~~~C~~CG~~~~~ 64 (148)
T PRK05978 33 RGRCPACGEG-----------KLFRAFLKPVDHCAACGEDFTH 64 (148)
T ss_pred cCcCCCCCCC-----------cccccccccCCCccccCCcccc
Confidence 3678888852 2222222234567777765553
No 355
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=27.95 E-value=42 Score=26.13 Aligned_cols=21 Identities=38% Similarity=1.170 Sum_probs=9.5
Q ss_pred CCCcccc-----CCCCC-cccccCCcc
Q psy7266 422 CPKCRYE-----DARGD-QCDGCGQLI 442 (1175)
Q Consensus 422 cP~c~~~-----d~~G~-~c~~~g~~~ 442 (1175)
||.|+.. ..+|. .|..||..+
T Consensus 3 Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 3 CPNCGSKEIVFDPERGELVCPNCGLVL 29 (43)
T ss_dssp BTTTSSSEEEEETTTTEEEETTT-BBE
T ss_pred CcCCcCCceEEcCCCCeEECCCCCCEe
Confidence 5655532 23443 455555544
No 356
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=27.77 E-value=39 Score=42.30 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=29.2
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHhhcCC
Q psy7266 980 NSSSHKIGTPAPLFRKIEQAQVDEWKLKYGGQ 1011 (1175)
Q Consensus 980 ~~~~~~~g~~~~lf~ki~~~~~~~~~~~~~g~ 1011 (1175)
.++||+++.+.+||.+|+..++++++.+++|.
T Consensus 524 ~~~g~~i~~~~~lf~r~~~~~~~~~~~~~~~~ 555 (556)
T PRK12268 524 LLPGHPINKPEPLFKKIDDEQIEEELERLGGA 555 (556)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC
Confidence 45689999999999999999999999999985
No 357
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.13 E-value=46 Score=26.34 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=8.9
Q ss_pred CCcccCCCCccEEe
Q psy7266 449 QPRCKQCSQAPTVK 462 (1175)
Q Consensus 449 ~~~c~r~~~~~~~~ 462 (1175)
..+|..||+++++.
T Consensus 21 ~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 21 GVRCPYCGYRILFK 34 (46)
T ss_pred ceECCCCCCeEEEc
Confidence 45677777766653
No 358
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.66 E-value=41 Score=42.94 Aligned_cols=40 Identities=28% Similarity=0.635 Sum_probs=27.4
Q ss_pred EEeeeCCCCcccccceeccc--CCCccccCCCCCcccccCCc
Q psy7266 402 EQLHCAQCDRFLADRFVEGV--CPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 402 ~~~~c~~~~~~l~d~~V~g~--cP~c~~~d~~G~~c~~~g~~ 441 (1175)
.+.=||.|+..|+-+.-.+. |.+||+...--..|.+||..
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 34458888877776655443 88888775556678888864
No 359
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=24.86 E-value=44 Score=34.16 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.0
Q ss_pred ceEEEeeeCCCCccccccee
Q psy7266 399 ASVEQLHCAQCDRFLADRFV 418 (1175)
Q Consensus 399 ~~~~~~~c~~~~~~l~d~~V 418 (1175)
.+...|||+.|+..|-+.++
T Consensus 110 ~d~~~wyc~~c~~~~~e~~f 129 (159)
T TIGR03037 110 LDGFQWFCPQCGHKLHRAEV 129 (159)
T ss_pred CcceEEECCCCCCeEEEEEE
Confidence 45678999999988887665
No 360
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=23.82 E-value=98 Score=31.97 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=16.5
Q ss_pred EeeeCCCCcccccceecccCCCccc
Q psy7266 403 QLHCAQCDRFLADRFVEGVCPKCRY 427 (1175)
Q Consensus 403 ~~~c~~~~~~l~d~~V~g~cP~c~~ 427 (1175)
+|-|+.|+-...+ +-.+.||.||.
T Consensus 134 ~~vC~vCGy~~~g-e~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTHEG-EAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCcccC-CCCCcCCCCCC
Confidence 6778888766666 55566777764
No 361
>PF14369 zf-RING_3: zinc-finger
Probab=23.06 E-value=52 Score=24.61 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=9.2
Q ss_pred EeeeCCCCcccc
Q psy7266 403 QLHCAQCDRFLA 414 (1175)
Q Consensus 403 ~~~c~~~~~~l~ 414 (1175)
.+||-.|++++.
T Consensus 2 ~ywCh~C~~~V~ 13 (35)
T PF14369_consen 2 RYWCHQCNRFVR 13 (35)
T ss_pred CEeCccCCCEeE
Confidence 379999987765
No 362
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=23.02 E-value=1e+02 Score=28.99 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=33.4
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEE
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTS 397 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy 397 (1175)
+.-..|||..|..++|..++..+...+..+.|.+++.+|
T Consensus 74 ~~AR~LGI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~ 112 (113)
T COG4352 74 RKARTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVF 112 (113)
T ss_pred HHHHhhCcceehhhccCCHHHHHHHHHHHHHHHhcCccC
Confidence 345789999999999999999999999999998877654
No 363
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.35 E-value=53 Score=40.53 Aligned_cols=39 Identities=33% Similarity=0.714 Sum_probs=26.4
Q ss_pred EEeeeCCCCcccccceecc--cCCCccccCCCCCcccccCC
Q psy7266 402 EQLHCAQCDRFLADRFVEG--VCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 402 ~~~~c~~~~~~l~d~~V~g--~cP~c~~~d~~G~~c~~~g~ 440 (1175)
.+.-|+.|+..|.-+.-.+ .|..||+....-..|..||.
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 3445888887776543222 48888887777778888875
No 364
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=22.31 E-value=52 Score=26.53 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=7.3
Q ss_pred eeCCCCcccccc
Q psy7266 405 HCAQCDRFLADR 416 (1175)
Q Consensus 405 ~c~~~~~~l~d~ 416 (1175)
|||.|+..|.-.
T Consensus 2 FCp~Cg~~l~~~ 13 (52)
T smart00661 2 FCPKCGNMLIPK 13 (52)
T ss_pred CCCCCCCccccc
Confidence 677776665443
No 365
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.15 E-value=1e+02 Score=30.72 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHcCCEEec-------eEEEeeeCCCCcc
Q psy7266 378 QQTEIVQHLFDRVHKAGFTSSA-------SVEQLHCAQCDRF 412 (1175)
Q Consensus 378 ~~~~~v~~~f~~L~~~G~iy~~-------~~~~~~c~~~~~~ 412 (1175)
-+.+..+..|..+ .+|-+..+ ....++|..|+..
T Consensus 39 V~pe~L~fafe~l-~~gt~~ega~L~i~~~p~~~~C~~CG~~ 79 (135)
T PRK03824 39 VDKEIVEFALNEL-LKGTILEGAEIIFEEEEAVLKCRNCGNE 79 (135)
T ss_pred hhHHHHHHHHHHH-HcCCcccCCEEEEEecceEEECCCCCCE
Confidence 3455555666554 34555443 3355677777643
No 366
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=21.59 E-value=1.3e+02 Score=30.61 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q psy7266 690 NRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQ 724 (1175)
Q Consensus 690 ~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~ 724 (1175)
..+...+.++| ++++++.|+..|+++++.+|.+++
T Consensus 32 ~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 32 EPFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 34557888999 699999999999999999998875
No 367
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.43 E-value=1.1e+02 Score=29.54 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=24.5
Q ss_pred CcccCCCCccEEeecccccccchh-HHHHHHHHHH
Q psy7266 450 PRCKQCSQAPTVKSSTQLFLELPK-IEDKLQSWVS 483 (1175)
Q Consensus 450 ~~c~r~~~~~~~~~~~qwfl~l~~-~~~~l~~~~~ 483 (1175)
-+|..|++.++=.=+-.||..|+. -.+.+..++.
T Consensus 13 l~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~ 47 (113)
T PF09862_consen 13 LKCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIK 47 (113)
T ss_pred EEcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHH
Confidence 468899999998888899999984 3333444443
No 368
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=43 Score=32.26 Aligned_cols=9 Identities=44% Similarity=1.280 Sum_probs=6.9
Q ss_pred cccCCCccc
Q psy7266 419 EGVCPKCRY 427 (1175)
Q Consensus 419 ~g~cP~c~~ 427 (1175)
.|.||.||.
T Consensus 21 ~grCP~CGe 29 (126)
T COG5349 21 RGRCPRCGE 29 (126)
T ss_pred cCCCCCCCC
Confidence 467999984
No 369
>KOG2145|consensus
Probab=21.04 E-value=1.1e+02 Score=34.16 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccc-cccCC
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYV-SGTDE 330 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~-~G~D~ 330 (1175)
.+++||.+++-=--++.+|+||+.- . ++..|+..- ++|-.+ -=||+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliP-F----iftKwlQe~-F~vpLVIqlTDD 128 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIP-F----IFTKWLQDV-FDVPLVIQLTDD 128 (397)
T ss_pred cCCceEEEeCCCCCccccccccchh-H----HHHHHHHHH-hCCceEEEeccc
Confidence 4677888887655789999999984 3 356676543 455433 34443
No 370
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=21.02 E-value=92 Score=38.93 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhc
Q psy7266 104 NLKTKLNVLNEAIS 117 (1175)
Q Consensus 104 ~l~~~L~~Le~~L~ 117 (1175)
++...++.+.-.|.
T Consensus 133 ei~q~~q~f~~~lN 146 (555)
T cd01675 133 EIKQAMQGFIYNLN 146 (555)
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555544444
No 371
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.89 E-value=58 Score=41.82 Aligned_cols=39 Identities=26% Similarity=0.664 Sum_probs=25.5
Q ss_pred EeeeCCCCcccccceecc--cCCCccccCCCCCcccccCCc
Q psy7266 403 QLHCAQCDRFLADRFVEG--VCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 403 ~~~c~~~~~~l~d~~V~g--~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
+.-|+.|+..|.-+.-.+ .|..||+.......|..||..
T Consensus 390 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 390 VAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 445888877765443222 478888776667778888753
No 372
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=20.86 E-value=58 Score=33.90 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.8
Q ss_pred ceEEEeeeCCCCccccccee
Q psy7266 399 ASVEQLHCAQCDRFLADRFV 418 (1175)
Q Consensus 399 ~~~~~~~c~~~~~~l~d~~V 418 (1175)
.+...|||..|+..|-+.++
T Consensus 116 ~d~~~wyc~~c~~~~~e~~f 135 (177)
T PRK13264 116 LDGFQWYCDECNHKVHEVEV 135 (177)
T ss_pred ccceEEECCCCCCeEEEEEE
Confidence 35678999999988887665
No 373
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=20.48 E-value=90 Score=30.11 Aligned_cols=12 Identities=0% Similarity=-0.014 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHH
Q psy7266 375 STPQQTEIVQHL 386 (1175)
Q Consensus 375 ~~~~~~~~v~~~ 386 (1175)
-+|+..++..++
T Consensus 39 v~pe~L~f~f~~ 50 (113)
T PRK12380 39 VEESAVRFSFEI 50 (113)
T ss_pred cCHHHHHHHHHH
Confidence 355555555544
No 374
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=20.10 E-value=97 Score=29.98 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHH
Q psy7266 375 STPQQTEIVQHL 386 (1175)
Q Consensus 375 ~~~~~~~~v~~~ 386 (1175)
-+|+..++..++
T Consensus 39 V~p~~L~faf~~ 50 (115)
T TIGR00100 39 VNPSQLQFAFEV 50 (115)
T ss_pred cCHHHHHHHHHH
Confidence 355555555444
Done!