RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7266
(1175 letters)
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 714 bits (1844), Expect = 0.0
Identities = 306/635 (48%), Positives = 406/635 (63%), Gaps = 38/635 (5%)
Query: 268 RTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327
++ P LP P + NILITSALPYVNNVPHLGNIIGCVLSADVF+R+CRL N +Y+ G
Sbjct: 4 EGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICG 63
Query: 328 TDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLF 387
TDEYGTATETKALEE TP++ICDKY AIH+EVY+WF+I FD FGRTSTPQQTEI Q +F
Sbjct: 64 TDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIF 123
Query: 388 DRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPK--CRYEDARGDQCDGCGQLINAI 445
++ + + S +++QL+C C +FLADR VEG CP C Y+ ARGDQC+ CG+L+N
Sbjct: 124 KKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPT 183
Query: 446 ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ--WSSNARVICKAWLKD 503
ELI P+CK C P ++ + LFLELP ++DKL +++ETS WS NA AWL+D
Sbjct: 184 ELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRD 243
Query: 504 GLKPRCITRDLKWGIPVPLPGFENK--YSLSSSP-SLVQFLPTATPQ--------SKITL 552
GLKPRCITRDLKWG+PVPL +++K Y +P V TP+ + L
Sbjct: 244 GLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVEL 303
Query: 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAK 612
YQFM KDNVPFH++MFP+TL+ G+ +T + I TEYLNYE GKFSKS+G GVFGN+AK
Sbjct: 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAK 363
Query: 613 DTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEK----N 668
DT +P +++R+YLL RPE DT F+W DL K NSELLNNLGNFINR LSFI K
Sbjct: 364 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAG 423
Query: 669 YGSTIPEISPIHEDFLLLAL---INRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQT 725
YGS IP+ L L + + + Y ++K KL+ G++ ++IS N Y+Q
Sbjct: 424 YGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQE 483
Query: 726 QQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLS 785
Q W L+K E K + V+ + YLL+ LL P+MPS + + QL SLS
Sbjct: 484 SQFWKLYK---EDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPESLSLS 540
Query: 786 SSPSLV-------QFLPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKK 838
V + +P GHKIGTP PLF++++ +V+ ++ K+ G Q ++ +
Sbjct: 541 DEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAA-----RA 595
Query: 839 QAEITFSSVEEL-EAAVATQGNLVRQVKSSGVEKS 872
+A ++L + A++ G + K+ G KS
Sbjct: 596 EAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKS 630
Score = 44.0 bits (104), Expect = 5e-04
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 982 SSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEEL-EAAV 1040
+ HKIGTP PLF++++ +V+ ++ K+ G Q ++ + +A ++L + A+
Sbjct: 558 AGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAA-----RAEAAEAKKLAKQLKKKAL 612
Query: 1041 ATQGNLVRQVKSSGVEKS 1058
+ G + K+ G KS
Sbjct: 613 SDGGKKKQGKKAGGGGKS 630
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 617 bits (1593), Expect = 0.0
Identities = 221/562 (39%), Positives = 318/562 (56%), Gaps = 28/562 (4%)
Query: 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE 341
ILITSA PY N HLG++ G L ADVF+R+ RL L+VSG+DE+GT E A +
Sbjct: 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK 63
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
EG+TP+++ DKY H+E ++ I +D F RT++P E+VQ F ++++ G+ ++
Sbjct: 64 EGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTI 123
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461
EQ +C RFL DR+VEG CP C YE ARGDQCD CG L++ +LI PR K P
Sbjct: 124 EQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEF 183
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521
+ + FL+LP ++L++W+ E+S W N WLK+GLKPR ITRDL WGIPVP
Sbjct: 184 RETEHFFLDLPAFAERLRAWI-ESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242
Query: 522 LPGFENKY----------SLSSSPSLVQFLPTATP--------QSKITLYQFMAKDNVPF 563
PGFE K +S+S T P + Y F+ KDN+PF
Sbjct: 243 WPGFEGKVFYVWFDAVIGYISASKEW--AERTGDPEAWKEFWLDPETKSYYFIGKDNIPF 300
Query: 564 HSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRF 623
HSI++PA L+ +G+ + I+++EYL E GKFSKSRG G++ ++A + P D R+
Sbjct: 301 HSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRY 359
Query: 624 YLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDF 683
YL PEN DT F+W++ + NSEL + GN +NR LSFIEK +G +P ED
Sbjct: 360 YLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDR 419
Query: 684 LLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAS 743
L+A +L+ + + + I+ ++R N+Y+ + PW L K E RA+
Sbjct: 420 ELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRE---RAA 476
Query: 744 TVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTP 803
TVL + LL++LL P++P +A I LG + + ++ L GH I P
Sbjct: 477 TVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLG---GENIEKLTWESLKPLLPGHPINKP 533
Query: 804 APLFRKIEQAQVDEWKLKYGGQ 825
PLF+KI+ Q++E + GG
Sbjct: 534 EPLFKKIDDEQIEEELERLGGA 555
Score = 39.8 bits (94), Expect = 0.008
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 984 HKIGTPAPLFRKIEQAQVDEWKLKYGGQ 1011
H I P PLF+KI+ Q++E + GG
Sbjct: 528 HPINKPEPLFKKIDDEQIEEELERLGGA 555
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 576 bits (1488), Expect = 0.0
Identities = 204/566 (36%), Positives = 290/566 (51%), Gaps = 28/566 (4%)
Query: 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATET 337
IL+T+ALPY N PHLG++ L+ADV++R+ RL +++GTDE+GT E
Sbjct: 2 KMMKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 338 KALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTS 397
KA +EG+TP+++ DK +E+++ I FD F RT++P+ E+VQ F ++++ G
Sbjct: 61 KAEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIY 120
Query: 398 SASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQ 457
E L+C C+RFL DR+VEG CPKC EDARGDQC+ CG+ ++ ELI P C
Sbjct: 121 LREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 458 APTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLK 515
P V+ F L K +DKL W D W +N R +LK+GLK ITR DL
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLD 240
Query: 516 WGIPVPLPGFENKY------SLSSSPSLVQFLPTATPQSK---------ITLYQFMAKDN 560
WGIPV PG K +L S + L L F+ KD
Sbjct: 241 WGIPV--PGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDI 298
Query: 561 VPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADI 620
+ FH++ +PA L+AAG I A +L E K SKSRG V + + D
Sbjct: 299 IRFHAVYWPAMLMAAG--LPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDA 355
Query: 621 FRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIH 680
R+YL PE D FSW+D + N++L N LGN NR L FI K + +P
Sbjct: 356 LRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPD 415
Query: 681 EDFL--LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQ 738
+ LLAL L A ++K + R + I+ ++ N+Y+ Q PW L K +
Sbjct: 416 LEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKED--K 473
Query: 739 KSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGH 798
+ R +TVL + ++ +L++LL P+MP TA I QLG + + Q L GH
Sbjct: 474 RERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWL-GARQPLLPGH 532
Query: 799 KIGTPAPLFRKIEQAQVDEWKLKYGG 824
K+G P PLF +IE+ ++E
Sbjct: 533 KLGPPEPLFPRIEEEAIEELIEALKE 558
Score = 32.2 bits (74), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 984 HKIGTPAPLFRKIEQAQVDEWKLKYGG 1010
HK+G P PLF +IE+ ++E
Sbjct: 532 HKLGPPEPLFPRIEEEAIEELIEALKE 558
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 568 bits (1467), Expect = 0.0
Identities = 180/627 (28%), Positives = 285/627 (45%), Gaps = 55/627 (8%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
IL+T ALPY N HLG+++ + AD++ R+ R+ L+V D +GT KA +E
Sbjct: 4 ILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE 62
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
G+TP ++ +Y A H+ + F I FD +G T + + E+ Q ++ ++ + G+ ++E
Sbjct: 63 GITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIE 122
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
QL+ + FL DRFV+G CPKC ED GD C+ CG + ELI P+ P +K
Sbjct: 123 QLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLK 182
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW-GIPVP 521
S F +LP+ E+ L+ W+ S + N K WL++GL+ I+RD + G +
Sbjct: 183 ESEHFFFKLPRFEEFLKEWI-TRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEI- 240
Query: 522 LPGFENKY----------SLSSSPSLVQ------FLPTATPQSKITLYQFMAKDNVPFHS 565
PG K +SS+ +L + S LY F+ KD + FH+
Sbjct: 241 -PGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHT 299
Query: 566 IMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYL 625
+ +PA L AG Y ++ A +L E K SKSRGT ++ D L D R+YL
Sbjct: 300 LFWPAMLEGAG--YRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRYYL 356
Query: 626 LYVRPEN-QDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFL 684
PE D F+W+D + NSEL+ + NF +R FI K + +P+ E
Sbjct: 357 AAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPDALADPE--- 413
Query: 685 LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAST 744
LL + + R +R I+ ++ + N+Y+ +PW L K E R
Sbjct: 414 LLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGE---RLQA 470
Query: 745 VLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPA 804
V + + L++ L P +P A + L L + + P GH I
Sbjct: 471 VCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTWDDAQQP------LAGHPINKFK 524
Query: 805 PLFRKIEQAQVDEWKLKY------GGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQG 858
LF +IE Q++ ++ +E I+F +++ VA
Sbjct: 525 ILFTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVDLRVA--- 581
Query: 859 NLVRQVKSSGVEKSEWQPHVDKLLSLK 885
+ V++ VE + DKLL L
Sbjct: 582 ---KIVEAEKVEGA------DKLLKLT 599
Score = 45.1 bits (108), Expect = 2e-04
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 984 HKIGTPAPLFRKIEQAQVDEWKLKY------GGQQNKESSNNKKEKKQAEITFSSVEELE 1037
H I LF +IE Q++ ++ +E I+F +++
Sbjct: 518 HPINKFKILFTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVD 577
Query: 1038 AAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLK 1071
VA + V++ VE + DKLL L
Sbjct: 578 LRVA------KIVEAEKVEGA------DKLLKLT 599
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 496 bits (1280), Expect = e-164
Identities = 206/547 (37%), Positives = 284/547 (51%), Gaps = 35/547 (6%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
ILIT+ALPY N PHLG+ + ADV++R+ RL L+V GTDE+GT E KA +E
Sbjct: 1 ILITTALPYANGKPHLGHAY-TTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
GLTP+++ DKY ++ ++W I FD F RT+ + EIVQ +F ++ + G+ ++
Sbjct: 60 GLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIK 119
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
QL+C +C+ FL DR+VEG CPKC EDARGD C+ CG+ + ELI PRCK C P ++
Sbjct: 120 QLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELR 179
Query: 463 SSTQLFLELPKIEDKLQSWVSE--TSDQWSSNARVICKAWLKDGLKPRCITRDLK-WGIP 519
S F L E +L+ W+ + S +SN + + WLK GLK ITRDL WGIP
Sbjct: 180 DSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239
Query: 520 VPLPGFENKY------SLSSSPSLVQFLPTATP--------QSKITLYQFMAKDNVPFHS 565
V P NK +L S + L T L F+ KD V FH+
Sbjct: 240 V--PNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHT 297
Query: 566 IMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYL 625
I +PA L+ G + + YL E GK SKS G V ++ ADI R+YL
Sbjct: 298 IYWPAMLMGLG--LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYL 354
Query: 626 LYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHE-DFL 684
L RP +D FSW+D + N++L N LGN +NR L FI+K + +P E D
Sbjct: 355 LKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKK 414
Query: 685 LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAST 744
LL LIN L ++ + R +R I+ ++ N+Y+ +PW LFK SP K
Sbjct: 415 LLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLK----E 470
Query: 745 VLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPA 804
+L + + +LS+LL P MP + I L L GHK+
Sbjct: 471 LLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWDFKLK-------LLEGHKLNKAE 523
Query: 805 PLFRKIE 811
PLF KIE
Sbjct: 524 PLFSKIE 530
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 467 bits (1204), Expect = e-155
Identities = 158/396 (39%), Positives = 219/396 (55%), Gaps = 24/396 (6%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
LIT+ALPYVN PH+G++ + ADV++R+ RL + L+V+GTDE+GT E A +E
Sbjct: 1 FLITTALPYVNGPPHIGHLYT-TIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE 59
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
G+TP+++ D+Y +E+++ F I FD F RT++ + E+VQ F ++++ G E
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYE 119
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
+C +RFL DR+VEG CP C EDARGDQC+ CG+ + ELI PR P +K
Sbjct: 120 GWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELK 179
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522
F L K +DKL W+ E D+ SN + +WLK+GLK ITRDL WGIPV
Sbjct: 180 EEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGIPV-- 237
Query: 523 PGFENKY----------------SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSI 566
PG K LS +P + P ++I F+ KD + FH+I
Sbjct: 238 PGDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEI--VHFIGKDIIRFHAI 295
Query: 567 MFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626
+PA L+AAG + A +L E GK SKSRG V + D D R+YL
Sbjct: 296 YWPAMLMAAG--LPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR-YGVDALRYYLA 352
Query: 627 YVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662
PE +D FSW+D + NSEL N+LGN +NR L
Sbjct: 353 REAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 391 bits (1007), Expect = e-127
Identities = 135/371 (36%), Positives = 188/371 (50%), Gaps = 67/371 (18%)
Query: 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE 341
+LIT+ALPYVN VPHLG++ G VL ADVF+R+ RL + L+V+GTDE+GT E KA E
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE 59
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
EG+TP+++CDKY I +++++W I FDYF RT++P+ EIVQ F ++++ G+
Sbjct: 60 EGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEY 119
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461
E L+C C+RFL P
Sbjct: 120 EGLYCVSCERFL---------------------------------------------PEW 134
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDL-KWGIP 519
+ F L K +D+L W+ + D W NAR +WLK+GLK ITRDL WGIP
Sbjct: 135 REEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194
Query: 520 VPLPGFENK-----------YSLSSSPSLVQFLPTATPQSKIT--LYQFMAKDNVPFHSI 566
VPL K Y +S++ + + L F+ KD + FH+I
Sbjct: 195 VPL--DPGKVIYVWFDALIGY-ISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAI 251
Query: 567 MFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626
+PA L+ AG I+A YL E K SKSRG V ++ + AD R+YLL
Sbjct: 252 YWPAMLLGAG--LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERY-GADALRYYLL 308
Query: 627 YVRPENQDTSF 637
RPE +D+ F
Sbjct: 309 RERPEGKDSDF 319
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 277 bits (711), Expect = 4e-82
Identities = 150/557 (26%), Positives = 228/557 (40%), Gaps = 74/557 (13%)
Query: 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL 340
IT+ + Y N PH+G+ L+ADV +RF RL + +++GTDE+G + KA
Sbjct: 1 KKFYITTPIYYPNGKPHIGHA-YTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE 59
Query: 341 EEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS 400
E G++P+++ D+ A + ++E I +D F RT+ P+ E VQ +F R+ G
Sbjct: 60 EAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGK 119
Query: 401 VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQP--RCKQCSQA 458
E +C +C+ F + ELI+ RC
Sbjct: 120 YEGWYCVRCEEFYTES-----------------------------ELIEDGYRCPPTGAP 150
Query: 459 PTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAW-------LKDGLKPRCIT 511
F L K +DKL D + + +K GLK I+
Sbjct: 151 VEWVEEESYFFRLSKYQDKLLELYEANPD------FIQPASRRNEVISFVKSGLKDLSIS 204
Query: 512 R-DLKWGIPVP-------------LPGFEN--KYSLSSSPSLVQFLPTATPQSKITLYQF 555
R + WGIPVP L + Y F
Sbjct: 205 RTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADV-----HL 259
Query: 556 MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTG 615
+ KD + FH++ +PA L+AAG + A +L + K SKS G + + D
Sbjct: 260 IGKDILRFHAVYWPAFLMAAG--LPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDE- 316
Query: 616 LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE 675
D R++LL P QD FS + + N++L N+LGN R LS I KN+ +PE
Sbjct: 317 YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPE 376
Query: 676 ISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKG 734
D LL L + +D + IL + R N+Y+ Q PW L K
Sbjct: 377 PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAK- 435
Query: 735 SPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFL 794
R +TVL L +V +++LL P MP A+ I QLG + ++ S + L
Sbjct: 436 --TDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAALSWGR-L 492
Query: 795 PTGHKIGTPAPLFRKIE 811
G + P P+F ++E
Sbjct: 493 APGTTLPKPEPIFPRLE 509
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 258 bits (662), Expect = 6e-74
Identities = 177/644 (27%), Positives = 288/644 (44%), Gaps = 110/644 (17%)
Query: 280 ENNILITSALPYVNNVPHLGN----IIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335
+ IT+ + Y N PH+G+ I AD +R+ RL + +++GTDE+G
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIA-----ADALARYKRLQGYDVFFLTGTDEHGQKI 57
Query: 336 ETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGF 395
+ A + G TP++ D+ A +E+++ +I +D F RT+ + ++VQ +F+++++ G
Sbjct: 58 QQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGD 117
Query: 396 TSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQC 455
E +C C+ F + QL++ +C C
Sbjct: 118 IYKGEYEGWYCVSCETFFTES-----------------------QLVD-----GGKCPDC 149
Query: 456 SQAPTVKSSTQLFLELPKIEDKLQSWVSETSD--QWSSNARVICKAWLKDGLKPRCITRD 513
+ + F + K +D+L + E D Q S + ++K GL+ I+R
Sbjct: 150 GREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRT 209
Query: 514 -LKWGIPVPLPGFENKY-----------------SLSSSPSLVQ-FLPTATPQSKITLYQ 554
WGIPVP F+ K+ S L + F P
Sbjct: 210 SFDWGIPVP---FDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPAD--------VH 258
Query: 555 FMAKDNVPFHSIMFPATLVAAG-DQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKD 613
+ KD + FH+I +P L+A G KV A + +DGK SKS+G N D
Sbjct: 259 LVGKDILRFHAIYWPIMLMALGLPLPKKVF---AHGWWLMKDGKMSKSKG------NVVD 309
Query: 614 T-------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIE 666
GL D R+YLL P D FS + L + NS+L N+LGN +NR ++ I
Sbjct: 310 PEELVDRYGL--DALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMIN 367
Query: 667 KNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQT 725
K + IP + E D L+AL L Y ++++ + + + + N+Y+
Sbjct: 368 KYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDE 427
Query: 726 QQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLS 785
PWVL K +K R +TV+ L + +++LLSP+MP T+ I QLG L+ L+
Sbjct: 428 TAPWVLAK-DEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLG---LEEELT 483
Query: 786 SSPSLVQF--LPTGHKIGTPAPLFRKIE-QAQVDEWKLKYGGQQNKESSNNKKEKKQAEI 842
S SL+++ LP G K+ PLF +I+ + ++ K + G KE +K+ ++ EI
Sbjct: 484 SWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Query: 843 TFSSVEELEAAVATQGNLVRQVKS-SGVEKSEWQPHVDKLLSLK 885
T +++E VA V VEKS DKLL L+
Sbjct: 544 TIDDFDKVELRVAE-------VLEAEKVEKS------DKLLKLQ 574
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 167 bits (425), Expect = 2e-43
Identities = 150/563 (26%), Positives = 248/563 (44%), Gaps = 51/563 (9%)
Query: 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEG 343
++T+ L YVN PH+G+ ++AD +RF RL+ + ++++GTDE+G T A G
Sbjct: 72 VLTTPLYYVNAPPHMGSAY-TTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG 130
Query: 344 LTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQ 403
P + CD +R +++ +I +D F RT+ P+ IV+ + RV G A E
Sbjct: 131 RNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190
Query: 404 LHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV-K 462
L+C C+ Y+D + EL++ C Q P V +
Sbjct: 191 LYCVNCEE---------------YKDEK--------------ELLENNCCPVHQMPCVAR 221
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARV-ICKAWLKDGLKPRCITRDL-KWGIPV 520
F L K + L+ +++ + R+ ++W+K GL+ I+R L WGIPV
Sbjct: 222 KEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPV 281
Query: 521 PLPGFENKY----------SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPA 570
P + Y S + + Q L TA + KD + FH++ +PA
Sbjct: 282 PDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPA 341
Query: 571 TLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP 630
L++AG + K+ + +L + K KS G + P D R++ L
Sbjct: 342 MLMSAGLELPKM--VFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGP-DAVRYFFLREVE 398
Query: 631 ENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIH-EDFLLLALI 689
D +S N+ L N +GN +NR L ++KN ST+ E S + E L +
Sbjct: 399 FGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTV 458
Query: 690 NRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGIL 749
+ + + + L +L I N YM + PW LFK A+ L I+
Sbjct: 459 EKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVII 518
Query: 750 CQVSYLLSLLLSPYMPSTASTIASQLGASHLKY-SLSSSPSLVQFLPTGHKIGTPAPLFR 808
+V ++++ LSP P + I SQLG S ++ S++ S + L G + +P+F
Sbjct: 519 LEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFA 578
Query: 809 KIE---QAQVDEWKLKYGGQQNK 828
+IE + + DE K K G + K
Sbjct: 579 RIELNPEKEEDEKKPKVGKKTGK 601
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 141 bits (357), Expect = 5e-39
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 646 NNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAK 704
NSEL NNLGN +NR L+ K +G +PE + E D LL L +++ +
Sbjct: 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELE 60
Query: 705 LRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYM 764
R + I+ ++R N+Y+ PW L K E R +TVL +L ++ +L++LLSP+M
Sbjct: 61 FRKALEEIMELARAANKYIDETAPWKLAKE--EDPERLATVLYVLLELLRILAILLSPFM 118
Query: 765 PSTASTIASQL 775
P TA I QL
Sbjct: 119 PETAEKILDQL 129
>gnl|CDD|238475 cd00939, MetRS_RNA, MetRS_RNA binding domain. This short
RNA-binding domain is found at the C-terminus of MetRS
in several higher eukaryote aminoacyl-tRNA synthetases
(aaRSs). It is repeated in Drosophila MetRS. This domain
consists of a helix-turn-helix structure, which is
similar to other RNA-binding proteins. It is involved in
both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for
the formation of aaRSs into multienzyme complexes.
Length = 45
Score = 57.5 bits (139), Expect = 1e-10
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 850 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 892
LE VA QGN VR++K+S +KS WQP V+KLL LKKQL +
Sbjct: 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAE 43
Score = 57.5 bits (139), Expect = 1e-10
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078
LE VA QGN VR++K+S +KS WQP V+KLL LKKQL +
Sbjct: 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAE 43
Score = 51.3 bits (123), Expect = 1e-08
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
LE E+ +Q VR LKAS DKSV+ ++ KLL LK+QL+ G
Sbjct: 1 LEKEVAEQGNKVRKLKAS-KADKSVWQPEVNKLLDLKKQLALAEGK 45
Score = 50.2 bits (120), Expect = 4e-08
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
LE E+ +Q VR LKAS DKS++ ++ KLL LK+QL+ G
Sbjct: 1 LEKEVAEQGNKVRKLKAS-KADKSVWQPEVNKLLDLKKQLALAEG 44
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 64.2 bits (157), Expect = 1e-10
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 58/253 (22%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETK----ALEEGLT 345
P V H+G+ + + D+ +R+ R+ N L+ GTD G AT+ EG T
Sbjct: 10 PNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 346 PRQICDKYFAIHREVYEWFE----------------IDFDYFGRTSTPQQTEIVQHLFDR 389
+ + F + +EW E +D+ T P + VQ F R
Sbjct: 69 RHDLGREEFL--EKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVR 126
Query: 390 VHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQ 449
+++ G + + +R V CPK R + + C G + IE +
Sbjct: 127 LYEKGL-----IYR----------DNRLVN-WCPKLRTAISDIEVCSRSG---DVIEPL- 166
Query: 450 PRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWS-SNARVICKAWLKDGLKPR 508
Q F+++ + K V E ++ + WL++ ++
Sbjct: 167 -------------LKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLEN-IRDW 212
Query: 509 CITRDLKWGIPVP 521
CI+R L WG +P
Sbjct: 213 CISRQLWWGHRIP 225
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 62.8 bits (153), Expect = 3e-10
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 38/196 (19%)
Query: 461 VKSSTQLFLELPKIEDKLQSWVSETS---DQWSSNARVICKAWLKDGLKPRCITRDLKWG 517
V+ + Q F ++PK ++KL + + + R+ +AWL+ L I+R WG
Sbjct: 136 VRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKN--RM--EAWLESLLD-WAISRQRYWG 190
Query: 518 IPVPLPGFENKYSLSS-------SPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPA 570
P+P F+ + P ++ + P + + KD + + +
Sbjct: 191 TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP----ADWHLIGKDILRGWANFWIT 246
Query: 571 TLVAAGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGV--------FGNNAKDTGLPADIF 621
LVA + +++ ++ E G K SKS+G + +G AD
Sbjct: 247 MLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYG---------ADAL 296
Query: 622 RFYLLYVRPENQDTSF 637
R+YL + P D
Sbjct: 297 RYYLTSLAPYGDDIRL 312
Score = 62.1 bits (151), Expect = 4e-10
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
+T+ PY N HLG+ + ++ AD +R+ R+ ++ G D +G E KA +
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 343 GL-------------TPRQICDKYFAIHREVYEWFEI--DFDYFGRTSTPQQTEIVQHLF 387
G P++ ++ H+E + I D+ T+ P+ ++ V+ +F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 388 DRVHKAGF 395
R+++ G
Sbjct: 121 SRLYEKGL 128
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 64.3 bits (157), Expect = 3e-10
Identities = 83/368 (22%), Positives = 130/368 (35%), Gaps = 78/368 (21%)
Query: 464 STQLFLELPKIEDKLQSWVSETSDQW---SSNARVICKAWLKDGLKPRCITRDLKWG--I 518
S Q F+++ K+ DK E ++ R WL++ +K CI+R L WG I
Sbjct: 355 SKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRY--LNWLRN-IKDWCISRQLIWGHRI 411
Query: 519 PV---------------PLPGFENKYSLSS-------------SPSLVQFLPTATPQSKI 550
PV PLP + S S SL F P
Sbjct: 412 PVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETK 471
Query: 551 TLYQFMAKDNVPF-HSIMF--PATLVAAGDQYTK---VNHIMATEYLNYEDG-KFSKSRG 603
L +F D + + I+F A ++ T + + E G K SKS G
Sbjct: 472 DLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLG 531
Query: 604 TGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655
+ +G AD RF L + D +F W+ + ++ LN L
Sbjct: 532 NVIDPLDVIEKYG---------ADALRFTLASLVTPGDDINFDWKRV--ESARNFLNKLW 580
Query: 656 NFINRALSFIEKNYGSTIPEISPIHEDFLL-----LALINRELSAYYSVLDKAKLRDGIR 710
N A F+ N S E+S E L L+ +NR + LDK + + +
Sbjct: 581 N----ASRFVLMN-LSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAK 635
Query: 711 YILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTA 768
+ + +C+ Y++ + L+ G+ +K A L + LL P+MP
Sbjct: 636 ALYEFIWNDFCDWYIELVKY-RLYNGNEAEKKAARDTLYYVLDK---ALRLLHPFMPFIT 691
Query: 769 STIASQLG 776
I
Sbjct: 692 EEIWQHFK 699
Score = 45.0 bits (107), Expect = 2e-04
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 276 PQPNEN--NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT 333
P N N I P V H+G+ + + D+ +R+ R+ N L++ GTD G
Sbjct: 26 PDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQ-DIIARYKRMKGYNVLWLPGTDHAGI 84
Query: 334 ATETK----ALEEGLTPRQICDKYFAIHREVYEW----------------FEIDFD--YF 371
AT+ K EG T + + F +++EW +D+ F
Sbjct: 85 ATQVKVEKKLGAEGKTKHDLGREEFR--EKIWEWKEESGGTIKNQIKRLGASLDWSRERF 142
Query: 372 GRTSTPQQTEIVQHLFDRVHKAGF 395
T ++ V+ F R+++ G
Sbjct: 143 --TMDEGLSKAVKEAFVRLYEKGL 164
>gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain.
Length = 56
Score = 52.3 bits (126), Expect = 9e-09
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 850 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 890
L +A QG+LVR++K+ K + V KLL+LKKQ +
Sbjct: 1 LYEKIAAQGDLVRKLKAKKAPKEDVDAAVKKLLALKKQYKE 41
Score = 52.3 bits (126), Expect = 9e-09
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 1076
L +A QG+LVR++K+ K + V KLL+LKKQ +
Sbjct: 1 LYEKIAAQGDLVRKLKAKKAPKEDVDAAVKKLLALKKQYKE 41
Score = 46.2 bits (110), Expect = 1e-06
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
L +I Q ++VR LKA K A + KLL+LK+Q TG
Sbjct: 1 LYEKIAAQGDLVRKLKA-KKAPKEDVDAAVKKLLALKKQYKEKTGK 45
Score = 44.2 bits (105), Expect = 6e-06
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
L +I Q ++VR LKA K A + KLL+LK+Q TG
Sbjct: 1 LYEKIAAQGDLVRKLKA-KKAPKEDVDAAVKKLLALKKQYKEKTG 44
>gnl|CDD|198340 cd10307, GST_C_MetRS_N, Glutathione S-transferase C-terminal-like,
alpha helical domain of Methionyl-tRNA synthetase from
higher eukaryotes. Glutathione S-transferase (GST)
C-terminal domain family, Methionyl-tRNA synthetase
(MetRS) subfamily; This model characterizes the
GST_C-like domain found in the N-terminal region of
MetRS from higher eukaryotes. Aminoacyl-tRNA synthetases
(aaRSs) comprise a family of enzymes that catalyze the
coupling of amino acids with their matching tRNAs. This
involves the formation of an aminoacyl adenylate using
ATP, followed by the transfer of the activated amino
acid to the 3'-adenosine moiety of the tRNA. AaRSs may
also be involved in translational and transcriptional
regulation, as well as in tRNA processing. MetRS is a
class I aaRS, containing a Rossman fold catalytic core.
It recognizes the initiator tRNA as well as the Met-tRNA
for protein chain elongation. The GST_C-like domain of
MetRS from higher eukaryotes is likely involved in
protein-protein interactions, to mediate the formation
of the multi-aaRS complex that acts as a molecular hub
to coordinate protein synthesis. AaRSs from prokaryotes,
which are active as dimers, do not contain this
GST_C-like domain.
Length = 102
Score = 53.7 bits (129), Expect = 1e-08
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 75 AINQWLEWESVELFPSVLSFF----DNPKVLPDNLKTKLNVLNE-----AISNSFLIENS 125
NQWLEWE+ L P++ K +L T LN L ++ L+ +
Sbjct: 4 LSNQWLEWEAWLLQPALSLALALTHVQGKKSEADLNTVLNALVHLDQSLLKKSTPLLGDK 63
Query: 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL 166
+ AD+ +W+ +YPL +D P + N+ W+ +S L
Sbjct: 64 LSSADVVVWSALYPLGTDKSALP--ENLDNLRRWFQNVSTL 102
>gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain. This short
RNA-binding domain is found in several higher eukaryote
aminoacyl-tRNA synthetases (aaRSs). It is found in three
copies in the mammalian bifunctional EPRS in a region
that separates the N-terminal GluRS from the C-terminal
ProRS. In the Drosophila EPRS, this domain is repeated
six times. It is found at the N-terminus of TrpRS, HisRS
and GlyR and at the C-terminus of MetRS. This domain
consists of a helix- turn- helix structure, which is
similar to other RNA-binding proteins. It is involved in
both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for
the formation of aaRSs into multienzyme complexes.
Length = 42
Score = 51.4 bits (124), Expect = 1e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 851 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 890
+A QG+LVR++K+ K E V KLL+LK Q +
Sbjct: 1 YEKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40
Score = 51.4 bits (124), Expect = 1e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1037 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 1076
+A QG+LVR++K+ K E V KLL+LK Q +
Sbjct: 1 YEKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40
Score = 40.6 bits (96), Expect = 9e-05
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 921 EAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALT 963
+I +Q ++VR LKA K A + KLL+LK Q T
Sbjct: 1 YEKIAEQGDLVRKLKA-EKAPKEEIDAAVKKLLALKAQYKEAT 42
Score = 39.4 bits (93), Expect = 2e-04
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1107 EAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149
+I +Q ++VR LKA K A + KLL+LK Q T
Sbjct: 1 YEKIAEQGDLVRKLKA-EKAPKEEIDAAVKKLLALKAQYKEAT 42
>gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called
WHEP-TRS has been shown.to exist in a number of higher
eukaryote aminoacyl-transfer RNA synthetases. This
domain is present one to six times in the several
enzymes. There are three copies in mammalian
multifunctional aminoacyl-tRNA synthetase in a region
that separates the N-terminal glutamyl-tRNA synthetase
domain from the C-terminal prolyl-tRNA synthetase
domain, and six copies in the intercatalytic region of
the Drosophila enzyme. The domain is found at the
N-terminal extremity of the mammalian tryptophanyl- tRNA
synthetase and histidyl-tRNA synthetase, and the
mammalian, insect, nematode and plant glycyl- tRNA
synthetases. This domain could contain a central
alpha-helical region and may play a role in the
association of tRNA-synthetases into multienzyme
complexes.
Length = 56
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 851 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDA 901
E AVA QG LVR++K+ K E V KLL+LK QL+ Q
Sbjct: 1 EEAVAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAP 51
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 1037 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDA 1087
E AVA QG LVR++K+ K E V KLL+LK QL+ Q
Sbjct: 1 EEAVAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAP 51
Score = 42.3 bits (100), Expect = 3e-05
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 921 EAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTG 964
E + Q E+VR LKA K A +AKLL+LK QL TG
Sbjct: 1 EEAVAAQGELVRKLKA-EKASKDEIDAAVAKLLALKAQLKEATG 43
Score = 40.4 bits (95), Expect = 1e-04
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 1107 EAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
E + Q E+VR LKA K A +AKLL+LK QL TG
Sbjct: 1 EEAVAAQGELVRKLKA-EKASKDEIDAAVAKLLALKAQLKEATG 43
>gnl|CDD|198290 cd03181, GST_C_EF1Bgamma_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of the Gamma
subunit of Elongation Factor 1B and similar proteins.
Glutathione S-transferase (GST) C-terminal domain
family, Gamma subunit of Elongation Factor 1B
(EF1Bgamma) subfamily; EF1Bgamma is part of the
eukaryotic translation elongation factor-1 (EF1) complex
which plays a central role in the elongation cycle
during protein biosynthesis. EF1 consists of two
functionally distinct units, EF1A and EF1B. EF1A
catalyzes the GTP-dependent binding of aminoacyl-tRNA to
the ribosomal A site concomitant with the hydrolysis of
GTP. The resulting inactive EF1A:GDP complex is recycled
to the active GTP form by the guanine-nucleotide
exchange factor EF1B, a complex composed of at least two
subunits, alpha and gamma. Metazoan EFB1 contain a third
subunit, beta. The EF1B gamma subunit contains a GST
fold consisting of an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain. The GST-like
domain of EF1Bgamma is believed to mediate the
dimerization of the EF1 complex, which in yeast is a
dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In
addition to its role in protein biosynthesis, EF1Bgamma
may also display other functions. The recombinant rice
protein has been shown to possess GSH conjugating
activity. The yeast EF1Bgamma binds to membranes in a
calcium dependent manner and is also part of a complex
that binds to the msrA (methionine sulfoxide reductase)
promoter suggesting a function in the regulation of its
gene expression. Also included in this subfamily is the
GST_C-like domain at the N-terminus of human valyl-tRNA
synthetase (ValRS) and its homologs. Metazoan ValRS
forms a stable complex with Elongation Factor-1H
(EF-1H), and together, they catalyze consecutive steps
in protein biosynthesis, tRNA aminoacylation and its
transfer to EF.
Length = 123
Score = 47.9 bits (115), Expect = 2e-06
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 73 ESAINQWLEWESVELFPSVLSFF-----------DNPKVLPDNLKTKLNVLNEAI-SNSF 120
+ + QW+ + + EL P+ ++ ++LK L VL E + + ++
Sbjct: 2 AAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRTY 61
Query: 121 LIENSTTVADI---CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
L+ T+ADI + + D + R Y N+T W++ + P+ +
Sbjct: 62 LVGERITLADIFVASALLRGFETVLDPEFR---KKYPNVTRWFNTVVNQPKFKAVFG 115
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 48.7 bits (116), Expect = 4e-06
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 40/186 (21%)
Query: 26 LDVELVDV-------ADARLLLS--KTVPVLELDDGSQLFSANQSCLYL-SKFDTKN--- 72
L E+V V L L+ VP L DDG L + YL ++
Sbjct: 24 LPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLP 83
Query: 73 --------ESAINQWLEWESVELFPSVLSFFDNPKVLPD------------NLKTKLNVL 112
+ + WL + + +L P + ++ L +L
Sbjct: 84 ADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALL 143
Query: 113 NEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP---Q 168
+++ +L + T+ADI + ++ L + L+ Y + WY+R+ P
Sbjct: 144 EALLADGPYLAGDRFTIADIALAPLLWRLA---LLGEELADYPALKAWYERVLARPAFRA 200
Query: 169 VQKALK 174
VQ+AL+
Sbjct: 201 VQEALE 206
>gnl|CDD|198324 cd10291, GST_C_YfcG_like, C-terminal, alpha helical domain of
Escherichia coli YfcG Glutathione S-transferases and
related uncharacterized proteins. Glutathione
S-transferase (GST) C-terminal domain family, YfcG-like
subfamily; composed of the Escherichia coli YfcG and
related proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. YfcG is one of nine GST homologs in
Escherichia coli. It is expressed predominantly during
the late stationary phase where the predominant form of
GSH is glutathionylspermidine (GspSH), suggesting that
YfcG might interact with GspSH. It has very low or no
GSH transferase or peroxidase activity, but displays a
unique disulfide bond reductase activity that is
comparable to thioredoxins (TRXs) and glutaredoxins
(GRXs). However, unlike TRXs and GRXs, YfcG does not
contain a redox active cysteine residue and may use a
bound thiol disulfide couple such as 2GSH/GSSG for
activity. The crystal structure of YcfG reveals a bound
GSSG molecule in its active site. The actual
physiological substrates for YfcG are yet to be
identified.
Length = 110
Score = 44.2 bits (105), Expect = 3e-05
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 111 VLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169
VL+ ++ S +L + ++ADI IW V L+ + N+ W++R++ P V
Sbjct: 51 VLDRRLAKSKYLAGDEYSIADIAIWPWVARH---EWQGIDLADFPNLKRWFERLAARPAV 107
Query: 170 QKA 172
QK
Sbjct: 108 QKG 110
>gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the
Glutathione S-transferase family. Glutathione
S-transferase (GST) family, C-terminal alpha helical
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK).
Soluble GSTs bear no structural similarity to microsomal
GSTs (MAPEG family) and display additional activities
unique to their group, such as catalyzing thiolysis,
reduction and isomerization of certain compounds. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Based on sequence similarity, different classes of GSTs
have been identified, which display varying tissue
distribution, substrate specificities and additional
specific activities. In humans, GSTs display
polymorphisms which may influence individual
susceptibility to diseases such as cancer, arthritis,
allergy and sclerosis. Some GST family members with
non-GST functions include glutaredoxin 2, the CLIC
subfamily of anion channels, prion protein Ure2p,
crystallins, metaxins, stringent starvation protein A,
and aminoacyl-tRNA synthetases.
Length = 100
Score = 42.1 bits (99), Expect = 1e-04
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 76 INQWLEWESVELFPSVLSFFDNPKVLP-----------DNLKTKLNVLNEAIS-NSFLIE 123
+ +W L P ++ KV + L L L + ++ +L
Sbjct: 1 VRALEDWADATLAPPLVRLLYLEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLAG 60
Query: 124 NSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI 163
+ ++AD+ + + L + LL Y + WYDR+
Sbjct: 61 DQFSLADVALAPVLARLEALGPYYDLLDEYPRLKAWYDRL 100
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 46.3 bits (110), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATET 337
++ I S PY + H+G++ ++ DV SR+ R+ N L+ G D +G E
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTIT-DVLSRYYRMKGYNVLHPIGWDAFGLPAEN 84
Query: 338 KALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGF 395
A++ G+ P + + A ++ + +D+ T P+ + Q +F + + G
Sbjct: 85 AAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144
Query: 396 TSSASVEQLHCAQCDRFLADRFV--EGVCPKCRYE 428
+ C LA+ V +G +
Sbjct: 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGDTP 179
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 45.3 bits (108), Expect = 1e-04
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
I PY + H+G++ + D+ +R+ R+ N L+ G D +G E A++ G
Sbjct: 4 ILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGR 62
Query: 345 TPRQICDKYFAIHREVYEW--FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
P + +E + F D+ T P+ + Q LF ++++ G
Sbjct: 63 DPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAP 122
Query: 403 QLHCAQCDRFLAD 415
C D++
Sbjct: 123 VNWCKLLDQWFLK 135
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 45.5 bits (108), Expect = 2e-04
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 846 SVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTS 905
++ E +AAV QGN VR +K+S +K+E ++KL +LK + A++ + +AA A
Sbjct: 8 ALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDG 67
Query: 906 ATPSASDNSADVKALE 921
A + A V LE
Sbjct: 68 AASKEAFRQAVVNTLE 83
Score = 45.5 bits (108), Expect = 2e-04
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 1032 SVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTS 1091
++ E +AAV QGN VR +K+S +K+E ++KL +LK + A++ + +AA A
Sbjct: 8 ALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDG 67
Query: 1092 ATPSASDNSADVKALE 1107
A + A V LE
Sbjct: 68 AASKEAFRQAVVNTLE 83
Score = 36.3 bits (84), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 909 SASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSAL 962
S + +A + Q VR LKAS DK+ A + KL +LK + SAL
Sbjct: 1 SEDSLRDALAEKQAAVTAQGNAVRALKASK-ADKAEIDAAIEKLKALKLEKSAL 53
Score = 35.9 bits (83), Expect = 0.14
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 1095 SASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSAL 1148
S + +A + Q VR LKAS DK+ A + KL +LK + SAL
Sbjct: 1 SEDSLRDALAEKQAAVTAQGNAVRALKASK-ADKAEIDAAIEKLKALKLEKSAL 53
>gnl|CDD|198322 cd10289, GST_C_AaRS_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of various
Aminoacyl-tRNA synthetases and similar domains.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily;
This model characterizes the GST_C-like domain found in
the N-terminal region of some eukaryotic AaRSs, as well
as similar domains found in proteins involved in protein
synthesis including Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2 (AIMP2),
AIMP3, and eukaryotic translation Elongation Factor 1
beta (eEF1b). AaRSs comprise a family of enzymes that
catalyze the coupling of amino acids with their matching
tRNAs. This involves the formation of an aminoacyl
adenylate using ATP, followed by the transfer of the
activated amino acid to the 3'-adenosine moiety of the
tRNA. AaRSs may also be involved in translational and
transcriptional regulation, as well as in tRNA
processing. AaRSs in this subfamily include GluRS from
lower eukaryotes, as well as GluProRS, MetRS, and CysRS
from higher eukaryotes. AIMPs are non-enzymatic
cofactors that play critical roles in the assembly and
formation of a macromolecular multi-tRNA synthetase
protein complex found in higher eukaryotes. The
GST_C-like domain is involved in protein-protein
interactions, mediating the formation of aaRS complexes
such as the MetRS-Arc1p-GluRS ternary complex in lower
eukaryotes and the multi-aaRS complex in higher
eukaryotes, that act as molecular hubs for protein
synthesis. AaRSs from prokaryotes, which are active as
dimers, do not contain this GST_C-like domain.
Length = 82
Score = 40.4 bits (95), Expect = 2e-04
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 77 NQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEA-ISNSFLIENSTTVADICIWT 135
Q +W ++L S+L L+ L LN S +FL+ S T+AD+ +++
Sbjct: 3 AQVDQW--LDLAGSLLKG--------KELEALLKSLNSYLASRTFLVGYSLTLADVAVFS 52
Query: 136 CVYPLLSDSKVRPLLSSYTNITPWYDRIS 164
+YP + + ++T W++ I
Sbjct: 53 ALYPSGQKLSDK-EKKKFPHVTRWFNHIQ 80
>gnl|CDD|198342 cd10309, GST_C_GluProRS_N, Glutathione S-transferase
C-terminal-like, alpha helical domain of bifunctional
Glutamyl-Prolyl-tRNA synthetase. Glutathione
S-transferase (GST) C-terminal domain family,
bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS)
subfamily; This model characterizes the GST_C-like
domain found in the N-terminal region of GluProRS from
higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs)
comprise a family of enzymes that catalyze the coupling
of amino acids with their matching tRNAs. This involves
the formation of an aminoacyl adenylate using ATP,
followed by the transfer of the activated amino acid to
the 3'-adenosine moiety of the tRNA. AaRSs may also be
involved in translational and transcriptional
regulation, as well as in tRNA processing. The
GST_C-like domain of GluProRS may be involved in
protein-protein interactions, mediating the formation of
the multi-aaRS complex in higher eukaryotes. The
multi-aaRS complex acts as a molecular hub for protein
synthesis. AaRSs from prokaryotes, which are active as
dimers, do not contain this GST_C-like domain.
Length = 81
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 92 LSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLL 150
+SF + + L+ L++A+S ++L+ NS T+AD +W + + +
Sbjct: 9 ISFSAGRLSCDQDFSSALSYLDKALSLRTYLVGNSLTLADFAVWAALR---GNGEWLASK 65
Query: 151 SSYTNITPWYDRISKL 166
Y N+T W+ IS
Sbjct: 66 EKYVNVTRWFKFISSQ 81
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 44.2 bits (105), Expect = 4e-04
Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 17/168 (10%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+ PY + H+G++ + DV +R+ R+ N L+ G D +G E A++ G
Sbjct: 38 VLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDY---FGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
P + A ++ + D+ F T P+ + +Q F ++++ G
Sbjct: 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREF-ATCDPEYYKWIQWQFLKLYEKGLAYRKEA 155
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQ 449
C LA+ E C CG+ + EL Q
Sbjct: 156 PVNWCPVDGTVLAN------------EQVIDGGCWRCGEPVEIKELTQ 191
Score = 43.8 bits (104), Expect = 6e-04
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 50/227 (22%)
Query: 563 FHSIMFPATLVAAGDQYTK-VNHIMATEYLNYEDGKFSKSRGTGV--------FGNNAKD 613
FH +F LV + + K + M L E K SKS+G V +G
Sbjct: 547 FHKALFDEGLVPKDEPFKKLITQGMV---LGEEGEKMSKSKGNVVDPEEAVEKYG----- 598
Query: 614 TGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI 673
AD R Y+++ P QD W + + F+ R + ++++ +
Sbjct: 599 ----ADTVRLYIMFAAPPEQD--LEWSE-------SGVEGARRFLQRVWNLVKEHLEKLV 645
Query: 674 PEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP--WVL 731
E++ + L++R + + R N M+ L
Sbjct: 646 EELTK-EQGKEDRWLLHRTIKKVTEDFEA-------RQTFN--TAIAALMELLNALRKYL 695
Query: 732 FKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778
+ ++K + + LL+P+ P A + +LG
Sbjct: 696 RRTEGDRKVLREALETWV--------RLLAPFAPHIAEELWEELGNE 734
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 43.4 bits (103), Expect = 7e-04
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 33/196 (16%)
Query: 594 EDG-KFSKSRGTGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644
E G K SKS+G + +G AD RF L + +D +F + +
Sbjct: 521 EQGRKMSKSKGNVIDPLDVIDKYG---------ADALRFTLASLASPGRDINFDEKRV-- 569
Query: 645 KNNSELLNNLGNFINR-ALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKA 703
+ LN L N R L ++ + ++ D +L+ +N + LD
Sbjct: 570 EGYRNFLNKLWN-ATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNY 628
Query: 704 KLRDGIR----YILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLL 759
+ + R +I N +C+ Y++ +P L+ G E+++ +T L V L L
Sbjct: 629 RFDEAARALYEFIWND--FCDWYLELAKP-RLYGGEEEKRAARAT----LYYVLDTLLRL 681
Query: 760 LSPYMPSTASTIASQL 775
L P+MP I +L
Sbjct: 682 LHPFMPFITEEIWQKL 697
Score = 42.2 bits (100), Expect = 0.002
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 29/129 (22%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQI 349
P V H+G+ + L D+ +R+ R+ N L+ GTD G AT+ +E+ L I
Sbjct: 42 PNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVV-VEKQLAAEGI 99
Query: 350 CDKYFAIHRE-----VYEWFE----------------IDFD--YFGRTSTPQQTEIVQHL 386
+ RE +EW E +D+ F T P + VQ
Sbjct: 100 --TRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERF--TMDPGLSRAVQEA 155
Query: 387 FDRVHKAGF 395
F R+++ G
Sbjct: 156 FVRLYEKGL 164
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 43.0 bits (102), Expect = 0.001
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 37/193 (19%)
Query: 594 EDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLN 652
E G K SKS G V + D ADI R ++ D FS + L K E+
Sbjct: 598 EKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASSDYWE-DLRFSDEIL--KQVREVYR 653
Query: 653 NLGNFINRALSFIEKNYG------STIPEISPIHEDFLLLALIN---RELSAYYSVLDKA 703
+ N F+ N + D +L+ +N +E+ Y D
Sbjct: 654 KIRN----TYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYD-- 707
Query: 704 KLRDGIRYILNISRYCNQ-----YMQTQQP--WVLFKGSPEQKSRASTVLG-ILCQVSYL 755
+R ++N + ++ Y+ + + SP++++ A T L IL
Sbjct: 708 -FHKVVRALMN---FVSEDLSNWYLDIIKDRLYTEAADSPDRRA-AQTTLYHILKA---- 758
Query: 756 LSLLLSPYMPSTA 768
L LL+P +P TA
Sbjct: 759 LVRLLAPILPFTA 771
>gnl|CDD|198287 cd03177, GST_C_Delta_Epsilon, C-terminal, alpha helical domain of
Class Delta and Epsilon Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Class Delta and Epsilon subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. The class Delta and Epsilon subfamily
is made up primarily of insect GSTs, which play major
roles in insecticide resistance by facilitating
reductive dehydrochlorination of insecticides or
conjugating them with GSH to produce water-soluble
metabolites that are easily excreted. They are also
implicated in protection against cellular damage by
oxidative stress.
Length = 117
Score = 39.4 bits (93), Expect = 0.001
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 76 INQWLEWESVELFPSVLSFFDNP----KVLPDNLKTKLNVLNEAIS--NSFLIE------ 123
+NQ L ++S L+ + ++ P+ KL EA+ +FL
Sbjct: 6 VNQRLFFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLE---EALEFLETFLEGSDYVAG 62
Query: 124 NSTTVADICIWTCVYPLLSDSKVRPL-LSSYTNITPWYDRISKLP 167
+ T+AD+ + V S +V LS Y N+ WY+R+ LP
Sbjct: 63 DQLTIADLSLVATV----STLEVVGFDLSKYPNVAAWYERLKALP 103
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 42.2 bits (99), Expect = 0.002
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 189 SLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVT 248
S AL S S + +L++ + A +++ ++ + A V ++KS D T
Sbjct: 5 RPSSALLSCSSIRRLNPLLLSACRRRAWAPRRAARRFCAAAASENDVFTSPETAKSFDFT 64
Query: 249 SEEIEQTKVAW-TQGSPVPLRTRTAP--VLPQPNENNILITSALPYVNNVPHLGNIIGCV 305
SEE + W +QG P R V+P P N +T +L H+G+ +
Sbjct: 65 SEE--RIYNWWESQGYFKPNFDRGGDPFVIPMPPPN---VTGSL-------HMGHAMFVT 112
Query: 306 LSADVFSRFCRLVNRNTLYVSGTDEYGTAT----ETKALEEGLTPRQICDKYFAIHREVY 361
L D+ R+ R+ R TL++ GTD G AT E EG+ + F + V+
Sbjct: 113 LE-DIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFT--KRVW 169
Query: 362 EWFEIDFDYFGRTSTPQ 378
EW E +G T T Q
Sbjct: 170 EWKE----KYGGTITNQ 182
>gnl|CDD|238473 cd00936, WEPRS_RNA, WEPRS_RNA binding domain. This short
RNA-binding domain is found in several higher eukaryote
aminoacyl-tRNA synthetases (aaRSs). It is found in
multiple copies in eukaryotic bifunctional
glutamyl-prolyl-tRNA synthetases (EPRS) in a region that
separates the N-terminal glutamyl-tRNA synthetase
(GluRS) from the C-terminal prolyl-tRNA synthetase
(ProRS). It is also found at the N-terminus of
vertebrate tryptophanyl-tRNA synthetases (TrpRS). This
domain consists of a helix-turn-helix structure, which
is similar to other RNA-binding proteins. It is involved
in both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for
the formation of aaRSs into multienzyme complexes.
Length = 50
Score = 36.4 bits (85), Expect = 0.003
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
L +I Q ++VR LKA K A + KLL+LK TG
Sbjct: 1 LYKKIAAQGDLVRELKA-KKAPKEEIDAAVKKLLALKADYKEATGQ 45
Score = 36.4 bits (85), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 854 VATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQ 887
+A QG+LVR++K+ K E V KLL+LK
Sbjct: 5 IAAQGDLVRELKAKKAPKEEIDAAVKKLLALKAD 38
Score = 36.4 bits (85), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1040 VATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQ 1073
+A QG+LVR++K+ K E V KLL+LK
Sbjct: 5 IAAQGDLVRELKAKKAPKEEIDAAVKKLLALKAD 38
Score = 35.3 bits (82), Expect = 0.009
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
L +I Q ++VR LKA K A + KLL+LK TG
Sbjct: 1 LYKKIAAQGDLVRELKA-KKAPKEEIDAAVKKLLALKADYKEATG 44
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 41.2 bits (97), Expect = 0.004
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLTPRQ 348
P + H+G+ + L D+ R+ R+ + L+V G D +G TE K ++ G+ ++
Sbjct: 32 PNATGLLHIGHALNKTLK-DIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEKKLGIKGKK 90
Query: 349 ICDKYF--AIHREVYEWFE----------------IDFD--YFGRTSTPQQTEIVQHLFD 388
K + EW D+D YF T P V +F
Sbjct: 91 DRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYF--TLDPGLEAAVWRVFV 148
Query: 389 RVHKAGF 395
R+H G
Sbjct: 149 RLHDKGL 155
>gnl|CDD|239342 cd03044, GST_N_EF1Bgamma, GST_N family, Gamma subunit of
Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma
is part of the eukaryotic translation elongation
factor-1 (EF1) complex which plays a central role in
the elongation cycle during protein biosynthesis. EF1
consists of two functionally distinct units, EF1A and
EF1B. EF1A catalyzes the GTP-dependent binding of
aminoacyl-tRNA to the ribosomal A site concomitant with
the hydrolysis of GTP. The resulting inactive EF1A:GDP
complex is recycled to the active GTP form by the
guanine-nucleotide exchange factor EF1B, a complex
composed of at least two subunits, alpha and gamma.
Metazoan EFB1 contain a third subunit, beta. The EF1B
gamma subunit contains a GST fold consisting of an
N-terminal TRX-fold domain and a C-terminal alpha
helical domain. The GST-like domain of EF1Bgamma is
believed to mediate the dimerization of the EF1
complex, which in yeast is a dimer of the heterotrimer
EF1A:EF1Balpha:EF1Bgamma. In addition to its role in
protein biosynthesis, EF1Bgamma may also display other
functions. The recombinant rice protein has been shown
to possess GSH conjugating activity. The yeast
EF1Bgamma binds membranes in a calcium dependent manner
and is also part of a complex that binds to the msrA
(methionine sulfoxide reductase) promoter suggesting a
function in the regulation of its gene expression.
Length = 75
Score = 36.5 bits (85), Expect = 0.005
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 5 SNRNNVQTLKLLITAEFSTTKLDVELVDVADARLLLS---------KTVPVLELDDGSQL 55
+ N ++LK+L A+++ LDVE+VD + + VP E DG L
Sbjct: 5 TYPGNPRSLKILAAAKYN--GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCL 62
Query: 56 FSANQSCLYLS 66
F +N Y++
Sbjct: 63 FESNAIAYYVA 73
>gnl|CDD|198288 cd03178, GST_C_Ure2p_like, C-terminal, alpha helical domain of
Ure2p and related Glutathione S-transferase-like
proteins. Glutathione S-transferase (GST) C-terminal
domain family, Ure2p-like subfamily; composed of the
Saccharomyces cerevisiae Ure2p, YfcG and YghU from
Escherichia coli, and related GST-like proteins. Ure2p
is a regulator for nitrogen catabolism in yeast. It
represses the expression of several gene products
involved in the use of poor nitrogen sources when rich
sources are available. A transmissible conformational
change of Ure2p results in a prion called [Ure3], an
inactive, self-propagating and infectious amyloid. Ure2p
displays a GST fold containing an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain. The N-terminal thioredoxin-fold domain is
sufficient to induce the [Ure3] phenotype and is also
called the prion domain of Ure2p. In addition to its
role in nitrogen regulation, Ure2p confers protection to
cells against heavy metal ion and oxidant toxicity, and
shows glutathione (GSH) peroxidase activity. YfcG and
YghU are two of the nine GST homologs in the genome of
Escherichia coli. They display very low or no GSH
transferase, but show very good disulfide bond
oxidoreductase activity. YghU also shows modest organic
hydroperoxide reductase activity. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of GSH with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain.
Length = 110
Score = 37.2 bits (87), Expect = 0.007
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 74 SAINQWLEWESVELFP---SVLSFF-----DNPKVLP---DNLKTKLNVLNEAIS-NSFL 121
+ + QWL ++ L P F P + D +K VL++ +S +L
Sbjct: 3 AEVLQWLFFQMSGLGPMFGQAGHFLYFAPEKIPYAIERYTDEVKRLYGVLDKRLSDRPYL 62
Query: 122 IENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQK 171
++ADI ++ + +D LS Y N+ W +RI+ P VQK
Sbjct: 63 AGEEYSIADIALYP--WTHYADLGGFADLSEYPNVKRWLERIAARPAVQK 110
>gnl|CDD|198327 cd10294, GST_C_ValRS_N, Glutathione S-transferase C-terminal-like,
alpha helical domain of vertebrate Valyl-tRNA
synthetase. Glutathione S-transferase (GST) C-terminal
domain family, Valyl-tRNA synthetase (ValRS) subfamily;
This model characterizes the GST_C-like domain found in
the N-terminal region of human ValRS and its homologs
from other vertebrates such as frog and zebrafish.
Aminoacyl-tRNA synthetases (aaRSs) comprise a family of
enzymes that catalyze the coupling of amino acids with
their matching tRNAs. This involves the formation of an
aminoacyl adenylate using ATP, followed by the transfer
of the activated amino acid to the 3'-adenosine moiety
of the tRNA. AaRSs may also be involved in translational
and transcriptional regulation, as well as in tRNA
processing. They typically form large stable complexes
with other proteins. ValRS forms a stable complex with
Elongation Factor-1H (EF-1H), and together, they
catalyze consecutive steps in protein biosynthesis, tRNA
aminoacylation and its transfer to EF. The GST_C-like
domain of ValRS from higher eukaryotes is likely
involved in protein-protein interactions, to mediate the
formation of the multi-aaRS complex that acts as a
molecular hub to coordinate protein synthesis. ValRSs
from prokaryotes and lower eukaryotes, such as fungi and
plants, do not appear to contain this GST_C-like domain.
Length = 123
Score = 37.5 bits (87), Expect = 0.007
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 73 ESAINQWLEWESVELFP-------SVLSFFDNPKVLPDN----LKTKLNVLNEAIS-NSF 120
+ + QW+ + EL P +L + K L+ L VL+ + ++
Sbjct: 2 CALVWQWVSFADNELTPAACAAAFPLLGLSGSDKQNQQRSLAELQRVLKVLDCYLKLRTY 61
Query: 121 LIENSTTVADICIWTCVYPLLSDSKV--RPLLSSYTNITPWYDRISKLPQVQKAL 173
L+ + T+ADI + + LL V S N+T W+ P+ L
Sbjct: 62 LVGEAITLADIAVACAL--LLPFKYVLDPARRESLLNVTRWFLTCVNQPEFLAVL 114
>gnl|CDD|166114 PLN02473, PLN02473, glutathione S-transferase.
Length = 214
Score = 38.8 bits (90), Expect = 0.009
Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 31/184 (16%)
Query: 20 EFSTTKLDVELVDVADARLLLSK---TVPVLELDDGSQLFSANQ-SCLYLSKF------- 68
EF +D++ ++ LL + VP +E D +LF + + Y +K+
Sbjct: 27 EFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE-DGDLKLFESRAIARYYATKYADQGTDL 85
Query: 69 ---DTKNESAINQWLEWES----VELFPSVLSFFDNPK-------VLPDNLKTKLNVL-- 112
++ + ++QW+E E+ P V++ P+ L + LK K + +
Sbjct: 86 LGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLD 145
Query: 113 ---NEAISNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169
N +N +L + T+AD+ + +++++ + L++S N+ W++ IS P
Sbjct: 146 VYENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAW 205
Query: 170 QKAL 173
+K +
Sbjct: 206 KKLM 209
>gnl|CDD|238474 cd00938, HisRS_RNA, HisRS_RNA binding domain. This short RNA-binding
domain is found at the N-terminus of HisRS in several
higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This
domain consists of a helix- turn- helix structure, which
is similar to other RNA-binding proteins. It is involved
in both protein-RNA interactions by binding tRNA and
protein-protein interactions, which are important for the
formation of aaRSs into multienzyme complexes.
Length = 45
Score = 34.8 bits (80), Expect = 0.011
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQL 1145
LE ++ Q E+VR LKA + I A ++AKLL LK QL
Sbjct: 2 KLEEAVKLQGELVRKLKAEKASKEQI-AEEVAKLLELKAQL 41
Score = 34.8 bits (80), Expect = 0.013
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 848 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
+LE AV QG LVR++K+ K + V KLL LK QL
Sbjct: 1 AKLEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQL 41
Score = 34.8 bits (80), Expect = 0.013
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 1034 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 1074
+LE AV QG LVR++K+ K + V KLL LK QL
Sbjct: 1 AKLEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQL 41
Score = 33.2 bits (76), Expect = 0.041
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 919 ALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQL 959
LE ++ Q E+VR LKA + + A ++AKLL LK QL
Sbjct: 2 KLEEAVKLQGELVRKLKAEKASKEQI-AEEVAKLLELKAQL 41
>gnl|CDD|198298 cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of
GTT1-like Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family,
Saccharomyces cerevisiae GTT1-like subfamily; composed
of predominantly uncharacterized proteins with
similarity to the S. cerevisiae GST protein, GTT1, and
the Schizosaccharomyces pombe GST-III. GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. GTT1, a homodimer, exhibits GST
activity with standard substrates and associates with
the endoplasmic reticulum. Its expression is induced
after diauxic shift and remains high throughout the
stationary phase. S. pombe GST-III is implicated in the
detoxification of various metals.
Length = 123
Score = 36.9 bits (86), Expect = 0.011
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 104 NLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDR 162
LK L+ L + ++ + + + T ADI + +PL + PLL Y NI + +R
Sbjct: 62 ELKRHLDFLEDHLAKHPYFAGDELTAADIMMS---FPLEAALARGPLLEQYPNIAAYLER 118
Query: 163 ISKLP 167
I P
Sbjct: 119 IEARP 123
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 37.5 bits (87), Expect = 0.012
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQI 349
N H+G++ V D ++ R + ++ D+ G A ++G +
Sbjct: 6 ITPNGYLHIGHLRTIVT-FDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAF 64
Query: 350 CDKYFAIHREVYEW 363
+++ +E E+
Sbjct: 65 VERWIERIKEDVEY 78
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.9 bits (91), Expect = 0.017
Identities = 62/355 (17%), Positives = 132/355 (37%), Gaps = 42/355 (11%)
Query: 823 GGQQNKESS-----NNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPH 877
GG +NK SS K+ +++ + +E+LE + + N +R ++ E
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713
Query: 878 VDKLLS-LKKQLEAMKSQ------QRAATDANQTSATPSASDNSADVKALEAEIEKQAEV 930
+++ L LK++L A++ + + + + ++ LE E+E E
Sbjct: 714 LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773
Query: 931 VRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKIGTPA 990
+ LK + A +L L+++L + +
Sbjct: 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER-------- 825
Query: 991 PLFRKIEQA--QVDEWKLKYG--------GQQNKESSNNKKEKKQAEITF--SSVEELEA 1038
L ++IE+ +++E + K ++ E + E+ +AE ++ELE
Sbjct: 826 -LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884
Query: 1039 AVATQGNLVRQVKSSGVE-KSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSAS 1097
+R+++S E K E + ++L L+ +LE ++ + + + +
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLE 944
Query: 1098 DN-SADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGD 1151
+++ LE EIE V L+A + + LK Q L
Sbjct: 945 TELEREIERLEEEIEALGPV--NLRA-----IEEYEEVEERYEELKSQREDLEEA 992
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is involved
in determining the site of synaptic vesicle fusion. The
C-terminus is a PDZ-binding motif that binds directly to
RIM (a small G protein Rab-3A effector). The family also
contains four coiled-coil domains.
Length = 774
Score = 38.8 bits (90), Expect = 0.018
Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 58/281 (20%)
Query: 879 DKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASA 938
+K L+K+L+ +++ +A + A S S AD E+++ + + +
Sbjct: 528 EKHEKLEKELKRLRANPESADRGSAVDAGTSRS--RADSAGARNEVDRLLDRLEKAEQER 585
Query: 939 GGDKSVFAADLAKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKIGTPAPLFRKIEQ 998
D + A LAK L ++ LT T T+ K+ A L + E+
Sbjct: 586 D-DTEMEAGRLAKEL--EKAQRHLTKQQEKTEATRIEFERKS---------AELLEEAER 633
Query: 999 AQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKS 1058
+ E EE +TQ + + +E
Sbjct: 634 LEKSE-----------------------------AEEETLRQSTQIGHAQAAAHNHIEH- 663
Query: 1059 EWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVR 1118
HV KL S KQL A + Q A + +Q S + ++ A EAE K E R
Sbjct: 664 ----HVQKLESDLKQLRAEREQLVAQLEKSQQ----SLMEFQQELNAAEAERRKHLEENR 715
Query: 1119 TLK------ASAGGDKSIFAADLAKLLSLKQQLSALTGDTG 1153
LK A + D +I +L+ K Q
Sbjct: 716 ELKQEALLAAISEKDANIALLELSASKKKKTQEEVALLRRE 756
Score = 35.4 bits (81), Expect = 0.21
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 825 QQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLV---RQVKSSGVEKSEWQPHVDKL 881
Q+ E++ + E+K AE+ E LE + A + L + + + + HV KL
Sbjct: 610 QEKTEATRIEFERKSAELL-EEAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKL 668
Query: 882 LSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASAG 939
S KQL A + Q A + +Q S + ++ A EAE K E R LK A
Sbjct: 669 ESDLKQLRAEREQLVAQLEKSQQ----SLMEFQQELNAAEAERRKHLEENRELKQEAL 722
>gnl|CDD|198338 cd10305, GST_C_AIMP3, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 3.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 3 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP3, also called p18 or eukaryotic translation
elongation factor 1 epsilon-1 (EEF1E1), contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It specifically interacts
with methionyl-tRNA synthetase (MetRS) and is
translocated to the nucleus during DNA synthesis or in
response to DNA damage and oncogenic stress. In the
nucleus, it interacts with ATM and ATR, which are
upstream kinase regulators of p53. It appears to work
against DNA damage in cooperation with AIMP2, and
similar to AIMP2, AIMP3 is also a haploinsufficient
tumor suppressor. AIMP3 transgenic mice have shorter
lifespans than wild-type mice and they show
characteristics of progeria, suggesting that AIMP3 may
also be involved in cellular and organismal aging.
Length = 101
Score = 35.7 bits (83), Expect = 0.022
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 19/104 (18%)
Query: 76 INQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAI-SNSFLIENSTTVADICIW 134
++QWLE+ ++ P+ + K+ L LN + ++L+ + T+AD+ ++
Sbjct: 7 VDQWLEYRVTQVAPASDKA---------DAKSLLKELNSYLQDRTYLVGHKLTLADVVLY 57
Query: 135 TCVYPLLSD----SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
++P++ D K + Y N++ W+D + LP +++ L
Sbjct: 58 YGLHPIMKDLSPQEKEQ-----YLNVSRWFDHVQHLPGIRQHLP 96
>gnl|CDD|183298 PRK11752, PRK11752, putative S-transferase; Provisional.
Length = 264
Score = 37.6 bits (88), Expect = 0.026
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 106 KTKLNVLNEAISNS-FLIENSTTVADICIWT----CVYPLLSDSKVRPLLSSYTNITPWY 160
K +L+VL++ ++ ++ + T+ADI IW V L D+ + SY ++ W
Sbjct: 184 KRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWA 243
Query: 161 DRISKLPQVQKAL---KTWTE 178
I++ P V++ +TW E
Sbjct: 244 KEIAERPAVKRGRIVNRTWGE 264
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 38.4 bits (90), Expect = 0.028
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 274 VLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT 333
VLP PN +T L H+G+ + D R+ R+ TL+V GTD G
Sbjct: 65 VLPPPN-----VTGYL-------HIGHAL-TGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111
Query: 334 ATET---KAL--EEGLTPRQICDKYFAIHREVYEW 363
AT+ K L EE T + + F ++V+EW
Sbjct: 112 ATQVVVEKKLMKEENKTRHDLGREEFL--KKVWEW 144
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 37.2 bits (87), Expect = 0.029
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 268 RTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327
TR N + + P V + H+G+ V DV R+ + YV
Sbjct: 6 LTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYV-VFDVLRRYLEDLGYKVRYVQN 64
Query: 328 -TDEYGTATETKALEEGLTPRQICDKYFA 355
TD +A EEGL+ +++ D Y
Sbjct: 65 ITD-IDDKIIKRAREEGLSWKEVADYYTK 92
Score = 31.4 bits (72), Expect = 2.3
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 582 VNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626
+ + T +L + K SKS G + +A ++ R LL
Sbjct: 159 ARYWLHTGHLTIDGEKMSKSLGNFITVRDA-LKKYDPEVLRLALL 202
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 37.7 bits (87), Expect = 0.044
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 36/167 (21%)
Query: 274 VLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT 333
VLP PN +T +L HLG+ + L DV R+ R+ NTL++ GTD G
Sbjct: 53 VLPPPN-----VTGSL-------HLGHALTATLQ-DVLIRWKRMSGFNTLWLPGTDHAGI 99
Query: 334 ATET---KALE--EGLTPRQICDKYFAIHREVYEWFE----------------IDFDYFG 372
AT+ K L+ E + + + F V+ W E +D+
Sbjct: 100 ATQMIVEKELKKTEKKSRHDLGREAFL--ERVWAWKEQYGSRIGEQHKALGASLDWQRER 157
Query: 373 RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE 419
T + V+ +F R+H+ G C C L+D VE
Sbjct: 158 FTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 36.8 bits (86), Expect = 0.077
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 585 IMATEYLNYEDGKFSKSRGTGVFGNNAKDT-GLPADIFRFYLLYVRPENQDTSFSWQDLA 643
I+ ++ E K SKS+G + A + G AD+ R YL ++ QD
Sbjct: 565 IVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYG--ADVVRLYLTS-------SAELLQDAD 615
Query: 644 TKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKA 703
+ + ++ + R ++ E D LL+ +NR + ++
Sbjct: 616 WREK--EVESVRRQLERFYELAKELIEIGG-EEELRFIDKWLLSRLNRIIKETTEAMESF 672
Query: 704 KLRDGIRYIL-NISRYCNQYM 723
+ RD ++ + Y+
Sbjct: 673 QTRDAVQEAFYELLNDLRWYL 693
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 36.6 bits (85), Expect = 0.098
Identities = 41/283 (14%), Positives = 107/283 (37%), Gaps = 35/283 (12%)
Query: 873 EWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVR 932
+ ++L L+++L+ + + T A+++ LE ++E
Sbjct: 233 RLEELREELEELQEELKEAEEELEELT---------------AELQELEEKLE------- 270
Query: 933 TLKASAGGDKSVFAADLAKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKIGTPAPL 992
L+ + +L +L ++S L + + L
Sbjct: 271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL--ANLERQLEELEAQLEEL 328
Query: 993 FRKIE--QAQVDEWKLKYGGQQNK----ESSNNKKEKKQAEITFSSVEELEAAVATQGNL 1046
K++ ++ E + K + + E+ + E + E+ S +EELE + T +
Sbjct: 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE-SRLEELEEQLETLRSK 387
Query: 1047 VRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSA-SDNSADVKA 1105
V Q++ + + +++L + ++LE + + + + + + A+++
Sbjct: 388 VAQLEL---QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSAL 1148
LE E+E+ E + L+ + + L + +++L+ L
Sbjct: 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 36.6 bits (86), Expect = 0.100
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 39/104 (37%)
Query: 274 VLPQPNENNILITSALPYVNNVPHLGN-----IIGCVLSADVFSRFCRLVNRNTLYVSGT 328
V+P PN +T +L H+G+ + D+ R+ R+ NTL++ GT
Sbjct: 41 VIPPPN-----VTGSL-------HMGHALNNTLQ------DILIRYKRMQGYNTLWLPGT 82
Query: 329 DEYGTATETK----ALEEGLTPRQICDKYFAIHRE-----VYEW 363
D G AT+ EG + + RE V+EW
Sbjct: 83 DHAGIATQMVVERQLAAEGKSRHD-------LGREKFLEKVWEW 119
>gnl|CDD|222326 pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1.
Transposase proteins are necessary for efficient DNA
transposition. This domain is a member of the DDE
superfamily, which contain three carboxylate residues
that are believed to be responsible for coordinating
metal ions needed for catalysis.
Length = 443
Score = 36.2 bits (84), Expect = 0.12
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 470 ELPKIEDKLQSWVSETSDQWSSNARVICKA-WLKDGLKPRCITRDLKWGIPVPLPGFENK 528
E + E +L S V T+ WS + RV+ KA W GL PR + L G P + K
Sbjct: 274 EKARRELRLYSDVYYTAKSWSRSRRVVTKAEWGSKGLNPRFVVTPL--GEIPPSKLYTKK 331
Query: 529 YS 530
Y
Sbjct: 332 YC 333
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 36.2 bits (84), Expect = 0.12
Identities = 55/302 (18%), Positives = 100/302 (33%), Gaps = 96/302 (31%)
Query: 848 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSAT 907
+E E L + S E + + +L + ++LE + A
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL------ND 783
Query: 908 PSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGTTG 967
A + + + ++AE+ K E V ++A L +L K+ L
Sbjct: 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARL----REIEQKLNRLTLEKEYLEKE----- 834
Query: 968 TTNNTKCNNSSKNSSSHKIGTPAPLFRKIEQAQVDEWKLKYGG-QQNKESSNNKKEKKQA 1026
+ Q Q + K + ++ E+ N KKE+ +
Sbjct: 835 --------------------------IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
Query: 1027 EITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086
E+ EELEAA+ +L LKK+ + +++Q R
Sbjct: 869 EL-----EELEAALRDLE--------------------SRLGDLKKERDELEAQLRELER 903
Query: 1087 ANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLS 1146
+ LEA+IEK+ + + LKA KL +L+++LS
Sbjct: 904 KIEE---------------LEAQIEKKRKRLSELKA--------------KLEALEEELS 934
Query: 1147 AL 1148
+
Sbjct: 935 EI 936
Score = 31.2 bits (71), Expect = 4.2
Identities = 45/302 (14%), Positives = 96/302 (31%), Gaps = 54/302 (17%)
Query: 835 KEKKQAEITF---SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHV-DKLLSLKKQLEA 890
E++ ++T + LE L +++K G E Q V +K+ L+ ++ +
Sbjct: 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG---EEEQLRVKEKIGELEAEIAS 305
Query: 891 MKSQQRAATDANQTSATPSASDNS--------------------ADVKALEAEIEKQAEV 930
++ + + A + L E + E
Sbjct: 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
Query: 931 VRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKIGTPA 990
+ L+A FA +L +++L L N ++
Sbjct: 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLK-------------REINELKRELDRLQ 412
Query: 991 PLFRKIEQAQVD-EWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQ 1049
+++ + D + + E K++ K EI +LE A ++
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKED-KALEIK-KQEWKLEQLAADLSKYEQE 470
Query: 1050 VKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAE 1109
+ K E+ +L L+++L ++Q RA + A + L+A
Sbjct: 471 LYD---LKEEYDRVEKELSKLQRELAEAEAQARA--------SEERVRGGRAVEEVLKAS 519
Query: 1110 IE 1111
I+
Sbjct: 520 IQ 521
>gnl|CDD|238472 cd00935, GlyRS_RNA, GlyRS_RNA binding domain. This short
RNA-binding domain is found at the N-terminus of GlyRS
in several higher eukaryote aminoacyl-tRNA synthetases
(aaRSs). This domain consists of a helix-turn-helix
structure , which is similar to other RNA-binding
proteins. It is involved in both protein-RNA
interactions by binding tRNA and protein-protein
interactions, which are important for the formation of
aaRSs into multienzyme complexes.
Length = 51
Score = 32.1 bits (73), Expect = 0.14
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 847 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 890
+ L AAV QG+LVR++K G + + V +L + KK LE
Sbjct: 1 LAPLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLED 44
Score = 32.1 bits (73), Expect = 0.14
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 1076
+ L AAV QG+LVR++K G + + V +L + KK LE
Sbjct: 1 LAPLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLED 44
>gnl|CDD|239347 cd03049, GST_N_3, GST_N family, unknown subfamily 3; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 32.6 bits (75), Expect = 0.14
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 14 KLLITAEFSTTKLDVELVDVA----DARLL----LSKTVPVLELDDGSQLFSANQSCLYL 65
K+ + A + DVELV V D LL L K +P L LDDG LF + C YL
Sbjct: 14 KVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGK-IPALVLDDGEALFDSRVICEYL 72
>gnl|CDD|198289 cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown
subfamily 2 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 2; composed of uncharacterized bacterial
proteins, with similarity to GSTs. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Length = 110
Score = 33.0 bits (76), Expect = 0.20
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 78 QWLEWESVELFPSVLSFF-----------DNPKV--LPDNLKTKLNVLNEAIS-NSFLIE 123
+W++W++ L P+ F D + + +L+ ++ ++L
Sbjct: 8 RWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAACNKLMAILDAQLARQAYLAG 67
Query: 124 NSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167
+ T+ADI + VY L RP + ++ WY R+S+ P
Sbjct: 68 DRFTLADIALGCSVYRWLELPIERP---ALPHLERWYARLSQRP 108
>gnl|CDD|198293 cd03184, GST_C_Omega, C-terminal, alpha helical domain of Class
Omega Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, Class
Omega subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. The GST fold contains an
N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain. Class Omega
GSTs show little or no GSH-conjugating activity towards
standard GST substrates. Instead, they catalyze the GSH
dependent reduction of protein disulfides,
dehydroascorbate and monomethylarsonate, activities
which are more characteristic of glutaredoxins. They
contain a conserved cysteine equivalent to the first
cysteine in the CXXC motif of glutaredoxins, which is a
redox active residue capable of reducing GSH mixed
disulfides in a monothiol mechanism. Polymorphisms of
the class Omega GST genes may be associated with the
development of some types of cancer and the age-at-onset
of both Alzheimer's and Parkinson's diseases.
Length = 124
Score = 33.1 bits (76), Expect = 0.22
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 87 LFPSVLSFFDNPKVLPDNLKTKLNVLNEAISN---SFLIENSTTVADICIWTCVYPLLSD 143
F L ++ K L + L++ L L E ++ F NS + D IW L +
Sbjct: 19 AFYKFLRSGEDRKGLKEELRSALENLEEELAKRGTPFFGGNSPGMVDYMIWPWFERLEAL 78
Query: 144 SKVRPL---LSSYTNITPWYDRISKLPQVQKALKTWTEVLKG 182
+ L + + W + + P V+ A T E
Sbjct: 79 KLLDGYELCLDRFPKLKKWMAAMKQDPAVK-AFYTDPETHAE 119
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 34.9 bits (80), Expect = 0.27
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 574 AAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQ 633
A G + V + + E+L GK SKS G + ++ ++ G +RF+LL +Q
Sbjct: 258 ATGKPW--VRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQ 315
Query: 634 DTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE 675
+FSW+ L T + + + R ++ +T
Sbjct: 316 -LAFSWEALKTAKAAR-----RSLVRRVARVVDAARATTGSV 351
>gnl|CDD|198297 cd03188, GST_C_Beta, C-terminal, alpha helical domain of Class Beta
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Beta subfamily;
GSTs are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. Unlike mammalian GSTs which detoxify
a broad range of compounds, the bacterial class Beta
GSTs exhibit GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they are involved in the protection against oxidative
stress and are able to bind antibiotics and reduce the
antimicrobial activity of beta-lactam drugs,
contributing to antibiotic resistance. The structure of
the Proteus mirabilis enzyme reveals that the cysteine
in the active site forms a covalent bond with GSH. One
member of this subfamily is a GST from Burkholderia
xenovorans LB400 that is encoded by the bphK gene and is
part of the biphenyl catabolic pathway.
Length = 113
Score = 32.6 bits (75), Expect = 0.29
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 76 INQWLEWESVELFPSVLSFFDNP-------------KVLPDNLKTKLNVLNEAIS-NSFL 121
+ +WL + + EL + P + L+ +L L+ ++ +L
Sbjct: 6 LLEWLNFIASELHKA-FGPLFYPARWADDALAEEVKAAARERLERRLAYLDAQLAGGPYL 64
Query: 122 IENSTTVADICIWTCVYPLLSDSKVRPL-LSSYTNITPWYDRISKLPQVQKAL 173
+ + +VAD ++ +L ++ L LS + ++ + R++ P VQ AL
Sbjct: 65 LGDQFSVADAY----LFVVLRWARAVGLDLSDWPHLAAYLARVAARPAVQAAL 113
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 34.9 bits (81), Expect = 0.30
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 574 AAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL---YVRP 630
AA + M +LN + K SKS G + + ++ R +LL Y P
Sbjct: 245 AATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSSHYRSP 303
Query: 631 ENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI 676
+ FS + L + L L N + R + + E
Sbjct: 304 LD----FSEELLEEAKKA--LERLYNALRRLRDLAGDAELADLKEF 343
Score = 31.8 bits (73), Expect = 2.5
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 268 RTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327
TR + + + P V + H+G+ V+ DV R+ R + YV
Sbjct: 8 LTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVF-DVLRRYLRYLGYKVTYVRN 66
Query: 328 -TDEYGTATETK----ALEEGLTPRQICDKYFA 355
TD + K A EEGL+ R++ ++Y A
Sbjct: 67 ITD-----IDDKIINRAREEGLSIREVAERYIA 94
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 34.5 bits (80), Expect = 0.33
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLTPRQ 348
PY N +PH G+ + +L D+ +R+ + G D +G E K +E G++ ++
Sbjct: 10 PYANGLPHYGHALNKILK-DIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKK 68
Query: 349 ICDKY 353
+K
Sbjct: 69 DIEKM 73
Score = 31.4 bits (72), Expect = 2.6
Identities = 46/200 (23%), Positives = 73/200 (36%), Gaps = 33/200 (16%)
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPV 520
+++ Q F+ + KI+D+L + W + WL++ + CI+R WG P+
Sbjct: 148 RATPQWFIRVTKIKDRLLEANDKV--NWIPEWVKNRFGNWLEN-RRDWCISRQRYWGTPI 204
Query: 521 PL---PGFENKYSLSSSPSL-VQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAG 576
P+ L V F + P +++ Y F +D FPA + G
Sbjct: 205 PVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLH-YPFENEDFEEL----FPADFILEG 259
Query: 577 -DQYTK---VNHIMATEYLN---Y-----------EDG-KFSKSRGTGVFGNNAKDTGLP 617
DQ +++T Y EDG K SKS G V D
Sbjct: 260 SDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDK-YG 318
Query: 618 ADIFRFYLLYVRPENQDTSF 637
AD R ++ +D F
Sbjct: 319 ADALRLWVASSDVYAEDLRF 338
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 34.9 bits (80), Expect = 0.35
Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 165 KLPQVQKALKTWTEVLKGSANDVGSLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQ 224
K + +KA + + LK + EA L S T ++ K + K +++
Sbjct: 21 KKKKEEKAKEKELKKLKAAQK------EAKAKLQAQQASDGT---NVPKKSE---KKSRK 68
Query: 225 QPESKAKPAAVVEDD--------LSSK-SKDVTSEEIEQTKVAWTQGS------PVPLRT 269
+ P ++ D LSS+ +K + +E++ AW + S +
Sbjct: 69 RDVEDENPEDFIDPDTPFGQKKRLSSQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKP 128
Query: 270 RTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTD 329
VLP PN +T AL H+G+ + + D R+ R+ N L+V G D
Sbjct: 129 PFVIVLPPPN-----VTGAL-------HIGHALTAAIE-DTIIRWKRMSGYNALWVPGVD 175
Query: 330 EYGTAT----ETKAL-EEGLTPRQICDKYFAIHREVYEW 363
G AT E K + E LT I + F EV++W
Sbjct: 176 HAGIATQVVVEKKLMRERHLTRHDIGREEFV--SEVWKW 212
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 34.2 bits (78), Expect = 0.38
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 821 KYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVK---SSGVEKSEWQPH 877
+YG Q+++SS K E+++ + EEL+ A + ++Q++ E+ +
Sbjct: 63 QYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEE 122
Query: 878 VDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKAS 937
+K L+++ + ++++ AA + A + + A AE +K+AE
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Query: 938 A 938
A
Sbjct: 183 A 183
Score = 34.2 bits (78), Expect = 0.38
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 1007 KYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVK---SSGVEKSEWQPH 1063
+YG Q+++SS K E+++ + EEL+ A + ++Q++ E+ +
Sbjct: 63 QYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEE 122
Query: 1064 VDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKAS 1123
+K L+++ + ++++ AA + A + + A AE +K+AE
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Query: 1124 A 1124
A
Sbjct: 183 A 183
>gnl|CDD|222111 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain.
This domain is closely related to pfam00043.
Length = 69
Score = 30.8 bits (70), Expect = 0.45
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
L+ L+ L E ++ +L+ + ++ADI + + L L + Y N+ W +
Sbjct: 9 AQLERALDALEERLADGPYLLGDRPSLADIALAPALARLDFRGPGLDLRAGYPNLRAWLE 68
Query: 162 R 162
R
Sbjct: 69 R 69
>gnl|CDD|198325 cd10292, GST_C_YghU_like, C-terminal, alpha helical domain of
Escherichia coli Yghu Glutathione S-transferases and
related uncharacterized proteins. Glutathione
S-transferase (GST) C-terminal domain family, YghU-like
subfamily; composed of the Escherichia coli YghU and
related proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. YghU is one of nine GST homologs in
the genome of Escherichia coli. It is similar to
Escherichia coli YfcG in that it has poor GSH
transferase activity towards typical substrates. It
shows modest reductase activity towards some organic
hydroperoxides. Like YfcG, YghU also shows good
disulfide bond oxidoreductase activity comparable to the
activities of glutaredoxins and thioredoxins. YghU does
not contain a redox active cysteine residue, and may use
a bound thiol disulfide couple such as 2GSH/GSSG for
activity. The crystal structure of YghU reveals two GSH
molecules bound in its active site.
Length = 118
Score = 32.0 bits (73), Expect = 0.59
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 106 KTKLNVLNEAISN-SFLIENSTTVADICIWT----CVYPLLSDSKVRPLLSSYTNITPWY 160
K +L+VL+ ++ +L + T+AD+ IW L D+ + Y ++ W
Sbjct: 46 KRQLDVLDRQLATHKYLAGDEYTIADMAIWPWYGGLALGSLYDAAEFLDVDEYKHVQRWA 105
Query: 161 DRISKLPQVQK 171
I+ P V++
Sbjct: 106 KDIAARPAVKR 116
>gnl|CDD|182533 PRK10542, PRK10542, glutathionine S-transferase; Provisional.
Length = 201
Score = 33.1 bits (76), Expect = 0.61
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 44 VPVLELDDGSQLFSANQSCLYL--SKFDTKNESAIN--------QWLEWESVELFPSVLS 93
VP L LDDG+ L YL S D + + + +WL + + EL
Sbjct: 52 VPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSLSRYHTIEWLNYIATELHKGFTP 111
Query: 94 FFDNPKVLPDNLKT--------KLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDS 144
F P P+ K K ++EA+++ ++ T+AD ++T +L +
Sbjct: 112 LF-RPDT-PEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFT----VLRWA 165
Query: 145 KVRPL-LSSYTNITPWYDRISKLPQVQKALKT 175
L L +I + R+++ P V ALK
Sbjct: 166 YAVKLNLEGLEHIAAYMQRVAERPAVAAALKA 197
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 33.6 bits (77), Expect = 0.73
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 279 NENNILITSALPYVNNVPHLGNIIGCVLS-ADVFSRFCRLVNRNTLY-----VSGTDEYG 332
+ +T A PY+N V H G+ + +V +RF R+ +N L+ V+GT G
Sbjct: 23 DREKFFLTMAYPYLNGVMHAGH--CRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80
Query: 333 TATETKALEEGLTPRQICDKYFAIHREVYEWF---EIDFDYFGR 373
A K +E + + AI RE F E +YF R
Sbjct: 81 LAELIKRRDELTI--KNYTEVHAIPREELLKFTDPEYIVEYFSR 122
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 33.6 bits (76), Expect = 0.76
Identities = 66/322 (20%), Positives = 124/322 (38%), Gaps = 42/322 (13%)
Query: 811 EQAQVDEWKLKYGGQQNKESSNNK-KEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGV 869
E+ + DE K K + + + K +E K+AE EE + A + K
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA--------DEAKKKAE 1480
Query: 870 EKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAE 929
E + K KK+ + K A A++ A + +A +AE K+A+
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK---KAEEAKKADEAKKAEEAKKAD 1537
Query: 930 VVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKIGTP 989
+ + D+ A +L K K+ K KN + K
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKK-----------AEEAKKAEEDKNMALRK---- 1582
Query: 990 APLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEK---------KQAEITFSSVEELEAAV 1040
A +K E+A+++E Y ++ ++ KK + K+AE VE+L+
Sbjct: 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
Query: 1041 ATQGNLVRQVK----SSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSA 1096
A + ++K + ++ +E ++ KK EA K+++ A
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEE--DKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
Query: 1097 SDNSADVKALEAEIEKQAEVVR 1118
+ + ++K EAE +K+AE ++
Sbjct: 1701 AKKAEELKKKEAEEKKKAEELK 1722
Score = 33.6 bits (76), Expect = 0.90
Identities = 56/325 (17%), Positives = 116/325 (35%), Gaps = 27/325 (8%)
Query: 808 RKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSS 867
RK E A+ E K + E + ++ K+AE + E +A + R+ +++
Sbjct: 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAA 1205
Query: 868 GVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVK--------- 918
+ E + + K+ EA+K + A DA + +N K
Sbjct: 1206 RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
Query: 919 -----ALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGTTGTTNNTK 973
A++AE ++A+ ++ + D++ A + K K++ K
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK---------AEEAKK 1316
Query: 974 CNNSSKNSSSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSV 1033
+ + K + K A + E + E E+ +++ + AE
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Query: 1034 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSAT 1093
++ A + ++ + + E + D+ LKK A K A A +
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADE---LKKAAAAKKKADEAKKKAEEKKKA 1433
Query: 1094 PSASDNSADVKALEAEIEKQAEVVR 1118
A + + K + E +K+AE +
Sbjct: 1434 DEAKKKAEEAKKAD-EAKKKAEEAK 1457
>gnl|CDD|148314 pfam06632, XRCC4, DNA double-strand break repair and V(D)J
recombination protein XRCC4. This family consists of
several eukaryotic DNA double-strand break repair and
V(D)J recombination protein XRCC4 sequences. In the
non-homologous end joining pathway of DNA double-strand
break repair, the ligation step is catalyzed by a complex
of XRCC4 and DNA ligase IV. It is thought that XRCC4 and
ligase IV are essential for alignment-based gap filling,
as well as for final ligation of the breaks.
Length = 331
Score = 32.9 bits (75), Expect = 0.82
Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 33/233 (14%)
Query: 905 SATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAK---LLSLKQQLSA 961
+ S SD S + + E EK + +R S G + + +K S ++ L
Sbjct: 44 TGEVSESDISQEADDMAMEREKYVDELRKALVSGAGPAGEYTFNFSKESLHFSYEKNLKD 103
Query: 962 LTGTTGTTNNTKCNNSS---KNSSSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSN 1018
++ G+ K N + + + + T A L K E Q + +L +
Sbjct: 104 VSFRLGSFKLEKVPNPAEVIRELICYCLDTIAELQAKNEHLQKENERLLRDWNDIQG--- 160
Query: 1019 NKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078
+ E S E LE + + LV K + K+ SL K L +
Sbjct: 161 ------RFEKCVSGKEALETDLYKRFILVLNEKKA------------KIRSLHKLLSEAQ 202
Query: 1079 SQQRAATDANQTSATPSASDNSADVKAL---EAEIEKQAEVVRTLKASAGGDK 1128
++ Q T + SD + D + + E++A + A K
Sbjct: 203 ELEK---SIKQKKETSACSDKTPDEDSKYDGSTDEEQEAPPKPSESMPAAVSK 252
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 33.2 bits (77), Expect = 0.92
Identities = 36/168 (21%), Positives = 55/168 (32%), Gaps = 43/168 (25%)
Query: 574 AAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGN--NAKD--TGLPADIFRFYLL--- 626
A G + N+ M ++ K SKS GN +D ++ RF+LL
Sbjct: 245 ATGKPF--ANYWMHNGFVTVNGEKMSKS-----LGNFFTIRDLLKKYDPEVLRFFLLSAH 297
Query: 627 YVRPENQDTSFSWQDL-ATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFL- 684
Y P N FS + L K L L N + + + + E+ E F+
Sbjct: 298 YRSPLN----FSEEALEQAKKA---LERLYNALAETALGEDD--EALLAELEEFKERFIE 348
Query: 685 -----------------LLALINRELSAYYSVLDKAKLRDGIRYILNI 715
L INR L A L +R + ++
Sbjct: 349 AMDDDFNTPEALAVLFELAREINRALET-KDKEAAAALAALLRALADV 395
>gnl|CDD|177177 MTH00116, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 515
Score = 33.1 bits (76), Expect = 0.93
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 240 LSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQPNE 280
SSK K V E+ T + W G P P T P Q E
Sbjct: 476 FSSKRK-VLQPELTTTNIEWIHGCPPPYHTFEEPAFVQVQE 515
>gnl|CDD|178642 PLN03094, PLN03094, Substrate binding subunit of ER-derived-lipid
transporter; Provisional.
Length = 370
Score = 32.4 bits (74), Expect = 1.5
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 30/143 (20%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKS------------EWQPHVDKLLSLKKQLEAMKSQQR- 1082
L+ V L R++++ GV K E +P + K+ ++ + L+ + S+ R
Sbjct: 229 LDELVGICTRLAREMEAIGVAKMYALAERAADLMEEARPLLLKIQAMAEDLQPLLSEVRD 288
Query: 1083 AATDANQTSATPSASDNSADVKALEAEI--EKQAEVVRTLKASAGGDKSIFAADLAKLL- 1139
+ T A++ S D++ L + I + E++R +SI+ L K L
Sbjct: 289 SGLLKEVEKLTRVAAEASEDLRRLNSSILTPENTELLR---------QSIYT--LTKTLK 337
Query: 1140 ---SLKQQLSALTGDTGTTNNTK 1159
S+ +S TGD T N K
Sbjct: 338 HIESISSDISGFTGDEATRRNLK 360
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.5 bits (74), Expect = 1.5
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 19/147 (12%)
Query: 822 YGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKL 881
Y QQ ++ S + E+++ + EEL+ A + ++Q++ + E + ++
Sbjct: 64 YNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Query: 882 LSL------------KKQLEAMK-----SQQRAATDANQTSATPSASDNSADVKALEAEI 924
K A K +RAA A + +A + K AE
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEA 183
Query: 925 EKQAEVVRTLKASAGGDKSVFAADLAK 951
+K+AE KA+A K A AK
Sbjct: 184 KKKAEAEAAAKAAAEAKKK--AEAEAK 208
Score = 32.5 bits (74), Expect = 1.5
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 19/147 (12%)
Query: 1008 YGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKL 1067
Y QQ ++ S + E+++ + EEL+ A + ++Q++ + E + ++
Sbjct: 64 YNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Query: 1068 LSL------------KKQLEAMK-----SQQRAATDANQTSATPSASDNSADVKALEAEI 1110
K A K +RAA A + +A + K AE
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEA 183
Query: 1111 EKQAEVVRTLKASAGGDKSIFAADLAK 1137
+K+AE KA+A K A AK
Sbjct: 184 KKKAEAEAAAKAAAEAKKK--AEAEAK 208
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 32.5 bits (74), Expect = 1.6
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 297 HLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAI 356
H+G+ G + D+ +R+ R+ N L+ G D +G E A+E G P+ K A
Sbjct: 127 HVGHPEGYTAT-DILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185
Query: 357 HREVYE--WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLA 414
R + F D+D T+ P+ + Q +F ++ K G A V C LA
Sbjct: 186 FRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLA 245
Query: 415 DRFV 418
+ V
Sbjct: 246 NEEV 249
>gnl|CDD|226831 COG4396, COG4396, Mu-like prophage host-nuclease inhibitor protein
Gam [General function prediction only].
Length = 170
Score = 31.1 bits (70), Expect = 1.9
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 835 KEKKQAEITFSSVEELEAAVATQGNLVRQVK----SSGVEKSEWQPH-VDKLLSLKKQLE 889
K K+ A EE+ A + G+L R+VK +K+ + + LK ++
Sbjct: 5 KIKQPAIEAAQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIM 64
Query: 890 AMKSQQRAATDANQTSATPSASDNSAD 916
++ + +A +AN+ T + +A+
Sbjct: 65 SLTKRVQAYCEANRDELTENGKTKTAN 91
Score = 31.1 bits (70), Expect = 1.9
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 1021 KEKKQAEITFSSVEELEAAVATQGNLVRQVK----SSGVEKSEWQPH-VDKLLSLKKQLE 1075
K K+ A EE+ A + G+L R+VK +K+ + + LK ++
Sbjct: 5 KIKQPAIEAAQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIM 64
Query: 1076 AMKSQQRAATDANQTSATPSASDNSAD 1102
++ + +A +AN+ T + +A+
Sbjct: 65 SLTKRVQAYCEANRDELTENGKTKTAN 91
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.0 bits (73), Expect = 2.1
Identities = 54/339 (15%), Positives = 117/339 (34%), Gaps = 38/339 (11%)
Query: 825 QQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSL 884
++ KE ++ K++ ++EL+ + + L+R K E E + + +L
Sbjct: 546 EELKEKLQLQQLKEELRQLEDRLQELKELLE-ELRLLRTRKE---ELEELRERLKELKKK 601
Query: 885 KKQLEAMKSQQRAATDANQTSATPSASDNSA-DVKALEAEIEKQAEVVRTLKASAGGDKS 943
K+LE SQ + + S + + + ++++ ++ QAE+ L+A
Sbjct: 602 LKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQA------- 654
Query: 944 VFAADL-AKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKI-GTPAPLFRKIEQAQV 1001
+L K+ L+ ++ + ++ L +++
Sbjct: 655 -ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGE 713
Query: 1002 DEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQ 1061
E ++ + E KKE ++ E +EEL + +
Sbjct: 714 IEQLIEELESRKAELEELKKELEKLEKALELLEELREKL-----------------GKAG 756
Query: 1062 PHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLK 1121
D L +L Q+EA ++ + N+ D + VR +K
Sbjct: 757 LRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIR--KDGNGGLVVVVYDGGEVRPIK 814
Query: 1122 ASAGGDKSI----FAADLAKLLSLKQQLSALTGDTGTTN 1156
+GG++ + L+ LL + +L L D
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGT 853
>gnl|CDD|215674 pfam00043, GST_C, Glutathione S-transferase, C-terminal domain.
GST conjugates reduced glutathione to a variety of
targets including S-crystallin from squid, the
eukaryotic elongation factor 1-gamma, the HSP26 family
of stress-related proteins and auxin-regulated proteins
in plants. Stringent starvation proteins in E. coli are
also included in the alignment but are not known to have
GST activity. The glutathione molecule binds in a cleft
between N and C-terminal domains. The catalytically
important residues are proposed to reside in the
N-terminal domain. In plants, GSTs are encoded by a
large gene family (48 GST genes in Arabidopsis) and can
be divided into the phi, tau, theta, zeta, and lambda
classes.
Length = 92
Score = 29.6 bits (67), Expect = 2.1
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 95 FDNPKVLPDNLKTKLN----VLNEAISNS-FLIENSTTVADI---CIWTCVYPLLSDSKV 146
+ + + KL L E + +L+ + T+ADI +Y L
Sbjct: 17 EEKDEPEVEEALEKLLKVLEALEEVLKGKTYLVGDKLTLADIALAPALDWLYML-----E 71
Query: 147 RPLLSSYTNITPWYDRISKLP 167
L + N+ W R++ P
Sbjct: 72 PDPLEKFPNLKAWRKRVAARP 92
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 32.0 bits (73), Expect = 2.2
Identities = 43/192 (22%), Positives = 63/192 (32%), Gaps = 49/192 (25%)
Query: 31 VDVADARLLLSKTVPVLELDDGSQL-----------FSANQSCLYLSKFDTKNESAINQW 79
V + L S + P L G +L SA+ Y D S +++W
Sbjct: 25 VPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQ--DAFESSQVDEW 82
Query: 80 LEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCV-- 137
L++ S S F+N D S +FL+ S T+ADI IW+ +
Sbjct: 83 LDYAPTF---SSGSEFENACEYVDGYLA---------SRTFLVGYSLTIADIAIWSGLAG 130
Query: 138 ----YPLLSDSKVRPLLSSYTNITPWYDRISKLPQV------------QKALKTWTEVLK 181
+ L SK Y N+ W++ IS + A K K
Sbjct: 131 SGQRWESLRKSK------KYQNLVRWFNSISAEYSDILNEVTAAYVGKRGAGKPAAAKSK 184
Query: 182 GSANDVGSLSEA 193
D G A
Sbjct: 185 EKVADAGKADGA 196
>gnl|CDD|148664 pfam07191, DUF1407, Protein of unknown function (DUF1407). This
family consists of several short, hypothetical bacterial
proteins of around 70 residues in length. Members of
this family have 8 highly conserved cysteine residues,
which form two zinc ribbon domains.
Length = 70
Score = 28.8 bits (65), Expect = 2.4
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 419 EGVCPKCRYE---DARGDQCDGCGQLINAIELIQPRCKQCSQ 457
E +CP+C+ E CD C + Q C C Q
Sbjct: 1 ELICPQCQQELEWKGGHYHCDQCQKDFK----KQALCPDCHQ 38
>gnl|CDD|198296 cd03187, GST_C_Phi, C-terminal, alpha helical domain of Class Phi
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Phi subfamily;
composed of plant-specific class Phi GSTs and related
fungal and bacterial proteins. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
The GST fold contains an N-terminal thioredoxin-fold
domain and a C-terminal alpha helical domain, with an
active site located in a cleft between the two domains.
GSH binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
The class Phi GST subfamily has experience extensive
gene duplication. The Arabidopsis and Oryza genomes
contain 13 and 16 Tau GSTs, respectively. They are
primarily responsible for herbicide detoxification
together with class Tau GSTs, showing class specificity
in substrate preference. Phi enzymes are highly reactive
toward chloroacetanilide and thiocarbamate herbicides.
Some Phi GSTs have other functions including transport
of flavonoid pigments to the vacuole, shoot regeneration
and GSH peroxidase activity.
Length = 118
Score = 29.9 bits (68), Expect = 2.9
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 76 INQWLEWES-----------VEL-FPSVLSFFDNPKVLPDN---LKTKLNVLNEAISNS- 119
+ QWLE E+ EL F +L + V+ +N LK L+V +S S
Sbjct: 6 VEQWLEVEAHQFDPPASKLVFELVFKPMLGLKTDEAVVEENEAKLKKVLDVYEARLSKSK 65
Query: 120 FLIENSTTVADICIWTCVYPL-----LSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
+L +S T+AD+ L L + + L S ++ W++ IS P +K L
Sbjct: 66 YLAGDSFTLADL------SHLPNLHYLMATPSKKLFDSRPHVKAWWEDISARPAWKKVL 118
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 31.3 bits (71), Expect = 3.8
Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 20/175 (11%)
Query: 799 KIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEE-----LEAA 853
KI PA L + + +W K G + N + E +A + F +VEE +
Sbjct: 1 KITMPA-LSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVP 59
Query: 854 VATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL-EAMKSQQRAATDANQTSATPSASD 912
T+ V + + VE+ E K L+ A K + A T A
Sbjct: 60 EGTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQ 119
Query: 913 NSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQ--QLSALTGT 965
+ + A + +FA+ LAK L+ ++ LSA+ G+
Sbjct: 120 KQSPEPSSPAP-----------LSDKESGDRIFASPLAKKLAKEKGIDLSAVAGS 163
Score = 30.1 bits (68), Expect = 7.0
Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 19/176 (10%)
Query: 985 KIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEE-----LEAA 1039
KI PA L + + +W K G + N + E +A + F +VEE +
Sbjct: 1 KITMPA-LSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVP 59
Query: 1040 VATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL-EAMKSQQRAATDANQTSATPSASD 1098
T+ V + + VE+ E K L+ A K + A T A
Sbjct: 60 EGTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQ 119
Query: 1099 NSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGT 1154
+ + A + IFA+ LAK L+ ++ + L+ G+
Sbjct: 120 KQSPEPSSPAP-----------LSDKESGDRIFASPLAKKLAKEKGID-LSAVAGS 163
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 31.2 bits (71), Expect = 3.9
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 451 RCKQCSQAPTV-KSSTQLFLELPKIEDKLQSWVSETSDQW---SSNARVICKAWLKDGLK 506
R K P + +++ Q F++ I+D++ + + W R WL++
Sbjct: 411 RTKT----PVIYRATEQWFIKTKDIKDQMLEQIKKV--NWVPEWGEGRF--GNWLEN-RP 461
Query: 507 PRCITRDLKWGIPVPL 522
CI+R WGIP+P+
Sbjct: 462 DWCISRQRYWGIPIPI 477
Score = 30.8 bits (70), Expect = 5.1
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 594 EDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLN 652
E G K SKS G V + ADI R Y+ P D FS + L +++
Sbjct: 607 EKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASSDPWE-DLRFSDEILK-----QVVE 659
Query: 653 NLGNFINRALSFI 665
F+
Sbjct: 660 KYRKIRWNTYRFL 672
Score = 30.4 bits (69), Expect = 6.4
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
PY N HLG+ + +L D+ R+ + N G D +G E K ++
Sbjct: 45 PYANGSIHLGHALNKILK-DIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK 96
>gnl|CDD|233960 TIGR02642, phage_xxxx, uncharacterized phage protein. This
uncharacterized protein is found in prophage regions of
Shewanella oneidensis MR-1, Vibrio vulnificus YJ016,
Yersinia pseudotuberculosis IP 32953, and Aeromonas
hydrophila ATCC7966. It appears to have regions of
sequence similarity to phage lambda antitermination
protein Q [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 186
Score = 30.2 bits (68), Expect = 3.9
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 402 EQLHC--------AQCDRFLADRFVEGVCPKCR---YEDARGDQCDGCG 439
EQL A + + CP+CR R +CD C
Sbjct: 74 EQLLPLITPNAAEAASYLAVNEVLNSCKCPRCRGTGLIQRRQRECDTCA 122
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 31.2 bits (71), Expect = 4.2
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 20/73 (27%)
Query: 755 LLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQ 814
+SLLLS P A T S SP L Q +P G K +++
Sbjct: 119 FVSLLLSKVKPRQAKT--------------SLSPHLKQLVPPGSLNADKVDPPEKKNESR 164
Query: 815 VDE------WKLK 821
V + WKLK
Sbjct: 165 VKDKTLQKGWKLK 177
>gnl|CDD|107376 cd06381, PBP1_iGluR_delta_like, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of an orphan family of delta receptors,
GluRdelta1 and GluRdelta2. This CD represents the
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of an orphan family of delta
receptors, GluRdelta1 and GluRdelta2. While this
N-terminal domain belongs to the periplasmic-binding
fold type I superfamily, the glutamate-binding domain of
the iGluR is structurally homologous to the
periplasmic-binding fold type II. The LIVBP-like domain
of iGluRs is thought to play a role in the initial
assembly of iGluR subunits, but it is not well
understood how this domain is arranged and functions in
intact iGluR. Although the delta receptors are a member
of the ionotropic glutamate receptor family, they cannot
be activated by AMPA, kainate, NMDA, glutamate, or any
other ligands. Phylogenetic analysis shows that both
GluRdelta1 and GluRalpha2 are more homologous to
non-NMDA receptors. GluRdelta2 was shown to function as
an AMPA-like receptor by mutation analysis. Moreover,
targeted disruption of GluRdelta2 gene caused motor
coordination impairment, Purkinje cell maturation, and
long-term depression of synaptic transmission. It has
been suggested that GluRdelta2 is the receptor for
cerebellin 1, a glycoprotein of the Clq, and the tumor
necrosis factor family which is secreted from cerebellar
granule cells. Furthermore, recent studies have shown
that the orphan GluRdelta1 plays an essential role in
high-frequency hearing and ionic homeostasis in the
basal cochlea and that the locus encoding GluRdelta1 may
be involved in congenial or acquired high-frequency
hearing loss in humans.
Length = 363
Score = 30.9 bits (70), Expect = 4.2
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 16 LITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSKFDTKNESA 75
LI E S T ELV A R+ + + + +Q N + D K+
Sbjct: 233 LINEEISDT-EIDELVRYAHGRMTVIR--QTFSKEKTNQRCLRNNHRISSLLCDPKDGYL 289
Query: 76 INQWLEWESVELFPSVLSFFDNPKV 100
Q LE ++ ++ SVL + K
Sbjct: 290 --QMLEISNLYIYDSVLLLLETIKK 312
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 30.4 bits (69), Expect = 4.3
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 808 RKIEQAQVDEWKLKYGGQQNKESSNNK------KEKKQAEITFSSVEELEAAVATQGNLV 861
RK+E+AQ KL+ + ++ N +EK+ E + LEA + V
Sbjct: 59 RKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLE---DLAKALEAELQQAEEQV 115
Query: 862 RQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALE 921
++K + E + + +L + K+ L+A K+ +A N++ S+S A + +E
Sbjct: 116 EKLKKQ-LAALEQK--IAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERME 172
Query: 922 ---AEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSAL 962
E E +AE L +G D A ++ +L+AL
Sbjct: 173 EKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAAL 216
Score = 30.4 bits (69), Expect = 4.7
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 994 RKIEQAQVDEWKLKYGGQQNKESSNNK------KEKKQAEITFSSVEELEAAVATQGNLV 1047
RK+E+AQ KL+ + ++ N +EK+ E + LEA + V
Sbjct: 59 RKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLE---DLAKALEAELQQAEEQV 115
Query: 1048 RQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTSATPSASDNSADVKALE 1107
++K + E + + +L + K+ L+A K+ +A N++ S+S A + +E
Sbjct: 116 EKLKKQ-LAALEQK--IAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERME 172
Query: 1108 ---AEIEKQAE 1115
E E +AE
Sbjct: 173 EKIEEREARAE 183
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 30.4 bits (69), Expect = 4.5
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 24/130 (18%)
Query: 836 EKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK--- 892
E E E LE + Q + V Q++ + E K+ LK + A+K
Sbjct: 92 EIATLE---KQAEALETQLTQQRSAVEQLRKQ-LAALE-----TKIQQLKAKKTALKARL 142
Query: 893 SQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKL 952
+A N + + S + + +E EK E A+A LA
Sbjct: 143 KAAKAQEAVNTSLGSASTESATDSFERIE---EKIEEREARADAAAE---------LASA 190
Query: 953 LSLKQQLSAL 962
L +L A
Sbjct: 191 QDLDAKLEAA 200
Score = 30.4 bits (69), Expect = 4.5
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 24/130 (18%)
Query: 1022 EKKQAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK--- 1078
E E E LE + Q + V Q++ + E K+ LK + A+K
Sbjct: 92 EIATLE---KQAEALETQLTQQRSAVEQLRKQ-LAALE-----TKIQQLKAKKTALKARL 142
Query: 1079 SQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKL 1138
+A N + + S + + +E EK E A+A LA
Sbjct: 143 KAAKAQEAVNTSLGSASTESATDSFERIE---EKIEEREARADAAAE---------LASA 190
Query: 1139 LSLKQQLSAL 1148
L +L A
Sbjct: 191 QDLDAKLEAA 200
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 30.6 bits (69), Expect = 6.3
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 589 EYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL-ATKNN 647
E+L E K SKS + + +D G FR++ L Q F++ +L A K
Sbjct: 271 EFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQ-LKFTFNNLKACKIA 329
Query: 648 SELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKA---K 704
E N +N+ F Y S + L L+N++L L+K
Sbjct: 330 RE------NMLNKLTYF----YSS----LDQFD-----LNLLNKDLENIEFSLEKEYYDS 370
Query: 705 LRDGIRYILNISR 717
+ I + LNI +
Sbjct: 371 FLEKIAFDLNIPQ 383
>gnl|CDD|218746 pfam05784, Herpes_UL82_83, Betaherpesvirus UL82/83 protein N
terminus. This family represents the N terminal region
of the Betaherpesvirus UL82 and UL83 proteins. As
viruses are reliant upon their host cell to serve as
proper environments for their replication, many have
evolved mechanisms to alter intracellular conditions to
suit their own needs. Human cytomegalovirus induces
quiescent cells to enter the cell cycle and then arrests
them in late G(1), before they enter the S phase, a cell
cycle compartment that is presumably favourable for
viral replication. The protein product of the human
cytomegalovirus UL82 gene, pp71, can accelerate the
movement of cells through the G(1) phase of the cell
cycle. This activity would help infected cells reach the
late G(1) arrest point sooner and thus may stimulate the
infectious cycle. pp71 also induces DNA synthesis in
quiescent cells, but a pp71 mutant protein that is
unable to induce quiescent cells to enter the cell cycle
still retains the ability to accelerate the G(1) phase.
Thus, the mechanism through which pp71 accelerates G(1)
cell cycle progression appears to be distinct from the
one that it employs to induce quiescent cells to exit
G(0) and subsequently enter the S phase.
Length = 346
Score = 30.4 bits (69), Expect = 6.4
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 225 QPESKAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQPNENNIL 284
Q S ++P + DL K + +E++ VA S PL + P+ L
Sbjct: 47 QETSSSQPPYRDDTDLQIKFTYIDGQELDNLTVAVHNPSDRPLPPSSEPL--------SL 98
Query: 285 ITSALPYVN-NVPHL 298
ALP VP L
Sbjct: 99 YVFALPLDPVPVPPL 113
>gnl|CDD|198309 cd03200, GST_C_AIMP2, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 2 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP2, also called p38 or JTV-1, contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It plays an important role
in the control of cell fate via antiproliferative (by
enhancing the TGF-beta signal) and proapoptotic
(activation of p53 and TNF-alpha) activities. Its roles
in the control of cell proliferation and death suggest
that it is a potent tumor suppressor. AIMP2 heterozygous
mice with lower than normal expression of AIMP2 show
high susceptibility to tumorigenesis. AIMP2 is also a
substrate of Parkin, an E3 ubiquitin ligase that is
involved in the ubiquitylation and proteasomal
degradation of its substrates. Mutations in the Parkin
gene is found in 50% of patients with
autosomal-recessive early-onset parkinsonism. The
accumulation of AIMP2, due to impaired Parkin function,
may play a role in the pathogenesis of Parkinson's
disease.
Length = 96
Score = 28.3 bits (63), Expect = 6.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 109 LNVLNEAISNS-FLIENSTTVADICIWTCV 137
L LN A+ S +L+ + TVADI +W+ V
Sbjct: 44 LRALNSALGRSPWLVGSEPTVADIALWSAV 73
>gnl|CDD|146160 pfam03374, ANT, Phage antirepressor protein KilAC domain. This
domain was called the KilAC domain by Iyer and
colleagues.
Length = 112
Score = 28.7 bits (65), Expect = 7.3
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQ 1144
LE ++ + A A A D + +AKLL + +
Sbjct: 1 LEQQLAEAAPKAEYADAIAASDGLVLVGQIAKLLGIGEN 39
Score = 28.7 bits (65), Expect = 7.5
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQ 958
LE ++ + A A A D V +AKLL + +
Sbjct: 1 LEQQLAEAAPKAEYADAIAASDGLVLVGQIAKLLGIGEN 39
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 30.5 bits (70), Expect = 7.7
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 40/102 (39%)
Query: 568 FPATLVAAG-DQ-----YTKVNHIMATEYLN---Y-----------EDG-KFSKSRGTGV 606
FPA + G DQ YT ++T + Y EDG K SKS G
Sbjct: 544 FPADFIVEGIDQTRGWFYTL--LALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLG--- 598
Query: 607 FGNNAKDTGLP--------ADIFRFYLLYVRPENQDTSFSWQ 640
N D P AD R+YLL +D FS
Sbjct: 599 ---NYVD---PFEVFDKYGADALRWYLLSSSAPWEDLRFSED 634
>gnl|CDD|216432 pfam01322, Cytochrom_C_2, Cytochrome C'.
Length = 121
Score = 28.7 bits (65), Expect = 8.0
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 899 TDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQ 958
+D T A P+ ++ AD KA L A+A DLA +LK
Sbjct: 58 SDKGDTEAKPAIWEDPADFKAK---AAAFQAAAAELAAAAK------TGDLA---ALKAA 105
Query: 959 LSALTGT 965
A+ G+
Sbjct: 106 FGAVGGS 112
>gnl|CDD|236679 PRK10387, PRK10387, glutaredoxin 2; Provisional.
Length = 210
Score = 29.5 bits (67), Expect = 9.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 25 KLDVELV-----DVAD-ARLLLSKTVPVLELDDGS 53
+ VEL+ D A R++ K VP+L+ DDGS
Sbjct: 23 NIPVELIVLANDDEATPIRMIGQKQVPILQKDDGS 57
>gnl|CDD|106976 PHA00667, PHA00667, hypothetical protein.
Length = 158
Score = 28.8 bits (63), Expect = 9.3
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 21/129 (16%)
Query: 1027 EITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL-----EAMKSQQ 1081
+ S++ +L AA+ ++ ++ P + S +K+ + +
Sbjct: 8 QENTSALRDLIAAIKAGVPTTAAQVAAVAAEA---PAAQQEASTEKKPRATSAKTTAATA 64
Query: 1082 RAATDANQTSATPSAS-----------DNSADVKALEAEIEKQAEVVRTLKASAGGD-KS 1129
A +A S D D A +A + + A +
Sbjct: 65 PTPPTAEVGAADAPESKAENSAPVQAGDAGQDAAAGDAA-PTYQDTADAVTKLARVKGRD 123
Query: 1130 IFAADLAKL 1138
A L+K
Sbjct: 124 AAVAVLSKF 132
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 30.2 bits (69), Expect = 9.6
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 290 PYVNNVPHLGNIIGCVLS---ADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLT 345
P V+ H+G+ V S D +R+ R+ N + G D+ G TE K + G+
Sbjct: 47 PTVSGSLHIGH----VFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIR 102
Query: 346 P--------RQICDKYFAIHREVYE--W----FEIDFDYFGRTSTPQQTEIVQHLFDRVH 391
++C + + + W +D+ +T +P+ I Q F ++
Sbjct: 103 KDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY 162
Query: 392 KAG 394
K G
Sbjct: 163 KKG 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.127 0.361
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 56,148,087
Number of extensions: 5329421
Number of successful extensions: 4745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4610
Number of HSP's successfully gapped: 219
Length of query: 1175
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1067
Effective length of database: 6,147,370
Effective search space: 6559243790
Effective search space used: 6559243790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (28.8 bits)