Query psy7267
Match_columns 569
No_of_seqs 389 out of 3224
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:19:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00260 dolichyl-phosphate be 100.0 3.3E-36 7.1E-41 316.4 31.1 257 86-353 66-325 (333)
2 KOG2977|consensus 100.0 6E-34 1.3E-38 282.7 22.3 286 56-351 33-320 (323)
3 PLN02726 dolichyl-phosphate be 100.0 3.9E-31 8.4E-36 264.6 25.6 228 88-337 7-236 (243)
4 cd04188 DPG_synthase DPG_synth 100.0 2.6E-30 5.5E-35 252.1 20.9 211 94-323 1-211 (211)
5 KOG2978|consensus 100.0 7.8E-30 1.7E-34 239.7 21.4 227 89-336 2-230 (238)
6 PRK11204 N-glycosyltransferase 100.0 2.1E-28 4.7E-33 263.8 31.6 232 86-353 50-284 (420)
7 PRK14583 hmsR N-glycosyltransf 100.0 6.9E-28 1.5E-32 262.5 31.7 229 88-353 73-305 (444)
8 cd06427 CESA_like_2 CESA_like_ 100.0 6.8E-28 1.5E-32 240.4 21.5 234 90-354 1-236 (241)
9 cd06442 DPM1_like DPM1_like re 100.0 1.1E-27 2.5E-32 233.8 22.6 218 94-335 1-219 (224)
10 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 5.6E-27 1.2E-31 255.2 29.6 232 87-352 46-290 (439)
11 cd06437 CESA_CaSu_A2 Cellulose 100.0 3.9E-27 8.4E-32 233.0 21.7 225 90-347 1-231 (232)
12 PRK10714 undecaprenyl phosphat 99.9 3E-26 6.4E-31 240.3 26.2 213 89-334 5-219 (325)
13 cd02520 Glucosylceramide_synth 99.9 2E-26 4.4E-31 222.7 20.7 187 90-346 1-194 (196)
14 TIGR03472 HpnI hopanoid biosyn 99.9 8.6E-26 1.9E-30 240.8 25.7 205 88-317 39-250 (373)
15 cd06421 CESA_CelA_like CESA_Ce 99.9 1.8E-25 3.8E-30 219.5 22.0 226 90-349 1-231 (234)
16 PRK11498 bcsA cellulose syntha 99.9 2.8E-24 6.2E-29 247.0 30.3 228 86-351 256-491 (852)
17 cd06435 CESA_NdvC_like NdvC_li 99.9 5.6E-25 1.2E-29 217.3 20.6 224 93-352 1-232 (236)
18 TIGR03030 CelA cellulose synth 99.9 2.6E-24 5.5E-29 246.9 29.1 234 86-352 127-381 (713)
19 cd06439 CESA_like_1 CESA_like_ 99.9 1.3E-24 2.9E-29 216.6 21.8 224 86-350 25-250 (251)
20 TIGR03469 HonB hopene-associat 99.9 4.6E-24 1E-28 228.4 26.5 204 86-313 36-255 (384)
21 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 1.2E-24 2.5E-29 224.5 19.8 216 93-318 1-223 (299)
22 COG1215 Glycosyltransferases, 99.9 1.1E-23 2.3E-28 227.1 27.3 231 89-354 53-290 (439)
23 cd02525 Succinoglycan_BP_ExoA 99.9 1.1E-23 2.4E-28 208.0 22.4 228 91-354 1-233 (249)
24 cd04192 GT_2_like_e Subfamily 99.9 1.4E-23 3E-28 204.7 22.2 221 94-347 1-229 (229)
25 PF13641 Glyco_tranf_2_3: Glyc 99.9 1.2E-24 2.5E-29 213.6 11.8 223 90-347 1-228 (228)
26 cd06434 GT2_HAS Hyaluronan syn 99.9 2.1E-23 4.6E-28 205.4 17.6 220 91-349 1-233 (235)
27 cd06913 beta3GnTL1_like Beta 1 99.9 6.3E-23 1.4E-27 201.1 20.8 204 94-323 1-215 (219)
28 cd04179 DPM_DPG-synthase_like 99.9 1.9E-23 4E-28 197.8 16.3 185 94-302 1-185 (185)
29 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 2.6E-23 5.6E-28 199.8 17.1 191 90-314 1-195 (202)
30 PRK13915 putative glucosyl-3-p 99.9 1E-22 2.2E-27 211.9 21.2 226 88-341 29-263 (306)
31 PRK10073 putative glycosyl tra 99.9 7.1E-23 1.5E-27 215.0 19.6 206 89-322 5-221 (328)
32 PRK14716 bacteriophage N4 adso 99.9 2.3E-22 4.9E-27 221.2 23.8 236 87-348 63-323 (504)
33 cd04195 GT2_AmsE_like GT2_AmsE 99.9 5.6E-23 1.2E-27 197.6 16.5 192 93-314 1-195 (201)
34 cd04196 GT_2_like_d Subfamily 99.9 3.4E-22 7.4E-27 192.9 16.4 194 93-314 1-197 (214)
35 cd04187 DPM1_like_bac Bacteria 99.9 1.5E-21 3.2E-26 185.4 19.5 169 94-292 1-169 (181)
36 PRK10063 putative glycosyl tra 99.9 6.8E-21 1.5E-25 192.5 24.1 191 90-318 1-194 (248)
37 cd04190 Chitin_synth_C C-termi 99.9 4.7E-22 1E-26 199.7 15.5 201 94-349 1-242 (244)
38 cd06433 GT_2_WfgS_like WfgS an 99.9 9.8E-22 2.1E-26 186.8 16.3 188 93-316 1-190 (202)
39 cd06438 EpsO_like EpsO protein 99.9 1E-21 2.2E-26 187.7 14.8 176 94-298 1-183 (183)
40 cd04191 Glucan_BSP_ModH Glucan 99.9 2.1E-20 4.6E-25 189.6 23.7 230 92-350 1-253 (254)
41 cd04185 GT_2_like_b Subfamily 99.9 5.5E-21 1.2E-25 184.4 17.8 166 94-319 1-172 (202)
42 PRK11234 nfrB bacteriophage N4 99.9 5.1E-20 1.1E-24 210.2 27.4 240 82-348 55-328 (727)
43 PRK10018 putative glycosyl tra 99.9 2.3E-20 5E-25 191.9 21.6 110 89-208 4-113 (279)
44 PF00535 Glycos_transf_2: Glyc 99.9 1.9E-21 4.2E-26 178.2 11.2 167 93-283 1-168 (169)
45 cd06420 GT2_Chondriotin_Pol_N 99.9 2.1E-20 4.6E-25 176.6 17.5 168 94-312 1-172 (182)
46 cd02526 GT2_RfbF_like RfbF is 99.8 1.3E-20 2.8E-25 185.8 15.4 193 94-320 1-204 (237)
47 PRK05454 glucosyltransferase M 99.8 2.6E-19 5.6E-24 203.5 27.8 235 86-353 120-381 (691)
48 cd04186 GT_2_like_c Subfamily 99.8 4.5E-20 9.8E-25 170.2 17.1 159 94-317 1-162 (166)
49 cd02522 GT_2_like_a GT_2_like_ 99.8 2.5E-19 5.4E-24 174.5 21.1 178 92-311 1-178 (221)
50 cd06436 GlcNAc-1-P_transferase 99.8 1E-19 2.2E-24 175.7 16.0 162 94-283 1-178 (191)
51 TIGR01556 rhamnosyltran L-rham 99.8 2.4E-19 5.2E-24 183.0 18.7 191 97-319 1-200 (281)
52 PRK15489 nfrB bacteriophage N4 99.8 1.9E-18 4.1E-23 195.5 24.9 238 86-349 67-337 (703)
53 cd06423 CESA_like CESA_like is 99.8 9.1E-20 2E-24 167.0 10.7 168 94-283 1-169 (180)
54 COG1216 Predicted glycosyltran 99.8 7E-19 1.5E-23 182.7 16.9 212 89-320 2-220 (305)
55 PF10111 Glyco_tranf_2_2: Glyc 99.8 2E-17 4.3E-22 170.0 20.4 202 93-317 1-219 (281)
56 COG0463 WcaA Glycosyltransfera 99.7 1.6E-16 3.5E-21 145.5 13.1 106 89-205 2-107 (291)
57 cd02511 Beta4Glucosyltransfera 99.7 3.7E-16 8.1E-21 155.2 13.6 99 91-208 1-99 (229)
58 cd00761 Glyco_tranf_GTA_type G 99.6 3.6E-14 7.8E-19 126.7 15.3 151 94-309 1-154 (156)
59 KOG3736|consensus 99.2 5.7E-12 1.2E-16 139.3 5.7 206 87-316 139-365 (578)
60 KOG3737|consensus 99.2 9.1E-12 2E-16 129.1 6.5 212 87-315 152-382 (603)
61 KOG3738|consensus 99.2 1.6E-11 3.5E-16 127.7 7.0 212 88-315 122-342 (559)
62 PF13506 Glyco_transf_21: Glyc 99.1 1.5E-09 3.2E-14 104.5 15.0 143 158-320 5-154 (175)
63 KOG2547|consensus 99.0 9.3E-10 2E-14 114.2 11.0 200 87-312 82-289 (431)
64 PF13632 Glyco_trans_2_3: Glyc 98.9 1.4E-08 3.1E-13 97.4 12.5 140 183-348 1-143 (193)
65 PLN02893 Cellulose synthase-li 98.9 1.4E-07 3.1E-12 107.2 21.9 162 168-352 282-498 (734)
66 cd02514 GT13_GLCNAC-TI GT13_GL 98.7 5.6E-08 1.2E-12 102.3 11.5 106 92-208 2-128 (334)
67 COG2943 MdoH Membrane glycosyl 98.7 2.3E-06 5E-11 92.7 21.5 210 90-320 144-379 (736)
68 PF03142 Chitin_synth_2: Chiti 98.7 1.2E-06 2.6E-11 97.1 19.0 231 89-350 24-376 (527)
69 PF13712 Glyco_tranf_2_5: Glyc 98.4 3.5E-07 7.6E-12 91.1 6.8 145 164-321 38-199 (217)
70 PF13704 Glyco_tranf_2_4: Glyc 98.0 2E-05 4.4E-10 67.7 6.9 81 99-195 1-86 (97)
71 PLN02190 cellulose synthase-li 97.7 0.00071 1.5E-08 77.4 16.4 116 88-208 91-315 (756)
72 PLN02195 cellulose synthase A 97.7 0.00074 1.6E-08 79.0 16.7 41 168-208 437-482 (977)
73 PLN02189 cellulose synthase 97.7 0.00087 1.9E-08 78.8 16.7 52 157-208 500-561 (1040)
74 cd00899 b4GalT Beta-4-Galactos 97.6 0.00054 1.2E-08 68.2 11.8 148 91-313 3-158 (219)
75 PLN02638 cellulose synthase A 97.6 0.0015 3.3E-08 77.1 16.1 51 158-208 519-579 (1079)
76 KOG2571|consensus 97.3 0.0009 2E-08 77.6 9.4 155 167-347 425-596 (862)
77 COG4092 Predicted glycosyltran 97.3 0.02 4.3E-07 58.1 17.6 201 90-305 2-216 (346)
78 PF03452 Anp1: Anp1; InterPro 97.2 0.0021 4.6E-08 65.8 10.6 111 87-203 22-166 (269)
79 PF03071 GNT-I: GNT-I family; 97.2 0.0029 6.4E-08 68.8 11.5 108 88-206 91-217 (434)
80 PLN02248 cellulose synthase-li 97.1 0.0098 2.1E-07 70.6 16.0 40 168-207 603-647 (1135)
81 PF05679 CHGN: Chondroitin N-a 97.1 0.014 3E-07 65.4 16.4 116 87-207 244-368 (499)
82 PLN02400 cellulose synthase 97.0 0.01 2.2E-07 70.4 14.3 52 157-208 525-586 (1085)
83 PLN02915 cellulose synthase A 96.5 0.043 9.3E-07 65.1 14.6 41 168-208 472-517 (1044)
84 TIGR02460 osmo_MPGsynth mannos 96.5 0.087 1.9E-06 55.5 15.2 105 90-207 50-185 (381)
85 PF06306 CgtA: Beta-1,4-N-acet 96.4 0.012 2.5E-07 61.3 8.3 98 91-200 88-195 (347)
86 KOG3916|consensus 96.3 0.038 8.2E-07 57.9 11.7 152 88-313 149-307 (372)
87 PRK14503 mannosyl-3-phosphogly 96.3 0.12 2.6E-06 54.7 14.9 105 90-207 51-186 (393)
88 PF09488 Osmo_MPGsynth: Mannos 96.2 0.046 1E-06 57.8 11.7 105 90-207 50-185 (381)
89 PF11735 CAP59_mtransfer: Cryp 96.1 0.078 1.7E-06 53.8 12.4 109 93-206 3-137 (241)
90 PLN02436 cellulose synthase A 95.9 0.076 1.6E-06 63.2 12.5 41 168-208 550-595 (1094)
91 PF03552 Cellulose_synt: Cellu 95.0 0.063 1.4E-06 61.7 8.0 52 157-208 168-229 (720)
92 KOG3588|consensus 94.7 0.33 7.1E-06 51.6 11.4 188 88-313 227-430 (494)
93 PF11316 Rhamno_transf: Putati 94.6 0.17 3.7E-06 51.1 9.1 89 108-207 47-141 (234)
94 cd06915 NTP_transferase_WcbM_l 94.0 0.54 1.2E-05 45.6 10.9 99 95-207 23-121 (223)
95 PF12804 NTP_transf_3: MobA-li 93.6 0.38 8.2E-06 44.6 8.7 93 96-208 19-114 (160)
96 PRK14502 bifunctional mannosyl 93.6 0.4 8.6E-06 55.3 10.3 105 90-207 55-190 (694)
97 PF13733 Glyco_transf_7N: N-te 93.5 0.16 3.4E-06 47.0 5.7 78 88-195 45-126 (136)
98 cd02508 ADP_Glucose_PP ADP-glu 93.4 1.6 3.4E-05 42.3 13.1 155 95-312 23-191 (200)
99 PF11397 GlcNAc: Glycosyltrans 93.3 2.3 5.1E-05 45.4 15.0 110 92-208 2-144 (343)
100 cd02540 GT2_GlmU_N_bac N-termi 93.2 0.73 1.6E-05 45.2 10.4 95 95-207 20-117 (229)
101 PLN02917 CMP-KDO synthetase 92.9 2.7 5.9E-05 43.8 14.6 52 156-208 108-164 (293)
102 TIGR00466 kdsB 3-deoxy-D-manno 92.5 2.1 4.6E-05 43.1 12.8 28 180-207 87-115 (238)
103 cd04181 NTP_transferase NTP_tr 92.4 0.84 1.8E-05 44.2 9.5 99 95-207 23-121 (217)
104 cd04182 GT_2_like_f GT_2_like_ 92.1 0.96 2.1E-05 42.5 9.4 52 156-207 63-118 (186)
105 cd02516 CDP-ME_synthetase CDP- 90.5 3.9 8.6E-05 39.8 12.1 98 95-207 22-123 (218)
106 PRK00317 mobA molybdopterin-gu 90.3 4.2 9.1E-05 39.0 11.9 51 157-207 63-116 (193)
107 cd02503 MobA MobA catalyzes th 90.2 2.1 4.6E-05 40.4 9.7 87 96-205 21-109 (181)
108 PRK14352 glmU bifunctional N-a 90.1 2.4 5.2E-05 47.1 11.4 98 95-208 26-127 (482)
109 PLN02458 transferase, transfer 90.0 1.8 4E-05 45.6 9.5 101 89-200 111-222 (346)
110 PF01697 Glyco_transf_92: Glyc 89.9 1.1 2.5E-05 45.5 8.0 104 92-208 3-135 (285)
111 cd00218 GlcAT-I Beta1,3-glucur 89.0 3.8 8.3E-05 41.1 10.6 99 90-200 1-115 (223)
112 TIGR03310 matur_ygfJ molybdenu 88.7 2.8 6E-05 39.7 9.2 95 96-207 20-117 (188)
113 TIGR03202 pucB xanthine dehydr 87.9 5.1 0.00011 38.3 10.6 95 100-207 24-123 (190)
114 PRK14356 glmU bifunctional N-a 87.7 12 0.00025 41.1 14.5 94 95-206 27-124 (456)
115 PF01762 Galactosyl_T: Galacto 87.6 5.4 0.00012 38.6 10.6 164 126-311 19-193 (195)
116 PRK05450 3-deoxy-manno-octulos 87.4 12 0.00026 37.1 13.3 28 180-207 90-118 (245)
117 TIGR02665 molyb_mobA molybdopt 86.8 4.4 9.6E-05 38.4 9.4 51 157-207 62-115 (186)
118 PRK13385 2-C-methyl-D-erythrit 86.2 7.9 0.00017 38.4 11.2 95 100-208 28-126 (230)
119 cd02513 CMP-NeuAc_Synthase CMP 86.2 11 0.00025 36.5 12.2 41 167-207 79-125 (223)
120 cd06425 M1P_guanylylT_B_like_N 86.1 3.6 7.8E-05 40.7 8.6 99 95-208 25-127 (233)
121 PF04666 Glyco_transf_54: N-Ac 86.0 9.7 0.00021 40.0 12.0 114 89-208 51-197 (297)
122 cd02518 GT2_SpsF SpsF is a gly 85.8 7.2 0.00016 38.6 10.7 97 95-207 18-115 (233)
123 cd04189 G1P_TT_long G1P_TT_lon 85.4 7.2 0.00016 38.4 10.4 99 95-207 25-123 (236)
124 COG2068 Uncharacterized MobA-r 85.3 6.1 0.00013 39.0 9.4 94 98-207 27-124 (199)
125 KOG3917|consensus 85.0 5.2 0.00011 40.1 8.7 151 88-312 72-227 (310)
126 PF02709 Glyco_transf_7C: N-te 84.8 0.85 1.8E-05 38.1 2.9 44 268-313 19-66 (78)
127 PRK14355 glmU bifunctional N-a 84.4 6.1 0.00013 43.5 10.3 96 95-207 25-123 (459)
128 PF03214 RGP: Reversibly glyco 84.3 1.5 3.3E-05 46.2 5.0 107 91-208 9-119 (348)
129 PRK13368 3-deoxy-manno-octulos 84.0 18 0.00038 35.8 12.5 41 166-207 75-116 (238)
130 cd06428 M1P_guanylylT_A_like_N 83.7 6.5 0.00014 39.6 9.4 101 95-207 25-128 (257)
131 TIGR03552 F420_cofC 2-phospho- 83.3 8.5 0.00018 37.0 9.6 51 156-207 65-118 (195)
132 PF00483 NTP_transferase: Nucl 83.1 3.7 8E-05 40.7 7.2 101 95-208 24-129 (248)
133 PF09258 Glyco_transf_64: Glyc 82.5 1.2 2.5E-05 45.5 3.3 103 92-209 1-104 (247)
134 cd06422 NTP_transferase_like_1 82.3 8.3 0.00018 37.7 9.2 97 95-206 24-121 (221)
135 TIGR03584 PseF pseudaminic aci 82.2 23 0.0005 35.2 12.5 43 165-207 75-122 (222)
136 PRK02726 molybdopterin-guanine 82.1 12 0.00027 36.3 10.4 52 156-207 67-120 (200)
137 PF05212 DUF707: Protein of un 82.1 44 0.00095 34.9 14.4 198 87-319 38-250 (294)
138 PRK14360 glmU bifunctional N-a 82.0 8.2 0.00018 42.2 10.0 97 95-208 23-122 (450)
139 PRK09451 glmU bifunctional N-a 81.7 9.3 0.0002 42.0 10.4 95 95-207 27-123 (456)
140 PRK14357 glmU bifunctional N-a 81.0 11 0.00023 41.3 10.5 93 95-207 22-116 (448)
141 KOG1476|consensus 80.5 20 0.00044 37.8 11.4 100 89-200 86-201 (330)
142 TIGR01173 glmU UDP-N-acetylglu 80.3 6 0.00013 43.1 8.2 95 95-207 22-118 (451)
143 TIGR00453 ispD 2-C-methyl-D-er 80.2 20 0.00044 34.9 11.1 41 167-207 76-118 (217)
144 COG1212 KdsB CMP-2-keto-3-deox 80.1 24 0.00052 35.6 11.4 104 91-208 3-120 (247)
145 PRK15480 glucose-1-phosphate t 79.4 15 0.00032 38.3 10.4 97 95-207 28-128 (292)
146 COG1209 RfbA dTDP-glucose pyro 78.9 87 0.0019 32.6 15.6 192 95-321 25-223 (286)
147 KOG1413|consensus 78.9 6.7 0.00015 41.8 7.5 113 87-205 64-192 (411)
148 cd02523 PC_cytidylyltransferas 78.0 6.9 0.00015 38.5 7.1 90 95-202 23-114 (229)
149 PRK14353 glmU bifunctional N-a 77.9 11 0.00024 41.1 9.4 97 95-207 27-126 (446)
150 PRK14358 glmU bifunctional N-a 77.7 13 0.00028 41.5 9.9 96 95-208 29-127 (481)
151 PRK00155 ispD 2-C-methyl-D-ery 77.7 26 0.00056 34.5 11.1 42 167-208 81-124 (227)
152 cd06426 NTP_transferase_like_2 77.5 12 0.00026 36.3 8.6 96 95-207 23-120 (220)
153 cd02509 GDP-M1P_Guanylyltransf 77.4 28 0.0006 35.8 11.6 96 95-203 26-126 (274)
154 COG1211 IspD 4-diphosphocytidy 77.4 33 0.00072 34.7 11.7 95 99-207 29-127 (230)
155 KOG4179|consensus 77.1 2 4.3E-05 46.4 3.0 109 90-204 3-134 (568)
156 cd02517 CMP-KDO-Synthetase CMP 76.7 26 0.00056 34.6 10.9 93 95-207 20-117 (239)
157 cd02538 G1P_TT_short G1P_TT_sh 75.2 21 0.00046 35.4 9.8 100 95-207 25-125 (240)
158 PRK14354 glmU bifunctional N-a 75.1 14 0.00029 40.6 9.1 94 95-207 24-120 (458)
159 TIGR01207 rmlA glucose-1-phosp 75.0 23 0.00051 36.7 10.3 98 95-207 24-124 (286)
160 PLN03153 hypothetical protein; 74.3 20 0.00042 40.4 9.8 112 166-313 188-313 (537)
161 PLN03180 reversibly glycosylat 73.8 2.3 5E-05 45.0 2.5 87 89-196 10-109 (346)
162 TIGR01208 rmlA_long glucose-1- 73.5 21 0.00046 37.7 9.8 99 95-207 24-123 (353)
163 PF02434 Fringe: Fringe-like; 73.1 11 0.00023 38.5 7.2 113 179-317 85-207 (252)
164 COG1207 GlmU N-acetylglucosami 72.0 40 0.00087 37.1 11.3 173 129-321 47-228 (460)
165 cd04198 eIF-2B_gamma_N The N-t 71.7 52 0.0011 32.2 11.5 97 95-207 25-126 (214)
166 TIGR00454 conserved hypothetic 71.7 25 0.00055 33.9 9.1 95 95-208 21-117 (183)
167 cd02541 UGPase_prokaryotic Pro 71.3 27 0.00059 35.2 9.7 52 156-207 94-147 (267)
168 PF09837 DUF2064: Uncharacteri 71.1 24 0.00052 31.9 8.2 76 127-208 10-88 (122)
169 PRK14489 putative bifunctional 70.7 21 0.00047 38.3 9.2 42 166-207 78-120 (366)
170 PF01644 Chitin_synth_1: Chiti 69.6 46 0.001 31.9 10.0 43 163-205 117-163 (163)
171 cd06431 GT8_LARGE_C LARGE cata 68.5 46 0.00099 34.6 10.7 107 91-207 2-123 (280)
172 TIGR01099 galU UTP-glucose-1-p 68.3 34 0.00074 34.3 9.6 52 156-207 94-147 (260)
173 cd02524 G1P_cytidylyltransfera 67.9 25 0.00055 35.3 8.5 42 165-207 101-143 (253)
174 COG1213 Predicted sugar nucleo 65.1 8.1 0.00017 39.1 4.1 90 101-205 30-121 (239)
175 cd04183 GT2_BcE_like GT2_BcbE_ 63.9 52 0.0011 32.2 9.7 96 95-205 23-121 (231)
176 TIGR02623 G1P_cyt_trans glucos 62.4 49 0.0011 33.4 9.4 43 164-207 101-143 (254)
177 COG0746 MobA Molybdopterin-gua 62.3 36 0.00078 33.3 8.1 53 156-208 61-115 (192)
178 TIGR01105 galF UTP-glucose-1-p 62.2 50 0.0011 34.5 9.6 51 156-207 98-156 (297)
179 COG2266 GTP:adenosylcobinamide 59.8 92 0.002 30.3 10.0 70 128-206 42-112 (177)
180 PF02348 CTP_transf_3: Cytidyl 59.2 1E+02 0.0022 29.8 10.7 89 103-208 25-117 (217)
181 COG1208 GCD1 Nucleoside-diphos 58.9 91 0.002 33.5 11.1 98 95-208 26-125 (358)
182 PLN02241 glucose-1-phosphate a 57.0 50 0.0011 36.3 9.0 102 95-207 28-147 (436)
183 PRK05293 glgC glucose-1-phosph 55.7 54 0.0012 35.0 8.8 101 95-207 28-142 (380)
184 PF11051 Mannosyl_trans3: Mann 53.6 85 0.0018 32.3 9.5 19 175-193 85-103 (271)
185 PLN03183 acetylglucosaminyltra 52.4 3.3E+02 0.0071 30.2 14.2 95 86-193 74-186 (421)
186 PF13896 Glyco_transf_49: Glyc 51.4 16 0.00035 38.6 3.8 41 168-208 115-155 (317)
187 PLN02728 2-C-methyl-D-erythrit 51.3 1.4E+02 0.003 30.5 10.5 74 129-208 70-146 (252)
188 PRK09382 ispDF bifunctional 2- 51.3 1.1E+02 0.0024 33.3 10.2 92 100-207 31-123 (378)
189 PF03360 Glyco_transf_43: Glyc 47.7 33 0.00072 34.1 5.1 69 127-200 10-97 (207)
190 PRK15171 lipopolysaccharide 1, 47.5 1.3E+02 0.0029 32.0 10.0 106 90-204 24-143 (334)
191 cd04197 eIF-2B_epsilon_N The N 47.3 1.2E+02 0.0026 29.6 9.1 101 95-207 25-129 (217)
192 PRK10122 GalU regulator GalF; 47.1 1.6E+02 0.0036 30.6 10.6 51 156-207 98-156 (297)
193 cd00505 Glyco_transf_8 Members 44.7 1.3E+02 0.0028 30.1 9.1 95 100-204 11-118 (246)
194 TIGR02091 glgC glucose-1-phosp 44.0 70 0.0015 33.8 7.4 99 95-207 23-136 (361)
195 PRK13389 UTP--glucose-1-phosph 43.0 2E+02 0.0042 30.1 10.4 102 95-207 33-161 (302)
196 PF05045 RgpF: Rhamnan synthes 42.1 5.6E+02 0.012 29.0 18.8 94 88-194 263-362 (498)
197 PF09886 DUF2113: Uncharacteri 41.2 1.7E+02 0.0036 28.8 8.7 94 98-208 78-185 (188)
198 cd04194 GT8_A4GalT_like A4GalT 40.6 1.5E+02 0.0033 29.4 8.9 76 126-203 29-117 (248)
199 PRK00576 molybdopterin-guanine 40.2 2.1E+02 0.0045 26.9 9.3 51 157-207 47-102 (178)
200 PF06033 DUF918: Nucleopolyhed 40.1 13 0.00028 35.0 0.9 29 495-523 18-46 (153)
201 PRK14490 putative bifunctional 39.3 1.8E+02 0.0038 31.3 9.6 50 156-205 233-284 (369)
202 TIGR01479 GMP_PMI mannose-1-ph 39.0 2.1E+02 0.0046 31.9 10.4 98 95-205 26-129 (468)
203 PRK00560 molybdopterin-guanine 38.8 3E+02 0.0066 26.5 10.4 38 165-202 75-113 (196)
204 PF02257 RFX_DNA_binding: RFX 37.7 6.2 0.00013 33.7 -1.5 39 426-465 35-73 (85)
205 PF05060 MGAT2: N-acetylglucos 37.4 1.3E+02 0.0028 32.5 8.0 107 89-206 30-192 (356)
206 PF01128 IspD: 2-C-methyl-D-er 36.4 2.4E+02 0.0052 28.2 9.4 91 100-207 26-119 (221)
207 PRK14359 glmU bifunctional N-a 36.1 1.6E+02 0.0034 31.8 8.8 89 95-202 24-115 (430)
208 PF04028 DUF374: Domain of unk 35.8 1.5E+02 0.0032 24.6 6.4 61 127-192 9-69 (74)
209 PF07507 WavE: WavE lipopolysa 35.1 1.3E+02 0.0028 31.9 7.5 38 170-207 85-122 (311)
210 cd06432 GT8_HUGT1_C_like The C 34.7 4.1E+02 0.0089 26.9 10.9 93 102-204 13-118 (248)
211 PRK00725 glgC glucose-1-phosph 33.9 2.1E+02 0.0045 31.3 9.2 99 95-207 40-154 (425)
212 PF02485 Branch: Core-2/I-Bran 33.1 3.3E+02 0.0072 26.9 9.9 105 92-208 1-115 (244)
213 PF01501 Glyco_transf_8: Glyco 30.6 65 0.0014 31.3 4.2 75 126-203 29-120 (250)
214 PRK02862 glgC glucose-1-phosph 30.6 2E+02 0.0042 31.6 8.4 101 95-207 28-141 (429)
215 PF15486 DUF4644: Domain of un 30.1 32 0.00069 32.0 1.7 36 415-450 89-124 (161)
216 PRK00844 glgC glucose-1-phosph 30.1 1.8E+02 0.004 31.5 8.0 99 95-207 30-142 (407)
217 COG1210 GalU UDP-glucose pyrop 28.7 2.4E+02 0.0053 29.5 7.9 54 155-208 97-152 (291)
218 PHA01631 hypothetical protein 27.7 62 0.0013 31.1 3.2 63 127-196 17-87 (176)
219 TIGR02092 glgD glucose-1-phosp 26.7 1.5E+02 0.0034 31.4 6.6 101 95-207 27-139 (369)
220 COG1861 SpsF Spore coat polysa 26.4 4.1E+02 0.0089 27.0 8.8 98 94-207 21-119 (241)
221 cd06430 GT8_like_2 GT8_like_2 26.0 8E+02 0.017 25.9 13.2 106 92-207 3-122 (304)
222 TIGR00334 5S_RNA_mat_M5 ribonu 25.6 1.9E+02 0.004 28.2 6.1 64 129-204 4-69 (174)
223 PF13905 Thioredoxin_8: Thiore 25.0 2.3E+02 0.0049 23.3 6.1 65 122-192 29-94 (95)
224 PF10686 DUF2493: Protein of u 24.1 1.7E+02 0.0038 23.9 4.9 53 99-165 14-66 (71)
225 PF09949 DUF2183: Uncharacteri 24.1 2.6E+02 0.0056 24.5 6.3 35 122-160 61-95 (100)
226 COG0113 HemB Delta-aminolevuli 23.0 2.4E+02 0.0053 29.8 6.8 77 97-185 95-193 (330)
227 cd02507 eIF-2B_gamma_N_like Th 22.9 2E+02 0.0043 28.1 6.1 97 95-204 25-125 (216)
228 PLN03181 glycosyltransferase; 22.4 1.1E+03 0.023 26.4 11.6 30 167-196 184-215 (453)
229 cd02968 SCO SCO (an acronym fo 22.2 4.9E+02 0.011 22.9 8.1 98 91-193 23-136 (142)
230 TIGR03291 methan_mark_17 putat 20.6 6.2E+02 0.013 24.9 8.6 27 180-206 157-183 (185)
No 1
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=100.00 E-value=3.3e-36 Score=316.42 Aligned_cols=257 Identities=49% Similarity=0.856 Sum_probs=224.3
Q ss_pred CCCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhh--CCCeEEEEEcC
Q psy7267 86 DEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC--GEDIVRGLKLL 163 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~--~~~~V~vi~~~ 163 (569)
....|.+|||||+|||++.|+++|+++.+++.+..-++|..++||+||||||+|+|.++++++.+++ ++.+++++.++
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 4567889999999999999999999999887642223455579999999999999999999987764 33569999999
Q ss_pred CCCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc-cchhh
Q psy7267 164 KNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL-ANVQR 242 (569)
Q Consensus 164 ~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~-~~~~~ 242 (569)
+|.|++.|+|.|+++|+||+|+++|+|+.++|++++++++.+.+.. .++.|+|+|+|....++ ....+
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~-----------~~~~dvV~GsR~~~~~~~~~~~~ 214 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIE-----------QNGLGIVFGSRNHLVDSDVVAKR 214 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhh-----------ccCCceEEeeccccccCcccccC
Confidence 9999999999999999999999999999999999999999987521 14679999999754332 34566
Q ss_pred HHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecCC
Q psy7267 243 SFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEGS 322 (569)
Q Consensus 243 ~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~GS 322 (569)
++++++.++.++.+.+...+..+.|.+||+++|+|++++++++....++|.+|+|+.+++.+.|+++.++|+.|+++.+|
T Consensus 215 ~~~r~~~~~~~~~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~~~~~~S 294 (333)
T PTZ00260 215 KWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNWTEVEGS 294 (333)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceeeEECCCC
Confidence 78888889988888889999999999999999999999999766667889999999999999999999999999998889
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy7267 323 KIVPVFSWIQMGWDVLNIWLHYTLGLWKIKA 353 (569)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~~ 353 (569)
+...++..+++.+.+++.+..|..|.|.+..
T Consensus 295 k~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 325 (333)
T PTZ00260 295 KLNVISASIQMARDILLVRSFYLLGIWKVKD 325 (333)
T ss_pred eechHHHHHHHHHHHHHHHHHHhcCeeeccC
Confidence 9988999999999999999999999988754
No 2
>KOG2977|consensus
Probab=100.00 E-value=6e-34 Score=282.69 Aligned_cols=286 Identities=52% Similarity=0.860 Sum_probs=246.5
Q ss_pred CCCcccccccccccccccccCcCcCCCCCCCC-CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEe
Q psy7267 56 PFPDIDFLSKGERVFLDVKTGQELEFPSLDDE-PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVS 134 (569)
Q Consensus 56 ~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVD 134 (569)
+.+..... +....+.++.+......|....+ ...-+|||||+|||+..|+..++...+.+++.....|.+.+||+|||
T Consensus 33 ~r~~~e~~-e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvd 111 (323)
T KOG2977|consen 33 PRPALENE-ETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVD 111 (323)
T ss_pred CCcccccc-ceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeC
Confidence 44444443 44455556555444444544443 33479999999999999999999999999885544566899999999
Q ss_pred CCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCcc
Q psy7267 135 DGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYI 214 (569)
Q Consensus 135 DgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~ 214 (569)
|||+|+|.+++-++..++..++++|+...+|+|||+|...|+-+++|+++++.|||....-..++++.+.+.+. .
T Consensus 112 dgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~-----~ 186 (323)
T KOG2977|consen 112 DGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDK-----A 186 (323)
T ss_pred CCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhh-----c
Confidence 99999999999999978777899999999999999999999999999999999999987777788888888763 1
Q ss_pred ccccCCCCCceEEEeeeeeccc-ccchhhHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchh
Q psy7267 215 EDKNNAAGCNGVIVGSRAHLEA-LANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWA 293 (569)
Q Consensus 215 g~~~~~~~g~dvV~G~r~~~~~-~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~ 293 (569)
| +. ..-++++|+|.+++. .....+++.|++++.+++.+.+....+.+.|++|||++|+|.+..++|+...-++|.
T Consensus 187 ~---p~-~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~lv~~~a~rsI~DTQcgfklftR~aa~~if~~lh~e~W~ 262 (323)
T KOG2977|consen 187 G---PG-PRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKLVWIFAIRSIRDTQCGFKLFTRAAARRIFPWLHVERWA 262 (323)
T ss_pred C---CC-CCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHhcCcccccchhHHHhHHHHHHhhcchhheeeee
Confidence 2 11 233699999999877 788899999999999999999999999999999999999999999999888899999
Q ss_pred hchHHHHHHHHcCCCEEEEEEEEEEecCCccchhHHHHHHHHHHHHHHHHhcchhhHH
Q psy7267 294 FDVELLFIAEVLHIPMAEVSVNWTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWKI 351 (569)
Q Consensus 294 ~D~EL~~Ra~~~G~rI~~vPv~~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~i 351 (569)
+|.|+.+.+.+.+..+.++|+.|++-+||++.+++++++|.+++..++.+|..|.|++
T Consensus 263 fdvEll~La~~~~ipi~ei~v~w~EIdgSKi~~~~s~~~m~~dlv~i~v~y~~g~w~~ 320 (323)
T KOG2977|consen 263 FDVELLYLAKRFTIPIKEIPVEWTEIDGSKITPVWSWLQMGSDLVLIRVRYLTGIWKR 320 (323)
T ss_pred ccHHHHHHHHHcCCCcEEeeeEEEEcCCceeehHHHHHHHhhhhheEeeehhcceEEe
Confidence 9999999999999999999999999999999999999999999999999999999864
No 3
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=100.00 E-value=3.9e-31 Score=264.58 Aligned_cols=228 Identities=25% Similarity=0.308 Sum_probs=183.5
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
..|+||||||+|||++.|+.+++++.+++. .++ ++||+||||||+|+|.++++++.++++..+++++.+++|.|
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~----~~~--~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G 80 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQ----DVK--DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLG 80 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhc----cCC--CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCC
Confidence 457899999999999999999988877643 222 78999999999999999999998877556788888899999
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHH
Q psy7267 168 KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRN 247 (569)
Q Consensus 168 ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~ 247 (569)
++.|+|.|+++|+|||++++|+|+.++|++++++++.+.+ ++.++|.|.+.... +....+.+.+.
T Consensus 81 ~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~--------------~~~~~v~g~r~~~~-~~~~~~~~~r~ 145 (243)
T PLN02726 81 LGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRE--------------TGADIVTGTRYVKG-GGVHGWDLRRK 145 (243)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHh--------------cCCcEEEEccccCC-CCcCCccHHHH
Confidence 9999999999999999999999999999999999999876 46799999876432 22223344455
Q ss_pred HhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEec-C-Cccc
Q psy7267 248 ILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIE-G-SKIV 325 (569)
Q Consensus 248 ~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~-G-S~~~ 325 (569)
+.......+.....+.++.+.+|++++|||++++++.......+|.+|+||++++.+.|+++.++|+.+.++. | |+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s~~- 224 (243)
T PLN02726 146 LTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGESKL- 224 (243)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCcccC-
Confidence 5555555565666667888999999999999999994334446788899999999999999999999999887 4 553
Q ss_pred hhHHHHHHHHHH
Q psy7267 326 PVFSWIQMGWDV 337 (569)
Q Consensus 326 ~~~~~~~~~~~~ 337 (569)
.....+++...+
T Consensus 225 ~~~~~~~~~~~~ 236 (243)
T PLN02726 225 GGSEIVQYLKGL 236 (243)
T ss_pred CHHHHHHHHHHH
Confidence 334444444433
No 4
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.97 E-value=2.6e-30 Score=252.07 Aligned_cols=211 Identities=55% Similarity=0.898 Sum_probs=179.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+|||++.|+++|+++.+++.++ +...+|||||||||+|+|.++++++.++++ ..++++++++|.|++.|+|
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~----~~~~~eiivvdd~S~D~t~~~~~~~~~~~~-~~i~~i~~~~n~G~~~a~~ 75 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEER----PSFSYEIIVVDDGSKDGTAEVARKLARKNP-ALIRVLTLPKNRGKGGAVR 75 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhcc----CCCCEEEEEEeCCCCCchHHHHHHHHHhCC-CcEEEEEcccCCCcHHHHH
Confidence 69999999999999999999986642 233789999999999999999999988774 2368899899999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.|++|||+++|+|+.++|++++++++.+.+ ++.+++.|.+.....+........+.+.....
T Consensus 76 ~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~--------------~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~ 141 (211)
T cd04188 76 AGMLAARGDYILFADADLATPFEELEKLEEALKT--------------SGYDIAIGSRAHLASAAVVKRSWLRNLLGRGF 141 (211)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhc--------------cCCcEEEEEeeccCCcccccccHHHHHHHHHH
Confidence 9999999999999999999999999999999765 45689999887543332234556667777766
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecCCc
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEGSK 323 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~GS~ 323 (569)
..+.+...+..+.+.++|+++|+|++++++++....+.|.+|+||+.|+.++|+++.++|+.|++++||+
T Consensus 142 ~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~~~~~~~~~ 211 (211)
T cd04188 142 NFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIPGSK 211 (211)
T ss_pred HHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcceecCCCCC
Confidence 6666777777888999999999999999986555567888999999999999999999999999999864
No 5
>KOG2978|consensus
Probab=99.97 E-value=7.8e-30 Score=239.72 Aligned_cols=227 Identities=26% Similarity=0.342 Sum_probs=198.9
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCCh
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGK 168 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gk 168 (569)
.++.||++|+|||.++|+-++.-+...+.+.. .++|||+|||+|.|+|.++++++++.+++++|.+..+....|.
T Consensus 2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~-----~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGL 76 (238)
T KOG2978|consen 2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEG-----KKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGL 76 (238)
T ss_pred CcceeEEeccccCCCCCeeeHHHHHhhhhhhc-----CceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccc
Confidence 35689999999999999966665555544332 3899999999999999999999999998899999998889999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHH
Q psy7267 169 GGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNI 248 (569)
Q Consensus 169 a~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~ 248 (569)
+.|.-.|+++|+|||+++||||.+++|.+++++++...+ ..+|+|.|.|+. .++++..|...|++
T Consensus 77 gtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~--------------~~~div~GTRYa-~~ggV~gW~mkRk~ 141 (238)
T KOG2978|consen 77 GTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKE--------------GNYDIVLGTRYA-GGGGVYGWDMKRKI 141 (238)
T ss_pred hHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhc--------------cCcceeeeeeEc-CCCceecchhhHHH
Confidence 999999999999999999999999999999999998877 467999999974 56777889999999
Q ss_pred hhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEec-C-Cccch
Q psy7267 249 LMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIE-G-SKIVP 326 (569)
Q Consensus 249 ~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~-G-S~~~~ 326 (569)
.+++.+++.+.+.+.+..|.++.|+++++++++.......+.+|.+.+||..|+++.||.|.++|+++.+|. | |+..
T Consensus 142 IS~gAn~la~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~GeSKLg- 220 (238)
T KOG2978|consen 142 ISRGANFLARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRTYGESKLG- 220 (238)
T ss_pred HhhhhHHHHHHhccCCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEEeecccccccc-
Confidence 999999999999999999999999999999999986667778999999999999999999999999999987 6 7753
Q ss_pred hHHHHHHHHH
Q psy7267 327 VFSWIQMGWD 336 (569)
Q Consensus 327 ~~~~~~~~~~ 336 (569)
.....++.+.
T Consensus 221 ~~eIv~ylk~ 230 (238)
T KOG2978|consen 221 GKEIVQYLKG 230 (238)
T ss_pred HHHHHHHHHH
Confidence 2333444333
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.97 E-value=2.1e-28 Score=263.76 Aligned_cols=232 Identities=15% Similarity=0.200 Sum_probs=174.2
Q ss_pred CCCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC
Q psy7267 86 DEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN 165 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n 165 (569)
....|+|||+||+|||++.|+++++++.+| +|| ++||+||||||+|+|.+.++++.+++ +++++++.++|
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q------~yp--~~eiiVvdD~s~d~t~~~l~~~~~~~--~~v~~i~~~~n 119 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLAL------RYP--NYEVIAINDGSSDNTGEILDRLAAQI--PRLRVIHLAEN 119 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhC------CCC--CeEEEEEECCCCccHHHHHHHHHHhC--CcEEEEEcCCC
Confidence 345678999999999999999999999887 777 78999999999999999999998887 68999998999
Q ss_pred CChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHH
Q psy7267 166 RGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFF 245 (569)
Q Consensus 166 ~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~ 245 (569)
.||+.|+|.|++.+++|+++++|+|+.++||+++++++.++++ +++++|.|.....+..+...+...
T Consensus 120 ~Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~-------------~~v~~v~g~~~~~~~~~~~~~~~~ 186 (420)
T PRK11204 120 QGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHN-------------PRVGAVTGNPRIRNRSTLLGRIQV 186 (420)
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhC-------------CCeEEEECCceeccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999764 566777776544333222222111
Q ss_pred HHHhhhh-hhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEE--EEEecCC
Q psy7267 246 RNILMKG-FHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVN--WTEIEGS 322 (569)
Q Consensus 246 r~~~~~~-~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~--~~~~~GS 322 (569)
..+.... .........+ ......|.+.++||++++++ +++..+...+|.|++.|+.++|+++.++|.. +++.+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~v-gg~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t 264 (420)
T PRK11204 187 GEFSSIIGLIKRAQRVYG-RVFTVSGVITAFRKSALHEV-GYWSTDMITEDIDISWKLQLRGWDIRYEPRALCWILMPET 264 (420)
T ss_pred HHHHHhhhHHHHHHHHhC-CceEecceeeeeeHHHHHHh-CCCCCCcccchHHHHHHHHHcCCeEEeccccEEEeECccc
Confidence 1111100 0000011111 22233456679999999998 3333345678999999999999999999853 4444333
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy7267 323 KIVPVFSWIQMGWDVLNIWLHYTLGLWKIKA 353 (569)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~~ 353 (569)
. +.+.+|+.||..|.++...
T Consensus 265 ~-----------~~~~~Qr~RW~~G~~~~l~ 284 (420)
T PRK11204 265 L-----------KGLWKQRLRWAQGGAEVLL 284 (420)
T ss_pred H-----------HHHHHHHHHHhcCHHHHHH
Confidence 3 6678899999999876543
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=6.9e-28 Score=262.54 Aligned_cols=229 Identities=17% Similarity=0.188 Sum_probs=173.8
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
..|.|||+||+|||++.|+++++++++| +|| ++||+||||||+|+|.++++++.+++ +++++++.++|.|
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q------~yp--~~eIivVdDgs~D~t~~~~~~~~~~~--~~v~vv~~~~n~G 142 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQ------TYT--NIEVIAINDGSSDDTAQVLDALLAED--PRLRVIHLAHNQG 142 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcC------CCC--CeEEEEEECCCCccHHHHHHHHHHhC--CCEEEEEeCCCCC
Confidence 4688999999999999999999999887 788 68999999999999999999998887 6899999889999
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHH
Q psy7267 168 KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRN 247 (569)
Q Consensus 168 ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~ 247 (569)
|+.|+|.|++.+++|+++++|||+.++||+++++++.+.++ ++.+++.|.....+..+...+.....
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~-------------~~~g~v~g~~~~~~~~~~~~~~~~~e 209 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIAN-------------PRTGAVTGNPRIRTRSTLIGRVQVGE 209 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhC-------------CCeEEEEccceecCCCcchhhHHHHH
Confidence 99999999999999999999999999999999999999775 46677777654433333222211111
Q ss_pred HhhhhhhhH--hhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEE--EEEecCCc
Q psy7267 248 ILMKGFHFI--VWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVN--WTEIEGSK 323 (569)
Q Consensus 248 ~~~~~~~~l--~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~--~~~~~GS~ 323 (569)
+.. ..... .....+ .+....|++.++||++++++ +++..+...+|.|+..|+.++|+++.+.|.. +.+.+.+.
T Consensus 210 ~~~-~~~~~~~~~~~~g-~~~~~sG~~~~~rr~al~~v-Gg~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~ 286 (444)
T PRK14583 210 FSS-IIGLIKRTQRVYG-QVFTVSGVVAAFRRRALADV-GYWSPDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETL 286 (444)
T ss_pred HHH-HHHHHHHHHHHhC-CceEecCceeEEEHHHHHHc-CCCCCCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCH
Confidence 111 00000 001111 22223456679999999998 3344445778999999999999999999854 44433333
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy7267 324 IVPVFSWIQMGWDVLNIWLHYTLGLWKIKA 353 (569)
Q Consensus 324 ~~~~~~~~~~~~~~l~~r~ry~~g~w~i~~ 353 (569)
+.+++||.||..|..+...
T Consensus 287 -----------~~~~~Qr~RW~~G~~~~~~ 305 (444)
T PRK14583 287 -----------RGLWKQRLRWAQGGAEVFL 305 (444)
T ss_pred -----------HHHHHHHHHHhCcHHHHHH
Confidence 6778899999999866543
No 8
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.96 E-value=6.8e-28 Score=240.41 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=161.8
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChH
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKG 169 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka 169 (569)
|.||||||+|||++.|.++|+|+++| +||...+||+||||+|+|+|.++++++.... ..++.++.+..|.|++
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~------~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~-~~~i~~~~~~~~~G~~ 73 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSAL------DYPRSKLDVKLLLEEDDEETIAAARALRLPS-IFRVVVVPPSQPRTKP 73 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhC------cCCcccEEEEEEECCCCchHHHHHHHhccCC-CeeEEEecCCCCCchH
Confidence 56999999999999999999999887 7887679999999999999999999875321 1356666666788999
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccc-ccchhhHHHHHH
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEA-LANVQRSFFRNI 248 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~-~~~~~~~~~r~~ 248 (569)
.|+|.|+++++||||+++|+|+.++|+++.++++.+.+.+ +++.++.+.....+. .....+.....+
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLD------------DKLACVQAPLNYYNARENWLTRMFALEY 141 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcC------------CCEEEEeCceEeeCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999997531 233344433222211 111111110000
Q ss_pred hhhhhhhHhhhccccccc-ccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecCCccchh
Q psy7267 249 LMKGFHFIVWFTGVRTIR-DTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEGSKIVPV 327 (569)
Q Consensus 249 ~~~~~~~l~~~~~~~~i~-d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~GS~~~~~ 327 (569)
...+..........+.. ...+++.++||++++++ +++....+.+|.|++.|+.+.|+++.++|........+.
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~v-gg~~~~~~~eD~~l~~rl~~~G~r~~~~~~~~~~~~~~~---- 215 (241)
T cd06427 142 -AAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLREL-GGWDPFNVTEDADLGLRLARAGYRTGVLNSTTLEEANNA---- 215 (241)
T ss_pred -HHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHc-CCCCcccchhhHHHHHHHHHCCceEEEecccccccCcHh----
Confidence 00011000101111111 12334468999999998 233333567899999999999999999975332222222
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHH
Q psy7267 328 FSWIQMGWDVLNIWLHYTLGLWKIKAM 354 (569)
Q Consensus 328 ~~~~~~~~~~l~~r~ry~~g~w~i~~~ 354 (569)
.+.+++++.||..|.+++...
T Consensus 216 ------~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 216 ------LGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred ------HHHHHHHHHHHhccHHHHHHH
Confidence 367888999999999887643
No 9
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.96 E-value=1.1e-27 Score=233.78 Aligned_cols=218 Identities=26% Similarity=0.385 Sum_probs=171.2
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+++.|+++|+++.+|.. ...+|||||||||+|+|.++++++.+++ +.++++.+++|.|++.|+|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-------~~~~eiiiVDd~S~d~t~~~~~~~~~~~--~~i~~~~~~~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-------GIDYEIIVVDDNSPDGTAEIVRELAKEY--PRVRLIVRPGKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-------CCCeEEEEEeCCCCCChHHHHHHHHHhC--CceEEEecCCCCChHHHHH
Confidence 699999999999999999999843 1278999999999999999999998877 6788998899999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.|++|+|+++|+|+.++|++++.+++.+.+ ++.++|.|.+.... .....+...+.......
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~--------------~~~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~ 136 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLE--------------GGADLVIGSRYVEG-GGVEGWGLKRKLISRGA 136 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhc--------------CCCCEEEEeeeecC-CccCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999765 34578888775432 22233344444444444
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEec-CCccchhHHHHH
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIE-GSKIVPVFSWIQ 332 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~-GS~~~~~~~~~~ 332 (569)
....+.....+..+.++++++++|++++++......+++.+|.|++.|+.+.|+++.++|..+..+. |+.....+..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~~~~~~~~ 216 (224)
T cd06442 137 NLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVE 216 (224)
T ss_pred HHHHHHHcCCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCceeHHHHHH
Confidence 4444444455677888899999999999993234456788899999999999999999999887766 433234444444
Q ss_pred HHH
Q psy7267 333 MGW 335 (569)
Q Consensus 333 ~~~ 335 (569)
+.+
T Consensus 217 ~~~ 219 (224)
T cd06442 217 YLK 219 (224)
T ss_pred HHH
Confidence 433
No 10
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=5.6e-27 Score=255.16 Aligned_cols=232 Identities=15% Similarity=0.184 Sum_probs=169.0
Q ss_pred CCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCC
Q psy7267 87 EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR 166 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~ 166 (569)
...|+||||||+|||++.|+++|+++.+| +||.+.+||+||||||+|+|.++++++++++ ++++++..++|.
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q------~yp~~~~eIiVVDd~StD~T~~il~~~~~~~--~~v~v~~~~~~~ 117 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQ------TYPIELIDIILANNQSTDDSFQVFCRAQNEF--PGLSLRYMNSDQ 117 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhc------CCCCCCeEEEEEECCCChhHHHHHHHHHHhC--CCeEEEEeCCCC
Confidence 44688999999999999999999999988 8998889999999999999999999988887 677777777889
Q ss_pred ChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchh-h---
Q psy7267 167 GKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQ-R--- 242 (569)
Q Consensus 167 Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~-~--- 242 (569)
||+.|+|.|++.+++|+|+++|+|+.++||+++++++.++++ ++++++.|..... .+.... .
T Consensus 118 Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~-------------~~v~~v~g~~~~~-~~~~~~~~~~~ 183 (439)
T TIGR03111 118 GKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENN-------------PDIHAMTGVILTD-KELIEKTKGRF 183 (439)
T ss_pred CHHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhC-------------CCeEEEEeEEecC-chhhhhhcchh
Confidence 999999999999999999999999999999999999999864 4556666655321 111100 0
Q ss_pred -HHHHH--HhhhhhhhHh-hh--cccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHH-cCCCEEEEEEE
Q psy7267 243 -SFFRN--ILMKGFHFIV-WF--TGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEV-LHIPMAEVSVN 315 (569)
Q Consensus 243 -~~~r~--~~~~~~~~l~-~~--~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~-~G~rI~~vPv~ 315 (569)
...+. +.......+. +. .....+....|++.++||++++++ +++..+...+|+|+..|++. .|+++.++|..
T Consensus 184 ~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~v-ggf~~~~i~ED~~l~~rl~~~~g~kv~~~~~a 262 (439)
T TIGR03111 184 LKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKT-QLYNSETVGEDTDMTFQIRELLDGKVYLCENA 262 (439)
T ss_pred hhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHh-CCCCCCCcCccHHHHHHHHHhcCCeEEECCCC
Confidence 01110 0000000000 00 001122334456779999999998 34444567899999999964 68999988744
Q ss_pred --EEEecCCccchhHHHHHHHHHHHHHHHHhcchhhHHH
Q psy7267 316 --WTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWKIK 352 (569)
Q Consensus 316 --~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~ 352 (569)
+++.+.+. +.+++||.||.+|..+..
T Consensus 263 ~~~~~~p~t~-----------~~~~~QR~RW~rG~~qv~ 290 (439)
T TIGR03111 263 IFYVDPIDGL-----------NKLYTQRQRWQRGELEVS 290 (439)
T ss_pred EEEEECCcCH-----------HHHHHHHHHHhccHHHHH
Confidence 44433333 567778888888865554
No 11
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.95 E-value=3.9e-27 Score=232.97 Aligned_cols=225 Identities=16% Similarity=0.183 Sum_probs=158.2
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC--CCeEEEEEcCCCCC
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG--EDIVRGLKLLKNRG 167 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~--~~~V~vi~~~~n~G 167 (569)
|+||||||+|||++.|.++|+++++| +||.+.+||||||| |+|+|.++++++.++++ ..+++.+...+|.|
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q------~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G 73 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACAL------DYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTG 73 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhc------CCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCC
Confidence 46999999999999999999999987 88887899999998 99999999998866542 24677777666667
Q ss_pred -hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccc-ccchhhHHH
Q psy7267 168 -KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEA-LANVQRSFF 245 (569)
Q Consensus 168 -ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~-~~~~~~~~~ 245 (569)
|+.|+|.|++.+++|||+++|+|+.++|++|+++...+.+ +++++|.+.....+. .++..+...
T Consensus 74 ~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~--------------~~v~~v~~~~~~~~~~~~~~~~~~~ 139 (232)
T cd06437 74 YKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFAD--------------PKLGFVQTRWGHINANYSLLTRVQA 139 (232)
T ss_pred CchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcC--------------CCeEEEecceeeEcCCCchhhHhhh
Confidence 7999999999999999999999999999999997776654 455666664432222 221111100
Q ss_pred HHHhhhh-hhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecC-Cc
Q psy7267 246 RNILMKG-FHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEG-SK 323 (569)
Q Consensus 246 r~~~~~~-~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~G-S~ 323 (569)
....... ........ ........++..+|||++++++ +++..+.+.+|+||+.|+..+|+++.++|.....+.. +.
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~rr~~~~~v-gg~~~~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~ 217 (232)
T cd06437 140 MSLDYHFTIEQVARSS-TGLFFNFNGTAGVWRKECIEDA-GGWNHDTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPAS 217 (232)
T ss_pred hhHHhhhhHhHhhHhh-cCCeEEeccchhhhhHHHHHHh-CCCCCCcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcC
Confidence 0000000 00000111 1111122344558999999998 3344445678999999999999999999854444332 33
Q ss_pred cchhHHHHHHHHHHHHHHHHhcch
Q psy7267 324 IVPVFSWIQMGWDVLNIWLHYTLG 347 (569)
Q Consensus 324 ~~~~~~~~~~~~~~l~~r~ry~~g 347 (569)
. +.+..|++||..|
T Consensus 218 ~----------~~~~~q~~rW~~g 231 (232)
T cd06437 218 M----------SAYRSQQHRWSKG 231 (232)
T ss_pred H----------HHHHHHHHHhccC
Confidence 2 6677888998776
No 12
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.95 E-value=3e-26 Score=240.30 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=168.8
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCCh
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGK 168 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gk 168 (569)
.+++|||||+|||++.|+++++++.+.+.+.. .++||+||||||+|+|.++++++.++.+ .+++.+.+.+|.|+
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~-----~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLG-----KEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCC-----CCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCCH
Confidence 45699999999999999999999987654321 2689999999999999999998865532 56777777889999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHH
Q psy7267 169 GGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNI 248 (569)
Q Consensus 169 a~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~ 248 (569)
+.|+|.|+++|+||+++++|+|++.+|++++++++.+++ ++|+|.|.+... ..+..+++
T Consensus 79 ~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~---------------~~DvV~~~r~~~------~~~~~r~~ 137 (325)
T PRK10714 79 HSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE---------------GYDVVGTVRQNR------QDSWFRKT 137 (325)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHh---------------hCCEEEEEEcCC------CCcHHHHH
Confidence 999999999999999999999999999999999999864 458887766421 12456777
Q ss_pred hhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEec-C-Cccch
Q psy7267 249 LMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIE-G-SKIVP 326 (569)
Q Consensus 249 ~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~-G-S~~~~ 326 (569)
.++.++.+.+...+..+.|.+|+|++++|++++++.. ..+...+ +...+...|+++.++|+.+.++. | |+..
T Consensus 138 ~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~~~l~~--~~~~~~~---~~~l~~~~g~~i~evpv~~~~R~~G~Sk~~- 211 (325)
T PRK10714 138 ASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLH--CHERSTF---IPILANTFARRAIEIPVHHAEREFGDSKYS- 211 (325)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHHHHHHH--CCCCccH---HHHHHHHcCCCEEEEEeEecCccCCcCCCC-
Confidence 7777777777888889999999999999999999831 1222222 34556778999999999999887 6 6643
Q ss_pred hHHHHHHH
Q psy7267 327 VFSWIQMG 334 (569)
Q Consensus 327 ~~~~~~~~ 334 (569)
+++.++..
T Consensus 212 ~~~~~~~~ 219 (325)
T PRK10714 212 FMRLINLM 219 (325)
T ss_pred HHHHHHHH
Confidence 34444433
No 13
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.95 E-value=2e-26 Score=222.75 Aligned_cols=187 Identities=18% Similarity=0.091 Sum_probs=151.3
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC--
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG-- 167 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G-- 167 (569)
|+||||||+|||++.|.++|+++++| +|| ++|||||||+|+|+|.++++++.++++..+++++...++.|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q------~~~--~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQ------DYP--KYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhc------cCC--CeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC
Confidence 46999999999999999999999987 666 58999999999999999999998887544677777666644
Q ss_pred -hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHH
Q psy7267 168 -KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFR 246 (569)
Q Consensus 168 -ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r 246 (569)
++.++|.|++.+++|+++++|+|+.++|++|+++++.+.+ +++++|.|.
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~--------------~~~~~v~~~---------------- 122 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMD--------------PGVGLVTCL---------------- 122 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhC--------------CCCCeEEee----------------
Confidence 5678999999999999999999999999999999999865 456777764
Q ss_pred HHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCC---chhhchHHHHHHHHcCCCEEEEEEEEEEecC-C
Q psy7267 247 NILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQ---RWAFDVELLFIAEVLHIPMAEVSVNWTEIEG-S 322 (569)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e---~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~G-S 322 (569)
...++..++||++++++ +.+.+ ...+|++|+.|+.++|+++.++|....++.+ .
T Consensus 123 --------------------~~~g~~~~~r~~~~~~~--ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~ 180 (196)
T cd02520 123 --------------------CAFGKSMALRREVLDAI--GGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGST 180 (196)
T ss_pred --------------------cccCceeeeEHHHHHhc--cChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcc
Confidence 12235679999999998 33322 2457999999999999999999876655554 2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcc
Q psy7267 323 KIVPVFSWIQMGWDVLNIWLHYTL 346 (569)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~r~ry~~ 346 (569)
+ ++.+++++.||..
T Consensus 181 ~----------~~~~~~q~~rw~~ 194 (196)
T cd02520 181 S----------LASFWRRQLRWSR 194 (196)
T ss_pred c----------HHHHHHHHHHHhc
Confidence 2 1566677777754
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.94 E-value=8.6e-26 Score=240.81 Aligned_cols=205 Identities=15% Similarity=0.035 Sum_probs=150.7
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
..|+||||||+|||++.|+++|+|+.+| +|| ++||+|+||+|+|.|.++++++++++|+.+++++..+++.|
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~q------~Yp--~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G 110 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCRQ------DYP--GFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHG 110 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHhc------CCC--CeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCC
Confidence 3678999999999999999999999998 888 59999999999999999999999888666788887666655
Q ss_pred ---hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHH
Q psy7267 168 ---KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSF 244 (569)
Q Consensus 168 ---ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~ 244 (569)
|..+++.++++|++|+++++|+|+.++|++|+++++.+++ +++++|.+.......++...+..
T Consensus 111 ~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~--------------~~v~~V~~~~~~~~~~~~~~~l~ 176 (373)
T TIGR03472 111 PNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLAD--------------PDVGLVTCLYRGRPVPGFWSRLG 176 (373)
T ss_pred CChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcC--------------CCcceEeccccCCCCCCHHHHHH
Confidence 7788888999999999999999999999999999999975 46677777543222222211111
Q ss_pred HHHHhhhhh-hhHhhhcccccccccccceeeEeHHHHHHHhccccC---CchhhchHHHHHHHHcCCCEEEEEEEEE
Q psy7267 245 FRNILMKGF-HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHV---QRWAFDVELLFIAEVLHIPMAEVSVNWT 317 (569)
Q Consensus 245 ~r~~~~~~~-~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~---e~~~~D~EL~~Ra~~~G~rI~~vPv~~~ 317 (569)
......... ........+ ......|.+.++||++++++ +.++ ....+|.+|..++.++|+++...|....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~a~RR~~l~~i--GGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~ 250 (373)
T TIGR03472 177 AMGINHNFLPSVMVARALG-RARFCFGATMALRRATLEAI--GGLAALAHHLADDYWLGELVRALGLRVVLAPVVVD 250 (373)
T ss_pred HHHhhhhhhHHHHHHHhcc-CCccccChhhheeHHHHHHc--CChHHhcccchHHHHHHHHHHHcCCeEEecchhhh
Confidence 100000010 000111111 11223456679999999999 3332 3456899999999999999998875433
No 15
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.94 E-value=1.8e-25 Score=219.45 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=159.1
Q ss_pred ccEEEEEeecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC-
Q psy7267 90 VNLSVIVPAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG- 167 (569)
Q Consensus 90 p~VSVIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G- 167 (569)
|+||||||+|||+ +.++++|+|+++| +||...+||+||||||+|+|.++++++..++ +++++..+.|.|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q------~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAI------DYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhc------CCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCCCC
Confidence 4699999999987 5789999999987 7776569999999999999999999987653 456666666655
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccc--hhhHHH
Q psy7267 168 KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALAN--VQRSFF 245 (569)
Q Consensus 168 ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~--~~~~~~ 245 (569)
+++++|.|++++++|||+++|+|+.++|++++++++.+.++ ++.+++.|.......... ......
T Consensus 72 ~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~ 138 (234)
T cd06421 72 KAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDD-------------PKVALVQTPQFFYNPDPFDWLADGAP 138 (234)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcC-------------CCeEEEecceEEecCCcchhHHHHHH
Confidence 78899999999999999999999999999999999999874 455667665443322221 011110
Q ss_pred HHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecC-Ccc
Q psy7267 246 RNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEG-SKI 324 (569)
Q Consensus 246 r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~G-S~~ 324 (569)
. ......................+++.++||++++++ ++.....+.+|++++.|+.++|+++.++|.....+.. ..
T Consensus 139 ~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~i-g~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~- 215 (234)
T cd06421 139 N-EQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDEI-GGFPTDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPET- 215 (234)
T ss_pred H-HHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHHh-CCCCccceeccHHHHHHHHHcCceEEEecCccccccCCcc-
Confidence 0 000111111111111122233456789999999998 2333345678999999999999999999865443322 11
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhh
Q psy7267 325 VPVFSWIQMGWDVLNIWLHYTLGLW 349 (569)
Q Consensus 325 ~~~~~~~~~~~~~l~~r~ry~~g~w 349 (569)
.+.+++++.||..|..
T Consensus 216 ---------~~~~~~q~~rw~~~~~ 231 (234)
T cd06421 216 ---------LAAYIKQRLRWARGML 231 (234)
T ss_pred ---------HHHHHHHHHHHhcCCe
Confidence 1447778888877753
No 16
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.93 E-value=2.8e-24 Score=246.99 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=155.2
Q ss_pred CCCCccEEEEEeecCCCC-ChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC
Q psy7267 86 DEPSVNLSVIVPAYNEQD-RLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK 164 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~-~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~ 164 (569)
....|+|||+||+|||+. .+++++.+++++ |||.+++||+|+||||+|+|.+++++ .+++++..++
T Consensus 256 ~~~~P~VsViIPtYNE~~~vv~~tI~a~l~~------dYP~~k~EViVVDDgS~D~t~~la~~-------~~v~yI~R~~ 322 (852)
T PRK11498 256 MSLWPTVDIFVPTYNEDLNVVKNTIYASLGI------DWPKDKLNIWILDDGGREEFRQFAQE-------VGVKYIARPT 322 (852)
T ss_pred cCCCCcEEEEEecCCCcHHHHHHHHHHHHhc------cCCCCceEEEEEeCCCChHHHHHHHH-------CCcEEEEeCC
Confidence 345689999999999995 567788888877 99998999999999999999998877 3577887766
Q ss_pred C-CChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhh-
Q psy7267 165 N-RGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQR- 242 (569)
Q Consensus 165 n-~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~- 242 (569)
| .||++|+|.|+++++||||+++|||+.++++++++++..+.++ ++.++|.+.....+.+.....
T Consensus 323 n~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~d-------------P~VglVQtp~~f~n~dp~~rnl 389 (852)
T PRK11498 323 HEHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKD-------------KKLAMMQTPHHFFSPDPFERNL 389 (852)
T ss_pred CCcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhC-------------CCeEEEEcceeccCCchHHHhh
Confidence 5 4699999999999999999999999999999999999988765 455666554322222211100
Q ss_pred HHHHHHhh---hhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEE--EEE
Q psy7267 243 SFFRNILM---KGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSV--NWT 317 (569)
Q Consensus 243 ~~~r~~~~---~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv--~~~ 317 (569)
...+.... .++..+.............|++.++||++++++ +++..+...+|.|++.|+.++||++.+++. .+.
T Consensus 390 ~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeV-GGfd~~titED~dlslRL~~~Gyrv~yl~~~~a~g 468 (852)
T PRK11498 390 GRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEI-GGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAG 468 (852)
T ss_pred HHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHh-cCCCCCccCccHHHHHHHHHcCCEEEEEeccceeE
Confidence 00000000 001111100000011112345679999999999 344445577999999999999999999863 333
Q ss_pred EecCCccchhHHHHHHHHHHHHHHHHhcchhhHH
Q psy7267 318 EIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWKI 351 (569)
Q Consensus 318 ~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~i 351 (569)
..+.+. ....+|+.||..|..++
T Consensus 469 laPesl-----------~~~~~QR~RWarG~lQi 491 (852)
T PRK11498 469 LATESL-----------SAHIGQRIRWARGMVQI 491 (852)
T ss_pred ECCCCH-----------HHHHHHHHHHHHHHHHH
Confidence 222333 44455666666655443
No 17
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.93 E-value=5.6e-25 Score=217.33 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=154.5
Q ss_pred EEEEeecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHH-HHHHHHhHhhCCCeEEEEEcCCCCC-hH
Q psy7267 93 SVIVPAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTM-QVVHQYTEKCGEDIVRGLKLLKNRG-KG 169 (569)
Q Consensus 93 SVIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~-eil~~~~~~~~~~~V~vi~~~~n~G-ka 169 (569)
|||||+|||+ +.|+++|+++.+| +|| ++||+||||+|+|+|. ++++++.++.+ .+++++...+|.| ++
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q------~~~--~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~ 71 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAAL------DYP--NFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKA 71 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhC------CCC--CcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCch
Confidence 7999999998 6899999998876 666 6899999999999985 67777766543 5788888777777 69
Q ss_pred HHHHHHHHhcc--CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc-cchhhHHHH
Q psy7267 170 GAVTLGTKCAR--GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL-ANVQRSFFR 246 (569)
Q Consensus 170 ~AlN~Gl~~A~--gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~-~~~~~~~~r 246 (569)
.|+|.|++++. +|||+++|+|+.++|++|.++++.+++ ++.++|.+........ ....+....
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDD--------------PRVGFVQAPQDYRDGEESLFKRMCYA 137 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcC--------------CCeeEEecCccccCCCccHHHHHHhH
Confidence 99999999986 699999999999999999999999864 4556666533221111 111110000
Q ss_pred HHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccC-CchhhchHHHHHHHHcCCCEEEEEEEEEEecC-Ccc
Q psy7267 247 NILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHV-QRWAFDVELLFIAEVLHIPMAEVSVNWTEIEG-SKI 324 (569)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~-e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~G-S~~ 324 (569)
.+.......... ..........+.+.++||++++++ +.++ ..+.+|.|++.|+.+.|+++.++|....+... +.
T Consensus 138 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~~~~i--Ggf~~~~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~- 213 (236)
T cd06435 138 EYKGFFDIGMVS-RNERNAIIQHGTMCLIRRSALDDV--GGWDEWCITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDT- 213 (236)
T ss_pred HHHHHHHHHhcc-ccccCceEEecceEEEEHHHHHHh--CCCCCccccchHHHHHHHHHCCcEEEEcchhhccCcCccc-
Confidence 000000000000 000011122345679999999999 4333 34567999999999999999999854333221 22
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhHHH
Q psy7267 325 VPVFSWIQMGWDVLNIWLHYTLGLWKIK 352 (569)
Q Consensus 325 ~~~~~~~~~~~~~l~~r~ry~~g~w~i~ 352 (569)
+..+.+++.||..|.++..
T Consensus 214 ---------~~~~~~q~~rw~~g~~~~~ 232 (236)
T cd06435 214 ---------FEAFKKQRFRWAYGAVQIL 232 (236)
T ss_pred ---------HHHHHHHHHHHhcchhhhh
Confidence 2677788999999987654
No 18
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.93 E-value=2.6e-24 Score=246.89 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=160.8
Q ss_pred CCCCccEEEEEeecCCCCCh-HHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccH--------------HHHHHHHhH
Q psy7267 86 DEPSVNLSVIVPAYNEQDRL-KPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKT--------------MQVVHQYTE 150 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~~I-~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T--------------~eil~~~~~ 150 (569)
....|+|||+||+|||+..+ ++++++++++ +||.+++||+|+||||||+| .+.++++.+
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~------dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~ 200 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAAKNM------DYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR 200 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHHHhC------CCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH
Confidence 34568899999999999755 5788888777 89988999999999999998 345556655
Q ss_pred hhCCCeEEEEEcCCCC-ChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEe
Q psy7267 151 KCGEDIVRGLKLLKNR-GKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVG 229 (569)
Q Consensus 151 ~~~~~~V~vi~~~~n~-Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G 229 (569)
+ .+++++..++|. +|++|+|.|+++++||+|+++|||+.++||+|++++..+.++ +++.+|.+
T Consensus 201 ~---~~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~d-------------p~v~~Vqt 264 (713)
T TIGR03030 201 K---LGVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVED-------------PKLFLVQT 264 (713)
T ss_pred H---cCcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhC-------------CCEEEEeC
Confidence 5 468888877775 599999999999999999999999999999999999999764 45555555
Q ss_pred eeeecccccchhh-HHHHHHh---hhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHc
Q psy7267 230 SRAHLEALANVQR-SFFRNIL---MKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVL 305 (569)
Q Consensus 230 ~r~~~~~~~~~~~-~~~r~~~---~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~ 305 (569)
.....+.+..... ....... ..++..+.......+.....|++.++||++++++ +++..+...+|++++.|+.++
T Consensus 265 p~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~i-GGf~~~~vtED~~l~~rL~~~ 343 (713)
T TIGR03030 265 PHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEI-GGIAGETVTEDAETALKLHRR 343 (713)
T ss_pred CeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHc-CCCCCCCcCcHHHHHHHHHHc
Confidence 4322222211100 0000000 0001111100000011112345578999999999 334445678899999999999
Q ss_pred CCCEEEEEEEEEEecC-CccchhHHHHHHHHHHHHHHHHhcchhhHHH
Q psy7267 306 HIPMAEVSVNWTEIEG-SKIVPVFSWIQMGWDVLNIWLHYTLGLWKIK 352 (569)
Q Consensus 306 G~rI~~vPv~~~~~~G-S~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~ 352 (569)
||++.++|........ .. .+.+.+||.||..|..++.
T Consensus 344 G~~~~y~~~~~~~g~~p~s----------l~~~~~Qr~RWa~G~~qi~ 381 (713)
T TIGR03030 344 GWNSAYLDRPLIAGLAPET----------LSGHIGQRIRWAQGMMQIF 381 (713)
T ss_pred CCeEEEeccccccccCCCC----------HHHHHHHHHHHhcChHHHH
Confidence 9999998744332221 12 2667788888888876654
No 19
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.93 E-value=1.3e-24 Score=216.59 Aligned_cols=224 Identities=19% Similarity=0.194 Sum_probs=162.5
Q ss_pred CCCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC
Q psy7267 86 DEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN 165 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n 165 (569)
....|++|||||+|||++.|.++|+++.+| +||...+||+||||+|+|+|.++++++.++ +++++..++|
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q------~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~ 94 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLAL------DYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPER 94 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhC------cCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCC
Confidence 455778999999999999999999999887 677656999999999999999999987543 5888888899
Q ss_pred CChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccc-hhhHH
Q psy7267 166 RGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALAN-VQRSF 244 (569)
Q Consensus 166 ~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~-~~~~~ 244 (569)
.|++.|+|.|++++++|||+++|+|+.++|++++++++.+++ ++.++++|......+.+. .....
T Consensus 95 ~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~ 160 (251)
T cd06439 95 RGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD--------------PSVGAVSGELVIVDGGGSGSGEGL 160 (251)
T ss_pred CChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC--------------CCccEEEeEEEecCCcccchhHHH
Confidence 999999999999999999999999999999999999999975 456778876654433220 11111
Q ss_pred HHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecC-Cc
Q psy7267 245 FRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEG-SK 323 (569)
Q Consensus 245 ~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~G-S~ 323 (569)
...+....... . .... ......+++.+++|++++. .......+|.++..++.+.|+++.++|.....+.. ..
T Consensus 161 ~~~~~~~~~~~-~-~~~~-~~~~~~g~~~~~rr~~~~~----~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~ 233 (251)
T cd06439 161 YWKYENWLKRA-E-SRLG-STVGANGAIYAIRRELFRP----LPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAED 233 (251)
T ss_pred HHHHHHHHHHH-H-HhcC-CeeeecchHHHhHHHHhcC----CCcccchhHHHHHHHHHHcCCeEEeccccEEEEeCccc
Confidence 11111111110 0 0111 1233445566889988873 23345567999999999999999999855444432 22
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhhH
Q psy7267 324 IVPVFSWIQMGWDVLNIWLHYTLGLWK 350 (569)
Q Consensus 324 ~~~~~~~~~~~~~~l~~r~ry~~g~w~ 350 (569)
. ...++++.||..|.|+
T Consensus 234 ~----------~~~~~~~~r~~~g~~~ 250 (251)
T cd06439 234 G----------SEEFRRRVRIAAGNLQ 250 (251)
T ss_pred H----------HHHHHHHHHHHhcccc
Confidence 1 3455667777777653
No 20
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.93 E-value=4.6e-24 Score=228.44 Aligned_cols=204 Identities=20% Similarity=0.138 Sum_probs=147.1
Q ss_pred CCCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCC-CeEEEEEcCC
Q psy7267 86 DEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGE-DIVRGLKLLK 164 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~-~~V~vi~~~~ 164 (569)
++..|+||||||+|||++.|+++|+++++| +||. ++|||||||+|+|+|.++++++.+++|. +++++++.++
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q------~yp~-~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQ------DYPG-KLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhC------CCCC-ceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC
Confidence 345688999999999999999999999987 7875 5899999999999999999999877742 2788887432
Q ss_pred ----CCChHHHHHHHHHhcc-----CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecc
Q psy7267 165 ----NRGKGGAVTLGTKCAR-----GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLE 235 (569)
Q Consensus 165 ----n~Gka~AlN~Gl~~A~-----gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~ 235 (569)
+.||+.|+|.|+++|+ +|+++++|+|+.++|++++++++.+++. +.+++.+......
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~--------------~~~~vs~~~~~~~ 174 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAE--------------GLDLVSLMVRLRC 174 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhC--------------CCCEEEecccccC
Confidence 2589999999999999 9999999999999999999999999873 4566655432221
Q ss_pred cccchhhHHHHHHhhhhhh--hHhhhcc-cccccccccceeeEeHHHHHHHhccccC---CchhhchHHHHHHHHcCCCE
Q psy7267 236 ALANVQRSFFRNILMKGFH--FIVWFTG-VRTIRDTQCGFKLFTRKSALQLFSSIHV---QRWAFDVELLFIAEVLHIPM 309 (569)
Q Consensus 236 ~~~~~~~~~~r~~~~~~~~--~l~~~~~-~~~i~d~~~gf~lfrR~al~~I~~~~~~---e~~~~D~EL~~Ra~~~G~rI 309 (569)
.+...+.....+...... ...+... ........+++.++||++++++ +.++ ....+|++++.|++++|+++
T Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~v--GGf~~~~~~~~ED~~L~~r~~~~G~~v 251 (384)
T TIGR03469 175 -ESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERI--GGIAAIRGALIDDCTLAAAVKRSGGRI 251 (384)
T ss_pred -CCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHc--CCHHHHhhCcccHHHHHHHHHHcCCcE
Confidence 111111111111000000 0000000 1112224567889999999999 4333 23567999999999999998
Q ss_pred EEEE
Q psy7267 310 AEVS 313 (569)
Q Consensus 310 ~~vP 313 (569)
....
T Consensus 252 ~~~~ 255 (384)
T TIGR03469 252 WLGL 255 (384)
T ss_pred EEEe
Confidence 8764
No 21
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.93 E-value=1.2e-24 Score=224.45 Aligned_cols=216 Identities=19% Similarity=0.079 Sum_probs=142.6
Q ss_pred EEEEeecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHH
Q psy7267 93 SVIVPAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGA 171 (569)
Q Consensus 93 SVIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~A 171 (569)
|||||+||++ +.|.++|+|++++ .++...+|||||||||+|+|.+++.+.......++++++++++|.|.+.|
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~------~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a 74 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINR------TPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRA 74 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhc------CchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHH
Confidence 7999999999 9999999999987 44433579999999999999998876221111268999999999999999
Q ss_pred HHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhh
Q psy7267 172 VTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMK 251 (569)
Q Consensus 172 lN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~ 251 (569)
+|.|+++|+||||+++|+|+.++|++|+++++.+.+++.+.+.|........ ......... ...+...+.....+...
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDAD-TFEYRGSSG-DARGGFDWSLHFKWLPL 152 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCC-CeeEecCCC-ceeEEecccceeccccC
Confidence 9999999999999999999999999999999999886432221111100000 000000000 00000000000000000
Q ss_pred hhhh--HhhhcccccccccccceeeEeHHHHHHHhccccCCch----hhchHHHHHHHHcCCCEEEEEEEEEE
Q psy7267 252 GFHF--IVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW----AFDVELLFIAEVLHIPMAEVSVNWTE 318 (569)
Q Consensus 252 ~~~~--l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~----~~D~EL~~Ra~~~G~rI~~vPv~~~~ 318 (569)
.... ..............+++.++||++++++ +.+++.+ .+|+||+.|+.++|+++.++|.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~v--GgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~ 223 (299)
T cd02510 153 PEEERRRESPTAPIRSPTMAGGLFAIDREWFLEL--GGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVG 223 (299)
T ss_pred CHHHhhhcCCCCCccCccccceeeEEEHHHHHHh--CCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEE
Confidence 0000 0000011122334567889999999999 5565554 37999999999999999999954433
No 22
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.1e-23 Score=227.09 Aligned_cols=231 Identities=24% Similarity=0.301 Sum_probs=170.3
Q ss_pred CccEEEEEeecCCCC-ChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEc-CCCC
Q psy7267 89 SVNLSVIVPAYNEQD-RLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKL-LKNR 166 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~-~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~-~~n~ 166 (569)
.|+++|+||+|||+. .++++++++.++ +|| ++||++|||+|+|+|.+++++..++++ ++++++.. .+|.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~------dyp--~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQ------DYP--RYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhC------CCC--CceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCc
Confidence 588999999999999 999999999998 888 589999999999999999999988873 36666643 5789
Q ss_pred ChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc---cchhhH
Q psy7267 167 GKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL---ANVQRS 243 (569)
Q Consensus 167 Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~---~~~~~~ 243 (569)
||+.|+|.|++.+++|+|+++|||..++||+|.+++..+.+.+ ...++|........ +...+.
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~--------------~~~v~~~~~~~~~~~~~~~l~~~ 189 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPP--------------VGAVVGTPRIRNRPDPSNLLGRI 189 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCC--------------eeEEeCCceeeecCChhhhcchh
Confidence 9999999999999999999999999999999999999999842 22455544332221 111111
Q ss_pred HHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEEE--EEEecC
Q psy7267 244 FFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVN--WTEIEG 321 (569)
Q Consensus 244 ~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~--~~~~~G 321 (569)
..-..................+.-..|...++||++++++ +++..+...+|.+++.++...|+++.++|.. +.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~-g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~ 268 (439)
T COG1215 190 QAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEV-GGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPE 268 (439)
T ss_pred cchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHh-CCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcc
Confidence 1000000000000011111123444566789999999999 3456677789999999999999999999855 444433
Q ss_pred CccchhHHHHHHHHHHHHHHHHhcchhhHHHHH
Q psy7267 322 SKIVPVFSWIQMGWDVLNIWLHYTLGLWKIKAM 354 (569)
Q Consensus 322 S~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~~~ 354 (569)
+. ..+++||.||.+|.++....
T Consensus 269 t~-----------~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 269 TL-----------KELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred cH-----------HHHHHHHHHHHcccceeeeh
Confidence 43 67888999999998765543
No 23
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.92 E-value=1.1e-23 Score=207.98 Aligned_cols=228 Identities=18% Similarity=0.131 Sum_probs=161.7
Q ss_pred cEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHH
Q psy7267 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGG 170 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~ 170 (569)
++|||||+||+++.|.++|+++.+| .||..++||+||||+|+|+|.+.++++.+++ +.++++.+ ++.|++.
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q------~~~~~~~evivvd~~s~d~~~~~~~~~~~~~--~~v~~i~~-~~~~~~~ 71 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQ------SYPKDLIEIIVVDGGSTDGTREIVQEYAAKD--PRIRLIDN-PKRIQSA 71 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhc------cCCCCccEEEEEeCCCCccHHHHHHHHHhcC--CeEEEEeC-CCCCchH
Confidence 3899999999999999999999887 6665689999999999999999999988775 67888875 4678999
Q ss_pred HHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhh
Q psy7267 171 AVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILM 250 (569)
Q Consensus 171 AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~ 250 (569)
|+|.|++.+++|+++++|+|+.++|++++++++.+.+ ++.+++.|.......... ..........
T Consensus 72 a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ 136 (249)
T cd02525 72 GLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKR--------------TGADNVGGPMETIGESKF-QKAIAVAQSS 136 (249)
T ss_pred HHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhc--------------CCCCEEecceecCCCChH-HHHHHHHhhc
Confidence 9999999999999999999999999999999998876 455777776643322211 1111111000
Q ss_pred hhhh--hHhhhcccccccccccceeeEeHHHHHHHhccccCCch--hhchHHHHHHHHcCCCEEEEEEEEEEecC-Cccc
Q psy7267 251 KGFH--FIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW--AFDVELLFIAEVLHIPMAEVSVNWTEIEG-SKIV 325 (569)
Q Consensus 251 ~~~~--~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~--~~D~EL~~Ra~~~G~rI~~vPv~~~~~~G-S~~~ 325 (569)
.... ...............+++.+++|++++++ +..++.+ .+|.|++.|+.++|+++.++|.....+.. ++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~- 213 (249)
T cd02525 137 PLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKV--GGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTL- 213 (249)
T ss_pred hhccCCccccccccccccccccccceEEHHHHHHh--CCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCH-
Confidence 0000 00000000001123456679999999998 4444433 47999999999999999999855444332 221
Q ss_pred hhHHHHHHHHHHHHHHHHhcchhhHHHHH
Q psy7267 326 PVFSWIQMGWDVLNIWLHYTLGLWKIKAM 354 (569)
Q Consensus 326 ~~~~~~~~~~~~l~~r~ry~~g~w~i~~~ 354 (569)
+..++++.||..+.++....
T Consensus 214 ---------~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 214 ---------KKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ---------HHHHHHHHHHhhhhHHHHHh
Confidence 34556777777776655443
No 24
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.92 E-value=1.4e-23 Score=204.72 Aligned_cols=221 Identities=19% Similarity=0.136 Sum_probs=150.6
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC--CCCChHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL--KNRGKGGA 171 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~--~n~Gka~A 171 (569)
||||+||+++.|+++|+++++| +||.+.+||+||||||+|+|.++++ +....+.++++++..+ .|.|++.|
T Consensus 1 viip~~n~~~~l~~~l~sl~~q------~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a 73 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSAL------DYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNA 73 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhC------CCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHH
Confidence 6999999999999999999888 6776569999999999999999988 3334434678888766 47899999
Q ss_pred HHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhh
Q psy7267 172 VTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMK 251 (569)
Q Consensus 172 lN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~ 251 (569)
+|.|++++++|+|+++|+|+.++|++|+++++.+.++ +.+++.|.......++.............
T Consensus 74 ~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~--------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd04192 74 LTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKE--------------QIGLVAGPVIYFKGKSLLAKFQRLDWLSL 139 (229)
T ss_pred HHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcC--------------CCcEEeeeeeecCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988763 34556665433222222111110000000
Q ss_pred hhhhHhhhcccccccccccceeeEeHHHHHHHhccccCC---chhhchHHHHHHHHcCC-CEEEEE--EEEEEecCCccc
Q psy7267 252 GFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQ---RWAFDVELLFIAEVLHI-PMAEVS--VNWTEIEGSKIV 325 (569)
Q Consensus 252 ~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e---~~~~D~EL~~Ra~~~G~-rI~~vP--v~~~~~~GS~~~ 325 (569)
..........+... ...+++.+++|++++++ +.+++ ...+|.+++.|+.+.|+ ++.+++ ..+......
T Consensus 140 ~~~~~~~~~~~~~~-~~~g~~~~~rr~~~~~~--ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--- 213 (229)
T cd04192 140 LGLIAGSFGLGKPF-MCNGANMAYRKEAFFEV--GGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPV--- 213 (229)
T ss_pred HHHHhhHHHhcCcc-ccccceEEEEHHHHHHh--cCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCc---
Confidence 00000011111111 12345579999999999 44432 33469999999999999 887764 222222111
Q ss_pred hhHHHHHHHHHHHHHHHHhcch
Q psy7267 326 PVFSWIQMGWDVLNIWLHYTLG 347 (569)
Q Consensus 326 ~~~~~~~~~~~~l~~r~ry~~g 347 (569)
..+..+++++.||..|
T Consensus 214 ------~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 214 ------TSWKELLNQRKRWASK 229 (229)
T ss_pred ------hhHHHHHHHHHHhhcC
Confidence 1125677788888654
No 25
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.91 E-value=1.2e-24 Score=213.64 Aligned_cols=223 Identities=21% Similarity=0.208 Sum_probs=137.9
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC--
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG-- 167 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G-- 167 (569)
|+|+||||+|||++.|.++|++++++ +|| ++||+||||+|+|+|.+.++++.++++..+++++..+.|.|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~------~~~--~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~ 72 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQ------DYP--RLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPG 72 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTS------HHH--TEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcC------CCC--CeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcc
Confidence 56999999999999999999999987 343 79999999999999999999988888644678888776654
Q ss_pred -hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHH
Q psy7267 168 -KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFR 246 (569)
Q Consensus 168 -ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r 246 (569)
|+.|+|.|++++++|+|+++|+|+.++|++|.++++.+++ +++++|.+.....+......... .
T Consensus 73 ~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~-~ 137 (228)
T PF13641_consen 73 GKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFAD--------------PGVGAVGGPVFPDNDRNWLTRLQ-D 137 (228)
T ss_dssp HHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHB--------------SS--EEEEEEEETTCCCEEEE-T-T
T ss_pred hHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHh--------------CCCCeEeeeEeecCCCCHHHHHH-H
Confidence 8999999999999999999999999999999999999944 56777776664333222211110 0
Q ss_pred HHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccC-CchhhchHHHHHHHHcCCCEEEEEEEEEEec-CCcc
Q psy7267 247 NILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHV-QRWAFDVELLFIAEVLHIPMAEVSVNWTEIE-GSKI 324 (569)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~-e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~-GS~~ 324 (569)
.................+.....|++.+|||++++++ +.++ ....+|.+++.|+.++|+++.+.|.....+. .+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~--g~fd~~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~ 215 (228)
T PF13641_consen 138 LFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEV--GGFDPFILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSL 215 (228)
T ss_dssp --S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH---S--SSSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSST
T ss_pred HHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHh--CCCCCCCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCH
Confidence 0000000000000011112222356789999999999 3333 3445799999999999999999996544443 3332
Q ss_pred chhHHHHHHHHHHHHHHHHhcch
Q psy7267 325 VPVFSWIQMGWDVLNIWLHYTLG 347 (569)
Q Consensus 325 ~~~~~~~~~~~~~l~~r~ry~~g 347 (569)
+.+++++.||..|
T Consensus 216 ----------~~~~~q~~RW~~g 228 (228)
T PF13641_consen 216 ----------KAFFKQRFRWSRG 228 (228)
T ss_dssp ----------HHHHHHHHHHH--
T ss_pred ----------HHHHHHHhccCcC
Confidence 6677788888654
No 26
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.91 E-value=2.1e-23 Score=205.39 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=151.6
Q ss_pred cEEEEEeecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChH
Q psy7267 91 NLSVIVPAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKG 169 (569)
Q Consensus 91 ~VSVIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka 169 (569)
+||||||+|||+ +.|.+||+++.+| + +.||+||||||+|+|.+.+++.. .+ +.+.++. .+|.||+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q------~----~~eiivvdd~s~d~~~~~l~~~~-~~--~~~~v~~-~~~~g~~ 66 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQ------K----PLEIIVVTDGDDEPYLSILSQTV-KY--GGIFVIT-VPHPGKR 66 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhC------C----CCEEEEEeCCCChHHHHHHHhhc-cC--CcEEEEe-cCCCChH
Confidence 389999999999 9999999999986 2 46999999999999999875433 22 5566665 7789999
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHh
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNIL 249 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~ 249 (569)
.|+|.|++.|++|+|+++|+|+.++|++|+++++.+++ ++++++.|....................
T Consensus 67 ~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~--------------~~v~~v~~~~~~~~~~~~~~~~~~~~~~ 132 (235)
T cd06434 67 RALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFED--------------PKVGGVGTNQRILRPRDSKWSFLAAEYL 132 (235)
T ss_pred HHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhccC--------------CCEeEEcCceEeecCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999984 4667777655433321111111111111
Q ss_pred hhhh-hhHhhhcccccccccccceeeEeHHHHHHH-hccc--------cCCchhhchHHHHHHHHcCCCEEEEEEE--EE
Q psy7267 250 MKGF-HFIVWFTGVRTIRDTQCGFKLFTRKSALQL-FSSI--------HVQRWAFDVELLFIAEVLHIPMAEVSVN--WT 317 (569)
Q Consensus 250 ~~~~-~~l~~~~~~~~i~d~~~gf~lfrR~al~~I-~~~~--------~~e~~~~D~EL~~Ra~~~G~rI~~vPv~--~~ 317 (569)
.... ................+.+.++||++++++ +... ......+|.+++.|+.+.|+++.+.|.. ++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~ 212 (235)
T cd06434 133 ERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYT 212 (235)
T ss_pred HHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEE
Confidence 1000 000001111122223445678999999986 1111 1123456999999999999999998743 33
Q ss_pred EecCCccchhHHHHHHHHHHHHHHHHhcchhh
Q psy7267 318 EIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLW 349 (569)
Q Consensus 318 ~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w 349 (569)
+.+.+ .+.+++++.||..|.|
T Consensus 213 ~~~~~-----------~~~~~~q~~Rw~~~~~ 233 (235)
T cd06434 213 ETPEN-----------YKKFLKQQLRWSRSNW 233 (235)
T ss_pred Ecchh-----------HHHHHHHhhhhhhccc
Confidence 32222 2567788888887764
No 27
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.91 E-value=6.3e-23 Score=201.14 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=140.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEc----CCCCChH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKL----LKNRGKG 169 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~----~~n~Gka 169 (569)
||||+||+++.|+++|+|+++| .|| .++|||||||||+|+|.++++++.++++..+++++.. ++|.|.+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q------~~~-~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 73 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQ------DFE-GTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVG 73 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhC------CCC-CCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHH
Confidence 6999999999999999999887 565 2689999999999999999999887765456777643 3468999
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeec-ccccchhhHHHHHH
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHL-EALANVQRSFFRNI 248 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~-~~~~~~~~~~~r~~ 248 (569)
.|+|.|++.|+|||++++|+|+.++|+++++++..+.+++ +.++|.+... .++...........
T Consensus 74 ~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~~ 138 (219)
T cd06913 74 YAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHP---------------NSIIGCQVRRIPEDSTERYTRWINT 138 (219)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCC---------------CcEEEEEEEecCcccchhhHHHHHh
Confidence 9999999999999999999999999999999988887641 2233443322 11111111101010
Q ss_pred hhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCc---hhhchHHHHHHHHcCCCEEEEE---EEEEEecCC
Q psy7267 249 LMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQR---WAFDVELLFIAEVLHIPMAEVS---VNWTEIEGS 322 (569)
Q Consensus 249 ~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~---~~~D~EL~~Ra~~~G~rI~~vP---v~~~~~~GS 322 (569)
... ............. .......++||++++++ +.+++. +.+|.+|+.|+.++|.++..+| +.|+.+.+|
T Consensus 139 ~~~-~~~~~~~~~~~~~-~~~~~~~~~rr~~~~~~--g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~~~~s 214 (219)
T cd06913 139 LTR-EQLLTQVYTSHGP-TVIMPTWFCSREWFSHV--GPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRYHPGA 214 (219)
T ss_pred cCH-HHHHHHHHhhcCC-ccccccceeehhHHhhc--CCccchhccchhHHHHHHHHHHcCCceEEEcceeeeeeecCCC
Confidence 000 0011111111111 11112357999999998 444443 3579999999999999999886 455555554
Q ss_pred c
Q psy7267 323 K 323 (569)
Q Consensus 323 ~ 323 (569)
.
T Consensus 215 ~ 215 (219)
T cd06913 215 T 215 (219)
T ss_pred c
Confidence 4
No 28
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.91 E-value=1.9e-23 Score=197.79 Aligned_cols=185 Identities=36% Similarity=0.551 Sum_probs=149.3
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+++.|.++|+++.++.. +...+||+||||+|+|+|.++++++.+++ +.++++..++|.|++.|+|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~------~~~~~eiivvd~~s~d~~~~~~~~~~~~~--~~~~~~~~~~n~G~~~a~n 72 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLE------EGYDYEIIVVDDGSTDGTAEIARELAARV--PRVRVIRLSRNFGKGAAVR 72 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhc------cCCCEEEEEEcCCCCCChHHHHHHHHHhC--CCeEEEEccCCCCccHHHH
Confidence 689999999999999999999843 23378999999999999999999998887 5678899999999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.|+|||++++|+|+.+.|++|+++++.+.+ .+.++++|.+....+. ......+.+.....
T Consensus 73 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~--------------~~~~~v~g~~~~~~~~--~~~~~~~~~~~~~~ 136 (185)
T cd04179 73 AGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLE--------------GGADVVIGSRFVRGGG--AGMPLLRRLGSRLF 136 (185)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhc--------------cCCcEEEEEeecCCCc--ccchHHHHHHHHHH
Confidence 9999999999999999999999999999998665 3568888887654432 22333444444444
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHH
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIA 302 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra 302 (569)
...........+....+++.+++|++++++..+...++|.+|.|++.|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~~~~~~~~~~ 185 (185)
T cd04179 137 NFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLVGA 185 (185)
T ss_pred HHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcceeeEeeecC
Confidence 4444444556677788889999999999995455668888899888764
No 29
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=2.6e-23 Score=199.84 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=141.3
Q ss_pred ccEEEEEeecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHH-HHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 90 VNLSVIVPAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTM-QVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 90 p~VSVIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~-eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
|++|||||+||++ +.++++|+|+++| .|+ ++||+||||||+|++. ++++++..+. ++++++.+++|.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q------~~~--~~eiivvd~gs~d~~~~~~~~~~~~~~--~~~~~~~~~~~~g 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQ------TYP--NWELCIADDASTDPEVKRVLKKYAAQD--PRIKVVFREENGG 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhC------cCC--CeEEEEEeCCCCChHHHHHHHHHHhcC--CCEEEEEcccCCC
Confidence 4699999999999 9999999999987 444 6899999999999865 4556655554 6788888899999
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHH
Q psy7267 168 KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRN 247 (569)
Q Consensus 168 ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~ 247 (569)
++.|+|.|++.+++||++++|+|+.++|++++++++.+.++ ++.+++++................
T Consensus 71 ~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~-- 135 (202)
T cd04184 71 ISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEH-------------PDADLIYSDEDKIDEGGKRSEPFF-- 135 (202)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhC-------------CCCCEEEccHHhccCCCCEecccc--
Confidence 99999999999999999999999999999999999999554 455677664432221111111000
Q ss_pred HhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCch--hhchHHHHHHHHcCCCEEEEEE
Q psy7267 248 ILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW--AFDVELLFIAEVLHIPMAEVSV 314 (569)
Q Consensus 248 ~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~--~~D~EL~~Ra~~~G~rI~~vPv 314 (569)
..... ...... ....+++.++||++++++ +.+++.+ .+|.||+.|+.++|+++.++|.
T Consensus 136 --~~~~~--~~~~~~---~~~~~~~~~~~r~~~~~i--ggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 136 --KPDWS--PDLLLS---QNYIGHLLVYRRSLVRQV--GGFREGFEGAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred --CCCCC--HHHhhh---cCCccceEeEEHHHHHHh--CCCCcCcccchhHHHHHHHHhccceEEEccH
Confidence 00000 000000 123456679999999999 4444433 4699999999999999999984
No 30
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.90 E-value=1e-22 Score=211.94 Aligned_cols=226 Identities=19% Similarity=0.149 Sum_probs=157.0
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEE-EcCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGL-KLLKNR 166 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi-~~~~n~ 166 (569)
..+++|||||+|||++.|.++|+++.+++.. ...+|||||||||+|+|.++++++..+.- ....++ .++.|.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~------~~~~EIIVVDDgStD~T~~ia~~~~~~v~-~~~~~~~~~~~n~ 101 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME------PLVDELIVIDSGSTDATAERAAAAGARVV-SREEILPELPPRP 101 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc------CCCcEEEEEeCCCccHHHHHHHHhcchhh-cchhhhhccccCC
Confidence 4678999999999999999999999987532 12579999999999999999998754320 111222 236789
Q ss_pred ChHHHHHHHHHhccCcEEEEEcCCCC-CChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccc-cc----ch
Q psy7267 167 GKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEA-LA----NV 240 (569)
Q Consensus 167 Gka~AlN~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~-~~----~~ 240 (569)
||+.|+|.|++.+++|+|+++|+|+. ++|++++++++.+..+ +++++|.|.+..... .. ..
T Consensus 102 Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~-------------~~~~~V~g~~~r~~~~~~~~~~~~ 168 (306)
T PRK13915 102 GKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTD-------------PGVHLVKAFYRRPLRVSGGVDATG 168 (306)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhC-------------CCceEEEEEeccccccccccCcCC
Confidence 99999999999999999999999996 8999999999999753 567888886432110 00 00
Q ss_pred hhHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHH-cCC-CEEEEEEEEEE
Q psy7267 241 QRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEV-LHI-PMAEVSVNWTE 318 (569)
Q Consensus 241 ~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~-~G~-rI~~vPv~~~~ 318 (569)
.....+......+..+... ...+.++.+|++++||++++++ .. ..+|.+|++++..+.+ .|. ++.++++..+.
T Consensus 169 ~gr~~~~~~~~l~~~~~~~--l~~i~dp~sG~~a~rr~~l~~l--~~-~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~ 243 (306)
T PRK13915 169 GGRVTELVARPLLNLLRPE--LAGFVQPLGGEYAGRRELLESL--PF-VPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRA 243 (306)
T ss_pred CCchHHHHHHHHHHHHHHh--hhcccCcchHhHHHHHHHHHhC--CC-CCCCeehHHHHHHHHHHhCcCceEEEEecccc
Confidence 0001111111111111111 1256688889999999999998 33 3668889999998874 687 89999876655
Q ss_pred ecCCccchhHHHHHHHHHHHHHH
Q psy7267 319 IEGSKIVPVFSWIQMGWDVLNIW 341 (569)
Q Consensus 319 ~~GS~~~~~~~~~~~~~~~l~~r 341 (569)
+.. .+.+...+|....+...
T Consensus 244 h~~---~~~~~~~~m~~~i~~~~ 263 (306)
T PRK13915 244 HRN---QPLRALGRMARQIIATA 263 (306)
T ss_pred cCC---CCHHHHHHHHHHHHHHH
Confidence 542 23445555555555443
No 31
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.90 E-value=7.1e-23 Score=215.02 Aligned_cols=206 Identities=20% Similarity=0.222 Sum_probs=146.3
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCCh
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGK 168 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gk 168 (569)
.|.||||||+||+++.|++||+|+++| .|+ ++|||||||||+|+|.++++++.+++ +++++++ .+|.|.
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Q------t~~--~~EIIiVdDgStD~t~~i~~~~~~~~--~~i~vi~-~~n~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQ------TWT--ALEIIIVNDGSTDNSVEIAKHYAENY--PHVRLLH-QANAGV 73 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhC------CCC--CeEEEEEeCCCCccHHHHHHHHHhhC--CCEEEEE-CCCCCh
Confidence 477999999999999999999999988 454 78999999999999999999998877 7899987 579999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHH--H
Q psy7267 169 GGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFF--R 246 (569)
Q Consensus 169 a~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~--r 246 (569)
+.|+|.|++.|+||||+++|+|+.+.|++++++++.+++ ++.|++.+.......++....... .
T Consensus 74 ~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~--------------~~~dvv~~~~~~~~~~~~~~~~~~~~~ 139 (328)
T PRK10073 74 SVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALE--------------DDLDVAQCNADWCFRDTGETWQSIPSD 139 (328)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHh--------------CCCCEEEEccEEEEeCCCccccccccc
Confidence 999999999999999999999999999999999998876 345666654321111110000000 0
Q ss_pred HH----hhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccc-cCCch-hhchHHHHHHHHcCCCEEEEE---EEEE
Q psy7267 247 NI----LMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSI-HVQRW-AFDVELLFIAEVLHIPMAEVS---VNWT 317 (569)
Q Consensus 247 ~~----~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~-~~e~~-~~D~EL~~Ra~~~G~rI~~vP---v~~~ 317 (569)
.. ......++............ ....++||+++++. +. +.++. .+|.++..++...+.++.+++ +.|+
T Consensus 140 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~l~Rr~~l~~~--~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~ly~Yr 216 (328)
T PRK10073 140 RLRSTGVLSGPDWLRMALSSRRWTHV-VWLGVYRRDFIVKN--NIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSLYKYY 216 (328)
T ss_pred cccccceechHHHHHHHHhhCCCCcc-HhHHHHHHHHHHHc--CCccCCCCEeccHHHHHHHHHHCCEEEEECCCEEEEE
Confidence 00 00001111111111122221 23468999999986 32 22332 369999999999999999886 4555
Q ss_pred EecCC
Q psy7267 318 EIEGS 322 (569)
Q Consensus 318 ~~~GS 322 (569)
.+.+|
T Consensus 217 ~~~~S 221 (328)
T PRK10073 217 LHDTS 221 (328)
T ss_pred ecCCc
Confidence 56653
No 32
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.90 E-value=2.3e-22 Score=221.16 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=155.7
Q ss_pred CCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC--
Q psy7267 87 EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK-- 164 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~-- 164 (569)
.+.|+++|+||+|||+++|+++|+++++++ +|| ++||+|+||+|+|+|.+.++++.+++ ++++++..++
T Consensus 63 ~~~p~vaIlIPA~NE~~vI~~~l~s~L~~l-----dY~--~~eIiVv~d~ndd~T~~~v~~l~~~~--p~v~~vv~~~~g 133 (504)
T PRK14716 63 VPEKRIAIFVPAWREADVIGRMLEHNLATL-----DYE--NYRIFVGTYPNDPATLREVDRLAARY--PRVHLVIVPHDG 133 (504)
T ss_pred CCCCceEEEEeccCchhHHHHHHHHHHHcC-----CCC--CeEEEEEECCCChhHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 346789999999999999999999976541 676 78999999999999999999999888 5566544333
Q ss_pred CCChHHHHHHHHHhc------cC---cEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecc
Q psy7267 165 NRGKGGAVTLGTKCA------RG---SIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLE 235 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A------~g---d~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~ 235 (569)
..||+.|+|.|++.+ +| |+|+++|||+.++|+.++.+...+.+ .++++......+
T Consensus 134 p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~----------------~~~VQ~pv~~~~ 197 (504)
T PRK14716 134 PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPR----------------HDFVQLPVFSLP 197 (504)
T ss_pred CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCC----------------CCEEecceeccC
Confidence 346999999999764 45 99999999999999999987655433 244443222111
Q ss_pred c--ccchhhHHHHHHhhhhhhhH-hhhcccccccccccceeeEeHHHHHHHh---cc--ccCCchhhchHHHHHHHHcCC
Q psy7267 236 A--LANVQRSFFRNILMKGFHFI-VWFTGVRTIRDTQCGFKLFTRKSALQLF---SS--IHVQRWAFDVELLFIAEVLHI 307 (569)
Q Consensus 236 ~--~~~~~~~~~r~~~~~~~~~l-~~~~~~~~i~d~~~gf~lfrR~al~~I~---~~--~~~e~~~~D~EL~~Ra~~~G~ 307 (569)
. ...........+.......+ .+...+ ......|...+|||++++++. ++ +..+...||+|+..|+..+|+
T Consensus 198 ~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG-~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~ 276 (504)
T PRK14716 198 RDWGEWVAGTYMDEFAESHLKDLPVREALG-GLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGF 276 (504)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCC
Confidence 1 11111111111111111111 111122 112233456799999999982 22 444568899999999999999
Q ss_pred CEEEEEEEEEE--ec----CCccchhHHHHHHHHHHHHHHHHhcchh
Q psy7267 308 PMAEVSVNWTE--IE----GSKIVPVFSWIQMGWDVLNIWLHYTLGL 348 (569)
Q Consensus 308 rI~~vPv~~~~--~~----GS~~~~~~~~~~~~~~~l~~r~ry~~g~ 348 (569)
++.++|..... .. +..+.........++...+||.||..|+
T Consensus 277 rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi 323 (504)
T PRK14716 277 RQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGI 323 (504)
T ss_pred EEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhch
Confidence 99999865322 00 1111111122334578899999999995
No 33
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.90 E-value=5.6e-23 Score=197.63 Aligned_cols=192 Identities=18% Similarity=0.185 Sum_probs=140.9
Q ss_pred EEEEeecCCCC--ChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC-CccHHHHHHHHhHhhCCCeEEEEEcCCCCChH
Q psy7267 93 SVIVPAYNEQD--RLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS-TDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKG 169 (569)
Q Consensus 93 SVIIP~yNE~~--~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS-tD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka 169 (569)
||+||+||++. .|+++|+|+++| .|+ +.||||||||| +|+|.++++++.+++ + ++++.+++|.|++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q------~~~--~~eiiivdd~ss~d~t~~~~~~~~~~~--~-i~~i~~~~n~G~~ 69 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQ------TLP--PDEVVLVKDGPVTQSLNEVLEEFKRKL--P-LKVVPLEKNRGLG 69 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhc------CCC--CcEEEEEECCCCchhHHHHHHHHHhcC--C-eEEEEcCccccHH
Confidence 69999999984 899999999988 555 57999999998 788999999988775 3 8889989999999
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHh
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNIL 249 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~ 249 (569)
.|+|.|+++++||||+++|+|+.++|++++.+++.++++ ++.+++.|........+....... ..
T Consensus 70 ~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~--~~ 134 (201)
T cd04195 70 KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKN-------------PEIDIVGGGVLEFDSDGNDIGKRR--LP 134 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhC-------------CCeEEEcccEEEECCCCCeecccc--CC
Confidence 999999999999999999999999999999999999875 455666665443322221111000 00
Q ss_pred hhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEEEEE
Q psy7267 250 MKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSV 314 (569)
Q Consensus 250 ~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv 314 (569)
............... ..++..++||++++++ ++.....+.+|.++..|+..+|+++.++|.
T Consensus 135 ~~~~~~~~~~~~~~~---~~~~~~~~rr~~~~~~-g~~~~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 135 TSHDDILKFARRRSP---FNHPTVMFRKSKVLAV-GGYQDLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred CCHHHHHHHhccCCC---CCChHHhhhHHHHHHc-CCcCCCCCchHHHHHHHHHHcCCceecccH
Confidence 000000000011111 2234568999999998 333334677899999999999999998873
No 34
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=3.4e-22 Score=192.88 Aligned_cols=194 Identities=19% Similarity=0.155 Sum_probs=139.7
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHH
Q psy7267 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAV 172 (569)
Q Consensus 93 SVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~Al 172 (569)
|||||+||+++.|+++|+|+++| +|| ++|||||||||+|+|.++++++.++++ ..++++..++|.|++.++
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q------~~~--~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~ 71 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQ------TYK--NDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNF 71 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhC------cCC--CeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHH
Confidence 68999999999999999999997 555 789999999999999999999988774 467788888999999999
Q ss_pred HHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccccc-chhhHHHHHHhhh
Q psy7267 173 TLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALA-NVQRSFFRNILMK 251 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~-~~~~~~~r~~~~~ 251 (569)
|.|++.++||||+++|+|+.++|++|.++++.+... +..+++.+.....+.+. .............
T Consensus 72 n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (214)
T cd04196 72 ESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKD-------------DKPLLVYSDLELVDENGNPIGESFFEYQKIK 138 (214)
T ss_pred HHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcC-------------CCceEEecCcEEECCCCCCcccccccccccC
Confidence 999999999999999999999999999999996654 45566666543322221 1111111110000
Q ss_pred hhhhHhhhcccccccccccceeeEeHHHHHHHhccccCC--chhhchHHHHHHHHcCCCEEEEEE
Q psy7267 252 GFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQ--RWAFDVELLFIAEVLHIPMAEVSV 314 (569)
Q Consensus 252 ~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e--~~~~D~EL~~Ra~~~G~rI~~vPv 314 (569)
............ ...++..++||++++++ +...+ .+.+|.++..++.+ +.++..+|.
T Consensus 139 ~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~--~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~ 197 (214)
T cd04196 139 PGTSFNNLLFQN---VVTGCTMAFNRELLELA--LPFPDADVIMHDWWLALLASA-FGKVVFLDE 197 (214)
T ss_pred CccCHHHHHHhC---ccCCceeeEEHHHHHhh--ccccccccccchHHHHHHHHH-cCceEEcch
Confidence 000011111111 12234569999999998 33333 46678888887777 668888764
No 35
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.88 E-value=1.5e-21 Score=185.36 Aligned_cols=169 Identities=27% Similarity=0.398 Sum_probs=134.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+++.|.++++++.+++.+ .+ ..+||+||||||+|+|.++++++.+++ ++++++.+.+|.|++.|+|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~---~~--~~~eiivvdd~s~d~t~~~~~~~~~~~--~~i~~i~~~~n~G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLES---LG--YDYEIIFVDDGSTDRTLEILRELAARD--PRVKVIRLSRNFGQQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHh---cC--CCeEEEEEeCCCCccHHHHHHHHHhhC--CCEEEEEecCCCCcHHHHH
Confidence 6999999999999999999887664 12 278999999999999999999998776 6899999899999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.+++|+|+++|+|+.+++++++++++.+++ +.++|.|.+.... . .....+.....
T Consensus 74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~---------------~~~~v~g~~~~~~-~-----~~~~~~~~~~~ 132 (181)
T cd04187 74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEE---------------GYDVVYGVRKNRK-E-----SWLKRLTSKLF 132 (181)
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhC---------------CCcEEEEEecCCc-c-----hHHHHHHHHHH
Confidence 9999999999999999999999999999998543 4578888876433 2 12223333333
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCch
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW 292 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~ 292 (569)
...........+.+..+++++++|++++++ +..++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i--~~~d~~~ 169 (181)
T cd04187 133 YRLINKLSGVDIPDNGGDFRLMDRKVVDAL--LLLPERH 169 (181)
T ss_pred HHHHHHHcCCCCCCCCCCEEEEcHHHHHHH--HhcCCCC
Confidence 333334455677888899999999999999 4444433
No 36
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.88 E-value=6.8e-21 Score=192.48 Aligned_cols=191 Identities=17% Similarity=0.133 Sum_probs=132.8
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChH
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKG 169 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka 169 (569)
|.||||||+||+++.|+++|+|+.++... +..++|||||||||+|+|.++++++.++ .+++++.. +|.|.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~-----~~~~~EiIVvDdgStD~t~~i~~~~~~~---~~i~~i~~-~~~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQD-----PGISFEWIVVDGGSNDGTREFLENLNGI---FNLRFVSE-PDNGIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhC-----CCCCEEEEEEECcCcccHHHHHHHhccc---CCEEEEEC-CCCCHH
Confidence 56999999999999999999999876432 2237899999999999999999987543 35888874 577999
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccccc-chhhHHHHHH
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALA-NVQRSFFRNI 248 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~-~~~~~~~r~~ 248 (569)
.|+|.|++.|+||||+++|+|+.+.|+.++.+ ..+... +..++++|.+....+++ ...+.....
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~-~~~~~~-------------~~~~~v~g~~~~~~~~~~~~~~~~~~~- 136 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANFV-RQLKMQ-------------KDNAMIIGDALLDFGDGHKIKRSAKPG- 136 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCcCHHHHH-HHHHhC-------------CCCeEEEeeeEEEcCCCcEEEEccCCh-
Confidence 99999999999999999999999999876543 344332 33467777765322111 100000000
Q ss_pred hhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCC--chhhchHHHHHHHHcCCCEEEEEEEEEE
Q psy7267 249 LMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQ--RWAFDVELLFIAEVLHIPMAEVSVNWTE 318 (569)
Q Consensus 249 ~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e--~~~~D~EL~~Ra~~~G~rI~~vPv~~~~ 318 (569)
.. ...... ......+++|+.++.. + +++ .+.+|.|+..|+...|+++.++|.....
T Consensus 137 -----~~---~~~~~~---~~~~~~~~~~~~~~~~--~-fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~ 194 (248)
T PRK10063 137 -----WY---IYHSLP---ASHQAIFFPVSGLKKW--R-YDLQYKVSSDYALAARLYKAGYAFKKLNGLVSE 194 (248)
T ss_pred -----hH---HhcCCC---CCCcEEEEEHHHHhcC--C-CCcccchHHhHHHHHHHHHcCCcEEEcCceeEE
Confidence 00 000001 1112347788887753 2 233 3457999999999999999999865444
No 37
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.88 E-value=4.7e-22 Score=199.69 Aligned_cols=201 Identities=16% Similarity=0.032 Sum_probs=139.4
Q ss_pred EEEeecCCC-CChHHHHHHHHHHHHhhhccCC--------CCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC
Q psy7267 94 VIVPAYNEQ-DRLKPMLDETIEFLNERRKKIP--------TFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK 164 (569)
Q Consensus 94 VIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp--------~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~ 164 (569)
||||+|||+ ..|+++|+|+++| +|| .+++||+||||||+| .
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q------~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~ 50 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKN------DYPFCARGGDSWKKIVVCVIFDGAIK------------------------K 50 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHh------hHHHHhcCCCCccEEEEEEEeCCccc------------------------c
Confidence 699999997 7999999999999 888 779999999999999 3
Q ss_pred CCChHH-------HHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc
Q psy7267 165 NRGKGG-------AVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL 237 (569)
Q Consensus 165 n~Gka~-------AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~ 237 (569)
|.||+. ++|.++..+++|+|+++|+|+.++|++|.++++.|..+ ++++.|.|.....+..
T Consensus 51 ~~gk~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~-------------p~vg~v~g~~~~~~~~ 117 (244)
T cd04190 51 NRGKRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKD-------------PEIGGVCGEIHPMGKK 117 (244)
T ss_pred cCcchHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhC-------------CCEEEEEeeeEEcCCc
Confidence 455554 67888888999999999999999999999999999754 4566677765433321
Q ss_pred -cchhhHHHHHHh-hhhhhhHhhhcccccccccccceeeEeHHHHHHHhcccc------------C-------Cchhhch
Q psy7267 238 -ANVQRSFFRNIL-MKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIH------------V-------QRWAFDV 296 (569)
Q Consensus 238 -~~~~~~~~r~~~-~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~------------~-------e~~~~D~ 296 (569)
+.........+. ............+ ......|.+.+||+++++++..... . ....+|.
T Consensus 118 ~~~~~~~q~~ey~~~~~~~~~~~s~~g-~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~ 196 (244)
T cd04190 118 QGPLVMYQVFEYAISHWLDKAFESVFG-FVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDR 196 (244)
T ss_pred chhHHHhHheehhhhhhhcccHHHcCC-ceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhccc
Confidence 211111100000 0000000011111 1233445678999999998722111 0 1246799
Q ss_pred HHHHHHHHcCCCEEE--EEEE--EEEecCCccchhHHHHHHHHHHHHHHHHhcchhh
Q psy7267 297 ELLFIAEVLHIPMAE--VSVN--WTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLW 349 (569)
Q Consensus 297 EL~~Ra~~~G~rI~~--vPv~--~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w 349 (569)
+|+.++..+|+++.+ .|.. +++.+.|. +.+++||.||..|.+
T Consensus 197 ~l~~~l~~~G~~~~~~~~~~a~~~~~~p~s~-----------~~~~~QR~RW~~g~~ 242 (244)
T cd04190 197 ILCTLLLKAGPKRKYLYVPGAVAETDVPETF-----------VELLSQRRRWINSTI 242 (244)
T ss_pred ceeHHHhccCCccEEEEecccEEEEECCCCH-----------HHHHHHhHhhhcccc
Confidence 999999999999998 7744 34433344 678899999988864
No 38
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=9.8e-22 Score=186.76 Aligned_cols=188 Identities=20% Similarity=0.198 Sum_probs=137.6
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHH
Q psy7267 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAV 172 (569)
Q Consensus 93 SVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~Al 172 (569)
|||||+||+++.|+++|+++.+| .++ ++||+||||||+|+|.++++++..+ +..+.+.+|.|++.|+
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q------~~~--~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQ------TYP--NIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhC------CCC--CceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHH
Confidence 68999999999999999999887 444 5899999999999999999987543 3344558899999999
Q ss_pred HHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhh
Q psy7267 173 TLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKG 252 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~ 252 (569)
|.|++.|++|||+++|+|+.+.++++.+++..+... ++.+++.|.......+........ ..
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~-------------~~~~~v~g~~~~~~~~~~~~~~~~-----~~ 129 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEH-------------PEVDVVYGDVLLVDENGRVIGRRR-----PP 129 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhC-------------CCccEEEeeeEEEcCCCCcccCCC-----Cc
Confidence 999999999999999999999999999999776664 567888887654332221111000 00
Q ss_pred hhhHhhhcccccccccccceeeEeHHHHHHHhccccCCc--hhhchHHHHHHHHcCCCEEEEEEEE
Q psy7267 253 FHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQR--WAFDVELLFIAEVLHIPMAEVSVNW 316 (569)
Q Consensus 253 ~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~--~~~D~EL~~Ra~~~G~rI~~vPv~~ 316 (569)
............ ..+...+++|++++++ +.+++. +.+|.|++.|+.+.|+++..+|...
T Consensus 130 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~ 190 (202)
T cd06433 130 PFLDKFLLYGMP---ICHQATFFRRSLFEKY--GGFDESYRIAADYDLLLRLLLAGKIFKYLPEVL 190 (202)
T ss_pred chhhhHHhhcCc---ccCcceEEEHHHHHHh--CCCchhhCchhhHHHHHHHHHcCCceEecchhh
Confidence 000000111111 1123358999999998 434443 4569999999999999998887543
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.87 E-value=1e-21 Score=187.70 Aligned_cols=176 Identities=20% Similarity=0.176 Sum_probs=123.0
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+|||++.|.++|+++.+| +||...+||+||||||+|+|.++++++. ..+.+....+|.||+.|+|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~------~~p~~~~eiivvdd~s~D~t~~~~~~~~-----~~~~~~~~~~~~gk~~aln 69 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQ------DYPRELYRIFVVADNCTDDTAQVARAAG-----ATVLERHDPERRGKGYALD 69 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhc------CCCCcccEEEEEeCCCCchHHHHHHHcC-----CeEEEeCCCCCCCHHHHHH
Confidence 6999999999999999999887 7777789999999999999999987753 2344444467889999999
Q ss_pred HHHHhcc-----CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc-cchhhHH-HH
Q psy7267 174 LGTKCAR-----GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL-ANVQRSF-FR 246 (569)
Q Consensus 174 ~Gl~~A~-----gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~-~~~~~~~-~r 246 (569)
.|++.+. +|+++++|+|+.++|+++.++++.+.+. .+++.|.+.....+ ++..+.. ..
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~---------------~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAG---------------ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhC---------------CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 9999874 9999999999999999999999999762 36777766543322 2211111 00
Q ss_pred HHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHH
Q psy7267 247 NILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVEL 298 (569)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL 298 (569)
...........+...+..... .++..+|||+++++. ++......+|+||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~G~~~~~rr~~l~~~--g~~~~~l~ED~~~ 183 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQL-GGTGMCFPWAVLRQA--PWAAHSLTEDLEF 183 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeee-cCchhhhHHHHHHhC--CCCCCCcccccCC
Confidence 100111111111112212222 334458999999994 6666667788774
No 40
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.87 E-value=2.1e-20 Score=189.64 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=156.0
Q ss_pred EEEEEeecCCCCC-hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHH----HHHHHhHhhC-CCeEEEEEcCCC
Q psy7267 92 LSVIVPAYNEQDR-LKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQ----VVHQYTEKCG-EDIVRGLKLLKN 165 (569)
Q Consensus 92 VSVIIP~yNE~~~-I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~e----il~~~~~~~~-~~~V~vi~~~~n 165 (569)
|||+||+|||+.. +.++|+++.+.+..+ +| +.++||+|+||+++++... .++++.++++ ..++++++.++|
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~--~~-~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~ 77 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKT--GL-ADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRREN 77 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhc--CC-cCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 6999999999987 888888888765543 33 2379999999987765432 2233444443 267888998888
Q ss_pred CC-hHHHHHHHHHh--ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhh
Q psy7267 166 RG-KGGAVTLGTKC--ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQR 242 (569)
Q Consensus 166 ~G-ka~AlN~Gl~~--A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~ 242 (569)
.| |++++|.+++. +++|+|+++|||..++|++|.++++.+.++ +++++|++.....+.+++..+
T Consensus 78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~-------------~~vg~vq~~~~~~n~~~~~~~ 144 (254)
T cd04191 78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEAN-------------PRAGIIQTAPKLIGAETLFAR 144 (254)
T ss_pred CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhC-------------CCEEEEeCCceeECCCCHHHH
Confidence 77 88999999987 788999999999999999999999999864 577888776554444443222
Q ss_pred HHHHHHhhhhhh-hHhh--hcccccccccccceeeEeHHHHHHH--h------ccccCCchhhchHHHHHHHHcCCCEEE
Q psy7267 243 SFFRNILMKGFH-FIVW--FTGVRTIRDTQCGFKLFTRKSALQL--F------SSIHVQRWAFDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 243 ~~~r~~~~~~~~-~l~~--~~~~~~i~d~~~gf~lfrR~al~~I--~------~~~~~e~~~~D~EL~~Ra~~~G~rI~~ 311 (569)
.. .+....+. .+.. .....+.....|...++||++++++ + +++..+...+|+++..++..+||++.+
T Consensus 145 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~ 222 (254)
T cd04191 145 LQ--QFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRL 222 (254)
T ss_pred HH--HHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEE
Confidence 11 11111110 0000 0000111222344579999999985 1 122234567899999999999999999
Q ss_pred EEEEE---EEecCCccchhHHHHHHHHHHHHHHHHhcchhhH
Q psy7267 312 VSVNW---TEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWK 350 (569)
Q Consensus 312 vPv~~---~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~ 350 (569)
.|... .+.+.+. ..+++++.||..|.++
T Consensus 223 ~~~~~~~~~~~p~~~-----------~~~~~qr~RW~~G~~q 253 (254)
T cd04191 223 APDLEGSYEECPPTL-----------IDFLKRDRRWCQGNLQ 253 (254)
T ss_pred ccCCcceEeECCCCH-----------HHHHHHHHHHHhhcCc
Confidence 98643 2223333 6778899999888753
No 41
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=5.5e-21 Score=184.37 Aligned_cols=166 Identities=22% Similarity=0.201 Sum_probs=136.2
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+++.|+++|+|+++| ++| ..|||||||||+|+|.++++++.+.+ +++++..++|.|.+.++|
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q------~~~--~~eiiivD~~s~d~t~~~~~~~~~~~---~i~~~~~~~n~g~~~~~n 69 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQ------TRP--PDHIIVIDNASTDGTAEWLTSLGDLD---NIVYLRLPENLGGAGGFY 69 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhc------cCC--CceEEEEECCCCcchHHHHHHhcCCC---ceEEEECccccchhhHHH
Confidence 6999999999999999999887 555 57999999999999999999987654 388899999999999999
Q ss_pred HHHHhc---cCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhh
Q psy7267 174 LGTKCA---RGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILM 250 (569)
Q Consensus 174 ~Gl~~A---~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~ 250 (569)
.|++.+ ++|+++++|+|+.++|++++++++.+++ ++.+++.+.+...+.
T Consensus 70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~--------------~~~~~~~~~~~~~~~-------------- 121 (202)
T cd04185 70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYADK--------------DNPQFLAPLVLDPDG-------------- 121 (202)
T ss_pred HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHhc--------------CCceEecceeEcCCC--------------
Confidence 999876 6899999999999999999999999984 456777766543221
Q ss_pred hhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCc---hhhchHHHHHHHHcCCCEEEEEEEEEEe
Q psy7267 251 KGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQR---WAFDVELLFIAEVLHIPMAEVSVNWTEI 319 (569)
Q Consensus 251 ~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~---~~~D~EL~~Ra~~~G~rI~~vPv~~~~~ 319 (569)
..+..+++|++++++ +...+. +.+|.|++.|+.++|+++ ++|.....+
T Consensus 122 ------------------~~~~~~~~~~~~~~~--g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h 172 (202)
T cd04185 122 ------------------SFVGVLISRRVVEKI--GLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVH 172 (202)
T ss_pred ------------------ceEEEEEeHHHHHHh--CCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEE
Confidence 112358999999998 444433 456999999999999999 887544433
No 42
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.86 E-value=5.1e-20 Score=210.22 Aligned_cols=240 Identities=14% Similarity=0.046 Sum_probs=159.6
Q ss_pred CCCCCCCCccEEEEEeecCCCCChHHHHHHHHH-HHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEE
Q psy7267 82 PSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIE-FLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGL 160 (569)
Q Consensus 82 p~~~~~~~p~VSVIIP~yNE~~~I~~~L~sll~-~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi 160 (569)
+.+.....|+|||+||+|||+.+++++++++++ + +|| ++||++++|+++|+|.++++++.+++ ++++++
T Consensus 55 ~~l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~l------dYP--~~eI~vi~~~nD~~T~~~~~~l~~~~--p~~~~v 124 (727)
T PRK11234 55 RELYKPDEKPLAIMVPAWNETGVIGNMAELAATTL------DYE--NYHIFVGTYPNDPATQADVDAVCARF--PNVHKV 124 (727)
T ss_pred hhcccCCCCCEEEEEecCcchhhHHHHHHHHHHhC------CCC--CeEEEEEecCCChhHHHHHHHHHHHC--CCcEEE
Confidence 334455668899999999999999999999874 3 888 59999999999999999999999988 556655
Q ss_pred EcCC--CCChHHHHHHHHHhc---------cCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEe
Q psy7267 161 KLLK--NRGKGGAVTLGTKCA---------RGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVG 229 (569)
Q Consensus 161 ~~~~--n~Gka~AlN~Gl~~A---------~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G 229 (569)
..++ |.||+.|+|.|++.+ +.+++++.|||+.++|+.|+ +++.+.+ +. ++|++
T Consensus 125 ~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~--------------~~-~~VQ~ 188 (727)
T PRK11234 125 VCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE--------------RK-DLIQI 188 (727)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC--------------CC-CeEee
Confidence 4444 789999999999987 34678889999999999998 5566654 22 66666
Q ss_pred eeeecccc--cchhhHHHHHHhhhhhh-hHhhhcccccccccccceeeE-eH--HHHHHHhc--cccCCchhhchHHHHH
Q psy7267 230 SRAHLEAL--ANVQRSFFRNILMKGFH-FIVWFTGVRTIRDTQCGFKLF-TR--KSALQLFS--SIHVQRWAFDVELLFI 301 (569)
Q Consensus 230 ~r~~~~~~--~~~~~~~~r~~~~~~~~-~l~~~~~~~~i~d~~~gf~lf-rR--~al~~I~~--~~~~e~~~~D~EL~~R 301 (569)
.....+.. ......+...+...... ...+...+..+ ...|...+| || +++.++-+ .+..+..++|+|+..|
T Consensus 189 p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~-~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~r 267 (727)
T PRK11234 189 PVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQV-PSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFR 267 (727)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCc-ccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHH
Confidence 54322111 11111111122111111 11222222222 233334577 55 45667622 2556788899999999
Q ss_pred HHHcCCCEEEEEEEEEE-------e-cC-Cc-----cchhHHHHHHHHHHHHHHHHhcchh
Q psy7267 302 AEVLHIPMAEVSVNWTE-------I-EG-SK-----IVPVFSWIQMGWDVLNIWLHYTLGL 348 (569)
Q Consensus 302 a~~~G~rI~~vPv~~~~-------~-~G-S~-----~~~~~~~~~~~~~~l~~r~ry~~g~ 348 (569)
+..+|+++.+.|..... + .| +. ...+......++...+||.||..|.
T Consensus 268 L~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~ 328 (727)
T PRK11234 268 LKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGI 328 (727)
T ss_pred HHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHccc
Confidence 99999999998843321 0 11 10 1122233456688888999998886
No 43
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.86 E-value=2.3e-20 Score=191.87 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=98.0
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCCh
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGK 168 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gk 168 (569)
.|.||||||+||+++.|.++|+|+++| .|| ++|||||||||+| .++++++.+++.+++++++++++|.|.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Q------t~~--~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~ 73 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQ------DYS--NWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGA 73 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhC------CCC--CeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 577999999999999999999999998 555 7899999999995 456666665544478999999999999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 169 GGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 169 a~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
+.|+|.|++.|+||||+++|+|+.+.|+.|+.+++.+.+.
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~ 113 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQL 113 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988764
No 44
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.86 E-value=1.9e-21 Score=178.16 Aligned_cols=167 Identities=29% Similarity=0.355 Sum_probs=121.0
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHH
Q psy7267 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAV 172 (569)
Q Consensus 93 SVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~Al 172 (569)
|||||+||+++.|.++|+|+++|.. + .+||+||||||+|+|.++++++.+.. .+++++++++|.|++.|+
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~------~--~~eiivvdd~s~d~~~~~~~~~~~~~--~~i~~i~~~~n~g~~~~~ 70 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTD------P--DFEIIVVDDGSTDETEEILEEYAESD--PNIRYIRNPENLGFSAAR 70 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSG------C--EEEEEEEECS-SSSHHHHHHHHHCCS--TTEEEEEHCCCSHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccC------C--CEEEEEeccccccccccccccccccc--cccccccccccccccccc
Confidence 7999999999999999999999822 2 78999999999999999999987633 789999999999999999
Q ss_pred HHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHH-HHhhh
Q psy7267 173 TLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFR-NILMK 251 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r-~~~~~ 251 (569)
|.|+++|+++|++++|+|+.+.|++++++++.+++. +.+++.+................. .....
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKN--------------PPDVVIGSVIYIDDDNRYPDRRLRFSFWNR 136 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHC--------------TTEEEEEEEEEEECTTETEECCCTSEEEEC
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhC--------------CCcEEEEEEEEecCCccccccccchhhhhh
Confidence 999999999999999999999999999999999983 457777766544322211111100 00011
Q ss_pred hhhhHhhhcccccccccccceeeEeHHHHHHH
Q psy7267 252 GFHFIVWFTGVRTIRDTQCGFKLFTRKSALQL 283 (569)
Q Consensus 252 ~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I 283 (569)
..................+++.++||++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 137 FERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp CHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred hhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 11111112222234445557789999999986
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.85 E-value=2.1e-20 Score=176.62 Aligned_cols=168 Identities=19% Similarity=0.231 Sum_probs=127.0
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+++.|+++|+++.+| +|+ ++||+||||+|+|+|.++++++.+..+...+.+.+.+.+.|++.++|
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q------~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQ------SIL--PFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRN 72 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhc------cCC--CCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHH
Confidence 6999999999999999999987 333 68999999999999999999887654323344445445568999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.|++|||+++|+|+.++|++++++++.+.. + ..+.|.+.........
T Consensus 73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~---------------~-~~v~g~~~~~~~~~~~------------- 123 (182)
T cd06420 73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP---------------G-VFLSGSRVLLNEKLTE------------- 123 (182)
T ss_pred HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC---------------C-cEEecceeecccccce-------------
Confidence 9999999999999999999999999999988732 2 3555665543322110
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCch----hhchHHHHHHHHcCCCEEEE
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW----AFDVELLFIAEVLHIPMAEV 312 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~----~~D~EL~~Ra~~~G~rI~~v 312 (569)
....++..+++|+.+.++ +.+++.+ .+|+|++.|+.++|++...+
T Consensus 124 ------------~~~~~~~~~~~r~~~~~~--ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~ 172 (182)
T cd06420 124 ------------RGIRGCNMSFWKKDLLAV--NGFDEEFTGWGGEDSELVARLLNSGIKFRKL 172 (182)
T ss_pred ------------eEeccceEEEEHHHHHHh--CCCCcccccCCcchHHHHHHHHHcCCcEEEe
Confidence 112234557888888887 4444332 46999999999999776655
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.85 E-value=1.3e-20 Score=185.75 Aligned_cols=193 Identities=17% Similarity=0.091 Sum_probs=129.5
Q ss_pred EEEeecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHH
Q psy7267 94 VIVPAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAV 172 (569)
Q Consensus 94 VIIP~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~Al 172 (569)
+|||+||++ +.|.++|+|+++| ..|||||||+|+|.+.+..+. .. .+++++..++|.|++.|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q-----------~~~iivvDn~s~~~~~~~~~~---~~--~~i~~i~~~~n~G~~~a~ 64 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ-----------VDKVVVVDNSSGNDIELRLRL---NS--EKIELIHLGENLGIAKAL 64 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc-----------CCEEEEEeCCCCccHHHHhhc---cC--CcEEEEECCCceehHHhh
Confidence 589999999 9999999999886 459999999999887665443 22 679999999999999999
Q ss_pred HHHHHhccC---cEEEEEcCCCCCChhhHHHHH---HHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHH
Q psy7267 173 TLGTKCARG---SIILFADADGATKFADLEKLE---DKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFR 246 (569)
Q Consensus 173 N~Gl~~A~g---d~Vv~lDaD~~~~pd~L~~lv---~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r 246 (569)
|.|++.|++ |||+++|+|+.++|++|++++ ..+.+. +... ++|........... ... .
T Consensus 65 N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~-------------~~~~-~~~~~~~~~~~~~~-~~~-~ 128 (237)
T cd02526 65 NIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKN-------------SNIG-AVGPRIIDRRTGEN-SPG-V 128 (237)
T ss_pred hHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccC-------------CCeE-EEeeeEEcCCCCee-ccc-e
Confidence 999999987 999999999999999999996 333332 2222 23333221111100 000 0
Q ss_pred HHhhhhhhhHhhhcc-cccccccccceeeEeHHHHHHHhccccCCch---hhchHHHHHHHHcCCCEEEEEEEEEEec
Q psy7267 247 NILMKGFHFIVWFTG-VRTIRDTQCGFKLFTRKSALQLFSSIHVQRW---AFDVELLFIAEVLHIPMAEVSVNWTEIE 320 (569)
Q Consensus 247 ~~~~~~~~~l~~~~~-~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~---~~D~EL~~Ra~~~G~rI~~vPv~~~~~~ 320 (569)
............... ........++..++||++++++ +.+++.+ .+|+|++.|+.+.|+++.++|.....+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~--ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 129 RKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKV--GGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred eccCccceecccccCCceEeeeeeccceEEcHHHHHHh--CCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 000000000000000 0111112234468999999999 5555554 4599999999999999999986544443
No 47
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.85 E-value=2.6e-19 Score=203.45 Aligned_cols=235 Identities=13% Similarity=0.062 Sum_probs=157.9
Q ss_pred CCCCccEEEEEeecCCCC-----ChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHH----HHHHhHhhC-CC
Q psy7267 86 DEPSVNLSVIVPAYNEQD-----RLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQV----VHQYTEKCG-ED 155 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~-----~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~ei----l~~~~~~~~-~~ 155 (569)
.+..|+|+|+||+|||+. .|+++++|+.++ +|+ +++||+|+||+++|++... .+++.++++ ..
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~------~~~-~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAAT------GHG-AHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc------CCC-CCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 345688999999999995 356666666554 554 3799999999999987543 345555553 25
Q ss_pred eEEEEEcCCCCC-hHHHHHHHHHh--ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeee
Q psy7267 156 IVRGLKLLKNRG-KGGAVTLGTKC--ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRA 232 (569)
Q Consensus 156 ~V~vi~~~~n~G-ka~AlN~Gl~~--A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~ 232 (569)
++.+.+..+|.| |++++|.+++. +++||++++|||..+++|++.+++..++.+ +++++|++...
T Consensus 193 ~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~d-------------P~vGlVQt~~~ 259 (691)
T PRK05454 193 RIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEAN-------------PRAGLIQTLPV 259 (691)
T ss_pred cEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhC-------------cCEEEEeCCcc
Confidence 788888777766 89999999998 567999999999999999999999999864 57788887554
Q ss_pred ecccccchhhHHHHHHhhhhhhhHhhhcc--cc-cccccccceeeEeHHHHHHHh--------ccccCCchhhchHHHHH
Q psy7267 233 HLEALANVQRSFFRNILMKGFHFIVWFTG--VR-TIRDTQCGFKLFTRKSALQLF--------SSIHVQRWAFDVELLFI 301 (569)
Q Consensus 233 ~~~~~~~~~~~~~r~~~~~~~~~l~~~~~--~~-~i~d~~~gf~lfrR~al~~I~--------~~~~~e~~~~D~EL~~R 301 (569)
..+.++...+.. .+.+..+..+..... .. +.....|...++||+++.++. +.+..+...+|+++..+
T Consensus 260 ~~n~~slfaR~q--qf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~ 337 (691)
T PRK05454 260 AVGADTLFARLQ--QFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAAL 337 (691)
T ss_pred CcCCCCHHHHHH--HHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHH
Confidence 444443322211 111111111100000 00 111122344689999999872 11223556789999999
Q ss_pred HHHcCCCEEEEEE---EEEEecCCccchhHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy7267 302 AEVLHIPMAEVSV---NWTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWKIKA 353 (569)
Q Consensus 302 a~~~G~rI~~vPv---~~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~~ 353 (569)
++++||++.++|. .|.+.+.+- ...++++.||..|.++...
T Consensus 338 l~~~GyrV~~~pd~~~~~ee~P~tl-----------~~~~~qr~RW~~G~lQ~l~ 381 (691)
T PRK05454 338 MRRAGWGVWLAPDLPGSYEELPPNL-----------LDELKRDRRWCQGNLQHLR 381 (691)
T ss_pred HHHCCCEEEEcCccccccccCCCCH-----------HHHHHHHHHHHhchHHHHH
Confidence 9999999999986 244433333 5666777777777766543
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=4.5e-20 Score=170.16 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=133.3
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+.+.+.++++++.++ .++ .+||+|+||||+|++.+.+++.. .+++++..++|.|++.|+|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~------~~~--~~~iiivdd~s~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQ------TYP--DFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhc------cCC--CeEEEEEECCCCchHHHHHHHhC-----CCeEEEecCCCcChHHHhh
Confidence 6899999999999999999887 332 78999999999999999887753 3588888889999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.+++|+++++|+|+.++|+++.++++.+.+. ++.+++.+.
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~----------------------- 111 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQD-------------PDVGIVGPK----------------------- 111 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhC-------------CCceEEEcc-----------------------
Confidence 99999999999999999999999999999988774 344454433
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCc---hhhchHHHHHHHHcCCCEEEEEEEEE
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQR---WAFDVELLFIAEVLHIPMAEVSVNWT 317 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~---~~~D~EL~~Ra~~~G~rI~~vPv~~~ 317 (569)
..+++.+++|++++++ +..++. +.+|.++..|+.+.|+++..+|....
T Consensus 112 --------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~ 162 (166)
T cd04186 112 --------------VSGAFLLVRREVFEEV--GGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVI 162 (166)
T ss_pred --------------CceeeEeeeHHHHHHc--CCCChhhhccccHHHHHHHHHHcCCeEEEccceEE
Confidence 3457789999999998 444433 45699999999999999999986543
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=2.5e-19 Score=174.54 Aligned_cols=178 Identities=21% Similarity=0.128 Sum_probs=124.2
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHH
Q psy7267 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGA 171 (569)
Q Consensus 92 VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~A 171 (569)
||||||+||+++.|.++|+++++| .|+ ++||+||||+|+|+|.+++++ .+++++. .+.|++.|
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q------~~~--~~evivvdd~s~d~~~~~~~~-------~~~~~~~--~~~g~~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRL------NPL--PLEIIVVDGGSTDGTVAIARS-------AGVVVIS--SPKGRARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhc------cCC--CcEEEEEeCCCCccHHHHHhc-------CCeEEEe--CCcCHHHH
Confidence 589999999999999999999887 332 789999999999999998876 3455554 46799999
Q ss_pred HHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhh
Q psy7267 172 VTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMK 251 (569)
Q Consensus 172 lN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~ 251 (569)
+|.|++.|++|+|+++|+|+.++|+++++++..+.+. +..++.... ........... ....
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~----~~~~ 124 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD--------------GAVAGAFRL-RFDDPGPRLRL----LELG 124 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC--------------CcEEEEEEe-eecCCccchhh----hhhc
Confidence 9999999999999999999999999999997766552 222222222 22222211110 0000
Q ss_pred hhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchhhchHHHHHHHHcCCCEEE
Q psy7267 252 GFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 252 ~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~~D~EL~~Ra~~~G~rI~~ 311 (569)
. ........ ........+++|++++++ +++....+.+|+|++.|+.+.|+++..
T Consensus 125 -~-~~~~~~~~---~~~~~~~~~~r~~~~~~~-G~fd~~~~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 125 -A-NLRSRLFG---LPYGDQGLFIRRELFEEL-GGFPELPLMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred -c-cceecccC---CCcCCceEEEEHHHHHHh-CCCCccccccHHHHHHHHHhCCCEEEc
Confidence 0 00000011 111223568999999998 233333356799999999999998765
No 50
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.83 E-value=1e-19 Score=175.74 Aligned_cols=162 Identities=19% Similarity=0.140 Sum_probs=111.9
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC---CCCChHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL---KNRGKGG 170 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~---~n~Gka~ 170 (569)
||||+|||++.|+++|+++.++ + | ++||+||||||+|+|.++++ +.... +++++++.. .|.||+.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~------~-~--~~eIivvdd~S~D~t~~~~~-~~~~~--~~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRN------K-P--NFLVLVIDDASDDDTAGIVR-LAITD--SRVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhC------C-C--CeEEEEEECCCCcCHHHHHh-heecC--CcEEEEeccCCcCCCCHHH
Confidence 6999999999999999999886 3 2 68999999999999999998 33333 578888753 5789999
Q ss_pred HHHHHHHhcc-----------CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc-c
Q psy7267 171 AVTLGTKCAR-----------GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL-A 238 (569)
Q Consensus 171 AlN~Gl~~A~-----------gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~-~ 238 (569)
|+|.|++.++ +|+|+++|+|+.++|++++++...+.+ ++++.+.+.....+.. .
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~--------------~~v~~v~~~~~~~~~~~~ 134 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSD--------------PRVAGTQSRVRMYNRHKN 134 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcC--------------CceEEEeeeEEEecCCCC
Confidence 9999999875 379999999999999999998887764 4556666554333322 2
Q ss_pred chhhHHHHHHhhhh-hhhHhhhcccccccccccceeeEeHHHHHHH
Q psy7267 239 NVQRSFFRNILMKG-FHFIVWFTGVRTIRDTQCGFKLFTRKSALQL 283 (569)
Q Consensus 239 ~~~~~~~r~~~~~~-~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I 283 (569)
+..+...-.+.... .....+...+ . ....+...+|||++++++
T Consensus 135 ~~~~~~~~e~~~~~~~~~~~~~~~~-~-~~~~G~~~~~r~~~l~~v 178 (191)
T cd06436 135 LLTILQDLEFFIIIAATQSLRALTG-T-VGLGGNGQFMRLSALDGL 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-c-EEECCeeEEEeHHHHHHh
Confidence 21111111111110 0111111112 1 123445579999999999
No 51
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.82 E-value=2.4e-19 Score=183.01 Aligned_cols=191 Identities=18% Similarity=0.151 Sum_probs=124.8
Q ss_pred eecCCC-CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHH
Q psy7267 97 PAYNEQ-DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLG 175 (569)
Q Consensus 97 P~yNE~-~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~G 175 (569)
.+||.+ +.|.++|+++++| ..|||||||||+|+ +.++++.+++ ++++++++++|.|.+.|+|.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q-----------~~~iiVVDN~S~~~--~~~~~~~~~~--~~i~~i~~~~N~G~a~a~N~G 65 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQ-----------VDRIIAVDNSPHSD--QPLKNARLRG--QKIALIHLGDNQGIAGAQNQG 65 (281)
T ss_pred CccCccHHHHHHHHHHHHhc-----------CCEEEEEECcCCCc--HhHHHHhccC--CCeEEEECCCCcchHHHHHHH
Confidence 379974 7888999988886 45999999999765 2223333334 689999999999999999999
Q ss_pred HHhc---cCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhH-HHHHHhhh
Q psy7267 176 TKCA---RGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRS-FFRNILMK 251 (569)
Q Consensus 176 l~~A---~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~-~~r~~~~~ 251 (569)
++.| .+|||+++|+|+.+++++++++++.+++.+ .. ..++|.+.....+...... ........
T Consensus 66 i~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (281)
T TIGR01556 66 LDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN------------GQ-ACALGPRFFDRGTSRRLPAIHLDGLLLR 132 (281)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC------------Cc-eEEECCeEEcCCCcccCCceeeccccee
Confidence 9998 689999999999999999999999987631 12 2333333211111000000 00000000
Q ss_pred hhhhHhhhcccccc-cccccceeeEeHHHHHHHhccccCCch---hhchHHHHHHHHcCCCEEEEEEEEEEe
Q psy7267 252 GFHFIVWFTGVRTI-RDTQCGFKLFTRKSALQLFSSIHVQRW---AFDVELLFIAEVLHIPMAEVSVNWTEI 319 (569)
Q Consensus 252 ~~~~l~~~~~~~~i-~d~~~gf~lfrR~al~~I~~~~~~e~~---~~D~EL~~Ra~~~G~rI~~vPv~~~~~ 319 (569)
... .......... ...++| .+++|++++++ +.+++++ .+|+|+++|+.++|+++.++|.....|
T Consensus 133 ~~~-~~~~~~~~~~~~~~~sg-~li~~~~~~~i--G~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 133 QIS-LDGLTTPQKTSFLISSG-CLITREVYQRL--GMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eec-ccccCCceeccEEEcCc-ceeeHHHHHHh--CCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 000 0000000011 112233 48999999999 6666654 349999999999999999999544433
No 52
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.81 E-value=1.9e-18 Score=195.51 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=156.6
Q ss_pred CCCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC
Q psy7267 86 DEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN 165 (569)
Q Consensus 86 ~~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n 165 (569)
....|.+||+||+|||+++|+++++++++.+ +|| ++||+|+.+..+++|.+.++++...+ ++++++..+++
T Consensus 67 ~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~l-----dYp--~~~I~v~~~~nD~~T~~~~~~~~~~~--p~~~~v~~~~~ 137 (703)
T PRK15489 67 ERDEQPLAIMVPAWKEYDVIAKMIENMLATL-----DYR--RYVIFVGTYPNDAETITEVERMRRRY--KRLVRVEVPHD 137 (703)
T ss_pred ccCCCceEEEEeCCCcHHHHHHHHHHHHhcC-----CCC--CeEEEEEecCCCccHHHHHHHHhccC--CcEEEEEcCCC
Confidence 4456789999999999999999999987431 788 68999965444558888888888777 57777766554
Q ss_pred --CChHHHHHHHHHhc-------cCc--EEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeee-
Q psy7267 166 --RGKGGAVTLGTKCA-------RGS--IILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAH- 233 (569)
Q Consensus 166 --~Gka~AlN~Gl~~A-------~gd--~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~- 233 (569)
.||+.|+|.|++.+ .++ .|++.|||+.++|+.|..+ +.+... .+++++....
T Consensus 138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~---------------~~~iQ~pV~~~ 201 (703)
T PRK15489 138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPR---------------KDLVQLPVLSL 201 (703)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCC---------------cceeeeeeccC
Confidence 78999999999986 333 4999999999999999876 444331 2566653221
Q ss_pred -cccccchhhHHHHHHhhhhhh-hHhhhcccccccccccceeeEeHHHHHHHhc-----cccCCchhhchHHHHHHHHcC
Q psy7267 234 -LEALANVQRSFFRNILMKGFH-FIVWFTGVRTIRDTQCGFKLFTRKSALQLFS-----SIHVQRWAFDVELLFIAEVLH 306 (569)
Q Consensus 234 -~~~~~~~~~~~~r~~~~~~~~-~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~-----~~~~e~~~~D~EL~~Ra~~~G 306 (569)
.+.+++..+.+.-.+...+.. ...+...+..+. .+|...+|||++++++.. .+..+..+||+|+.+|+.+.|
T Consensus 202 ~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ip-l~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G 280 (703)
T PRK15489 202 ERKWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVP-SAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELG 280 (703)
T ss_pred CCccccHHHHHHHHHHHHHhhhHHHHHHHcCCcee-ccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCC
Confidence 223344444333333332221 112212222332 233345899999998721 234467789999999999999
Q ss_pred CCEEEE--EEEEEEec------------CCccchhHHHHHHHHHHHHHHHHhcchhh
Q psy7267 307 IPMAEV--SVNWTEIE------------GSKIVPVFSWIQMGWDVLNIWLHYTLGLW 349 (569)
Q Consensus 307 ~rI~~v--Pv~~~~~~------------GS~~~~~~~~~~~~~~~l~~r~ry~~g~w 349 (569)
++..+. |+.+..+. +..+.........++...+|+.||..|+.
T Consensus 281 ~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~Gi~ 337 (703)
T PRK15489 281 MQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVLGIA 337 (703)
T ss_pred CceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHhHHH
Confidence 998884 55432211 11222233445666778888888887753
No 53
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.81 E-value=9.1e-20 Score=166.99 Aligned_cols=168 Identities=24% Similarity=0.280 Sum_probs=119.0
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
||||+||+++.|.++|+++++| .++ ++||+||||+|+|+|.+.++++....+ ..+.++...+|.|++.|+|
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q------~~~--~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLAL------DYP--KLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALN 71 (180)
T ss_pred CeecccChHHHHHHHHHHHHhC------CCC--ceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHH
Confidence 6899999999999999999987 332 789999999999999999998766542 3466777789999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc-cchhhHHHHHHhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL-ANVQRSFFRNILMKG 252 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~-~~~~~~~~r~~~~~~ 252 (569)
.|++.+++|+++++|+|+.++|+++++++..+... ++.+++.|........ ...............
T Consensus 72 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (180)
T cd06423 72 AGLRHAKGDIVVVLDADTILEPDALKRLVVPFFAD-------------PKVGAVQGRVRVRNGSENLLTRLQAIEYLSIF 138 (180)
T ss_pred HHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccC-------------CCeeeEeeeEEEecCcCcceeccchheeccee
Confidence 99999999999999999999999999997776654 4566777666543332 111110000000000
Q ss_pred hhhHhhhcccccccccccceeeEeHHHHHHH
Q psy7267 253 FHFIVWFTGVRTIRDTQCGFKLFTRKSALQL 283 (569)
Q Consensus 253 ~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I 283 (569)
.................+++.++||++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 169 (180)
T cd06423 139 RLGRRAQSALGGVLVLSGAFGAFRREALREV 169 (180)
T ss_pred eeeeehhheecceeecCchHHHHHHHHHHHh
Confidence 0000000011122344556789999999998
No 54
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.80 E-value=7e-19 Score=182.66 Aligned_cols=212 Identities=17% Similarity=0.089 Sum_probs=145.2
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCCh
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGK 168 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gk 168 (569)
+|++++||++||..+.+.+||+++.++ .|+ ..+|++|||+|+|+|.+.+++.. + ++++++.+++|.|.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~------~~~--~~~iv~vDn~s~d~~~~~~~~~~--~--~~v~~i~~~~NlG~ 69 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQ------TYP--DDVIVVVDNGSTDGSLEALKARF--F--PNVRLIENGENLGF 69 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcC------CCC--CcEEEEccCCCCCCCHHHHHhhc--C--CcEEEEEcCCCccc
Confidence 477999999999999999999999987 444 44666899999999999988742 3 78999999999999
Q ss_pred HHHHHHHHHhccCc---EEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHH
Q psy7267 169 GGAVTLGTKCARGS---IILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFF 245 (569)
Q Consensus 169 a~AlN~Gl~~A~gd---~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~ 245 (569)
+++.|.|++.|.++ |++++|.|..++|++|+++++.+++.+...++|......++..-.-...... .. ...
T Consensus 70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~----~~~ 143 (305)
T COG1216 70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGES--DG----LTG 143 (305)
T ss_pred hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheecccc--cc----ccc
Confidence 99999999999654 9999999999999999999999999644333333211111000000000000 00 000
Q ss_pred HHHhhhhhhhHhhhccccccc-ccccceeeEeHHHHHHHhccccCCchh---hchHHHHHHHHcCCCEEEEEEEEEEec
Q psy7267 246 RNILMKGFHFIVWFTGVRTIR-DTQCGFKLFTRKSALQLFSSIHVQRWA---FDVELLFIAEVLHIPMAEVSVNWTEIE 320 (569)
Q Consensus 246 r~~~~~~~~~l~~~~~~~~i~-d~~~gf~lfrR~al~~I~~~~~~e~~~---~D~EL~~Ra~~~G~rI~~vPv~~~~~~ 320 (569)
..................... ...+++.+++|++++++ +..+++++ +|+|++.|++++|+++..+|.....|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~v--G~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~ 220 (305)
T COG1216 144 GWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKV--GGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHK 220 (305)
T ss_pred cceecccccccccccchhhhhhhcceeeeEEcHHHHHHh--CCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEe
Confidence 000000000000000001111 24567789999999999 66666654 499999999999999999996554443
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.77 E-value=2e-17 Score=170.03 Aligned_cols=202 Identities=22% Similarity=0.288 Sum_probs=134.0
Q ss_pred EEEEeecCCCCC--hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC---CC
Q psy7267 93 SVIVPAYNEQDR--LKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN---RG 167 (569)
Q Consensus 93 SVIIP~yNE~~~--I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n---~G 167 (569)
|||||++|+... |.+.|.+++..+.... +..++|||||||||++.+.+.++++.++. ...+++....+ .|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~---~~~~~eiIvvd~~s~~~~~~~l~~~~~~~--~~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQ---SDPDFEIIVVDDGSSDEFDEELKKLCEKN--GFIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcC---CCCCEEEEEEECCCchhHHHHHHHHHhcc--CceEEEEcCCCCCCcC
Confidence 799999999965 5566666666655421 23489999999999999888888877765 33435555543 59
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHH---HHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHH
Q psy7267 168 KGGAVTLGTKCARGSIILFADADGATKFADLEKLED---KLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSF 244 (569)
Q Consensus 168 ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~---~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~ 244 (569)
++.|+|.|++.|++|+|+++|+|+.++|+.++++++ .+... +..-++..... ..+.... ..
T Consensus 76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~-------------~~~~~~~p~~y-l~~~~~~--~~ 139 (281)
T PF10111_consen 76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKN-------------PNAFLVYPCLY-LSEEGSE--KF 139 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcC-------------CCceEEEeeee-ccchhhH--HH
Confidence 999999999999999999999999999999999999 55543 11122222222 2221111 11
Q ss_pred HHHH-hhhhhhhHhhhcc----cccccccccceeeEeHHHHHHHhccccCCch----hhchHHHHHHHHcCCCEEEEEEE
Q psy7267 245 FRNI-LMKGFHFIVWFTG----VRTIRDTQCGFKLFTRKSALQLFSSIHVQRW----AFDVELLFIAEVLHIPMAEVSVN 315 (569)
Q Consensus 245 ~r~~-~~~~~~~l~~~~~----~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~----~~D~EL~~Ra~~~G~rI~~vPv~ 315 (569)
.... ............. ........+++.+++|+.+.++ +.++|.| .+|.|++.|+.+.|..+...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~i--GGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~ 217 (281)
T PF10111_consen 140 YSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEI--GGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDY 217 (281)
T ss_pred hhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHh--CCCCccccCCCcchHHHHHHHHHcCCcEecChHH
Confidence 1100 0000000101111 1111223347789999999999 6666665 46999999999999999888754
Q ss_pred EE
Q psy7267 316 WT 317 (569)
Q Consensus 316 ~~ 317 (569)
..
T Consensus 218 ~~ 219 (281)
T PF10111_consen 218 LV 219 (281)
T ss_pred hc
Confidence 44
No 56
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.6e-16 Score=145.50 Aligned_cols=106 Identities=36% Similarity=0.471 Sum_probs=93.5
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCCh
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGK 168 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gk 168 (569)
.|++|||||+||+++.|.++|+|+++|... ++|||||||||+|+|.++++++.++. .++......+|.|+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~--------~~eiivvddgs~d~t~~~~~~~~~~~--~~~~~~~~~~~~g~ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYK--------DFEIIVVDDGSTDGTTEIAIEYGAKD--VRVIRLINERNGGL 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhc--------ceEEEEEeCCCCCChHHHHHHHhhhc--ceEEEeecccCCCh
Confidence 477999999999999999999999998443 47999999999999999999987764 45666777889999
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHH
Q psy7267 169 GGAVTLGTKCARGSIILFADADGATKFADLEKLEDKL 205 (569)
Q Consensus 169 a~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~ 205 (569)
+.|+|.|+..+.+|+++++|+|+. .++.+..+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999999999999999999999 998888844444
No 57
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.68 E-value=3.7e-16 Score=155.25 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=89.9
Q ss_pred cEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHH
Q psy7267 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGG 170 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~ 170 (569)
+|||+||+|||++.|++||+|+..+ ..|||||||||+|+|.+++++ .+++++.. ++.|.+.
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~-----------~~eiivvD~gStD~t~~i~~~-------~~~~v~~~-~~~g~~~ 61 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA-----------VDEIIVVDSGSTDRTVEIAKE-------YGAKVYQR-WWDGFGA 61 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc-----------cCEEEEEeCCCCccHHHHHHH-------cCCEEEEC-CCCChHH
Confidence 3899999999999999999999765 349999999999999999985 35677776 8999999
Q ss_pred HHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 171 AVTLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 171 AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
|+|.|++.|++|||+++|+|..++|+.++++.+.+++.
T Consensus 62 ~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 62 QRNFALELATNDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred HHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999874
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.59 E-value=3.6e-14 Score=126.71 Aligned_cols=151 Identities=31% Similarity=0.339 Sum_probs=120.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
|+||++|+.+.+.++++++.++ .+ ...||+++||+++|.+.+.++++.+.. ..+..+....+.|++.++|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~------~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 70 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQ------TY--PNFEVIVVDDGSTDGTLEILEEYAKKD--PRVIRVINEENQGLAAARN 70 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhC------Cc--cceEEEEEeCCCCccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHH
Confidence 6899999999999999999886 33 278999999999999999998876542 3456666788999999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGF 253 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~ 253 (569)
.|++.+++|+++++|+|..++|+++..++..+... ++.+++.+.
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~----------------------- 114 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLAD-------------PEADAVGGP----------------------- 114 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcC-------------CCceEEecc-----------------------
Confidence 99999999999999999999999999986655543 455666654
Q ss_pred hhHhhhcccccccccccceeeEeHHHHHHHhccccCCc---hhhchHHHHHHHHcCCCE
Q psy7267 254 HFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQR---WAFDVELLFIAEVLHIPM 309 (569)
Q Consensus 254 ~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~---~~~D~EL~~Ra~~~G~rI 309 (569)
+..++++++++++ +...+. +.+|.++..++...|.++
T Consensus 115 -----------------~~~~~~~~~~~~~--~~~~~~~~~~~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 115 -----------------GNLLFRRELLEEI--GGFDEALLSGEEDDDFLLRLLRGGKVA 154 (156)
T ss_pred -----------------chheeeHHHHHHh--CCcchHhcCCcchHHHHHHHHhhcccc
Confidence 4569999999998 332222 246888888888877654
No 59
>KOG3736|consensus
Probab=99.24 E-value=5.7e-12 Score=139.29 Aligned_cols=206 Identities=20% Similarity=0.107 Sum_probs=141.2
Q ss_pred CCCccEEEEEeecCCCCC-hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccH-HHHHHHHhHhhCCCeEEEEEcCC
Q psy7267 87 EPSVNLSVIVPAYNEQDR-LKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKT-MQVVHQYTEKCGEDIVRGLKLLK 164 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~-I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T-~eil~~~~~~~~~~~V~vi~~~~ 164 (569)
...|..||||+.+||+.. +-+++.|+++..-. ..--|||+|||+|+..- .+.++++.+.+ ..+++++.++
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~------~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~--~~v~i~r~~~ 210 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPP------YLLKEIILVDDFSDRDHLKDKLEEYVKRF--SKVRILRTKK 210 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCCh------hHeEEEEEeecCcchhhhhhhhHHHHhhh--cceeEEeecc
Confidence 457889999999999965 55555565554221 22359999999997654 66688888887 4599999999
Q ss_pred CCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhH-
Q psy7267 165 NRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRS- 243 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~- 243 (569)
+.|.-.|+..|.+.|+||+++|+|+-+.....|++.+++.+..... .+|+..-..++.+++....
T Consensus 211 R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~--------------tvv~PvID~Id~~tf~y~~~ 276 (578)
T KOG3736|consen 211 REGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRK--------------TVVCPVIDVIDDNTFEYEKQ 276 (578)
T ss_pred hhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCc--------------eeecceEEeecCcCceeccc
Confidence 9999999999999999999999999999999999999999987532 2333222222222211111
Q ss_pred --HHHHHhhhhh---------hhHhhhcc-cccc--cccccceeeEeHHHHHHHhccccCCch---h-hchHHHHHHHHc
Q psy7267 244 --FFRNILMKGF---------HFIVWFTG-VRTI--RDTQCGFKLFTRKSALQLFSSIHVQRW---A-FDVELLFIAEVL 305 (569)
Q Consensus 244 --~~r~~~~~~~---------~~l~~~~~-~~~i--~d~~~gf~lfrR~al~~I~~~~~~e~~---~-~D~EL~~Ra~~~ 305 (569)
..+.-+.+.+ ....+... ..++ ....||.++++|+.+.++ +..+++. + +.+||++|+...
T Consensus 277 ~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~ei--G~yD~gMdiwGGENlElSfrvWqC 354 (578)
T KOG3736|consen 277 SELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGEL--GSYDEGMDIWGGENLELSFRVWQC 354 (578)
T ss_pred CccceeeeecceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhc--cCccccccccChhhceeeEEEecc
Confidence 0000000000 01111101 1122 234467889999999999 5554443 2 599999999999
Q ss_pred CCCEEEEEEEE
Q psy7267 306 HIPMAEVSVNW 316 (569)
Q Consensus 306 G~rI~~vPv~~ 316 (569)
|.++..+|.+.
T Consensus 355 GG~lei~PCSr 365 (578)
T KOG3736|consen 355 GGRLEIVPCSR 365 (578)
T ss_pred CCeEEecCccc
Confidence 99999999543
No 60
>KOG3737|consensus
Probab=99.24 E-value=9.1e-12 Score=129.12 Aligned_cols=212 Identities=17% Similarity=0.111 Sum_probs=141.0
Q ss_pred CCCccEEEEEeecCCCCC-hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCcc-HHHHHHHHhHhhCCCeEEEEEcCC
Q psy7267 87 EPSVNLSVIVPAYNEQDR-LKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDK-TMQVVHQYTEKCGEDIVRGLKLLK 164 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~-I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~-T~eil~~~~~~~~~~~V~vi~~~~ 164 (569)
...|..||||..+||.-. |-+++.|++...- +.--.||++|||-|+.+ ..+.+.++...+. ..|+|+++++
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP------~~~l~eivlvDDfSdKehLkekLDeYv~~fn-GlVkV~Rne~ 224 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSP------RKYLAEIVLVDDFSDKEHLKEKLDEYVKLFN-GLVKVFRNER 224 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCc------HHhhheEEEeccCCccHHHHHHHHHHHHHhc-CEEEEEecch
Confidence 457889999999999954 6667777765311 11245999999999754 6788888888874 6789999999
Q ss_pred CCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccc-ccchhhH
Q psy7267 165 NRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEA-LANVQRS 243 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~-~~~~~~~ 243 (569)
+.|.-.|+..|.++|.|++++|+||.+.+.-+|++.|++.+..+...-.+ +-.|.+-+....... .+.. ..
T Consensus 225 REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTV-------P~IDgId~n~~EyrpvyG~d-n~ 296 (603)
T KOG3737|consen 225 REGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTV-------PLIDGIDGNTYEYRPVYGGD-ND 296 (603)
T ss_pred hhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEE-------eeeeeecCCceEEeeccCCc-ch
Confidence 99999999999999999999999999999999999999999874211111 011111111111100 0000 00
Q ss_pred HHHHHhhhhhh----hHhh------hcccc--cccccccceeeEeHHHHHHHhccccCCch----hhchHHHHHHHHcCC
Q psy7267 244 FFRNILMKGFH----FIVW------FTGVR--TIRDTQCGFKLFTRKSALQLFSSIHVQRW----AFDVELLFIAEVLHI 307 (569)
Q Consensus 244 ~~r~~~~~~~~----~l~~------~~~~~--~i~d~~~gf~lfrR~al~~I~~~~~~e~~----~~D~EL~~Ra~~~G~ 307 (569)
..+.+..+++- .+.. ..... +.....+|.+++.|+.+.++ +..+++. .+..||++++.+.|.
T Consensus 297 h~rGifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~EL--G~YDpgLqiWGGEnfElSfKIWQCGG 374 (603)
T KOG3737|consen 297 HARGIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFEL--GLYDPGLQIWGGENFELSFKIWQCGG 374 (603)
T ss_pred hhcchhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHh--ccCCCcceeecCcceeEEEEEEeeCC
Confidence 12222111110 0000 00011 12233467889999999999 6555544 358899999999999
Q ss_pred CEEEEEEE
Q psy7267 308 PMAEVSVN 315 (569)
Q Consensus 308 rI~~vPv~ 315 (569)
+|.++|.+
T Consensus 375 ~i~fVPCS 382 (603)
T KOG3737|consen 375 KILFVPCS 382 (603)
T ss_pred EEEEEEcc
Confidence 99999964
No 61
>KOG3738|consensus
Probab=99.22 E-value=1.6e-11 Score=127.69 Aligned_cols=212 Identities=18% Similarity=0.055 Sum_probs=134.8
Q ss_pred CCccEEEEEeecCCCCC-hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDR-LKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR 166 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~-I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~ 166 (569)
.+|.-||||..+||+.. |-+++.|+++..-+ ..-.|||+|||+|.|.+ ..+.+. +. ++++++++.++.
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP~------~li~EiILVDD~S~Dpe--d~~~L~-ri--~kvr~LRN~~Re 190 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSPE------HLIHEIILVDDFSQDPE--DGKLLK-RI--PKVRVLRNNERE 190 (559)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHcCChH------HhhheeEEecCCCCChH--HHHHHh-hh--heeeeecccchh
Confidence 46788999999999964 66667777664222 11359999999999864 233332 22 789999999999
Q ss_pred ChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCC-CCceEEEeeeeecccccchhhHHH
Q psy7267 167 GKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAA-GCNGVIVGSRAHLEALANVQRSFF 245 (569)
Q Consensus 167 Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~-~g~dvV~G~r~~~~~~~~~~~~~~ 245 (569)
|.-..++.|...|++.++.|+|+.+.+..+||+.|++.++++....+.+...... +....+.++... .++ ..+++.
T Consensus 191 GLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadL--rGG-FDWsLh 267 (559)
T KOG3738|consen 191 GLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADL--RGG-FDWSLH 267 (559)
T ss_pred hhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhh--cCC-cceEEE
Confidence 9999999999999999999999999999999999999998764333322111100 011111111110 011 011110
Q ss_pred HHHh-hhhhhhHhhh--cccccccccccceeeEeHHHHHHHhccccC---Cchh-hchHHHHHHHHcCCCEEEEEEE
Q psy7267 246 RNIL-MKGFHFIVWF--TGVRTIRDTQCGFKLFTRKSALQLFSSIHV---QRWA-FDVELLFIAEVLHIPMAEVSVN 315 (569)
Q Consensus 246 r~~~-~~~~~~l~~~--~~~~~i~d~~~gf~lfrR~al~~I~~~~~~---e~~~-~D~EL~~Ra~~~G~rI~~vPv~ 315 (569)
-++. +.......+. .....-....||.+++.|+.++++ +..+ +-|+ +.+||++|....|..+..+|.+
T Consensus 268 F~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~L--Gkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCS 342 (559)
T KOG3738|consen 268 FKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNEL--GKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCS 342 (559)
T ss_pred EEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHh--cccCccccccCCcceEEEEEEEeeCCeeEEEecc
Confidence 0000 0000111110 111122335578899999999998 3322 3343 5889999999999999999854
No 62
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.11 E-value=1.5e-09 Score=104.45 Aligned_cols=143 Identities=15% Similarity=-0.000 Sum_probs=102.9
Q ss_pred EEEEcCCCCC---hHHHHHHHHHh-ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeee
Q psy7267 158 RGLKLLKNRG---KGGAVTLGTKC-ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAH 233 (569)
Q Consensus 158 ~vi~~~~n~G---ka~AlN~Gl~~-A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~ 233 (569)
+++..++..| |..++..|+++ +++|+++++|+|..++|++|..++..+++ +++++|.+....
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~--------------p~vglVt~~~~~ 70 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD--------------PGVGLVTGLPRG 70 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC--------------CCCcEEEecccc
Confidence 3555455544 99999999998 99999999999999999999999999987 577899887765
Q ss_pred cccccchhhHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhcccc---CCchhhchHHHHHHHHcCCCEE
Q psy7267 234 LEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIH---VQRWAFDVELLFIAEVLHIPMA 310 (569)
Q Consensus 234 ~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~---~e~~~~D~EL~~Ra~~~G~rI~ 310 (569)
...+++...-. ..+.......+.. ..+.....|++.++||++++++ +.. .+.+.+|+.|..++.+.|+++.
T Consensus 71 ~~~~~~~~~l~-~~~~~~~~~~~~a---~~~~~~~~G~~m~~rr~~L~~~--GG~~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 71 VPARGFWSRLE-AAFFNFLPGVLQA---LGGAPFAWGGSMAFRREALEEI--GGFEALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred cCCcCHHHHHH-HHHHhHHHHHHHH---hcCCCceecceeeeEHHHHHHc--ccHHHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 55444333221 1111222222222 1244456678889999999998 332 2467789999999999999999
Q ss_pred EEEEEEEEec
Q psy7267 311 EVSVNWTEIE 320 (569)
Q Consensus 311 ~vPv~~~~~~ 320 (569)
..|.......
T Consensus 145 ~~~~~v~~~~ 154 (175)
T PF13506_consen 145 LSPYPVVQTS 154 (175)
T ss_pred Ecchheeecc
Confidence 9986544433
No 63
>KOG2547|consensus
Probab=99.05 E-value=9.3e-10 Score=114.18 Aligned_cols=200 Identities=12% Similarity=-0.001 Sum_probs=143.3
Q ss_pred CCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCC
Q psy7267 87 EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR 166 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~ 166 (569)
+..|.||||.|...-++++-+.+|+.... +|+ ++|++.+-+.++|...++++++.++||+-..+++...+..
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesffts------~Y~--~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~v 153 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFTS------QYH--KYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKV 153 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHhh------ccC--ceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEccccc
Confidence 36789999999999999998888888877 788 8999999999999999999999999976667777767766
Q ss_pred C---hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhH
Q psy7267 167 G---KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRS 243 (569)
Q Consensus 167 G---ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~ 243 (569)
| |-.++--|.+.|+.|+|++.|+|..+.||.+-.|...+.++ +.-..|.+.+.-.+.++....-
T Consensus 154 g~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~sh-------------ekmalvtq~py~~dr~Gf~atl 220 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSH-------------EKMALVTQTPYCKDRQGFDATL 220 (431)
T ss_pred ccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcc-------------cceeeecCCceeeccccchhhh
Confidence 6 77778889999999999999999999999999999999986 4556777766655544422111
Q ss_pred HHHHHhhhhhhhHhhhcccccccc---cccceeeEeHHHHHHHhccccC--CchhhchHHHHHHHHcCCCEEEE
Q psy7267 244 FFRNILMKGFHFIVWFTGVRTIRD---TQCGFKLFTRKSALQLFSSIHV--QRWAFDVELLFIAEVLHIPMAEV 312 (569)
Q Consensus 244 ~~r~~~~~~~~~l~~~~~~~~i~d---~~~gf~lfrR~al~~I~~~~~~--e~~~~D~EL~~Ra~~~G~rI~~v 312 (569)
....+... -.+.....+..+ .++-..++||+++++. ++..+ ....+|+=+.......|++-...
T Consensus 221 e~~~fgTs----h~r~yl~~n~~~~~c~tgms~~mrK~~ld~~-ggi~~f~~yLaedyFaaksllSRG~ksais 289 (431)
T KOG2547|consen 221 EQVYFGTS----HPRIYLSGNVLGFNCSTGMSSMMRKEALDEC-GGISAFGGYLAEDYFAAKSLLSRGWKSAIS 289 (431)
T ss_pred hheeeccC----CceEEEccccccccccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 11111110 011111112222 2222358899999997 33322 23345777777777778775444
No 64
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=98.90 E-value=1.4e-08 Score=97.42 Aligned_cols=140 Identities=16% Similarity=0.052 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHH-HHHHhhhhhhhHhhhcc
Q psy7267 183 IILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSF-FRNILMKGFHFIVWFTG 261 (569)
Q Consensus 183 ~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~-~r~~~~~~~~~l~~~~~ 261 (569)
||+++|+|+.++||.++++++.+++ ++++++.+.....+.++...+.. .................
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~--------------~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALED--------------PKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSL 66 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhC--------------CCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhc
Confidence 6899999999999999999999984 56788877665432222111111 11000000001111111
Q ss_pred cccccccccceeeEeHHHHHHHhcccc-CCchhhchHHHHHHHHcCCCEEEEEEEEEEec-CCccchhHHHHHHHHHHHH
Q psy7267 262 VRTIRDTQCGFKLFTRKSALQLFSSIH-VQRWAFDVELLFIAEVLHIPMAEVSVNWTEIE-GSKIVPVFSWIQMGWDVLN 339 (569)
Q Consensus 262 ~~~i~d~~~gf~lfrR~al~~I~~~~~-~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~-GS~~~~~~~~~~~~~~~l~ 339 (569)
+ ......|+..++|+++++++ +++. .....||.|++.|+.++|+++.++|....+.. .+. .+..++
T Consensus 67 ~-~~~~~~G~~~~~r~~~l~~v-g~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t----------~~~~~~ 134 (193)
T PF13632_consen 67 G-RPLFLSGSGMLFRREALREV-GGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPT----------FRAFIR 134 (193)
T ss_pred C-CCccccCcceeeeHHHHHHh-CcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCC----------HHHHHH
Confidence 2 12223456679999999999 2233 35566899999999999999999997532222 222 256667
Q ss_pred HHHHhcchh
Q psy7267 340 IWLHYTLGL 348 (569)
Q Consensus 340 ~r~ry~~g~ 348 (569)
||.||..|.
T Consensus 135 Qr~RW~~g~ 143 (193)
T PF13632_consen 135 QRRRWARGA 143 (193)
T ss_pred HHHHHHhhh
Confidence 777777773
No 65
>PLN02893 Cellulose synthase-like protein
Probab=98.89 E-value=1.4e-07 Score=107.16 Aligned_cols=162 Identities=13% Similarity=0.027 Sum_probs=92.1
Q ss_pred hHHHHHHHHHh----ccCcEEEEEcCCCCC-ChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeee--cccccch
Q psy7267 168 KGGAVTLGTKC----ARGSIILFADADGAT-KFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAH--LEALANV 240 (569)
Q Consensus 168 ka~AlN~Gl~~----A~gd~Vv~lDaD~~~-~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~--~~~~~~~ 240 (569)
||+|+|.+++. ++|++|+.+|+|... +|+.+++.+-.|.+.. ..++...|+-...- .+.+..
T Consensus 282 KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~----------~~~~vafVQfPQ~F~~i~~~D~- 350 (734)
T PLN02893 282 KAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPS----------MDPKLGYVQFPQIFHGINKNDI- 350 (734)
T ss_pred ccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCC----------cCCceEEEeCcccccCCCcCCC-
Confidence 99999999996 689999999999985 6899999999887631 01244555532211 111110
Q ss_pred hhHHHHHHhhhhhhhHhhhcccc-cccccccceeeEeHHHHH---------HH---------------------------
Q psy7267 241 QRSFFRNILMKGFHFIVWFTGVR-TIRDTQCGFKLFTRKSAL---------QL--------------------------- 283 (569)
Q Consensus 241 ~~~~~r~~~~~~~~~l~~~~~~~-~i~d~~~gf~lfrR~al~---------~I--------------------------- 283 (569)
.....+. ++......+.+. +....+ ..+++||+++- ++
T Consensus 351 y~~~~~v----ff~~~~~glDG~~gp~y~G-TGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~s 425 (734)
T PLN02893 351 YAGELKR----LFQINMIGMDGLAGPNYVG-TGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHHVAG 425 (734)
T ss_pred CcchhHH----HHHHHhhcccccCCceeec-cceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhhhccc
Confidence 0000111 111111111111 111122 23488999982 11
Q ss_pred --hc---------cccCCchhhchHHHHHHHHcCCCEEEEEEEEEEecCCccchhHHHHHHHHHHHHHHHHhcchhhHHH
Q psy7267 284 --FS---------SIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWKIK 352 (569)
Q Consensus 284 --~~---------~~~~e~~~~D~EL~~Ra~~~G~rI~~vPv~~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~i~ 352 (569)
++ ++..+...||+...++++.+||+..++.-.-....|..-. .....+.|+.||..|..++.
T Consensus 426 C~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~-------~l~~~l~Q~~RWa~G~lqI~ 498 (734)
T PLN02893 426 CNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPI-------NLHDVLNQQKRWSVGLLEVA 498 (734)
T ss_pred cccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCC-------CHHHHHHHHHHHHhhhHHHH
Confidence 00 1111223779999999999999998874211111231111 12567889999999987765
No 66
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.74 E-value=5.6e-08 Score=102.34 Aligned_cols=106 Identities=24% Similarity=0.239 Sum_probs=81.7
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC----CCC
Q psy7267 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK----NRG 167 (569)
Q Consensus 92 VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~----n~G 167 (569)
+.|+|++||..+.+.++|++++++- ....+.+|+|.+||+++++.+.++.+. ..++++.+.. |.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~------p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYR------PSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhcc------ccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccC
Confidence 5799999999999999999999862 122367999999999998888887763 2455665432 211
Q ss_pred ----------hHH----HHHHHHHhccCcEEEEEcCCCCCChhhH---HHHHHHHHhc
Q psy7267 168 ----------KGG----AVTLGTKCARGSIILFADADGATKFADL---EKLEDKLKEL 208 (569)
Q Consensus 168 ----------ka~----AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L---~~lv~~~~~~ 208 (569)
.+. |+|.++..++++.++++|.|+.+.|+++ +++++.++++
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D 128 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEED 128 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcC
Confidence 233 9999999889999999999999999965 5566666653
No 67
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=2.3e-06 Score=92.66 Aligned_cols=210 Identities=16% Similarity=0.132 Sum_probs=119.4
Q ss_pred ccEEEEEeecCCCCC-hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHH-----HhHhh-CCCeEEEEEc
Q psy7267 90 VNLSVIVPAYNEQDR-LKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQ-----YTEKC-GEDIVRGLKL 162 (569)
Q Consensus 90 p~VSVIIP~yNE~~~-I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~-----~~~~~-~~~~V~vi~~ 162 (569)
.+-.|++|+|||+.. +-.-|+.+-+++.+. -....+++.|+.| |+|.-...+|+ +.++. ++.+|-+-+.
T Consensus 144 hrTAilmPiynEd~~rVfAgLrA~~eSla~T---g~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYRrR 219 (736)
T COG2943 144 HRTAILMPIYNEDVNRVFAGLRATYESLAAT---GHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYRRR 219 (736)
T ss_pred cceeEEeeccccCHHHHHHHHHHHHHHHHhh---CCcccceEEEEcC-CCCchhhhhHHHHHHHHHHHhCCCCceeeehH
Confidence 347999999999842 222233333343331 1234788999888 56654444443 22221 2357777666
Q ss_pred CCCCC-hHHHHHHHHHh--ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccc
Q psy7267 163 LKNRG-KGGAVTLGTKC--ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALAN 239 (569)
Q Consensus 163 ~~n~G-ka~AlN~Gl~~--A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~ 239 (569)
.+|.| |++++..=.+. ..+++.+++|||..+..|.+-++++.++.++ ++++++......+.++.
T Consensus 220 r~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P-------------~aGlIQt~P~~~gg~TL 286 (736)
T COG2943 220 RRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANP-------------DAGLIQTSPKASGGDTL 286 (736)
T ss_pred hhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCC-------------CCceeecchhhcCcchH
Confidence 67765 66666554444 3579999999999999999999999999985 44555544433333332
Q ss_pred hhhHHHHHHhhhhh-----hhHhhhcccccccccccceeeEeHHHHHHH--hccccC------CchhhchHHHHHHHHcC
Q psy7267 240 VQRSFFRNILMKGF-----HFIVWFTGVRTIRDTQCGFKLFTRKSALQL--FSSIHV------QRWAFDVELLFIAEVLH 306 (569)
Q Consensus 240 ~~~~~~r~~~~~~~-----~~l~~~~~~~~i~d~~~gf~lfrR~al~~I--~~~~~~------e~~~~D~EL~~Ra~~~G 306 (569)
..+ ...+..+.+ ..+.+...+.. ..=|....+|.+++.+- ++.+.. +-...|.-=...+++.|
T Consensus 287 ~AR--~qQFatrvYGpl~~~GLawW~~~Es--~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaG 362 (736)
T COG2943 287 YAR--CQQFATRVYGPLFTAGLAWWQLGES--HYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAG 362 (736)
T ss_pred HHH--HHHHHHHHhchHHhhhhHHHhcccc--ccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcC
Confidence 211 111222211 12222222211 11234568999888876 222221 22223544456678899
Q ss_pred CCEEEEEE---EEEEec
Q psy7267 307 IPMAEVSV---NWTEIE 320 (569)
Q Consensus 307 ~rI~~vPv---~~~~~~ 320 (569)
+.++..++ +|.|.+
T Consensus 363 W~v~ia~dL~GSyEE~P 379 (736)
T COG2943 363 WGVWIAYDLDGSYEELP 379 (736)
T ss_pred ceEEEeccCCCchhhCC
Confidence 99887763 444444
No 68
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.65 E-value=1.2e-06 Score=97.13 Aligned_cols=231 Identities=16% Similarity=0.095 Sum_probs=138.7
Q ss_pred CccEEEEEeecCCCC-ChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC------CccHHHHHHHHhHh----------
Q psy7267 89 SVNLSVIVPAYNEQD-RLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS------TDKTMQVVHQYTEK---------- 151 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~-~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS------tD~T~eil~~~~~~---------- 151 (569)
.+.+-.+||+|||.+ .|..+|+|+..+ +||..+-=|+||.||- +-.|.+++-+....
T Consensus 24 ~~~~i~~v~cy~E~~~~l~~tldsl~~~------~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~ 97 (527)
T PF03142_consen 24 DKFVICLVPCYSEGEEELRTTLDSLATT------DYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEP 97 (527)
T ss_pred CceEEEEEccccCChHHHHHHHHHHHhc------CCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCC
Confidence 345677999999984 477788887766 7887777788888864 23466766543220
Q ss_pred ------------------------hC------------CCeEEEEE----------cCCCCChHHHHHHHHHh-------
Q psy7267 152 ------------------------CG------------EDIVRGLK----------LLKNRGKGGAVTLGTKC------- 178 (569)
Q Consensus 152 ------------------------~~------------~~~V~vi~----------~~~n~Gka~AlN~Gl~~------- 178 (569)
+. .|-+.++. .+.|+||-..+-..+..
T Consensus 98 ~~~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~ 177 (527)
T PF03142_consen 98 LSYVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFN 177 (527)
T ss_pred cceEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcC
Confidence 00 12233444 36788877654333321
Q ss_pred ----------------------ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeeccc
Q psy7267 179 ----------------------ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEA 236 (569)
Q Consensus 179 ----------------------A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~ 236 (569)
...||++.+|||+.++|+.+.+|++.+.++ +....++|.-...+.
T Consensus 178 ~~~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d-------------~~i~gvCG~t~i~n~ 244 (527)
T PF03142_consen 178 NPMTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERD-------------PKIGGVCGETRIDNK 244 (527)
T ss_pred CCCchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCC-------------CCeEEEeceeEEcCC
Confidence 124999999999999999999999999875 566667774332222
Q ss_pred -ccchh-hHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHH-----------------Hhc----cccC---C
Q psy7267 237 -LANVQ-RSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQ-----------------LFS----SIHV---Q 290 (569)
Q Consensus 237 -~~~~~-~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~-----------------I~~----~~~~---e 290 (569)
+++.. ...+....+...........+ .+.--.|+|.++|-++++. ..+ ++.. -
T Consensus 245 ~~s~~t~~Q~fEY~ish~l~Ka~Es~fG-~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~ 323 (527)
T PF03142_consen 245 GQSWWTMYQVFEYAISHHLQKAFESVFG-SVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLL 323 (527)
T ss_pred CCCHhhheeccchhHHHHHHHHHHHHhC-ceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhh
Confidence 22211 111222222222222222233 2333334677877766554 101 1111 1
Q ss_pred chhhchHHHHHHHHc--CCCEEEEEEE--EEEecCCccchhHHHHHHHHHHHHHHHHhcchhhH
Q psy7267 291 RWAFDVELLFIAEVL--HIPMAEVSVN--WTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWK 350 (569)
Q Consensus 291 ~~~~D~EL~~Ra~~~--G~rI~~vPv~--~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g~w~ 350 (569)
.++||-.|+..+.+. ++++.++|.. ++..+.+. ..++.||+||..+.+.
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a~T~aP~t~-----------~vflsQRRRWinSTi~ 376 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVAYTDAPETF-----------SVFLSQRRRWINSTIH 376 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccccccCCccH-----------HHHHHHhhhccchhHh
Confidence 456788898877777 7888988754 34444433 7788999999988754
No 69
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.43 E-value=3.5e-07 Score=91.05 Aligned_cols=145 Identities=10% Similarity=-0.009 Sum_probs=71.0
Q ss_pred CCCChHHHHHHHHHhccCcEEEEEcCCCCC-ChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccch-h
Q psy7267 164 KNRGKGGAVTLGTKCARGSIILFADADGAT-KFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANV-Q 241 (569)
Q Consensus 164 ~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~-~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~-~ 241 (569)
...+.+.|+|.|+++|+++|+++++.|..+ +++++..+++.++++++.+++|. .|.+.....+.+. .
T Consensus 38 ~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGv-----------aG~~~~~~~~~~w~~ 106 (217)
T PF13712_consen 38 NAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGV-----------AGSKRLPPNGVWWES 106 (217)
T ss_dssp S-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEES-----------EEEESS-S-TTS---
T ss_pred CCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEe-----------ecCCcCCCCCccccc
Confidence 346788999999999999999999999876 68999999999976644333321 2333221111100 0
Q ss_pred h----------HHHHHHhhhhh-hh-Hhh--hcccccccccccceeeEeHHHHHHHhccccCCch-hhchHHHHHHHHcC
Q psy7267 242 R----------SFFRNILMKGF-HF-IVW--FTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW-AFDVELLFIAEVLH 306 (569)
Q Consensus 242 ~----------~~~r~~~~~~~-~~-l~~--~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~-~~D~EL~~Ra~~~G 306 (569)
. +.......... .. +.. ......+...-+.+.+.+|+++ .. +...-.+| .+|++++.+++++|
T Consensus 107 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~-~f-de~~~~gfH~Ydvd~cl~~~~~G 184 (217)
T PF13712_consen 107 PNKVGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP-RF-DEDLFTGFHFYDVDQCLEARRAG 184 (217)
T ss_dssp EEEEEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB-------SS--SSSSHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC-CC-CccccCCcchHHHHHHHHHHHhC
Confidence 0 00000000000 00 000 0112233344456788899888 32 22212345 57999999999999
Q ss_pred CCEEEEEEEEEEecC
Q psy7267 307 IPMAEVSVNWTEIEG 321 (569)
Q Consensus 307 ~rI~~vPv~~~~~~G 321 (569)
+++...|....+..+
T Consensus 185 ~~v~~~~~~~~H~s~ 199 (217)
T PF13712_consen 185 YRVVVPPPWCIHFSG 199 (217)
T ss_dssp -EEEE-----EE-S-
T ss_pred CEEEecCceEEEcCC
Confidence 999666655445444
No 70
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.97 E-value=2e-05 Score=67.68 Aligned_cols=81 Identities=22% Similarity=0.184 Sum_probs=55.7
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC---h-HHHHHH
Q psy7267 99 YNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG---K-GGAVTL 174 (569)
Q Consensus 99 yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G---k-a~AlN~ 174 (569)
+||+..|++.|+..++. . --+++|+||||+|+|.++++++ +.+.++....... . ...++.
T Consensus 1 rne~~~L~~wl~~~~~l----G------~d~i~i~d~~s~D~t~~~l~~~------~~v~i~~~~~~~~~~~~~~~~~~~ 64 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLAL----G------VDHIYIYDDGSTDGTREILRAL------PGVGIIRWVDPYRDERRQRAWRNA 64 (97)
T ss_pred CChHHHHHHHHHHHHHc----C------CCEEEEEECCCCccHHHHHHhC------CCcEEEEeCCCccchHHHHHHHHH
Confidence 68888888888877543 1 2379999999999999999886 3466665443322 2 233344
Q ss_pred HHHh-ccCcEEEEEcCCCCCCh
Q psy7267 175 GTKC-ARGSIILFADADGATKF 195 (569)
Q Consensus 175 Gl~~-A~gd~Vv~lDaD~~~~p 195 (569)
..+. ..+||++++|+|..+.+
T Consensus 65 ~~~~~~~~dWvl~~D~DEfl~~ 86 (97)
T PF13704_consen 65 LIERAFDADWVLFLDADEFLVP 86 (97)
T ss_pred HHHhCCCCCEEEEEeeeEEEec
Confidence 3334 36799999999976543
No 71
>PLN02190 cellulose synthase-like protein
Probab=97.75 E-value=0.00071 Score=77.44 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=81.0
Q ss_pred CCccEEEEEeecC---CCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHH----------------
Q psy7267 88 PSVNLSVIVPAYN---EQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQY---------------- 148 (569)
Q Consensus 88 ~~p~VSVIIP~yN---E~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~---------------- 148 (569)
..|.|.|.|+++| |+.. -+++++++.+.- |||.+++-++|.|||...=|.+.+.|.
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl--~v~nTvLSilA~---dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~I 165 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPI--IVVNTVLSLLAV---NYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNV 165 (756)
T ss_pred cCCcceEEEecCCCCcCCHH--HHHHHHHHHHhc---cCCccccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCC
Confidence 4689999999999 5542 344555554433 999999999999999887776655440
Q ss_pred -----------------------------------hH---------------------------hhC-------------
Q psy7267 149 -----------------------------------TE---------------------------KCG------------- 153 (569)
Q Consensus 149 -----------------------------------~~---------------------------~~~------------- 153 (569)
.. +||
T Consensus 166 epRaPe~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~a~~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~~~~~~ 245 (756)
T PLN02190 166 RVRAPFRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWENKGGV 245 (756)
T ss_pred CcCCHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhccCCCCcccCCcccccCCCCCCCCccceEEEecCCCCc
Confidence 00 000
Q ss_pred -----CCeEEEEEcCCCCC-----hHHHHHHHHHhc----cCcEEEEEcCCCCC-ChhhHHHHHHHHHhc
Q psy7267 154 -----EDIVRGLKLLKNRG-----KGGAVTLGTKCA----RGSIILFADADGAT-KFADLEKLEDKLKEL 208 (569)
Q Consensus 154 -----~~~V~vi~~~~n~G-----ka~AlN~Gl~~A----~gd~Vv~lDaD~~~-~pd~L~~lv~~~~~~ 208 (569)
-|.+.++.++++.| ||+|+|.-++.+ ++.+|+.+|.|... +|+.+++.+-.+.+.
T Consensus 246 ~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~ 315 (756)
T PLN02190 246 GDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK 315 (756)
T ss_pred cccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence 01122333334444 999999999764 78999999999865 789999988887754
No 72
>PLN02195 cellulose synthase A
Probab=97.74 E-value=0.00074 Score=79.03 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhc----cCcEEEEEcCCCCCCh-hhHHHHHHHHHhc
Q psy7267 168 KGGAVTLGTKCA----RGSIILFADADGATKF-ADLEKLEDKLKEL 208 (569)
Q Consensus 168 ka~AlN~Gl~~A----~gd~Vv~lDaD~~~~p-d~L~~lv~~~~~~ 208 (569)
||+|+|.+++.+ ++++|+.+|+|..+.+ +.+++.+-.|.+.
T Consensus 437 KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~ 482 (977)
T PLN02195 437 KAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDP 482 (977)
T ss_pred ccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCc
Confidence 999999999854 6999999999987655 6899988888764
No 73
>PLN02189 cellulose synthase
Probab=97.71 E-value=0.00087 Score=78.85 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=41.0
Q ss_pred EEEEEcCCCCC-----hHHHHHHHHHh----ccCcEEEEEcCCCCCC-hhhHHHHHHHHHhc
Q psy7267 157 VRGLKLLKNRG-----KGGAVTLGTKC----ARGSIILFADADGATK-FADLEKLEDKLKEL 208 (569)
Q Consensus 157 V~vi~~~~n~G-----ka~AlN~Gl~~----A~gd~Vv~lDaD~~~~-pd~L~~lv~~~~~~ 208 (569)
+.++.++++.| ||+|+|..++. +++++|+.+|+|.... |+.+++.+=.|.+.
T Consensus 500 LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp 561 (1040)
T PLN02189 500 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP 561 (1040)
T ss_pred eEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCC
Confidence 44444444444 99999999954 5799999999999885 59999999888764
No 74
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.63 E-value=0.00054 Score=68.20 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=98.6
Q ss_pred cEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHH
Q psy7267 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGG 170 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~ 170 (569)
+++||||-+|.++.|...+..+...+..|.. ++.|+||+-- . .....+|.
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~-----~~~i~vi~Q~-~------------------------~~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQL-----DYRIFVIEQV-G------------------------NFRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcCC-----cEEEEEEEec-C------------------------Cccchhhh
Confidence 5999999999999999999999998888765 6778777531 0 11245677
Q ss_pred HHHHHHHhcc----CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHH
Q psy7267 171 AVTLGTKCAR----GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFR 246 (569)
Q Consensus 171 AlN~Gl~~A~----gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r 246 (569)
.+|.|+..|. .|++++=|.|..+..+.... ...+. + .-+..+.- . +
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~-------------p-~H~s~~~~------~-----~-- 102 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEG-------------P-RHLSVPLD------K-----F-- 102 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCC-------------C-eEEEEeec------c-----c--
Confidence 8888887763 57999999998877665331 11110 0 01111100 0 0
Q ss_pred HHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCC---chh-hchHHHHHHHHcCCCEEEEE
Q psy7267 247 NILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQ---RWA-FDVELLFIAEVLHIPMAEVS 313 (569)
Q Consensus 247 ~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e---~~~-~D~EL~~Ra~~~G~rI~~vP 313 (569)
....+....-||..+++|+.+.++ +..++ +|+ ||.||..|+..+|+++...+
T Consensus 103 -------------~~~lpy~~~~Gg~~~~~k~~f~~V--NGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~ 158 (219)
T cd00899 103 -------------HYKLPYKTYFGGVLALTREQFRKV--NGFSNAYWGWGGEDDDLYNRIKAAGLKITRPS 158 (219)
T ss_pred -------------ccccCcccccccceeeEHHHHHHh--CCcCCcCccCCcchHHHHHHHHHCCCeEEecc
Confidence 000011122357789999999999 44433 454 69999999999999988876
No 75
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=97.57 E-value=0.0015 Score=77.11 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=41.0
Q ss_pred EEEEcCCCCC-----hHHHHHHHHHh----ccCcEEEEEcCCCCCC-hhhHHHHHHHHHhc
Q psy7267 158 RGLKLLKNRG-----KGGAVTLGTKC----ARGSIILFADADGATK-FADLEKLEDKLKEL 208 (569)
Q Consensus 158 ~vi~~~~n~G-----ka~AlN~Gl~~----A~gd~Vv~lDaD~~~~-pd~L~~lv~~~~~~ 208 (569)
.++.++++.| ||+|+|..++. +++++|+.+|+|.... |+.+++.+=.|.+.
T Consensus 519 VYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp 579 (1079)
T PLN02638 519 VYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDP 579 (1079)
T ss_pred EEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCc
Confidence 4444455554 99999999965 4799999999998765 99999999888764
No 76
>KOG2571|consensus
Probab=97.28 E-value=0.0009 Score=77.57 Aligned_cols=155 Identities=16% Similarity=0.001 Sum_probs=95.3
Q ss_pred ChHHHHHHHHHhccC--cEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccc-hhhH
Q psy7267 167 GKGGAVTLGTKCARG--SIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALAN-VQRS 243 (569)
Q Consensus 167 Gka~AlN~Gl~~A~g--d~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~-~~~~ 243 (569)
++-..++...+.... ++|+++|+|+.++|+++.+|++.|+.+ +.++.++| +.....+++ ....
T Consensus 425 ~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~d-------------p~VggaCG-~I~~~~~~w~v~~Q 490 (862)
T KOG2571|consen 425 QHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDED-------------PQVGGACG-RILNKGGSWVVAYQ 490 (862)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccC-------------cccceecc-ccccCCCceEEeHH
Confidence 466677777777654 678999999999999999999999975 45566666 333333332 2222
Q ss_pred HHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHh----ccc--------cCCchhhchHHHHHHHHcCCCEEE
Q psy7267 244 FFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLF----SSI--------HVQRWAFDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 244 ~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~----~~~--------~~e~~~~D~EL~~Ra~~~G~rI~~ 311 (569)
.++...++....-..-..+ .+.-..|+|.+||-+++..-. .+. .-.++++|-.|+.++..+||++.+
T Consensus 491 ~FEY~Ish~l~Ka~ESvFG-~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y 569 (862)
T KOG2571|consen 491 NFEYAISHNLQKATESVFG-CVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKY 569 (862)
T ss_pred HHHHHHHHHHHHhhhhhce-eEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeee
Confidence 3333333332222222222 233344578899987776431 111 113567799999999999999999
Q ss_pred EEEE--EEEecCCccchhHHHHHHHHHHHHHHHHhcch
Q psy7267 312 VSVN--WTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLG 347 (569)
Q Consensus 312 vPv~--~~~~~GS~~~~~~~~~~~~~~~l~~r~ry~~g 347 (569)
++.. .++.+.+. ..++.||.||..|
T Consensus 570 ~a~s~a~t~~Pe~~-----------~efl~QrrRW~~s 596 (862)
T KOG2571|consen 570 VAASDAETEAPESF-----------LEFLNQRRRWLNS 596 (862)
T ss_pred eccccccccCcHhH-----------HHHHHHhhhhccc
Confidence 9743 33333322 4455566666665
No 77
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.02 Score=58.12 Aligned_cols=201 Identities=12% Similarity=0.019 Sum_probs=106.0
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCC---
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR--- 166 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~--- 166 (569)
++++++||+--.++ .+.+-.++...+.....=-+.+..+||++++.+.-+ ..++.+.... +++.++......
T Consensus 2 ~~~~~iiPv~~S~e-~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d--~~i~~~i~~~--~~~~yl~~~s~~~F~ 76 (346)
T COG4092 2 QPNGEIIPVAESEE-LPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD--RLIRSYIDPM--PRVLYLDFGSPEPFA 76 (346)
T ss_pred CCcceEeecchhhc-cchhHHHHHhhHhhhhhccccccEEEEEEecchhHH--HHHHHHhccc--cceEEEecCCCcccc
Confidence 45899999865443 344444444422211112355578999998876322 4556665554 676676643221
Q ss_pred ChHHHHHHHHHhcc----CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhh
Q psy7267 167 GKGGAVTLGTKCAR----GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQR 242 (569)
Q Consensus 167 Gka~AlN~Gl~~A~----gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~ 242 (569)
.-+...|.|...+. .++|+++|+|+....|..++++.-..-..- .-.-++-.|......-...+....
T Consensus 77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~--------~tnI~a~~vlPV~~LNk~~~~v~f 148 (346)
T COG4092 77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKM--------RTNIDAPLVLPVYHLNKADTQVFF 148 (346)
T ss_pred chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHH--------HhccCcceeeeeeecchhhhhHHH
Confidence 12556677776664 899999999999998888777744332100 000122334443332112221111
Q ss_pred HHHHHHh--hhhhhhHhhhccccc-ccccccceeeEeHHHHHHHhccccCCch----hhchHHHHHHHHc
Q psy7267 243 SFFRNIL--MKGFHFIVWFTGVRT-IRDTQCGFKLFTRKSALQLFSSIHVQRW----AFDVELLFIAEVL 305 (569)
Q Consensus 243 ~~~r~~~--~~~~~~l~~~~~~~~-i~d~~~gf~lfrR~al~~I~~~~~~e~~----~~D~EL~~Ra~~~ 305 (569)
.....+. +-....+........ .....++..++.|+.+-+. +..+|+| .+|.|+..|+...
T Consensus 149 ~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~t--gGydE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 149 DVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLT--GGYDERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred HHHHHhhhhHhhhhHHHHhCcccccccccccceEEEehhHHHHh--cCCccccccCCchhHHHHHHHHHH
Confidence 1111100 011111111111111 1223346679999999887 5556655 3599999998775
No 78
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.24 E-value=0.0021 Score=65.83 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred CCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC--ccHHHHHHHHhHhhC--------CCe
Q psy7267 87 EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST--DKTMQVVHQYTEKCG--------EDI 156 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt--D~T~eil~~~~~~~~--------~~~ 156 (569)
...++|-|+.|..|.+..+++.++.+.+. +||+..+.+=++.+.++ |+|.+.+++..++.. -..
T Consensus 22 ~~~e~VLILtplrna~~~l~~y~~~L~~L------~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~ 95 (269)
T PF03452_consen 22 RNKESVLILTPLRNAASFLPDYFDNLLSL------TYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRS 95 (269)
T ss_pred ccCCeEEEEEecCCchHHHHHHHHHHHhC------CCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcce
Confidence 45678999999999999999999888887 89999999977666677 889888875543310 046
Q ss_pred EEEEEcCCC--------------------CChHHHHHHHHHhc---cCcEEEEEcCCCCC-ChhhHHHHHH
Q psy7267 157 VRGLKLLKN--------------------RGKGGAVTLGTKCA---RGSIILFADADGAT-KFADLEKLED 203 (569)
Q Consensus 157 V~vi~~~~n--------------------~Gka~AlN~Gl~~A---~gd~Vv~lDaD~~~-~pd~L~~lv~ 203 (569)
|++++.+-. .--|.|+|..+..+ ..+||+++|+|..- +|+.|+.|++
T Consensus 96 itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 96 ITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred EEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 777664310 11567788888776 35899999999864 5555555544
No 79
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.17 E-value=0.0029 Score=68.82 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=65.2
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC----
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL---- 163 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~---- 163 (569)
..+.+-|+|-++|....+.+||++|++.-.. ...+.|+|-.||+++.+.++++++... ++.++..
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~------~~~fpIiVSQDg~~~~~~~vi~~y~~~-----v~~i~~~~~~~ 159 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYRPS------AEKFPIIVSQDGDDEEVAEVIKSYGDQ-----VTYIQHPDFSP 159 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH-S-------TTTS-EEEEE-TT-HHHHHHHHGGGGG-----SEEEE-S--S-
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcCCC------CCCccEEEEecCCcHHHHHHHHHhhhh-----heeeecCCcCC
Confidence 3456899999999999999999999986211 235679999999999999999887533 2333321
Q ss_pred -----CC-C-----C----hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHH
Q psy7267 164 -----KN-R-----G----KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLK 206 (569)
Q Consensus 164 -----~n-~-----G----ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~ 206 (569)
.+ . + -..|++..+..-+.+.++++..|..+.||+++-+.+...
T Consensus 160 i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ 217 (434)
T PF03071_consen 160 ITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLP 217 (434)
T ss_dssp ----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred ceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHH
Confidence 11 0 1 123455555444678999999999999999876665443
No 80
>PLN02248 cellulose synthase-like protein
Probab=97.13 E-value=0.0098 Score=70.64 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=34.5
Q ss_pred hHHHHHHHHH----hccCcEEEEEcCCCCCC-hhhHHHHHHHHHh
Q psy7267 168 KGGAVTLGTK----CARGSIILFADADGATK-FADLEKLEDKLKE 207 (569)
Q Consensus 168 ka~AlN~Gl~----~A~gd~Vv~lDaD~~~~-pd~L~~lv~~~~~ 207 (569)
||+|+|.-++ .+++++|+.+|+|.... ++.+++.+=.|.+
T Consensus 603 KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 603 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 9999999998 45899999999999865 5589998888876
No 81
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.11 E-value=0.014 Score=65.37 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=87.0
Q ss_pred CCCccEEEEEeecCC-CCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC-Ccc-----HHHHHHHHhHhhCCCeEEE
Q psy7267 87 EPSVNLSVIVPAYNE-QDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS-TDK-----TMQVVHQYTEKCGEDIVRG 159 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE-~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS-tD~-----T~eil~~~~~~~~~~~V~v 159 (569)
.....|.||||+.+. .+.+...++...+...+ +.++...+||..++ .|. ..+.++++.++++..++.+
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~-----~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~ 318 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLE-----TDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKW 318 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcc-----cCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEE
Confidence 345789999999999 77777777766554332 23366667766655 332 2357788888887678999
Q ss_pred EEcC-CCCChHHHHHHHHHhcc-CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 160 LKLL-KNRGKGGAVTLGTKCAR-GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 160 i~~~-~n~Gka~AlN~Gl~~A~-gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+... .+..++.|+..|++... .++++++|.|..++++.|.+.-..-..
T Consensus 319 i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~ 368 (499)
T PF05679_consen 319 ISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIP 368 (499)
T ss_pred EEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhc
Confidence 9887 77889999999999764 579999999999999999997665443
No 82
>PLN02400 cellulose synthase
Probab=96.97 E-value=0.01 Score=70.42 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=40.6
Q ss_pred EEEEEcCCCCC-----hHHHHHHHHHh----ccCcEEEEEcCCCCC-ChhhHHHHHHHHHhc
Q psy7267 157 VRGLKLLKNRG-----KGGAVTLGTKC----ARGSIILFADADGAT-KFADLEKLEDKLKEL 208 (569)
Q Consensus 157 V~vi~~~~n~G-----ka~AlN~Gl~~----A~gd~Vv~lDaD~~~-~pd~L~~lv~~~~~~ 208 (569)
+.++.++++.| ||+|+|.-++. +++.||+.+|.|-.. +++.+++.+=.|-+.
T Consensus 525 LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~ 586 (1085)
T PLN02400 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
T ss_pred eEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheecc
Confidence 33444445554 99999999995 479999999999877 788999888887764
No 83
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=96.49 E-value=0.043 Score=65.13 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhc----cCcEEEEEcCCCCC-ChhhHHHHHHHHHhc
Q psy7267 168 KGGAVTLGTKCA----RGSIILFADADGAT-KFADLEKLEDKLKEL 208 (569)
Q Consensus 168 ka~AlN~Gl~~A----~gd~Vv~lDaD~~~-~pd~L~~lv~~~~~~ 208 (569)
||+|+|.-++.+ ++.||+.+|.|... +++.+++.+=.+-+.
T Consensus 472 KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~ 517 (1044)
T PLN02915 472 KAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP 517 (1044)
T ss_pred hhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecC
Confidence 999999999986 78999999999865 677888877776653
No 84
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.46 E-value=0.087 Score=55.46 Aligned_cols=105 Identities=20% Similarity=0.333 Sum_probs=68.8
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC---ccH---HHHHHHHhHhhCCCeEEEEEcC
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST---DKT---MQVVHQYTEKCGEDIVRGLKLL 163 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt---D~T---~eil~~~~~~~~~~~V~vi~~~ 163 (569)
-+.+||||+.||.- .+|+-+++.+ |. +.-||||.|.+. |.- .+.++.+..-- +..+-+++..
T Consensus 50 ~~maIVVP~KdE~l---~lleGVL~gI-------Ph-~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQk 117 (381)
T TIGR02460 50 GKTAIVVPVKNEKL---HLLEGVLSGI-------PH-ECPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQK 117 (381)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcC-------CC-CCeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEcC
Confidence 45899999999994 4577777753 33 567889988776 432 34444443321 1334444422
Q ss_pred ----------------------CCCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 164 ----------------------KNRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 164 ----------------------~n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
-+-||+.++-.|+..|+ .+||-|+|||..++ .++.+-+..+..
T Consensus 118 Dp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yAa 185 (381)
T TIGR02460 118 DPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYAA 185 (381)
T ss_pred CHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHHh
Confidence 12589999999987764 59999999999775 555555555443
No 85
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.41 E-value=0.012 Score=61.27 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=74.1
Q ss_pred cEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEE-------EcC
Q psy7267 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGL-------KLL 163 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi-------~~~ 163 (569)
.++-.|=+.||+.+|+++|+|++..+. |.|+.=|.|||+|.|++.++.+++|+ -+.+. .++
T Consensus 88 ~~~~~iRvKnE~~tl~~si~S~Lpai~-----------~gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n~ 155 (347)
T PF06306_consen 88 NPWAFIRVKNEAMTLAESIESILPAID-----------EGVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIKNP 155 (347)
T ss_pred CcceEEEEcchhhhHHHHHHHHHHHHh-----------ccEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhccCC
Confidence 478899999999999999999999854 67888888999999999999999963 22221 111
Q ss_pred CC--CChHHHHHHHHHhc-cCcEEEEEcCCCCCChhhHHH
Q psy7267 164 KN--RGKGGAVTLGTKCA-RGSIILFADADGATKFADLEK 200 (569)
Q Consensus 164 ~n--~Gka~AlN~Gl~~A-~gd~Vv~lDaD~~~~pd~L~~ 200 (569)
+. -....=.|.++... +.+|++=+|+|-..+++.|-+
T Consensus 156 ~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~k 195 (347)
T PF06306_consen 156 KSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYK 195 (347)
T ss_pred chhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhh
Confidence 11 12344456666664 689999999999998877533
No 86
>KOG3916|consensus
Probab=96.35 E-value=0.038 Score=57.91 Aligned_cols=152 Identities=14% Similarity=0.200 Sum_probs=98.4
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
+.-+|+||||.+|.++.|.-.|.-+...+..|.. ++.|+||+-..++ ...
T Consensus 149 ar~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL-----~y~iyVieQ~g~~-------------------------~FN 198 (372)
T KOG3916|consen 149 ARHKVAIIIPFRNREEHLRYLLHHLHPFLQRQRL-----DYRIYVIEQAGNK-------------------------PFN 198 (372)
T ss_pred ccceeEEEeecccHHHHHHHHHHHhhHHHHhhhh-----ceeEEEEEecCCC-------------------------ccc
Confidence 3457999999999999999999999999988877 6789988653322 234
Q ss_pred hHHHHHHHHHhcc----CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhH
Q psy7267 168 KGGAVTLGTKCAR----GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRS 243 (569)
Q Consensus 168 ka~AlN~Gl~~A~----gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~ 243 (569)
+|.-+|.|+..|. -|-++|=|.|..+.. +. ....+.... . .
T Consensus 199 RakL~NVGf~eAlkd~~wdCfIFHDVDllPen-----------Dr----------------NlY~C~~~P-R-------H 243 (372)
T KOG3916|consen 199 RAKLLNVGFLEALKDYGWDCFIFHDVDLLPEN-----------DR----------------NLYGCPEQP-R-------H 243 (372)
T ss_pred HHHhhhhHHHHHHHhcCCCEEEEecccccccC-----------CC----------------CccCCCCCC-c-------c
Confidence 5667788887763 478999999976432 21 111111110 0 0
Q ss_pred HHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCch---hhchHHHHHHHHcCCCEEEEE
Q psy7267 244 FFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRW---AFDVELLFIAEVLHIPMAEVS 313 (569)
Q Consensus 244 ~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~---~~D~EL~~Ra~~~G~rI~~vP 313 (569)
+.- .+.+.....+....-||..+++++-+.+| .+...+-| ++|-||.-|...+|++|..-|
T Consensus 244 ~sv--------a~dk~gy~LPY~~~FGGVsalt~~qf~kI-NGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~ 307 (372)
T KOG3916|consen 244 MSV--------ALDKFGYRLPYKEYFGGVSALTKEQFRKI-NGFSNAFWGWGGEDDDLWNRVQLAGMKISRPP 307 (372)
T ss_pred hhh--------hhhhccccccchhhhCchhhccHHHHHHh-cCCCchhcccCCcchHHHHHHHhcCceeecCC
Confidence 000 01111111233333457779999999999 22222333 369999999999999998665
No 87
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.26 E-value=0.12 Score=54.70 Aligned_cols=105 Identities=21% Similarity=0.340 Sum_probs=68.4
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC---ccH---HHHHHHHhHhhCCCeEEEEEcC
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST---DKT---MQVVHQYTEKCGEDIVRGLKLL 163 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt---D~T---~eil~~~~~~~~~~~V~vi~~~ 163 (569)
-+.+||||+.||.- .+|+-+++.+ |. +.-||||.|.+. |.- .+.++.+..-- +..+-+++..
T Consensus 51 ~~mAIVVP~KdE~l---~lleGVL~gI-------Ph-~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t-~r~~i~vHQk 118 (393)
T PRK14503 51 GRMAIVVPVKNERL---KLLEGVLKGI-------PH-ECPIIVVSNSKREPPDRFKLEVDLVRHFYRLT-QRPIIIVHQK 118 (393)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcC-------CC-CCeEEEEeCCCCCCchHHHHHHHHHHHHHhhh-cCceEEEEcC
Confidence 45899999999994 4577777753 33 567888888765 432 34444443321 1334444422
Q ss_pred ----------------------CCCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 164 ----------------------KNRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 164 ----------------------~n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
-+-||+.++-.|+-.|+ .+||-|+|||..++ .++.+-+..+..
T Consensus 119 Dp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yAA 186 (393)
T PRK14503 119 DPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYAA 186 (393)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHHh
Confidence 12589999999987764 59999999999775 555555554443
No 88
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=96.23 E-value=0.046 Score=57.75 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=63.5
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC---ccH---HHHHHHHhHhhCCCeEEEEEcC
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST---DKT---MQVVHQYTEKCGEDIVRGLKLL 163 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt---D~T---~eil~~~~~~~~~~~V~vi~~~ 163 (569)
-+.+||||+.||. ...|+-+++.+ |. +.-||||.|.+. |.- .+.++++...- ...+-+++..
T Consensus 50 ~~maIVVP~KnE~---l~lleGVL~gI-------Ph-~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t-~r~~~~vHQk 117 (381)
T PF09488_consen 50 SKMAIVVPCKNEK---LKLLEGVLSGI-------PH-DCLIIVVSNSSREPVDRFKMEVDLLKHFCRLT-RRQIIIVHQK 117 (381)
T ss_dssp TTEEEEEEESS-----HHHHHHHHHCS--------T-TSEEEEEE---CSSSCHHHHHHHHHHHHHHHC-T--EEEEETT
T ss_pred hCcEEEEECCCCc---hhhhhhhhhcC-------CC-CCeEEEEECCCCCCccHHHHHHHHHHHHHHhh-cCceEEEecC
Confidence 3589999999999 45678887753 33 678999999888 654 45555554432 1345555533
Q ss_pred ----------------------CCCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 164 ----------------------KNRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 164 ----------------------~n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
-+-||+.++-.|+..|+ .+||-|+|||..+ |.++.+-+..+..
T Consensus 118 Dp~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyi-PGaV~EYvk~yAA 185 (381)
T PF09488_consen 118 DPGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYI-PGAVNEYVKDYAA 185 (381)
T ss_dssp -HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCC-cchHHHHHHHHHh
Confidence 13589999999988764 5999999999976 4555555555543
No 89
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=96.10 E-value=0.078 Score=53.80 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=74.1
Q ss_pred EEEEeecCCCCChHHHHH-HHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeE--EEEEcCCCC-C-
Q psy7267 93 SVIVPAYNEQDRLKPMLD-ETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIV--RGLKLLKNR-G- 167 (569)
Q Consensus 93 SVIIP~yNE~~~I~~~L~-sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V--~vi~~~~n~-G- 167 (569)
=|..-.||.++.|+.... ++++.+..... ++.=|-|+++||+|+|.+.++++......-+| .+...+... .
T Consensus 3 fIA~~l~~~~~iL~~~~~~~ll~li~~LGp----~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~ 78 (241)
T PF11735_consen 3 FIAANLYNNEDILPSLWGDALLELIRFLGP----ENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDE 78 (241)
T ss_pred EEEEEcccCHhHHHHHHHHHHHHHHHHhCc----CeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCccccc
Confidence 344456899999987777 88777665442 36778899999999999999998744311111 111111110 0
Q ss_pred ------------hHHHHHHHHHhc---------cCcEEEEEcCCCCCChhhHHHHHHHHH
Q psy7267 168 ------------KGGAVTLGTKCA---------RGSIILFADADGATKFADLEKLEDKLK 206 (569)
Q Consensus 168 ------------ka~AlN~Gl~~A---------~gd~Vv~lDaD~~~~pd~L~~lv~~~~ 206 (569)
.+.-+|.|++-- ..|-|+|+| |....++++-+|+..-.
T Consensus 79 ~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~ 137 (241)
T PF11735_consen 79 IERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRN 137 (241)
T ss_pred ccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcC
Confidence 367788888742 237899999 88888888888877655
No 90
>PLN02436 cellulose synthase A
Probab=95.87 E-value=0.076 Score=63.19 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhc----cCcEEEEEcCCC-CCChhhHHHHHHHHHhc
Q psy7267 168 KGGAVTLGTKCA----RGSIILFADADG-ATKFADLEKLEDKLKEL 208 (569)
Q Consensus 168 ka~AlN~Gl~~A----~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~~ 208 (569)
||+|+|..++.+ ++.||+.+|.|- .-+++.+++.+=.|-+.
T Consensus 550 KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~ 595 (1094)
T PLN02436 550 KAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 595 (1094)
T ss_pred hhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCC
Confidence 999999999864 789999999998 45788999988888764
No 91
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=95.05 E-value=0.063 Score=61.74 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=40.5
Q ss_pred EEEEEcCCCCC-----hHHHHHHHHHhc----cCcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 157 VRGLKLLKNRG-----KGGAVTLGTKCA----RGSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 157 V~vi~~~~n~G-----ka~AlN~Gl~~A----~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
+.++.++++.| ||+|+|..++.+ ++++|+.+|.|.. -+|+.+++.+-.+.+.
T Consensus 168 lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~ 229 (720)
T PF03552_consen 168 LVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDP 229 (720)
T ss_pred EEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccC
Confidence 34444455555 999999998764 7899999999984 5688999988888774
No 92
>KOG3588|consensus
Probab=94.67 E-value=0.33 Score=51.58 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=111.6
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC-CccH--HHHHHHHhHhhCCCeEEEEEcCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS-TDKT--MQVVHQYTEKCGEDIVRGLKLLK 164 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS-tD~T--~eil~~~~~~~~~~~V~vi~~~~ 164 (569)
..|.|.+++|...+.........++... +.++++++||-=|+ .|+- .+.+..+.+++ +++..+....
T Consensus 227 ~~pgih~i~pl~gr~~~f~rf~q~~c~~--------~d~~l~l~vv~f~~se~e~ak~e~~tslra~f--~~~q~l~lng 296 (494)
T KOG3588|consen 227 EDPGIHMIMPLRGRAAIFARFAQSICAR--------GDDRLALSVVYFGYSEDEMAKRETITSLRASF--IPVQFLGLNG 296 (494)
T ss_pred cCCCceEEEeccchHHHhhhhhHHHhcc--------CCCceEEEEEEecCCChHHHhhhHHHHHhhcC--CceEEecccc
Confidence 4567999999999988776666644332 33477877765444 4432 34555677777 6777777666
Q ss_pred CCChHHHHHHHHHhccCc-EEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeec-c-------
Q psy7267 165 NRGKGGAVTLGTKCARGS-IILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHL-E------- 235 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~gd-~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~-~------- 235 (569)
....|.|+..|.+.-+.+ .+.|.|.|..+.-++|.+.-..-. .|..+........ +
T Consensus 297 eFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt~---------------~gkqiyfPivFS~ynp~ivy~~ 361 (494)
T KOG3588|consen 297 EFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNTI---------------LGKQIYFPIVFSQYNPEIVYEQ 361 (494)
T ss_pred hhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhccC---------------CCceEEEEEEEeecCcceeecC
Confidence 677899999999998665 566789999988888877543221 2222222211110 0
Q ss_pred cccchhhHHHHHHhhhhhhhHhhhccccc-ccccccceeeEeHHHHHHHhccc--cCCchh-hchHHHHHHHHcCCCEEE
Q psy7267 236 ALANVQRSFFRNILMKGFHFIVWFTGVRT-IRDTQCGFKLFTRKSALQLFSSI--HVQRWA-FDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 236 ~~~~~~~~~~r~~~~~~~~~l~~~~~~~~-i~d~~~gf~lfrR~al~~I~~~~--~~e~~~-~D~EL~~Ra~~~G~rI~~ 311 (569)
+...+.. ..+. .....+ ..|.+-|..+.-|+-+.++ ++. .-++|+ +|++|..+..+.|.++..
T Consensus 362 ~~~~p~e---~~~~---------~~~~tGfwRdfGfGmtc~yrsd~~~v-gGFD~~I~GWG~EDV~Ly~K~v~~~l~viR 428 (494)
T KOG3588|consen 362 DKPLPAE---QQLV---------IKKDTGFWRDFGFGMTCQYRSDFLTV-GGFDMEIKGWGGEDVDLYRKYVHSGLKVIR 428 (494)
T ss_pred CCCCchh---Hhee---------eccccccccccCCceeEEeeccceee-cCcceeeeccCcchHHHHHHHHhcCcEEEe
Confidence 1111100 0000 000011 1222334444555555566 122 225776 699999999999999888
Q ss_pred EE
Q psy7267 312 VS 313 (569)
Q Consensus 312 vP 313 (569)
.|
T Consensus 429 ~p 430 (494)
T KOG3588|consen 429 TP 430 (494)
T ss_pred cC
Confidence 76
No 93
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=94.62 E-value=0.17 Score=51.13 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhhccCCCCceEEEE-EeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhc---cCcE
Q psy7267 108 MLDETIEFLNERRKKIPTFKYEIIV-VSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCA---RGSI 183 (569)
Q Consensus 108 ~L~sll~~l~~~~~~yp~~~~EIIV-VDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A---~gd~ 183 (569)
||.|+.+|.. + ++..+| +|+.+.+.-.+.++++.+.+ ++++++..++ .....++..+++.+ .+++
T Consensus 47 ~LpSl~~QTd------~--dF~~lv~~~~~~P~~~~~rL~~l~~~~--p~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (234)
T PF11316_consen 47 CLPSLRAQTD------Q--DFTWLVLFDDDLPEPYRERLRDLLADY--PQFRIVFRPP-GPHRDAMRRAINAARRDGADP 115 (234)
T ss_pred HhhHHHhccC------C--CeEEEEEECCCCCHHHHHHHHHHhccC--CCcEEEecCC-chHHHHHHHHHhhhccCCCCE
Confidence 5666666633 2 677776 66666777788899988887 6677776443 33666777776443 3465
Q ss_pred EE--EEcCCCCCChhhHHHHHHHHHh
Q psy7267 184 IL--FADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 184 Vv--~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
++ .+|+|+-++.|+++++-+...+
T Consensus 116 ~~~~RLDdDDAl~~dFV~rlr~~a~~ 141 (234)
T PF11316_consen 116 VLQFRLDDDDALHRDFVARLRRAAAD 141 (234)
T ss_pred EEEEEECCcchhhHHHHHHHHHHHHh
Confidence 55 4599999999999999998864
No 94
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=93.98 E-value=0.54 Score=45.63 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=60.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+. ..|...++.+.+. . --+|+|+-+...+...+.+.+.. .++ ..+.+.......|.+.++..
T Consensus 23 ll~i~g~-pli~~~l~~l~~~----g------~~~v~vv~~~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~G~~~~l~~ 89 (223)
T cd06915 23 LAPVAGR-PFLEYLLEYLARQ----G------ISRIVLSVGYLAEQIEEYFGDGY-RGG-IRIYYVIEPEPLGTGGAIKN 89 (223)
T ss_pred ccEECCc-chHHHHHHHHHHC----C------CCEEEEEcccCHHHHHHHHcCcc-ccC-ceEEEEECCCCCcchHHHHH
Confidence 4555554 5566666665553 0 12677765543333333332110 011 23444554566888999999
Q ss_pred HHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 175 GTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
|++....|.++++++|...+ ..+.++++.+.+
T Consensus 90 a~~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~~ 121 (223)
T cd06915 90 ALPKLPEDQFLVLNGDTYFD-VDLLALLAALRA 121 (223)
T ss_pred HHhhcCCCCEEEEECCcccC-CCHHHHHHHHHh
Confidence 99988778899999999775 457787777754
No 95
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=93.60 E-value=0.38 Score=44.57 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=65.4
Q ss_pred EeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC-CCCChHHHHHH
Q psy7267 96 VPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL-KNRGKGGAVTL 174 (569)
Q Consensus 96 IP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~-~n~Gka~AlN~ 174 (569)
+|. +....|+.+++.+.+. . .-+|+|+-.. ++..+.+ .. .+++++.++ ...|-..++-.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~----~------~~~Ivvv~~~--~~~~~~~----~~---~~~~~v~~~~~~~G~~~sl~~ 78 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREA----G------VDDIVVVTGE--EEIYEYL----ER---YGIKVVVDPEPGQGPLASLLA 78 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHH----T------ESEEEEEEST--HHHHHHH----TT---TTSEEEE-STSSCSHHHHHHH
T ss_pred eeE-CCccHHHHHHHHhhcc----C------CceEEEecCh--HHHHHHH----hc---cCceEEEeccccCChHHHHHH
Confidence 555 6666677777666554 0 1278877665 3222222 22 356777655 46899999999
Q ss_pred HHHhc-cCcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 175 GTKCA-RGSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 175 Gl~~A-~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
|++.. ..+.++++.+|.. ++++.++++++.+++.
T Consensus 79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 99999 8999999999995 6999999999999863
No 96
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=93.60 E-value=0.4 Score=55.30 Aligned_cols=105 Identities=15% Similarity=0.258 Sum_probs=68.4
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC---ccH---HHHHHHHhHhhCCCeEEEEEcC
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST---DKT---MQVVHQYTEKCGEDIVRGLKLL 163 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt---D~T---~eil~~~~~~~~~~~V~vi~~~ 163 (569)
-+..||||+.||.- .+|+-+++.+ |. +.-||||.|.+. |.- .+.++.+..-- +..+-+++..
T Consensus 55 ~~~aivvp~k~e~~---~~~~gvl~~i-------p~-~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~-~~~~~~vhq~ 122 (694)
T PRK14502 55 KKMAIVLPIKDEDL---KVFEGVLSGI-------PH-DCLMIVISNSSKQEVDNFKNEKDIVNRFCRIT-HRQAIVVHQK 122 (694)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcC-------CC-CCeEEEEeCCCCCchHHHHHHHHHHHHHHHhh-cCceEEEEcC
Confidence 45899999999994 4577777753 33 567888888775 432 34444443321 1334444422
Q ss_pred ----------------------CCCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 164 ----------------------KNRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 164 ----------------------~n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
-+-||+.++-.|+..|+ .+||-|+|||..++ .++.+-+..+..
T Consensus 123 dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~~yaa 190 (694)
T PRK14502 123 NPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAKHFAT 190 (694)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHHHHHh
Confidence 13589999999988774 59999999999875 555555554443
No 97
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=93.54 E-value=0.16 Score=47.01 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=54.5
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
+.-+++||||-+|.++.|...|..+...+..|.. .+.|+||+-..+ ....
T Consensus 45 ~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~-----~y~I~vieQ~~~-------------------------~~FN 94 (136)
T PF13733_consen 45 PRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQL-----DYRIFVIEQVDN-------------------------GPFN 94 (136)
T ss_dssp -S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT------EEEEEEEEE-SS-------------------------S---
T ss_pred cccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcc-----eEEEEEEeeccC-------------------------CCCc
Confidence 3458999999999999999999999988888765 788999865321 1234
Q ss_pred hHHHHHHHHHhc----cCcEEEEEcCCCCCCh
Q psy7267 168 KGGAVTLGTKCA----RGSIILFADADGATKF 195 (569)
Q Consensus 168 ka~AlN~Gl~~A----~gd~Vv~lDaD~~~~p 195 (569)
+|.-+|.|+..| ..|.++|=|.|..+..
T Consensus 95 Rg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~ 126 (136)
T PF13733_consen 95 RGKLMNVGFLEALKDDDFDCFIFHDVDLLPEN 126 (136)
T ss_dssp HHHHHHHHHHHHHHHS--SEEEEE-TTEEESB
T ss_pred hhhhhhHHHHHHhhccCCCEEEEecccccccC
Confidence 666788888776 3589999999986543
No 98
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=93.44 E-value=1.6 Score=42.33 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=92.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC----CCeEEEEEc------CC
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG----EDIVRGLKL------LK 164 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~----~~~V~vi~~------~~ 164 (569)
++|+.|....|..+++.+.+. . --||+||-+...+.-.+.+.+.. .++ ..+++++.. +.
T Consensus 23 llpv~g~~pli~~~l~~l~~~----g------i~~iivv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNS----G------IRNVGVLTQYKSRSLNDHLGSGK-EWDLDRKNGGLFILPPQQRKGGDW 91 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHC----C------CCEEEEEeCCChHHHHHHHhCCC-cccCCCCCCCEEEeCcccCCCCCc
Confidence 788888645777777777663 1 23788877654433333322110 010 123555531 33
Q ss_pred CCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchh
Q psy7267 165 NRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQ 241 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~ 241 (569)
..|-+.|+..|....+ .|.++++.+|.. .+..+.++++...+. +.++.+...
T Consensus 92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~--------------~~~~t~~~~---------- 146 (200)
T cd02508 92 YRGTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIES--------------GADITVVYK---------- 146 (200)
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHc--------------CCCEEEEEh----------
Confidence 5789999999988763 578889999984 556788888877653 334443322
Q ss_pred hHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhcccc-CCchhhchHHHHHHHHcCCCEEEE
Q psy7267 242 RSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIH-VQRWAFDVELLFIAEVLHIPMAEV 312 (569)
Q Consensus 242 ~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~-~e~~~~D~EL~~Ra~~~G~rI~~v 312 (569)
..+|..+|+++++.++.+... .....+..|+.-.+... .++.-.
T Consensus 147 --------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~ 191 (200)
T cd02508 147 --------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAY 191 (200)
T ss_pred --------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEE
Confidence 345788999999876633221 12223456777777666 355443
No 99
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=93.27 E-value=2.3 Score=45.43 Aligned_cols=110 Identities=22% Similarity=0.180 Sum_probs=74.1
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHH--H----------------HHHHHhHh--
Q psy7267 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTM--Q----------------VVHQYTEK-- 151 (569)
Q Consensus 92 VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~--e----------------il~~~~~~-- 151 (569)
|=|.|..|-..+ ...+|.++.++. .+| +++-|=|++-...++.. . ....+...
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A-----~~P-~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 74 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARA-----TNP-ERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSA 74 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhc-----CCC-ceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccc
Confidence 567888888865 777888887763 244 46667677543322211 0 00111110
Q ss_pred ----------hCCCeEEEEEcC--CCCChHHHHHHHHHhccC-cEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 152 ----------CGEDIVRGLKLL--KNRGKGGAVTLGTKCARG-SIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 152 ----------~~~~~V~vi~~~--~n~Gka~AlN~Gl~~A~g-d~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
....+|++++.+ .-+|-..|++.+.+.-++ +|++.+|+...+.++|=+.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~ 144 (343)
T PF11397_consen 75 CAEWPDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSL 144 (343)
T ss_pred ccccccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhc
Confidence 112467777654 357889999999988775 799999999999999999999998875
No 100
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=93.20 E-value=0.73 Score=45.22 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=63.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+-+. ..|..+++++.+. . --+|++|-.... +.++++..+ .+++++..+...|.+.++..
T Consensus 20 l~~v~gk-pli~~~i~~l~~~------~----i~~i~iv~~~~~----~~i~~~~~~---~~~~~~~~~~~~g~~~ai~~ 81 (229)
T cd02540 20 LHPLAGK-PMLEHVLDAARAL------G----PDRIVVVVGHGA----EQVKKALAN---PNVEFVLQEEQLGTGHAVKQ 81 (229)
T ss_pred cceeCCc-cHHHHHHHHHHhC------C----CCeEEEEECCCH----HHHHHHhCC---CCcEEEECCCCCCCHHHHHH
Confidence 4565553 6666677666553 0 236666553222 233333222 35666766667899999999
Q ss_pred HHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR--GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
|+.... .|.++++++|. .+.++.+.++++.+.+
T Consensus 82 a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred HHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 998875 68999999998 4688999999988865
No 101
>PLN02917 CMP-KDO synthetase
Probab=92.92 E-value=2.7 Score=43.85 Aligned_cols=52 Identities=10% Similarity=-0.007 Sum_probs=36.9
Q ss_pred eEEEEEc--CCCCChHHHHHHHHHhcc--CcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 156 IVRGLKL--LKNRGKGGAVTLGTKCAR--GSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 156 ~V~vi~~--~~n~Gka~AlN~Gl~~A~--gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
++.++.. ....|-+.+ ..|++..+ .|+++++++|.. ++++.+.++++.+.+.
T Consensus 108 ~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~ 164 (293)
T PLN02917 108 GADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 164 (293)
T ss_pred CCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc
Confidence 3444433 233565555 46776664 689999999986 6899999999988653
No 102
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=92.48 E-value=2.1 Score=43.07 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.6
Q ss_pred cCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 180 RGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 180 ~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
..|+|+++|+|.- ++++.+.++++.+.+
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~ 115 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNLAT 115 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHhc
Confidence 5689999999986 799999999999854
No 103
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=92.38 E-value=0.84 Score=44.16 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+-+. ..|..+++++.+.- --+|+++-+...+...+.+.+... + ...+.++..+...|.+.++..
T Consensus 23 ll~v~g~-pli~~~l~~l~~~g----------~~~i~vv~~~~~~~i~~~~~~~~~-~-~~~i~~~~~~~~~g~~~al~~ 89 (217)
T cd04181 23 LLPIAGK-PILEYIIERLARAG----------IDEIILVVGYLGEQIEEYFGDGSK-F-GVNIEYVVQEEPLGTAGAVRN 89 (217)
T ss_pred ccEECCe-eHHHHHHHHHHHCC----------CCEEEEEeccCHHHHHHHHcChhh-c-CceEEEEeCCCCCccHHHHHH
Confidence 4555554 66666776665530 226777765443333333322110 1 134666665556889999999
Q ss_pred HHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 175 GTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+++....+.++++++|...+.+ +.++++...+
T Consensus 90 ~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~ 121 (217)
T cd04181 90 AEDFLGDDDFLVVNGDVLTDLD-LSELLRFHRE 121 (217)
T ss_pred hhhhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9998877899999999987665 5556665554
No 104
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.13 E-value=0.96 Score=42.51 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=41.4
Q ss_pred eEEEEEcC-CCCChHHHHHHHHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 156 IVRGLKLL-KNRGKGGAVTLGTKCAR--GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~-~n~Gka~AlN~Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
.+.++..+ ...|...++..|++.+. .|+++++.+|. .++++.+.++++.+.+
T Consensus 63 ~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 63 PVVVVINPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred CeEEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 35545533 23688899999999886 79999999998 5789999999988765
No 105
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=90.48 E-value=3.9 Score=39.76 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=58.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|. +....|..+++.+.+. . .--+|+||-+.... +..+.+........+.++.. ..|...++..
T Consensus 22 l~~i-~Gkpll~~~i~~l~~~----~-----~~~~ivVv~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~ 86 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLAH----P-----AIDEIVVVVPPDDI---DLAKELAKYGLSKVVKIVEG--GATRQDSVLN 86 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhcC----C-----CCCEEEEEeChhHH---HHHHHHHhcccCCCeEEECC--chHHHHHHHH
Confidence 4454 4455566666655442 0 01267776543322 22222111110123444432 2357888999
Q ss_pred HHHhc---cCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 175 GTKCA---RGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A---~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
|+++. ..|+++++++|.. ++++.++++++.+.+
T Consensus 87 al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~ 123 (218)
T cd02516 87 GLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKE 123 (218)
T ss_pred HHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhh
Confidence 99886 4789999999975 689999999998865
No 106
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=90.33 E-value=4.2 Score=39.05 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=40.4
Q ss_pred EEEEEcCC--CCChHHHHHHHHHhccCcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 157 VRGLKLLK--NRGKGGAVTLGTKCARGSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 157 V~vi~~~~--n~Gka~AlN~Gl~~A~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
++++.... ..|...++..|++..+.|+++++++|. .++++.++++++.+.+
T Consensus 63 ~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 LPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 44554332 367778999999988889999999998 5689999999998754
No 107
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=90.25 E-value=2.1 Score=40.44 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=59.6
Q ss_pred EeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC-CCCChHHHHHH
Q psy7267 96 VPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL-KNRGKGGAVTL 174 (569)
Q Consensus 96 IP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~-~n~Gka~AlN~ 174 (569)
+|. +....|+.+++.+.+. --+|+||-+...+. .. . .+++++..+ ...|...++..
T Consensus 21 l~~-~g~~ll~~~i~~l~~~-----------~~~iivv~~~~~~~----~~----~---~~~~~v~~~~~~~G~~~si~~ 77 (181)
T cd02503 21 LEL-GGKPLLEHVLERLKPL-----------VDEVVISANRDQER----YA----L---LGVPVIPDEPPGKGPLAGILA 77 (181)
T ss_pred eEE-CCEEHHHHHHHHHHhh-----------cCEEEEECCCChHH----Hh----h---cCCcEeeCCCCCCCCHHHHHH
Confidence 344 4455666666666543 12677775433221 11 1 245566544 35788899999
Q ss_pred HHHhccCcEEEEEcCCCC-CChhhHHHHHHHH
Q psy7267 175 GTKCARGSIILFADADGA-TKFADLEKLEDKL 205 (569)
Q Consensus 175 Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~ 205 (569)
|++..+.|.++++++|.. ++++.+..+++.+
T Consensus 78 ~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 78 ALRAAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred HHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 999988999999999995 6899999999887
No 108
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.11 E-value=2.4 Score=47.10 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=60.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|..+.. .|..+|+++.+. . .-+++++-....+...+.++ ... ..+.++..+...|.+.++..
T Consensus 26 llpi~gkp-li~~~l~~l~~~----g------~~~iivvv~~~~~~i~~~~~----~~~-~~~~~~~~~~~~Gt~~si~~ 89 (482)
T PRK14352 26 LHTLAGRS-MLGHVLHAAAGL----A------PQHLVVVVGHDRERVAPAVA----ELA-PEVDIAVQDEQPGTGHAVQC 89 (482)
T ss_pred eceeCCcc-HHHHHHHHHHhc----C------CCcEEEEECCCHHHHHHHhh----ccC-CccEEEeCCCCCCcHHHHHH
Confidence 55665543 566666666543 1 22566555432232222222 111 23555554556788889999
Q ss_pred HHHhcc---CcEEEEEcCCC-CCChhhHHHHHHHHHhc
Q psy7267 175 GTKCAR---GSIILFADADG-ATKFADLEKLEDKLKEL 208 (569)
Q Consensus 175 Gl~~A~---gd~Vv~lDaD~-~~~pd~L~~lv~~~~~~ 208 (569)
|++... .+.++++++|. .++++.+.++++.+.+.
T Consensus 90 al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~ 127 (482)
T PRK14352 90 ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE 127 (482)
T ss_pred HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 988764 37899999998 57889999999987653
No 109
>PLN02458 transferase, transferring glycosyl groups
Probab=89.98 E-value=1.8 Score=45.56 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=61.1
Q ss_pred CccEEEEEeecCC-CCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC-CccHHHHHHHHhHhhCCCeEEEEEcCCCC
Q psy7267 89 SVNLSVIVPAYNE-QDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS-TDKTMQVVHQYTEKCGEDIVRGLKLLKNR 166 (569)
Q Consensus 89 ~p~VSVIIP~yNE-~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS-tD~T~eil~~~~~~~~~~~V~vi~~~~n~ 166 (569)
.+.|-||-|+|.. .... .-|..+...+....+ ++.-|||+|+. ++.|.+++++..-. .+.+..++|.
T Consensus 111 ~rlIivVTPTY~rR~~Q~-a~LTRLahTL~lVp~-----pL~WIVVEd~~~t~~va~lLrrsGl~-----y~HL~~k~~~ 179 (346)
T PLN02458 111 RRLVIIVTPISTKDRYQG-VLLRRLANTLRLVPP-----PLLWIVVEGQSDSEEVSEMLRKTGIM-----YRHLVFKENF 179 (346)
T ss_pred CceEEEECCCCCCcchhH-HHHHHHHHHHhcCCC-----CceEEEEeCCCCCHHHHHHHHHcCCc-----eEEeccCCCC
Confidence 3458899999983 3332 334555554443321 57889999876 34455555553211 1222223332
Q ss_pred -----ChHHHHHHHHHhccC----cEEEEEcCCCCCChhhHHH
Q psy7267 167 -----GKGGAVTLGTKCARG----SIILFADADGATKFADLEK 200 (569)
Q Consensus 167 -----Gka~AlN~Gl~~A~g----d~Vv~lDaD~~~~pd~L~~ 200 (569)
.....+|.|+++.+. -+|.|.|.|...+-+..++
T Consensus 180 ~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeE 222 (346)
T PLN02458 180 TDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDE 222 (346)
T ss_pred CCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHH
Confidence 124569999998753 5888999999888666555
No 110
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=89.86 E-value=1.1 Score=45.53 Aligned_cols=104 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred EEEEE-eecC-CCC--ChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC----
Q psy7267 92 LSVIV-PAYN-EQD--RLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL---- 163 (569)
Q Consensus 92 VSVII-P~yN-E~~--~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~---- 163 (569)
++|.+ |.|. |.+ .+.+.|+-...+ . --.+++-|+++++.+.++++.+.+. ..|+++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~----G------~~~~~~Y~~~~~~~~~~vL~~Y~~~---g~v~~~~w~~~~~ 69 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLL----G------VDHFYFYDNSSSPSVRKVLKEYERS---GYVEVIPWPLRPK 69 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHh----C------CCEEEEEEccCCHHHHHhHHHHhhc---CeEEEEEcccccc
Confidence 55665 6665 433 344444443332 1 3367788888999999999998765 467776654
Q ss_pred ----------C-----CCChHHHHHHHHHhcc--CcEEEEEcCCCCCChhh----HHHHHHHHHhc
Q psy7267 164 ----------K-----NRGKGGAVTLGTKCAR--GSIILFADADGATKFAD----LEKLEDKLKEL 208 (569)
Q Consensus 164 ----------~-----n~Gka~AlN~Gl~~A~--gd~Vv~lDaD~~~~pd~----L~~lv~~~~~~ 208 (569)
. ..|...|.|..+...+ .+|++++|.|..+-|.. ...+.+.+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~ 135 (285)
T PF01697_consen 70 FPDFPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREF 135 (285)
T ss_pred cCCcccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhc
Confidence 1 1356778888888775 58999999999876655 66666666664
No 111
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=89.00 E-value=3.8 Score=41.10 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=62.0
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC--CccHHHHHHHHhHhhCCCeEEEEEcCCC--
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS--TDKTMQVVHQYTEKCGEDIVRGLKLLKN-- 165 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS--tD~T~eil~~~~~~~~~~~V~vi~~~~n-- 165 (569)
|.|-||-|+|.......+. ..+...+... | ++.-|||+|+. ++.|.+++++..-.| .++. .+.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~L-tRLa~TL~lV----p--~l~WIVVEd~~~~t~~va~lL~~sgl~y----~HL~-~~~~~~ 68 (223)
T cd00218 1 PTIYVVTPTYARPVQKAEL-TRLAHTLRLV----P--PLHWIVVEDSEEKTPLVAELLRRSGLMY----THLN-AKTPSD 68 (223)
T ss_pred CeEEEECCCCccchhhHHH-HHHHHHHhcC----C--ceEEEEEeCCCCCCHHHHHHHHHcCCce----EEec-cCCCCC
Confidence 3478899999888765553 3343333322 2 78899999987 455666666632211 2221 1212
Q ss_pred -----CChHHHHHHHHHhccC-------cEEEEEcCCCCCChhhHHH
Q psy7267 166 -----RGKGGAVTLGTKCARG-------SIILFADADGATKFADLEK 200 (569)
Q Consensus 166 -----~Gka~AlN~Gl~~A~g-------d~Vv~lDaD~~~~pd~L~~ 200 (569)
..-...+|.|+++.+. -+|.|.|.|...+-+.+++
T Consensus 69 ~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~e 115 (223)
T cd00218 69 PTWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEE 115 (223)
T ss_pred cccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHH
Confidence 1134679999987642 4788999999988766666
No 112
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=88.73 E-value=2.8 Score=39.71 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=60.1
Q ss_pred EeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC-CCChHHHHHH
Q psy7267 96 VPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK-NRGKGGAVTL 174 (569)
Q Consensus 96 IP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~-n~Gka~AlN~ 174 (569)
+|. +....|...++.+.+. . .-+|+||-+...+ ++.+++..+ .++.++..+. ..|...++..
T Consensus 20 l~~-~g~pll~~~i~~l~~~------~----~~~iivv~~~~~~---~~~~~~~~~---~~v~~v~~~~~~~g~~~si~~ 82 (188)
T TIGR03310 20 LPY-KGKTILEHVVDNALRL------F----FDEVILVLGHEAD---ELVALLANH---SNITLVHNPQYAEGQSSSIKL 82 (188)
T ss_pred ccc-CCeeHHHHHHHHHHHc------C----CCcEEEEeCCcHH---HHHHHhccC---CCeEEEECcChhcCHHHHHHH
Confidence 344 3455566666665543 0 2266666443222 233333322 3566666442 3578888999
Q ss_pred HHH-hccCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 175 GTK-CARGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~-~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
|++ ....|.++++++|.. ++++.++++++.+.+
T Consensus 83 ~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 117 (188)
T TIGR03310 83 GLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFAL 117 (188)
T ss_pred HhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHh
Confidence 988 456799999999984 689999999998765
No 113
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=87.93 E-value=5.1 Score=38.33 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC-CCChHHHHHHHHHh
Q psy7267 100 NEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK-NRGKGGAVTLGTKC 178 (569)
Q Consensus 100 NE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~-n~Gka~AlN~Gl~~ 178 (569)
+....|+.+++..++. . --+|+||-+.. ++..+.+.+..... .++.++.++. ..|.+.++..|+++
T Consensus 24 ~g~~ll~~~i~~~~~~------~----~~~i~vv~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 24 GETTLGSASLKTALSS------R----LSKVIVVIGEK-YAHLSWLDPYLLAD--ERIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCccHHHHHHHHHHhC------C----CCcEEEEeCCc-cchhhhhhHhhhcC--CCeEEEECCChhhhHHHHHHHHHHH
Confidence 4555566666555442 0 23678876543 32222222221111 3455554333 35788899999998
Q ss_pred c---cCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 179 A---RGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 179 A---~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
+ ..|+++++++|.. ++++.+.++++.+.+
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 6 4799999999985 688999999998765
No 114
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.67 E-value=12 Score=41.11 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=58.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|..+ ...|+..++++.+. . .-+|++|-....| .++++... ..++++..+...|-+.++..
T Consensus 27 l~~i~g-kpli~~~l~~l~~~----~------~~~iivv~~~~~~----~i~~~~~~---~~~~~v~~~~~~Gt~~al~~ 88 (456)
T PRK14356 27 LQTLLG-EPMLRFVYRALRPL----F------GDNVWTVVGHRAD----MVRAAFPD---EDARFVLQEQQLGTGHALQC 88 (456)
T ss_pred ecccCC-CcHHHHHHHHHHhc----C------CCcEEEEECCCHH----HHHHhccc---cCceEEEcCCCCCcHHHHHH
Confidence 444443 44555566655432 1 1257666443222 23332221 35666766666788888888
Q ss_pred HHHhcc---CcEEEEEcCCC-CCChhhHHHHHHHHH
Q psy7267 175 GTKCAR---GSIILFADADG-ATKFADLEKLEDKLK 206 (569)
Q Consensus 175 Gl~~A~---gd~Vv~lDaD~-~~~pd~L~~lv~~~~ 206 (569)
+++... .|.++++++|. .++++.++++++...
T Consensus 89 a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 89 AWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred HHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 877653 58999999998 578899999988754
No 115
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=87.58 E-value=5.4 Score=38.59 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=85.1
Q ss_pred CceEEEEEeCCCC--ccH-HHHHHHHhHhhCCCeEEEEEcCCC---CC--hHHHHHHHHHhcc-CcEEEEEcCCCCCChh
Q psy7267 126 FKYEIIVVSDGST--DKT-MQVVHQYTEKCGEDIVRGLKLLKN---RG--KGGAVTLGTKCAR-GSIILFADADGATKFA 196 (569)
Q Consensus 126 ~~~EIIVVDDgSt--D~T-~eil~~~~~~~~~~~V~vi~~~~n---~G--ka~AlN~Gl~~A~-gd~Vv~lDaD~~~~pd 196 (569)
..++++.+-..+. |.. .+.+++=.+++ ..+......+. .. -..+++.+.+++. .+||+.+|.|..+.++
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y--~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKY--GDILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhc--CceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 3677777766665 433 33343323344 44555544333 22 3467777777776 7999999999999988
Q ss_pred hHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhhhhHhhhcccccccccccceeeEe
Q psy7267 197 DLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFT 276 (569)
Q Consensus 197 ~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfr 276 (569)
.|.+.+...... .....+.|...... ... .....+...... . .....-.....|++.+++
T Consensus 97 ~l~~~L~~~~~~-------------~~~~~~~g~~~~~~-~~~-r~~~~kw~v~~~--~---y~~~~yP~y~~G~~yvls 156 (195)
T PF01762_consen 97 RLVSFLKSLKQD-------------PSKNSIYGGCIKNG-PPI-RDPSSKWYVSEE--E---YPDDYYPPYCSGGGYVLS 156 (195)
T ss_pred HhhhhhhhcccC-------------ccccccccccccCC-ccc-cccccCceeeee--e---cccccCCCcCCCCeEEec
Confidence 877777666111 11123333222110 000 000000000000 0 000001122345677999
Q ss_pred HHHHHHHhccccC-C-chhhchHHHHHHHHcCCCEEE
Q psy7267 277 RKSALQLFSSIHV-Q-RWAFDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 277 R~al~~I~~~~~~-e-~~~~D~EL~~Ra~~~G~rI~~ 311 (569)
+++++.+...... . -..+|+-+..-+.+.|.+...
T Consensus 157 ~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~ 193 (195)
T PF01762_consen 157 SDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIH 193 (195)
T ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccC
Confidence 9999999332221 2 223588888888888876543
No 116
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=87.42 E-value=12 Score=37.12 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=24.3
Q ss_pred cCcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 180 RGSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 180 ~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
..+.++++++|. .++++.+.++++.+..
T Consensus 90 ~~~~vlv~~~D~Pli~~~~l~~li~~~~~ 118 (245)
T PRK05450 90 DDDIVVNVQGDEPLIPPEIIDQVAEPLAN 118 (245)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHhc
Confidence 468999999999 6799999999998765
No 117
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=86.79 E-value=4.4 Score=38.41 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=41.8
Q ss_pred EEEEEcC--CCCChHHHHHHHHHhccCcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 157 VRGLKLL--KNRGKGGAVTLGTKCARGSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 157 V~vi~~~--~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
++++... ...|...++..|++..+.|+++++++|. .++++.++++++.+.+
T Consensus 62 ~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 62 LPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 4555542 3478899999999988889999999998 5799999999998865
No 118
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=86.20 E-value=7.9 Score=38.38 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=55.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC--CCeEEEEEcCCCCChHHHHHHHHH
Q psy7267 100 NEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG--EDIVRGLKLLKNRGKGGAVTLGTK 177 (569)
Q Consensus 100 NE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~--~~~V~vi~~~~n~Gka~AlN~Gl~ 177 (569)
+....|..+++.+.+. +. --+|+||-+.. ....++++..+++ ..++.++.. ..+...++..|++
T Consensus 28 ~gkpll~~~i~~~~~~--------~~-~~~ivVv~~~~---~~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~ 93 (230)
T PRK13385 28 VGEPIFIHALRPFLAD--------NR-CSKIIIVTQAQ---ERKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLD 93 (230)
T ss_pred CCeEHHHHHHHHHHcC--------CC-CCEEEEEeChh---hHHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHH
Confidence 4555666666665542 00 22566665432 2222222222221 124555532 2345688888888
Q ss_pred hcc-CcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 178 CAR-GSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 178 ~A~-gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
... .|+++++|+|.. ++++.+.++++.+.+.
T Consensus 94 ~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 94 RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 763 578999999985 6899999999988763
No 119
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=86.16 E-value=11 Score=36.50 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHhcc-----CcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 167 GKGGAVTLGTKCAR-----GSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 167 Gka~AlN~Gl~~A~-----gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
|...++..|++... .|+++++++|.. +.++.+.++++.+.+
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 56777888887653 389999999985 689999999999876
No 120
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=86.11 E-value=3.6 Score=40.73 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=59.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEE--cCCCCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLK--LLKNRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~--~~~n~Gka~Al 172 (569)
++|+-+. ..|...++++.++ . --+|+||-....+...+.+.++... .++.++. .....|-+.|+
T Consensus 25 llpv~g~-pli~~~l~~l~~~----g------~~~v~iv~~~~~~~~~~~l~~~~~~---~~~~i~~~~~~~~~G~~~al 90 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKA----G------VKEIILAVNYRPEDMVPFLKEYEKK---LGIKITFSIETEPLGTAGPL 90 (233)
T ss_pred cCeECCc-chHHHHHHHHHHC----C------CcEEEEEeeeCHHHHHHHHhccccc---CCeEEEeccCCCCCccHHHH
Confidence 5566665 5677777766653 1 1256666554444444444433212 2344433 34457888999
Q ss_pred HHHHHhccC--cEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 173 TLGTKCARG--SIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 173 N~Gl~~A~g--d~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
..|....+. +-++++++|...+.+ +..+++..++.
T Consensus 91 ~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 127 (233)
T cd06425 91 ALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKH 127 (233)
T ss_pred HHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHc
Confidence 999887753 446777999876655 67888877653
No 121
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=86.00 E-value=9.7 Score=39.98 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=69.3
Q ss_pred CccEEEEEeec--CCCCChHHHHHHHHHHHHhhhccCCCCceEEE-EEeCCCCccHHHHHHHHhHhhC----CCeEEEEE
Q psy7267 89 SVNLSVIVPAY--NEQDRLKPMLDETIEFLNERRKKIPTFKYEII-VVSDGSTDKTMQVVHQYTEKCG----EDIVRGLK 161 (569)
Q Consensus 89 ~p~VSVIIP~y--NE~~~I~~~L~sll~~l~~~~~~yp~~~~EII-VVDDgStD~T~eil~~~~~~~~----~~~V~vi~ 161 (569)
.+++.|=||+- ..+..|.++|.|+++.+.+... ...-|+ .+-|-..+.-...++++..+++ ...+.+|.
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er----~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~ 126 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEER----KDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVIS 126 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHh----cCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEe
Confidence 34599999984 4557799999999998765321 122222 2334333333444444433321 12344554
Q ss_pred cCC--------------------------CCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 162 LLK--------------------------NRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 162 ~~~--------------------------n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
.+. |.-.+..++.+ +..++|.+.+..|....|+++.++.+.+...
T Consensus 127 ~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 127 PPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred cccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 321 11223334433 3468999999999999999999999998875
No 122
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=85.81 E-value=7.2 Score=38.60 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=56.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
+.|. +....+..+++.+.+. .. --+|+|+-+.... . +.++++... .+++++..+...+.+ ....
T Consensus 18 ll~l-~Gkpli~~~i~~l~~~------~~---~~~ivVv~~~~~~-~-~~i~~~~~~---~~v~~v~~~~~~~l~-~~~~ 81 (233)
T cd02518 18 LKPL-GGKPLLEHLLDRLKRS------KL---IDEIVIATSTNEE-D-DPLEALAKK---LGVKVFRGSEEDVLG-RYYQ 81 (233)
T ss_pred cccc-CCccHHHHHHHHHHhC------CC---CCeEEEECCCCcc-c-HHHHHHHHH---cCCeEEECCchhHHH-HHHH
Confidence 4443 4455666666666543 00 1257776554431 1 122222222 346677655433222 2333
Q ss_pred HHHhccCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 175 GTKCARGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
+++....|+++++++|.. ++++.++++++.+.+
T Consensus 82 ~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 82 AAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 455556799999999985 689999999998876
No 123
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=85.41 E-value=7.2 Score=38.41 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=58.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+-+. ..|...++++.+. . --+|+||-....+...+.+++.. .++ ..+.++......|.+.++..
T Consensus 25 l~~i~g~-~li~~~l~~l~~~----~------~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~g~~~sl~~ 91 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREA----G------IEDIGIVVGPTGEEIKEALGDGS-RFG-VRITYILQEEPLGLAHAVLA 91 (236)
T ss_pred eeEECCc-chHHHHHHHHHHC----C------CCEEEEEcCCCHHHHHHHhcchh-hcC-CeEEEEECCCCCChHHHHHH
Confidence 5666554 6666666666553 1 22677776553333333333211 111 24556655556788999999
Q ss_pred HHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 175 GTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
|......+-++++.+|...+.+ +.++++.+..
T Consensus 92 a~~~i~~~~~li~~~D~~~~~~-~~~~~~~~~~ 123 (236)
T cd04189 92 ARDFLGDEPFVVYLGDNLIQEG-ISPLVRDFLE 123 (236)
T ss_pred HHHhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9988753445558899888665 5556665544
No 124
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=85.27 E-value=6.1 Score=38.99 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=67.8
Q ss_pred ecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC-CCChHHHHHHHH
Q psy7267 98 AYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK-NRGKGGAVTLGT 176 (569)
Q Consensus 98 ~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~-n~Gka~AlN~Gl 176 (569)
-++....+..+++..++. . --+||||-.+- ..+..+++.+. .+++++.+++ ..|.+..+..|+
T Consensus 27 p~~g~plv~~~~~~a~~a------~----~~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~ 90 (199)
T COG2068 27 PLDGKPLVRASAETALSA------G----LDRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGL 90 (199)
T ss_pred ccCCCcHHHHHHHHHHhc------C----CCeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHH
Confidence 344555566666666653 1 22788886654 33333443332 4688888765 589999999999
Q ss_pred HhccCc--EEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 177 KCARGS--IILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 177 ~~A~gd--~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
+++.++ .++++-+|.. +.++.+.++++.+..
T Consensus 91 ~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~ 124 (199)
T COG2068 91 RAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRA 124 (199)
T ss_pred HhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 999765 9999999986 899999999999987
No 125
>KOG3917|consensus
Probab=84.99 E-value=5.2 Score=40.10 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=90.3
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRG 167 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~G 167 (569)
...++.|++|.++.-+.+.+.+.-+.+.+..+.. ...|+|++. .| +. +..
T Consensus 72 S~HklavlVPfRdRfEELl~FvPHM~~FL~rq~v-----~HHI~vlNQ--vD----------------~f-------RFN 121 (310)
T KOG3917|consen 72 SYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQNV-----SHHILVLNQ--VD----------------PF-------RFN 121 (310)
T ss_pred cceeEEEEechHHHHHHHHHhhHHHHHHHhhcCc-----ceEEEEeec--cC----------------cc-------eec
Confidence 4568999999998887788888888887776654 556666643 11 11 234
Q ss_pred hHHHHHHHHHhcc--CcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHH
Q psy7267 168 KGGAVTLGTKCAR--GSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFF 245 (569)
Q Consensus 168 ka~AlN~Gl~~A~--gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~ 245 (569)
.+.-+|.|+..|+ .|||++-|.|..+-.+. +.- ++.-..|.+. ......-....+
T Consensus 122 RAsLINVGf~eas~~~DYiaMhDVDLLPlN~e-------l~Y---------------~fP~~~gp~H-iasP~lHPkYHY 178 (310)
T KOG3917|consen 122 RASLINVGFNEASRLCDYIAMHDVDLLPLNPE-------LPY---------------DFPGIGGPRH-IASPQLHPKYHY 178 (310)
T ss_pred hhhheecchhhhcchhceeeecccccccCCCC-------CCC---------------CCCccCCccc-ccCcccCchhhh
Confidence 5667888888875 69999999996432111 100 1111122222 111111111111
Q ss_pred HHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHHhccccCCchh---hchHHHHHHHHcCCCEEEE
Q psy7267 246 RNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWA---FDVELLFIAEVLHIPMAEV 312 (569)
Q Consensus 246 r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~~e~~~---~D~EL~~Ra~~~G~rI~~v 312 (569)
.+ ..+|..+.+++-+++. .++....|+ +|-|+..|+..+|..+...
T Consensus 179 ~~--------------------fvGGILll~~~hyk~~-NGMSN~yWGWGlEDDEFy~RI~dagLqltRp 227 (310)
T KOG3917|consen 179 EK--------------------FVGGILLLTLKHYKKL-NGMSNKYWGWGLEDDEFYLRIIDAGLQLTRP 227 (310)
T ss_pred hh--------------------hcceeEEeeHHHHHHh-cCccccccccCcccchhhheeccccceEecc
Confidence 11 1246778999999987 344444443 4999999999999876543
No 126
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=84.77 E-value=0.85 Score=38.12 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=29.6
Q ss_pred cccceeeEeHHHHHHHhccccCCc---h-hhchHHHHHHHHcCCCEEEEE
Q psy7267 268 TQCGFKLFTRKSALQLFSSIHVQR---W-AFDVELLFIAEVLHIPMAEVS 313 (569)
Q Consensus 268 ~~~gf~lfrR~al~~I~~~~~~e~---~-~~D~EL~~Ra~~~G~rI~~vP 313 (569)
..+|..+++|+.++++ +..+|. | .+|.||..|+..+|.++..++
T Consensus 19 ~~Gg~~~~~~~~f~~v--nGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 19 FFGGVFAISREDFEKV--NGFDERFWGWGGEDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp ---SEEEEEHHHHHHT--TSS-SS-TSCSSHHHHHHHHHHHTT---B-SS
T ss_pred eeEEEEEEeHHHHHHc--CCCCccccccCccHHHHHHHHHHcCCeEEecC
Confidence 4457789999999999 544443 4 369999999999999977654
No 127
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.43 E-value=6.1 Score=43.54 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=62.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+.+. ..|...|+++.+. . --+|+++-....+ ++.+.+ .+. ..+.++..++..|.+.++..
T Consensus 25 l~pi~g~-pli~~~l~~l~~~----g------i~~iiiv~~~~~~---~i~~~~-~~~--~~i~~~~~~~~~Gt~~al~~ 87 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREA----G------AGRIVLVVGHQAE---KVREHF-AGD--GDVSFALQEEQLGTGHAVAC 87 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhc----C------CCeEEEEECCCHH---HHHHHh-ccC--CceEEEecCCCCCHHHHHHH
Confidence 6666665 5566666655543 1 2266666443222 222222 221 35666655667899999999
Q ss_pred HHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR--GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
|++..+ .|.++++++|. .+.++.+.++++.+..
T Consensus 88 a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred HHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 988764 47999999998 5788999999988765
No 128
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=84.25 E-value=1.5 Score=46.18 Aligned_cols=107 Identities=20% Similarity=0.309 Sum_probs=64.0
Q ss_pred cEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhh-CC-CeEEEEEcCC--CC
Q psy7267 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC-GE-DIVRGLKLLK--NR 166 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~-~~-~~V~vi~~~~--n~ 166 (569)
.|.||||+-+.. |...+++-...+. ++.+|||-|+...+..++.+-+.-+. .. .-.+++-.+. ..
T Consensus 9 ~~divi~~~~~~--l~~~~~~wr~~~~---------~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~ 77 (348)
T PF03214_consen 9 EVDIVIPALRPN--LTDFLEEWRPFFS---------PYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPF 77 (348)
T ss_pred cccEEeeccccc--HHHHHHHHHHhhc---------ceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccc
Confidence 489999997743 3344444444322 68999999986554443332211000 00 0011111110 12
Q ss_pred ChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 167 GKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 167 Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
.-...+|.|+-.++.+|++++|.|+.+..|..-..++.+.++
T Consensus 78 ~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh 119 (348)
T PF03214_consen 78 KGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQH 119 (348)
T ss_pred cccchhhhHhhhcccceEEEEccccccccCCccceehhhhcc
Confidence 234578999999999999999999998888776666666654
No 129
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=84.04 E-value=18 Score=35.80 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHhccCcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 166 RGKGGAVTLGTKCARGSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 166 ~Gka~AlN~Gl~~A~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
.|.+ .+..+++....|.++++++|. .+.++.+.++++.+.+
T Consensus 75 ~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~ 116 (238)
T PRK13368 75 SGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLD 116 (238)
T ss_pred CccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHH
Confidence 3444 344566666678999999998 5789999999998865
No 130
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=83.71 E-value=6.5 Score=39.63 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=61.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+-+. ..|...|+++.+. .. --+|+|+-....+...+.+.+..... ...+.++...+..|-+.|+..
T Consensus 25 llpv~g~-plI~~~l~~l~~~---~g------i~~i~iv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~Gt~~al~~ 93 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKV---PD------LKEVLLIGFYPESVFSDFISDAQQEF-NVPIRYLQEYKPLGTAGGLYH 93 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhc---CC------CcEEEEEecCCHHHHHHHHHhccccc-CceEEEecCCccCCcHHHHHH
Confidence 6777776 6666666666541 00 23677776544443344443321111 124555554556888888888
Q ss_pred HHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+..... .+.++++.+|...+. .+..+++...+
T Consensus 94 a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~ 128 (257)
T cd06428 94 FRDQILAGNPSAFFVLNADVCCDF-PLQELLEFHKK 128 (257)
T ss_pred HHHHhhccCCCCEEEEcCCeecCC-CHHHHHHHHHH
Confidence 776642 477889999988654 48888887765
No 131
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=83.31 E-value=8.5 Score=36.96 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhcc--CcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 156 IVRGLKLLKNRGKGGAVTLGTKCAR--GSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~~n~Gka~AlN~Gl~~A~--gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
++.++.++ ..|.+.++..|++++. ++.++++-+|.. +.++.++++++.+++
T Consensus 65 ~v~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~ 118 (195)
T TIGR03552 65 GAPVLRDP-GPGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE 118 (195)
T ss_pred CCEEEecC-CCCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 56677644 4599999999998754 469999999986 689999999988754
No 132
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=83.10 E-value=3.7 Score=40.70 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=65.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeC-CCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSD-GSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDD-gStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
++|+.|....|...|+.+.+. . --++++|-. ...+.-.+.+++.. ++ ..++.++..+...|.+.|+.
T Consensus 24 ll~i~g~~pli~~~l~~l~~~----g------~~~ii~V~~~~~~~~i~~~~~~~~-~~-~~~i~~i~~~~~~Gta~al~ 91 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLANA----G------IKEIIVVVNGYKEEQIEEHLGSGY-KF-GVKIEYIVQPEPLGTAGALL 91 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHHT----T------CSEEEEEEETTTHHHHHHHHTTSG-GG-TEEEEEEEESSSSCHHHHHH
T ss_pred cceecCCCcchhhhhhhhccc----C------CceEEEEEeecccccccccccccc-cc-cccceeeecccccchhHHHH
Confidence 567777755566666665552 1 336455444 32222223332211 11 02577887788889999999
Q ss_pred HHHHhccCcE----EEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 174 LGTKCARGSI----ILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 174 ~Gl~~A~gd~----Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
.+......+- ++++.+|...+. .+..+++...+.
T Consensus 92 ~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~ 129 (248)
T PF00483_consen 92 QALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRES 129 (248)
T ss_dssp HTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHH
T ss_pred HHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcc
Confidence 9999988765 999999998777 778888887765
No 133
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=82.50 E-value=1.2 Score=45.47 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=59.0
Q ss_pred EEEEEee-cCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHH
Q psy7267 92 LSVIVPA-YNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGG 170 (569)
Q Consensus 92 VSVIIP~-yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~ 170 (569)
+||||-+ |+..+.|.+.|+.+.+. | .--||+||=++.... .+. .+..... ..|+++..+.| .-.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~--------~-~l~~IvVvWn~~~~~-P~~-~~~~~~~--vpV~~~~~~~n--sLn 65 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASS--------P-SLRKIVVVWNNPNPP-PPS-SKWPSTG--VPVRVVRSSRN--SLN 65 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTS--------T-TEEEEEEEEE-TS---THH-HHHT-----S-EEEEEESSH--HGG
T ss_pred CEEEEEecccchHHHHHHHHHHHcC--------C-CCCeEEEEeCCCCCC-Ccc-cccCCCC--ceEEEEecCCc--cHH
Confidence 4789999 88776666666555322 1 156899987763222 111 2222222 56788775543 111
Q ss_pred HHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhcc
Q psy7267 171 AVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELT 209 (569)
Q Consensus 171 AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~ 209 (569)
.+-.-....+.|.|+.+|.|..++.+.|+...+..++.+
T Consensus 66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~p 104 (247)
T PF09258_consen 66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFP 104 (247)
T ss_dssp GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCST
T ss_pred hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhCh
Confidence 222233466899999999999999999999999888753
No 134
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=82.25 E-value=8.3 Score=37.68 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=57.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC-CCCChHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL-KNRGKGGAVT 173 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~-~n~Gka~AlN 173 (569)
++|+-+. ..|...|+++.+. . --+|+++-+...+...+.+.+ ..+ .-.+...... +..|-+.|+.
T Consensus 24 llpi~g~-~li~~~l~~l~~~----g------i~~i~iv~~~~~~~i~~~~~~--~~~-~~~i~~~~~~~~~~g~~~~l~ 89 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAA----G------IRRIVVNTHHLADQIEAHLGD--SRF-GLRITISDEPDELLETGGGIK 89 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHC----C------CCEEEEEccCCHHHHHHHHhc--ccC-CceEEEecCCCcccccHHHHH
Confidence 5666665 6666666666553 1 226666654433333333322 111 1234444433 3568889999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHH
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLK 206 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~ 206 (569)
.|+.....+.++++++|...+.+ +.++++...
T Consensus 90 ~~~~~~~~~~~lv~~~D~i~~~~-~~~~~~~~~ 121 (221)
T cd06422 90 KALPLLGDEPFLVVNGDILWDGD-LAPLLLLHA 121 (221)
T ss_pred HHHHhcCCCCEEEEeCCeeeCCC-HHHHHHHHH
Confidence 99998866889999999988766 445555544
No 135
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=82.21 E-value=23 Score=35.22 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHhc----cCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 165 NRGKGGAVTLGTKCA----RGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A----~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
..|...++..|++.. +.|+|+++++|.. ..++.+.++++.+.+
T Consensus 75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 356778888888765 3699999999986 588999999999876
No 136
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=82.11 E-value=12 Score=36.33 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=42.8
Q ss_pred eEEEEEcCC-CCChHHHHHHHHHhccCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 156 IVRGLKLLK-NRGKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~~-n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
+++++.... ..|-..++..|++..+.|+++++++|.. ++++.++++++..++
T Consensus 67 ~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 466665443 3688899999999998899999999985 589999999998764
No 137
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=82.08 E-value=44 Score=34.92 Aligned_cols=198 Identities=12% Similarity=0.120 Sum_probs=98.5
Q ss_pred CCCccEEEEEee-cCCCCChHHHHHHHHHHHHhhhccCCCCceEEEE-EeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC
Q psy7267 87 EPSVNLSVIVPA-YNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIV-VSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK 164 (569)
Q Consensus 87 ~~~p~VSVIIP~-yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIV-VDDgStD~T~eil~~~~~~~~~~~V~vi~~~~ 164 (569)
...++.-+.+++ ++..+.+...+... . .++.|++ .=||..|+=.+.- +.+ .-|++.. .
T Consensus 38 ~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~-----------~nF~i~LfhYDg~vd~w~~~~--ws~----~aiHv~~--~ 97 (294)
T PF05212_consen 38 PKKPKYLLAMTVGIKQKDNVDAIVKKF-S-----------DNFDIMLFHYDGRVDEWDDFE--WSD----RAIHVSA--R 97 (294)
T ss_pred cCCCceEEEEEecHHHHhhhhHHHhhh-c-----------cCceEEEEEecCCcCchhhcc--ccc----ceEEEEe--c
Confidence 345677788887 66654444444333 1 1566654 5688888753321 111 2244433 2
Q ss_pred CCChH---HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCce-EEEeeeeecccccch
Q psy7267 165 NRGKG---GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNG-VIVGSRAHLEALANV 240 (569)
Q Consensus 165 n~Gka---~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~d-vV~G~r~~~~~~~~~ 240 (569)
++.|- .-...-=-.+.+|||.+.|-|..++...+.++++.+.... ..+ .++...++.. +--.... .......
T Consensus 98 kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~g-LeI--SQPALd~~~~~~~~~iT~-R~~~~~v 173 (294)
T PF05212_consen 98 KQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEG-LEI--SQPALDPDSSEIHHPITK-RRPDSEV 173 (294)
T ss_pred cceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhC-Ccc--cCcccCCCCceeeeeEEe-ecCCcee
Confidence 22221 1111111135789999999999999889999998888741 011 1111111111 1111000 0000000
Q ss_pred hhHHHHHHhhhhhhhHhhhccccccccccc------ceeeEeHHHHHHHh---ccccCCchhhchHHHHHHHHcCCCEEE
Q psy7267 241 QRSFFRNILMKGFHFIVWFTGVRTIRDTQC------GFKLFTRKSALQLF---SSIHVQRWAFDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 241 ~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~------gf~lfrR~al~~I~---~~~~~e~~~~D~EL~~Ra~~~G~rI~~ 311 (569)
.+. .. ...........+.| ..-+|+|++++-+. ++-...+|+.|.-+.+-+.....+|.-
T Consensus 174 ----hr~--~~-----~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGV 242 (294)
T PF05212_consen 174 ----HRK--TR-----GGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGV 242 (294)
T ss_pred ----Eec--cC-----CCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEE
Confidence 000 00 00000001111111 12479999998883 222236899999999888666778887
Q ss_pred EEEEEEEe
Q psy7267 312 VSVNWTEI 319 (569)
Q Consensus 312 vPv~~~~~ 319 (569)
+...+..+
T Consensus 243 VDs~~VvH 250 (294)
T PF05212_consen 243 VDSQYVVH 250 (294)
T ss_pred EeeEEEEE
Confidence 76555433
No 138
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=82.02 E-value=8.2 Score=42.21 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=60.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+. ..|..+|+++.+. . .-++++|-....+. ++++..+. .+++++..+...|-+.++..
T Consensus 23 ll~v~gk-pli~~~l~~l~~~----g------~~~iivvv~~~~~~----i~~~~~~~--~~i~~v~~~~~~G~~~sv~~ 85 (450)
T PRK14360 23 LHPLGGK-SLVERVLDSCEEL----K------PDRRLVIVGHQAEE----VEQSLAHL--PGLEFVEQQPQLGTGHAVQQ 85 (450)
T ss_pred cCEECCh-hHHHHHHHHHHhC----C------CCeEEEEECCCHHH----HHHHhccc--CCeEEEEeCCcCCcHHHHHH
Confidence 4555443 5666666666553 1 22555554432222 23332222 35777765556788888888
Q ss_pred HHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHhc
Q psy7267 175 GTKCAR--GSIILFADADG-ATKFADLEKLEDKLKEL 208 (569)
Q Consensus 175 Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~~ 208 (569)
+++... .+.++++|+|. .+.++.++++++.+.+.
T Consensus 86 ~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 86 LLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred HHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 887653 45678899998 46889999999888763
No 139
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=81.74 E-value=9.3 Score=42.01 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=58.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+ ...|+..++.+.+. . --+|+++-.... +.+++.... .+++++..++..|-+.|+..
T Consensus 27 l~~i~g-kpli~~~i~~l~~~----g------i~~i~vv~~~~~----~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~ 88 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANEL----G------AQHVHLVYGHGG----DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQ 88 (456)
T ss_pred cceeCC-hhHHHHHHHHHHhc----C------CCcEEEEECCCH----HHHHHhhcc---CCcEEEECCCCCCcHHHHHH
Confidence 456555 33455555555432 1 226666654221 223332221 35666665666788999999
Q ss_pred HHHhcc-CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR-GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~-gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
|++... .+.++++++|. .+.++.+.++++...+
T Consensus 89 a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~ 123 (456)
T PRK09451 89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQ 123 (456)
T ss_pred HHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhc
Confidence 988764 57899999998 4678889988876543
No 140
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.98 E-value=11 Score=41.32 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+-+. ..|..+|+++.+. .-+|+|+-+... +.++++.. ..+.++..++..|.+.|+..
T Consensus 22 l~~v~gk-pli~~~l~~l~~~-----------~~~i~vv~~~~~----~~i~~~~~----~~~~~~~~~~~~g~~~ai~~ 81 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKV-----------AQKVGVVLGHEA----ELVKKLLP----EWVKIFLQEEQLGTAHAVMC 81 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhc-----------CCcEEEEeCCCH----HHHHHhcc----cccEEEecCCCCChHHHHHH
Confidence 6677664 6666666666553 125666644221 33333322 23455554566788999999
Q ss_pred HHHhcc-CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR-GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~-gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
+++... .|.++++++|. .+..+.+.++++.+++
T Consensus 82 a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 82 ARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred HHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 988874 58999999997 5678889999988765
No 141
>KOG1476|consensus
Probab=80.49 E-value=20 Score=37.75 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=63.9
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC--CccHHHHHHHHhHhhCCCeEEEEEcCCCC
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS--TDKTMQVVHQYTEKCGEDIVRGLKLLKNR 166 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS--tD~T~eil~~~~~~~~~~~V~vi~~~~n~ 166 (569)
.|.|-||-|+|+......+ |..+.+.+... | ++.-|||+||+ +..+..++++-.- +..++. .+.+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~-LtRlanTL~~V----~--nLhWIVVEd~~~~~p~v~~~L~rtgl----~ythl~-~~t~~ 153 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAE-LTRLANTLRLV----P--NLHWIVVEDGEGTTPEVSGILRRTGL----PYTHLV-HKTPM 153 (330)
T ss_pred CccEEEEcccccchhHHHH-HHHHHHHHhhc----C--CeeEEEEecCCCCCHHHHHHHHHcCC----ceEEEe-ccCCC
Confidence 6779999999999855443 34444444322 2 78999999995 4456666665321 223333 34443
Q ss_pred C-h----HHHHHHHHHhcc---------CcEEEEEcCCCCCChhhHHH
Q psy7267 167 G-K----GGAVTLGTKCAR---------GSIILFADADGATKFADLEK 200 (569)
Q Consensus 167 G-k----a~AlN~Gl~~A~---------gd~Vv~lDaD~~~~pd~L~~ 200 (569)
+ + -..+|.|+++.+ .-+|.|-|.|...+-+..++
T Consensus 154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e 201 (330)
T KOG1476|consen 154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE 201 (330)
T ss_pred CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH
Confidence 3 2 467899988765 24677888888888665555
No 142
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=80.34 E-value=6 Score=43.12 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=60.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+. ..|..+++++.+. . ..+++++-....+ .+++...+ .++.++..++..|-+.++..
T Consensus 22 l~~i~gk-pli~~~l~~l~~~----g------~~~iiiv~~~~~~----~i~~~~~~---~~i~~~~~~~~~G~~~ai~~ 83 (451)
T TIGR01173 22 LHPLAGK-PMLEHVIDAARAL----G------PQKIHVVYGHGAE----QVRKALAN---RDVNWVLQAEQLGTGHAVLQ 83 (451)
T ss_pred hceeCCc-cHHHHHHHHHHhC----C------CCeEEEEECCCHH----HHHHHhcC---CCcEEEEcCCCCchHHHHHH
Confidence 5565554 5566666665543 1 2266666443222 22332222 24566655556788889999
Q ss_pred HHHhcc-CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR-GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~-gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
+++..+ .|.++++++|. .++++.++++++.+.+
T Consensus 84 a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~ 118 (451)
T TIGR01173 84 ALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQ 118 (451)
T ss_pred HHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhh
Confidence 988874 47899999998 5788999999988765
No 143
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=80.18 E-value=20 Score=34.88 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHhc-cCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 167 GKGGAVTLGTKCA-RGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 167 Gka~AlN~Gl~~A-~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
+...++..|++.. +.|+++++++|.. ++++.+.++++.+.+
T Consensus 76 ~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~ 118 (217)
T TIGR00453 76 TRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRK 118 (217)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence 4567888899887 6899999999984 799999999998865
No 144
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=80.08 E-value=24 Score=35.65 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=57.5
Q ss_pred cEEEEEeecCCCCChHH----------HHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEE
Q psy7267 91 NLSVIVPAYNEQDRLKP----------MLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGL 160 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~----------~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi 160 (569)
++.||||++=....++. ++..+.++..+-. --+|+|.-|. .+-.+.+++ ++ ..+...
T Consensus 3 ~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s~------~~rvvVATDd--e~I~~av~~----~G-~~avmT 69 (247)
T COG1212 3 KFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKSG------ADRVVVATDD--ERIAEAVQA----FG-GEAVMT 69 (247)
T ss_pred ceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHcC------CCeEEEEcCC--HHHHHHHHH----hC-CEEEec
Confidence 46778887544433322 2344444433211 3367776442 122333333 21 233333
Q ss_pred EcCCCCChHHHHHHHHHhc---cCcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 161 KLLKNRGKGGAVTLGTKCA---RGSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 161 ~~~~n~Gka~AlN~Gl~~A---~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
....+.|--. +..+++.. ..++|+-+-+|.. ++|..+.++++.+++.
T Consensus 70 ~~~h~SGTdR-~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~ 120 (247)
T COG1212 70 SKDHQSGTDR-LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS 120 (247)
T ss_pred CCCCCCccHH-HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC
Confidence 4344556444 34444443 4589999999975 6899999999999874
No 145
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=79.40 E-value=15 Score=38.32 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=61.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhH---hhCCCeEEEEEcCCCCChHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTE---KCGEDIVRGLKLLKNRGKGGA 171 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~---~~~~~~V~vi~~~~n~Gka~A 171 (569)
++|+++. ..|...|+.+... . --||++|-..... +.++++.. .+. .++.+...++..|.+.|
T Consensus 28 Llpv~gk-PmI~~~l~~l~~a----G------i~~I~ii~~~~~~---~~~~~~l~~g~~~g-~~i~y~~q~~~~Gta~A 92 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLA----G------IRDILIISTPQDT---PRFQQLLGDGSQWG-LNLQYKVQPSPDGLAQA 92 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHC----C------CCEEEEEecCCch---HHHHHHHcCccccC-ceeEEEECCCCCCHHHH
Confidence 7899997 6677666666653 1 2377766543221 22333321 121 35677776777899999
Q ss_pred HHHHHHhccC-cEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 172 VTLGTKCARG-SIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 172 lN~Gl~~A~g-d~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+..|...... +++++ -+|+.+....+..+++...+
T Consensus 93 l~~a~~~i~~~~~~lv-~gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 93 FIIGEEFIGGDDCALV-LGDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HHHHHHHhCCCCEEEE-ECCeeeeccCHHHHHHHHHh
Confidence 9999888754 55554 47776655668888887654
No 146
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=78.94 E-value=87 Score=32.63 Aligned_cols=192 Identities=11% Similarity=0.051 Sum_probs=107.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHh---hCCCeEEEEEcCCCCChHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK---CGEDIVRGLKLLKNRGKGGA 171 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~---~~~~~V~vi~~~~n~Gka~A 171 (569)
++|+|+.. .|.-+|+.+... . --||+||-+- +.....+++... +. .++++...++..|.|.|
T Consensus 25 LlpV~~KP-mi~y~l~~L~~a----G------I~dI~II~~~---~~~~~~~~llGdgs~~g-v~itY~~Q~~p~GlA~A 89 (286)
T COG1209 25 LLPVYDKP-MIYYPLETLMLA----G------IRDILIVVGP---EDKPTFKELLGDGSDFG-VDITYAVQPEPDGLAHA 89 (286)
T ss_pred cceecCcc-hhHhHHHHHHHc----C------CceEEEEecC---CchhhhhhhhcCccccC-cceEEEecCCCCcHHHH
Confidence 78999964 566667666554 1 2377777432 222233333221 22 57899988999999999
Q ss_pred HHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhccCC-CccccccCCCCCceEEEeeeeecccccchhhHHHHHHhh
Q psy7267 172 VTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDG-DYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILM 250 (569)
Q Consensus 172 lN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~-~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~ 250 (569)
.-.|-.....|=++++=+|..+.- .+.++++.+.+...+ .+.......+..+++|--.. ++
T Consensus 90 v~~a~~fv~~~~f~l~LGDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~-----~~------------ 151 (286)
T COG1209 90 VLIAEDFVGDDDFVLYLGDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDE-----DG------------ 151 (286)
T ss_pred HHHHHhhcCCCceEEEecCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcC-----CC------------
Confidence 999999998544444445777665 788888888764222 22222233333333332110 00
Q ss_pred hhhhhHhhhcccccccccccceeeEeHHHHHHHhcccc-C-CchhhchHHHHHHHHcCCCEEEEEEE-EEEecC
Q psy7267 251 KGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIH-V-QRWAFDVELLFIAEVLHIPMAEVSVN-WTEIEG 321 (569)
Q Consensus 251 ~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I~~~~~-~-e~~~~D~EL~~Ra~~~G~rI~~vPv~-~~~~~G 321 (569)
+......+.. .++..-...|+.+|+.++++.+ .... + .+-.+=+|........|..+.++... |--..|
T Consensus 152 ~v~~l~EKP~-~P~SNlAvtGlY~~d~~Vf~~~-~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtG 223 (286)
T COG1209 152 KVIGLEEKPK-EPKSNLAVTGLYFYDPSVFEAI-KQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTG 223 (286)
T ss_pred cEEEeEECCC-CCCCceeEEEEEEeChHHHHHH-HcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecC
Confidence 0000000000 0111222347889999999988 1221 1 11123556667788899999888765 555555
No 147
>KOG1413|consensus
Probab=78.94 E-value=6.7 Score=41.81 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred CCCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhh-----C-C--CeEE
Q psy7267 87 EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC-----G-E--DIVR 158 (569)
Q Consensus 87 ~~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~-----~-~--~~V~ 158 (569)
..+|.+.||+=+.|..+.+.+++++++.+-.. .+.+-|||.-|+++.++.+.++.+.... + + ..|.
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yrPs------aekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~ 137 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYRPS------AEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEIS 137 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhCcc------hhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccc
Confidence 34566889999999999999999999886311 2245688888999888888888875442 1 0 1122
Q ss_pred EEEcCC-CCC-------hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHH
Q psy7267 159 GLKLLK-NRG-------KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKL 205 (569)
Q Consensus 159 vi~~~~-n~G-------ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~ 205 (569)
+....+ ..+ ...|+|..+..-+.+.++.+-.|.-..||+..-+....
T Consensus 138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~ 192 (411)
T KOG1413|consen 138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTI 192 (411)
T ss_pred cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHH
Confidence 211111 111 34578888877788999999999999999887766543
No 148
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=77.99 E-value=6.9 Score=38.45 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=56.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC--CCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK--NRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~--n~Gka~Al 172 (569)
++|+-+. ..|...|+++.+. . --+|+||-.... +.++++.... .++.++.+++ ..|.+.++
T Consensus 23 l~~~~g~-~li~~~l~~l~~~----g------i~~i~vv~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~ 85 (229)
T cd02523 23 LLEINGK-PLLERQIETLKEA----G------IDDIVIVTGYKK----EQIEELLKKY--PNIKFVYNPDYAETNNIYSL 85 (229)
T ss_pred eeeECCE-EHHHHHHHHHHHC----C------CceEEEEeccCH----HHHHHHHhcc--CCeEEEeCcchhhhCcHHHH
Confidence 5555443 5566666665553 1 226777755322 2233332222 3567766543 47888999
Q ss_pred HHHHHhccCcEEEEEcCCCCCChhhHHHHH
Q psy7267 173 TLGTKCARGSIILFADADGATKFADLEKLE 202 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv 202 (569)
..|.... .+.++++++|...+++.++.+.
T Consensus 86 ~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 86 YLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 9999888 6788999999988876665554
No 149
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=77.88 E-value=11 Score=41.14 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=58.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+. ..|+.+|+.+.+. . --+|+++-....+.. +++..+.. ..+.++...+..|-+.++..
T Consensus 27 ll~v~gk-pli~~~l~~l~~~----g------i~~ivvv~~~~~~~i----~~~~~~~~-~~~~~~~~~~~~G~~~sl~~ 90 (446)
T PRK14353 27 LHPVAGR-PMLAHVLAAAASL----G------PSRVAVVVGPGAEAV----AAAAAKIA-PDAEIFVQKERLGTAHAVLA 90 (446)
T ss_pred cCEECCc-hHHHHHHHHHHhC----C------CCcEEEEECCCHHHH----HHHhhccC-CCceEEEcCCCCCcHHHHHH
Confidence 4565554 5566666665543 1 126666654322332 22222221 23444444556788888888
Q ss_pred HHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR--GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
+++... .|.++++++|. .++++.++++++..++
T Consensus 91 a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 91 AREALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 887753 57788899998 6789999999886543
No 150
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=77.69 E-value=13 Score=41.48 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=61.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+. ..|...|+++.++ . --+|+++-+...+ .++++... .++.++..+...|.+.++..
T Consensus 29 llpi~gk-pli~~~l~~l~~~----g------i~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~ 90 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDL----G------ARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLS 90 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhC----C------CCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHH
Confidence 4566554 5566666665543 1 2367776543222 23333222 35777776667799999988
Q ss_pred HHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHhc
Q psy7267 175 GTKCAR--GSIILFADADG-ATKFADLEKLEDKLKEL 208 (569)
Q Consensus 175 Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~~ 208 (569)
|++... .+-++++++|. .+.++.++++++...+.
T Consensus 91 ~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~ 127 (481)
T PRK14358 91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ 127 (481)
T ss_pred HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 888763 23367799998 57888999999887653
No 151
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=77.68 E-value=26 Score=34.47 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHhc-cCcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 167 GKGGAVTLGTKCA-RGSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 167 Gka~AlN~Gl~~A-~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
+.+.++..|++.. +.|+++++|+|.. ++++.++++++.+.+.
T Consensus 81 ~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 81 ERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 5788888999876 5789999999975 7899999999988763
No 152
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=77.51 E-value=12 Score=36.33 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=54.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhh--CCCeEEEEEcCCCCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC--GEDIVRGLKLLKNRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~--~~~~V~vi~~~~n~Gka~Al 172 (569)
++|..|. ..|..+|+.+.+. . --+|+|+-+... +.++++..+. ....+.++..+...|-+.++
T Consensus 23 ll~~~g~-pli~~~l~~l~~~----~------~~~iivv~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l 87 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIAQ----G------FRNFYISVNYLA----EMIEDYFGDGSKFGVNISYVREDKPLGTAGAL 87 (220)
T ss_pred cCeECCc-chHHHHHHHHHHC----C------CcEEEEECccCH----HHHHHHHCCccccCccEEEEECCCCCcchHHH
Confidence 5666665 5666666666553 1 126666654322 2223322211 01235555544556778887
Q ss_pred HHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 173 TLGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
..+.+ ...|.++++.+|... ...+..+++.+.+
T Consensus 88 ~~~~~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~ 120 (220)
T cd06426 88 SLLPE-KPTDPFLVMNGDILT-NLNYEHLLDFHKE 120 (220)
T ss_pred HHHHh-hCCCCEEEEcCCEee-ccCHHHHHHHHHh
Confidence 65544 336778888999755 4567888887765
No 153
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=77.44 E-value=28 Score=35.76 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=58.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
.+|..+....|..+++++.+.. ..-+|+||-+.. -.+.+++...+. ..++.++..+..+|-+.|+..
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~---------~~~~i~vvt~~~---~~~~v~~~l~~~-~~~~~ii~ep~~~gTa~ai~~ 92 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLV---------PPDRILVVTNEE---YRFLVREQLPEG-LPEENIILEPEGRNTAPAIAL 92 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCC---------CCCcEEEEechH---HHHHHHHHHhhc-CCCceEEECCCCCCcHHHHHH
Confidence 5777776666777776655430 012677776521 122333332221 145677766777888888888
Q ss_pred HHHhcc----CcEEEEEcCCCCCC-hhhHHHHHH
Q psy7267 175 GTKCAR----GSIILFADADGATK-FADLEKLED 203 (569)
Q Consensus 175 Gl~~A~----gd~Vv~lDaD~~~~-pd~L~~lv~ 203 (569)
+..... .++++++.+|..+. .+.+.++++
T Consensus 93 a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~ 126 (274)
T cd02509 93 AALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVK 126 (274)
T ss_pred HHHHHHhcCCCCeEEEecchhcccCHHHHHHHHH
Confidence 877653 57999999997765 344544443
No 154
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=77.42 E-value=33 Score=34.71 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=63.6
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHh
Q psy7267 99 YNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKC 178 (569)
Q Consensus 99 yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~ 178 (569)
++....++.+|+.+++. |. --||+|+-+...|...+.+-+. ... +++.++. ...........|+++
T Consensus 29 l~g~pll~~tl~~f~~~--------~~-i~~Ivvv~~~~~~~~~~~~~~~-~~~--~~v~~v~--GG~~R~~SV~~gL~~ 94 (230)
T COG1211 29 LGGRPLLEHTLEAFLES--------PA-IDEIVVVVSPEDDPYFEKLPKL-SAD--KRVEVVK--GGATRQESVYNGLQA 94 (230)
T ss_pred ECCEEehHHHHHHHHhC--------cC-CCeEEEEEChhhhHHHHHhhhh-ccC--CeEEEec--CCccHHHHHHHHHHH
Confidence 45556677888877774 21 3488888887666654443321 111 5677765 233467778888888
Q ss_pred cc---CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 179 AR---GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 179 A~---gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
.+ .++|++-||== .++++.+.++++...+
T Consensus 95 ~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~ 127 (230)
T COG1211 95 LSKYDSDWVLVHDAARPFLTPKLIKRLIELADK 127 (230)
T ss_pred hhccCCCEEEEeccccCCCCHHHHHHHHHhhcc
Confidence 76 79999999884 5688999999954443
No 155
>KOG4179|consensus
Probab=77.13 E-value=2 Score=46.44 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=69.0
Q ss_pred ccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCC--eEEEEEcCCC--
Q psy7267 90 VNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGED--IVRGLKLLKN-- 165 (569)
Q Consensus 90 p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~--~V~vi~~~~n-- 165 (569)
|.|-+.+-++|-+..++-.+..+-++ |||+...-|.+-.|.+.|++.+.++++.+..+.. +|.+-...+.
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~------Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s 76 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEG------DYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKS 76 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhcc------CCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccc
Confidence 44566666777777666666544444 8999999999999999999999999987764322 3333221110
Q ss_pred ----CC--------h---HHHHHHHHHhcc---CcEEEEEcCCCCC-ChhhHHHHHHH
Q psy7267 166 ----RG--------K---GGAVTLGTKCAR---GSIILFADADGAT-KFADLEKLEDK 204 (569)
Q Consensus 166 ----~G--------k---a~AlN~Gl~~A~---gd~Vv~lDaD~~~-~pd~L~~lv~~ 204 (569)
.| + ..-...+++.++ .||+++.|.|+.+ .++.+.-++..
T Consensus 77 ~~d~~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 77 YPDEHGPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred cCcccCCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHhc
Confidence 11 0 011122333333 5999999999976 56666665553
No 156
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=76.71 E-value=26 Score=34.61 Aligned_cols=93 Identities=10% Similarity=0.096 Sum_probs=53.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC--CCCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL--KNRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~--~n~Gka~Al 172 (569)
++|+ +....|...++.+.+. + .--+|+|+-+ .+ .++++..++ ++.++... ...|.+. +
T Consensus 20 l~~i-~gkpll~~~l~~l~~~--------~-~i~~ivvv~~--~~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~ 79 (239)
T cd02517 20 LADI-AGKPMIQHVYERAKKA--------K-GLDEVVVATD--DE----RIADAVESF---GGKVVMTSPDHPSGTDR-I 79 (239)
T ss_pred Cccc-CCcCHHHHHHHHHHhC--------C-CCCEEEEECC--cH----HHHHHHHHc---CCEEEEcCcccCchhHH-H
Confidence 4444 3445566666655542 0 0236777643 12 233333332 34444332 2345554 4
Q ss_pred HHHHHhccC--cEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 173 TLGTKCARG--SIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 173 N~Gl~~A~g--d~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
-.+++.... |.++++++|. .++++.+.++++.+.+
T Consensus 80 ~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~ 117 (239)
T cd02517 80 AEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKD 117 (239)
T ss_pred HHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 445555554 8999999998 6889999999988765
No 157
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=75.20 E-value=21 Score=35.39 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=57.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC-ccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST-DKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt-D~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
++|+-+ ...|...|+++.+. . --+|++|-.... +...+.+... ..++ -.+.+...+...|-+.|+.
T Consensus 25 llpv~~-~pli~~~l~~l~~~----g------i~~i~vv~~~~~~~~~~~~l~~~-~~~~-~~i~~~~~~~~~G~~~al~ 91 (240)
T cd02538 25 LLPVYD-KPMIYYPLSTLMLA----G------IREILIISTPEDLPLFKELLGDG-SDLG-IRITYAVQPKPGGLAQAFI 91 (240)
T ss_pred eeEECC-EEhHHHHHHHHHHC----C------CCEEEEEeCcchHHHHHHHHhcc-cccC-ceEEEeeCCCCCCHHHHHH
Confidence 456653 45566666655542 1 236777654321 2222222110 1111 2354454445678999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
.+......|-++++.+|..+.+..+.++++...+
T Consensus 92 ~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~ 125 (240)
T cd02538 92 IGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAA 125 (240)
T ss_pred HHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence 9988876666677788987766678888876654
No 158
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=75.08 E-value=14 Score=40.58 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=59.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|+-+. ..|..+|+++.+. . --+++++-....+ .++++.. ..+.++..++..|.+.++..
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~----g------i~~iivvv~~~~~----~i~~~~~----~~~~~~~~~~~~g~~~al~~ 84 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKA----G------IDKIVTVVGHGAE----EVKEVLG----DRSEFALQEEQLGTGHAVMQ 84 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhC----C------CCeEEEEeCCCHH----HHHHHhc----CCcEEEEcCCCCCHHHHHHH
Confidence 4566664 6666666666543 1 1255555332222 2333221 23445554556788899998
Q ss_pred HHHhcc--CcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 175 GTKCAR--GSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 175 Gl~~A~--gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
+++..+ .|.++++++|. .++++.++++++.+++
T Consensus 85 a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred HHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 888764 47899999998 5789999999988765
No 159
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=74.98 E-value=23 Score=36.70 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=60.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHh---hCCCeEEEEEcCCCCChHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK---CGEDIVRGLKLLKNRGKGGA 171 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~---~~~~~V~vi~~~~n~Gka~A 171 (569)
++|+++. ..|...|+.+... . --+|+||-.... .+.++++... ++ -++.++..++..|-+.|
T Consensus 24 Llpv~gk-PmI~~~L~~l~~a----G------i~~I~iv~~~~~---~~~~~~~lg~g~~~g-~~i~~~~q~~~~Gta~a 88 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLA----G------IRDILIISTPQD---TPRFQQLLGDGSQWG-VNLSYAVQPSPDGLAQA 88 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHC----C------CCEEEEEecCCc---HHHHHHHhccccccC-ceEEEEEccCCCCHHHH
Confidence 7899987 6677777666653 1 236766643221 1222332211 11 24666665667899999
Q ss_pred HHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 172 VTLGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 172 lN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+-.|......|-++++-+|..+....+..+++...+
T Consensus 89 l~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~ 124 (286)
T TIGR01207 89 FIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAA 124 (286)
T ss_pred HHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHh
Confidence 999998876543444458877666778888876654
No 160
>PLN03153 hypothetical protein; Provisional
Probab=74.27 E-value=20 Score=40.42 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=63.3
Q ss_pred CChHHHHHH------HHHh--ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccc
Q psy7267 166 RGKGGAVTL------GTKC--ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEAL 237 (569)
Q Consensus 166 ~Gka~AlN~------Gl~~--A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~ 237 (569)
.|.+.|++. .++. -..+|++++|+|+.+..+.|.++++.++. .-...+|........
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDp---------------tkp~YIGs~Se~~~q 252 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDP---------------SEMVYVGGPSESHSA 252 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCC---------------CCCEEeccccccccc
Confidence 466666655 3333 35699999999999976555555555543 335666755421110
Q ss_pred cchhhHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHH---hcccc---CCchhhchHHHHHHHHcCCCEEE
Q psy7267 238 ANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQL---FSSIH---VQRWAFDVELLFIAEVLHIPMAE 311 (569)
Q Consensus 238 ~~~~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I---~~~~~---~e~~~~D~EL~~Ra~~~G~rI~~ 311 (569)
. ...+..+. .+|+-.++++.+++++ ++.-. ...+..|..|..-+...|.++..
T Consensus 253 n--------------------~~f~~~fA-~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~ 311 (537)
T PLN03153 253 N--------------------SYFSHNMA-FGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSR 311 (537)
T ss_pred c--------------------cccccccc-cCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCcee
Confidence 0 00001122 2334458999777765 22211 12356688888777777877655
Q ss_pred EE
Q psy7267 312 VS 313 (569)
Q Consensus 312 vP 313 (569)
.|
T Consensus 312 ~~ 313 (537)
T PLN03153 312 EP 313 (537)
T ss_pred cC
Confidence 44
No 161
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=73.80 E-value=2.3 Score=44.99 Aligned_cols=87 Identities=16% Similarity=0.280 Sum_probs=50.9
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHH-------------HHHHHhHhhCCC
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQ-------------VVHQYTEKCGED 155 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~e-------------il~~~~~~~~~~ 155 (569)
...+.||||+-.+ .++|++-...+. ++++++|-|+..-.+.. ...+....
T Consensus 10 ~~evdIVi~TI~~----~~fL~~~r~~l~---------~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~---- 72 (346)
T PLN03180 10 KDELDIVIPTIRN----LDFLEMWRPFFQ---------PYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGP---- 72 (346)
T ss_pred CCcceEEEeccCc----hhHHHHHHHhcC---------cccEEEEecCCcccceeccCCCceeecCHHHHHhhhcc----
Confidence 3569999999555 356666666533 45667666633221111 11111110
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCCCChh
Q psy7267 156 IVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFA 196 (569)
Q Consensus 156 ~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd 196 (569)
.-+.| +..-.+.+|.|+-.++.+|++.+|.|+.+..|
T Consensus 73 ~~~~I----p~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 73 KASCI----SFKDSACRCFGYLVSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred ccccc----ccCcccchhhhheeecceEEEEECCCCCCCCC
Confidence 01111 12234568888888899999999999998777
No 162
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=73.54 E-value=21 Score=37.75 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=58.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCC-CCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDG-STDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDg-StD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
++|+-+. ..|...|+++.+. . --+|+++-.. ..+...+.+.+. ..+. ..+.++..+...|-+.++.
T Consensus 24 l~pv~g~-pli~~~l~~l~~~----g------i~~i~vv~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~G~~~al~ 90 (353)
T TIGR01208 24 LIPVANK-PILQYAIEDLAEA----G------ITDIGIVVGPVTGEEIKEIVGEG-ERFG-AKITYIVQGEPLGLAHAVY 90 (353)
T ss_pred ccEECCE-eHHHHHHHHHHHC----C------CCEEEEEeCCCCHHHHHHHHhcc-cccC-ceEEEEECCCCCCHHHHHH
Confidence 4566565 6666666666553 0 2266666554 333223322211 1111 2455555556789999999
Q ss_pred HHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 174 LGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
.+.+....+-++++.+|...+ ..+.++++.+.+
T Consensus 91 ~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~ 123 (353)
T TIGR01208 91 TARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEE 123 (353)
T ss_pred HHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHh
Confidence 999887554466778998775 567888887765
No 163
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=73.08 E-value=11 Score=38.49 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=53.0
Q ss_pred ccCcEEEEEcCCCCCChhhHHHHHHHHHhccCCCccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhhhhHhh
Q psy7267 179 ARGSIILFADADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVW 258 (569)
Q Consensus 179 A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~~~~~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~~~l~~ 258 (569)
...||.+++|.|+.+..+.|.+++..+.. .-++.+|.+................ .
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~---------------~~~~yiG~~~~~~~~~~~~~~~~~~----------~ 139 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDP---------------SEPIYIGRPSGDRPIEIIHRFNPNK----------S 139 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-T---------------TS--EEE-EE--------------------------
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCC---------------ccCEEeeeeccCccceeeccccccc----------c
Confidence 45699999999999987777777776654 3478888775321111000000000 0
Q ss_pred hcccccccccccceeeEeHHHHHHHh---cc--ccC--C--chhhchHHHHHHHH-cCCCEEEEEEEEE
Q psy7267 259 FTGVRTIRDTQCGFKLFTRKSALQLF---SS--IHV--Q--RWAFDVELLFIAEV-LHIPMAEVSVNWT 317 (569)
Q Consensus 259 ~~~~~~i~d~~~gf~lfrR~al~~I~---~~--~~~--e--~~~~D~EL~~Ra~~-~G~rI~~vPv~~~ 317 (569)
...+... ..+|+-.+++|.+++++. .+ ... + .+..|++|.+-+.. .|.++...|.-+.
T Consensus 140 ~~~~~~f-~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs 207 (252)
T PF02434_consen 140 KDSGFWF-ATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHS 207 (252)
T ss_dssp ------E-E-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---
T ss_pred CcCceEe-eCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcc
Confidence 0000011 123344699999999981 11 111 1 34679999988888 8888776654333
No 164
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=72.00 E-value=40 Score=37.12 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=95.2
Q ss_pred EEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhc-c-Cc-EEEEEcCCCC-CChhhHHHHHHH
Q psy7267 129 EIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCA-R-GS-IILFADADGA-TKFADLEKLEDK 204 (569)
Q Consensus 129 EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A-~-gd-~Vv~lDaD~~-~~pd~L~~lv~~ 204 (569)
+|++|-..-.|.-.+.+.+ . ..+.++...+..|-+.|...+..+. + .+ .++++-+|.. +.++.|+.|++.
T Consensus 47 ~i~vVvGh~ae~V~~~~~~----~--~~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~ 120 (460)
T COG1207 47 DIVVVVGHGAEQVREALAE----R--DDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAA 120 (460)
T ss_pred eEEEEEcCCHHHHHHHhcc----c--cCceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHh
Confidence 5666655544443333322 1 3477777788999999999999887 3 33 6888999985 588899988887
Q ss_pred HHhccCC-CccccccCCCCCceEEEeeeeecccccchhhHHHHHHhhhhhhhHhhhcccccccccccceeeEeHHHHHHH
Q psy7267 205 LKELTDG-DYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQL 283 (569)
Q Consensus 205 ~~~~~~~-~~~g~~~~~~~g~dvV~G~r~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~d~~~gf~lfrR~al~~I 283 (569)
...+... .+.......|.+++=++ .++++...+- ...-......+.+....+|..+|..+.+.+.
T Consensus 121 ~~~~~~~~tvLt~~~~dP~GYGRIv-----r~~~g~V~~I---------VE~KDA~~eek~I~eiNtGiy~f~~~~L~~~ 186 (460)
T COG1207 121 HPAHGAAATVLTAELDDPTGYGRIV-----RDGNGEVTAI---------VEEKDASEEEKQIKEINTGIYAFDGAALLRA 186 (460)
T ss_pred hhhcCCceEEEEEEcCCCCCcceEE-----EcCCCcEEEE---------EEcCCCCHHHhcCcEEeeeEEEEcHHHHHHH
Confidence 7643211 11111111222222111 1101000000 0000000011245556678889998888777
Q ss_pred hccccC---CchhhchHHHHHHHHcCCCEEEEEEE-EEEecC
Q psy7267 284 FSSIHV---QRWAFDVELLFIAEVLHIPMAEVSVN-WTEIEG 321 (569)
Q Consensus 284 ~~~~~~---e~~~~D~EL~~Ra~~~G~rI~~vPv~-~~~~~G 321 (569)
++.+.. .+-.|=+|+...+...|.++.-+-.. +.+-.|
T Consensus 187 L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~G 228 (460)
T COG1207 187 LPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLG 228 (460)
T ss_pred HHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcC
Confidence 444432 23334677888888999888766433 444445
No 165
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=71.75 E-value=52 Score=32.15 Aligned_cols=97 Identities=16% Similarity=0.072 Sum_probs=57.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC-----CCeEEEEEcCCCCChH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG-----EDIVRGLKLLKNRGKG 169 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~-----~~~V~vi~~~~n~Gka 169 (569)
++|+-|. ..|..+|+.+.+. . --||+||-... ..+.++++.++++ ...+.+....+..|-+
T Consensus 25 Llpv~g~-pli~~~l~~l~~~--g--------~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~ 90 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKA--G--------FEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTA 90 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHC--C--------CCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChH
Confidence 6666665 6666667666653 0 23777776421 1223333333220 0123333345668999
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
.|+..+.+....+ ++++.+|.. .+..+..+++....
T Consensus 91 ~al~~~~~~i~~d-~lv~~~D~i-~~~~l~~~l~~h~~ 126 (214)
T cd04198 91 DSLRHIRKKIKKD-FLVLSCDLI-TDLPLIELVDLHRS 126 (214)
T ss_pred HHHHHHHhhcCCC-EEEEeCccc-cccCHHHHHHHHhc
Confidence 9999999887555 778889965 44567787777665
No 166
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=71.73 E-value=25 Score=33.92 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=60.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.. ....|...++++.+. . --+|+||-+..++.+.+.+++ . ...+. .....|....+..
T Consensus 21 Ll~i~-GkplI~~vi~~l~~~------~----i~~I~Vv~~~~~~~~~~~l~~---~----~~~~~-~~~g~G~~~~l~~ 81 (183)
T TIGR00454 21 LIEVC-GRCLIDHVLSPLLKS------K----VNNIIIATSPHTPKTEEYINS---A----YKDYK-NASGKGYIEDLNE 81 (183)
T ss_pred EeEEC-CEEHHHHHHHHHHhC------C----CCEEEEEeCCCHHHHHHHHhh---c----CcEEE-ecCCCCHHHHHHH
Confidence 44544 445566666655442 0 126677665445555555443 1 12233 3566788889999
Q ss_pred HHHhc-cCcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 175 GTKCA-RGSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 175 Gl~~A-~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
|++.. ..+.++++-+|.. +.++.+..+++.+...
T Consensus 82 al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 82 CIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred HhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 99853 3678999999986 6899999999988664
No 167
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=71.31 E-value=27 Score=35.17 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCCCChh--hHHHHHHHHHh
Q psy7267 156 IVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFA--DLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd--~L~~lv~~~~~ 207 (569)
.+.++..+...|-+.|+..+.+..+.+-++++.+|..+..+ .+.++++....
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 45555555668999999999988876778888899877654 58888887765
No 168
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=71.13 E-value=24 Score=31.93 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=44.2
Q ss_pred ceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhc--cCcEEEEEcCCCC-CChhhHHHHHH
Q psy7267 127 KYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCA--RGSIILFADADGA-TKFADLEKLED 203 (569)
Q Consensus 127 ~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A--~gd~Vv~lDaD~~-~~pd~L~~lv~ 203 (569)
.+++++.-++..+.....-... . ..+.+.. ......+.-++.+++.+ ..+-|+++-+|+. ++++.|.+..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~-Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~ 83 (122)
T PF09837_consen 10 GADVVLAYTPDGDHAAFRQLWL---P--SGFSFFP-QQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFE 83 (122)
T ss_dssp SSEEEEEE----TTHHHHHHHH------TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHH
T ss_pred CcCEEEEEcCCccHHHHhcccc---C--CCCEEee-cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 5678887777766544321111 1 3455555 34556777888888877 5689999999984 68889999888
Q ss_pred HHHhc
Q psy7267 204 KLKEL 208 (569)
Q Consensus 204 ~~~~~ 208 (569)
.++++
T Consensus 84 ~L~~~ 88 (122)
T PF09837_consen 84 ALQRH 88 (122)
T ss_dssp HTTT-
T ss_pred HhccC
Confidence 88764
No 169
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=70.74 E-value=21 Score=38.33 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHhccCcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 166 RGKGGAVTLGTKCARGSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 166 ~Gka~AlN~Gl~~A~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
.|...++..|++....|+++++++|. .++++.++++++.+.+
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 57888899999998889999999997 5799999999998765
No 170
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=69.60 E-value=46 Score=31.93 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHh----ccCcEEEEEcCCCCCChhhHHHHHHHH
Q psy7267 163 LKNRGKGGAVTLGTKC----ARGSIILFADADGATKFADLEKLEDKL 205 (569)
Q Consensus 163 ~~n~Gka~AlN~Gl~~----A~gd~Vv~lDaD~~~~pd~L~~lv~~~ 205 (569)
++|.||-..-..-++. .+-++++++|+.+.+.++.|-+|.++|
T Consensus 117 e~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 117 EKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred cccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 4677876655555543 478999999999999999999998764
No 171
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=68.46 E-value=46 Score=34.57 Aligned_cols=107 Identities=10% Similarity=0.120 Sum_probs=64.0
Q ss_pred cEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC---C--
Q psy7267 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK---N-- 165 (569)
Q Consensus 91 ~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~---n-- 165 (569)
.++||....|-...+..++.|++.. ...++.+.|++|+.+++..+.+.+..... ...+..+..++ .
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n--------~~~~~~fhii~d~~s~~~~~~l~~~~~~~-~~~i~f~~i~~~~~~~~ 72 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFY--------RRNPLHFHLITDEIARRILATLFQTWMVP-AVEVSFYNAEELKSRVS 72 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHc--------CCCCEEEEEEECCcCHHHHHHHHHhcccc-CcEEEEEEhHHhhhhhc
Confidence 3778887755456666677777664 12368999999988877766665543332 13555555421 1
Q ss_pred ----CChHHH---HHHHHHh-c--cCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 166 ----RGKGGA---VTLGTKC-A--RGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 166 ----~Gka~A---lN~Gl~~-A--~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
...+.+ ....+.. - .-|=|+.+|+|..+. +.|.+|.+.+.+
T Consensus 73 ~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~-~di~eL~~~~~~ 123 (280)
T cd06431 73 WIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFA-TDIAELWKIFHK 123 (280)
T ss_pred cCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEc-CCHHHHHHHhhh
Confidence 111111 1222221 2 368999999999875 558888877543
No 172
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=68.27 E-value=34 Score=34.26 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCCCChh--hHHHHHHHHHh
Q psy7267 156 IVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFA--DLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd--~L~~lv~~~~~ 207 (569)
.+.+.......|-+.|+..+......+-++++.+|..+..+ .+.++++...+
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEK 147 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHH
Confidence 34445445568999999999887755667888888877554 78999988765
No 173
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=67.89 E-value=25 Score=35.26 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHhccC-cEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 165 NRGKGGAVTLGTKCARG-SIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~g-d~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
..|.+.|+-.+.+.... +.++++++|...+.+. ..+++....
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 35578888888888765 8899999998877655 888876654
No 174
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=65.09 E-value=8.1 Score=39.12 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC-C-ChHHHHHHHHHh
Q psy7267 101 EQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN-R-GKGGAVTLGTKC 178 (569)
Q Consensus 101 E~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n-~-Gka~AlN~Gl~~ 178 (569)
..+-|..++++|.+. .--|++||-+|=. .+.++++.++++ -..+++.++.- + +-+..+-.|...
T Consensus 30 gr~ii~~~i~~L~~~----------gi~e~vvV~~g~~---~~lve~~l~~~~-~~~~iv~N~~y~ktN~~~Sl~~akd~ 95 (239)
T COG1213 30 GREIIYRTIENLAKA----------GITEFVVVTNGYR---ADLVEEFLKKYP-FNAKIVINSDYEKTNTGYSLLLAKDY 95 (239)
T ss_pred CeEeHHHHHHHHHHc----------CCceEEEEeccch---HHHHHHHHhcCC-cceEEEeCCCcccCCceeEEeeehhh
Confidence 334567777777664 1458999987754 346666666763 26777776532 2 236678888888
Q ss_pred ccCcEEEEEcCCCCCChhhHHHHHHHH
Q psy7267 179 ARGSIILFADADGATKFADLEKLEDKL 205 (569)
Q Consensus 179 A~gd~Vv~lDaD~~~~pd~L~~lv~~~ 205 (569)
.+++ ++++|+|...+|..+++++++-
T Consensus 96 ~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 96 MDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred hcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 8888 7889999999999999998864
No 175
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=63.90 E-value=52 Score=32.21 Aligned_cols=96 Identities=8% Similarity=0.053 Sum_probs=53.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHH-HhHhhCCCeEEEEE-cCCCCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQ-YTEKCGEDIVRGLK-LLKNRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~-~~~~~~~~~V~vi~-~~~n~Gka~Al 172 (569)
++|+-+. ..|..+|+++.++ . --++++|-. ......+.+++ +.... .++.++. .....|-+.++
T Consensus 23 ll~i~g~-pli~~~l~~l~~~----g------~~~ivvv~~-~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~g~~~~l 88 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAKI----F------DSRFIFICR-DEHNTKFHLDESLKLLA--PNATVVELDGETLGAACTV 88 (231)
T ss_pred eeEECCE-EHHHHHHHhhhcc----C------CceEEEEEC-hHHhhhhhHHHHHHHhC--CCCEEEEeCCCCCcHHHHH
Confidence 5677665 5566666655543 0 125666653 22222222222 22112 2343332 24567899999
Q ss_pred HHHHHhcc-CcEEEEEcCCCCCChhhHHHHHHHH
Q psy7267 173 TLGTKCAR-GSIILFADADGATKFADLEKLEDKL 205 (569)
Q Consensus 173 N~Gl~~A~-gd~Vv~lDaD~~~~pd~L~~lv~~~ 205 (569)
..|..... .+.++++++|...+.+.. .++..+
T Consensus 89 ~~a~~~l~~~~~~lv~~~D~i~~~~~~-~~~~~~ 121 (231)
T cd04183 89 LLAADLIDNDDPLLIFNCDQIVESDLL-AFLAAF 121 (231)
T ss_pred HHHHhhcCCCCCEEEEecceeeccCHH-HHHHHh
Confidence 99988874 477888999998877644 444433
No 176
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=62.42 E-value=49 Score=33.38 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 164 KNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 164 ~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+..|-+.|+..+.+..+.+.++++++|...+ ..+..+++...+
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~ 143 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRK 143 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHH
Confidence 3467888998888887667778999998654 457777776654
No 177
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=62.32 E-value=36 Score=33.31 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=44.8
Q ss_pred eEEEEEcCCCC-ChHHHHHHHHHhccCcEEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 156 IVRGLKLLKNR-GKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 156 ~V~vi~~~~n~-Gka~AlN~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
.+.++....+. |--.++-+|+++..+++++++=.|.- ++++.++++.+.+.+.
T Consensus 61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~ 115 (192)
T COG0746 61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQT 115 (192)
T ss_pred CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhccc
Confidence 46677766655 99999999999999999999999985 5788889998888763
No 178
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=62.17 E-value=50 Score=34.49 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhccC-cEEEEEcCCCCCCh-------hhHHHHHHHHHh
Q psy7267 156 IVRGLKLLKNRGKGGAVTLGTKCARG-SIILFADADGATKF-------ADLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~~n~Gka~AlN~Gl~~A~g-d~Vv~lDaD~~~~p-------d~L~~lv~~~~~ 207 (569)
+++++..++..|-+.|+..+...... +++++ -+|...++ -.+.++++.+.+
T Consensus 98 ~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv-~gD~l~~~~~~~~~~~~l~~li~~~~~ 156 (297)
T TIGR01105 98 TIMNVRQAQPLGLGHSILCARPVVGDNPFVVV-LPDIIIDDATADPLRYNLAAMIARFNE 156 (297)
T ss_pred eEEEeeCCCcCchHHHHHHHHHHhCCCCEEEE-ECCeeccccccccchhHHHHHHHHHHH
Confidence 46677767779999999999988754 45544 48977654 378888887654
No 179
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=59.82 E-value=92 Score=30.26 Aligned_cols=70 Identities=20% Similarity=0.131 Sum_probs=59.2
Q ss_pred eEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCC-CChhhHHHHHHHHH
Q psy7267 128 YEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLEDKLK 206 (569)
Q Consensus 128 ~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~ 206 (569)
.||+++-+-++..|.+.+++ ..+.+++ .+..|.-.-+|.+++.... =++++-||.. +.|..+..+++.+.
T Consensus 42 d~i~v~isp~tp~t~~~~~~-------~gv~vi~-tpG~GYv~Dl~~al~~l~~-P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 42 DEIIVAISPHTPKTKEYLES-------VGVKVIE-TPGEGYVEDLRFALESLGT-PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred CcEEEEeCCCCHhHHHHHHh-------cCceEEE-cCCCChHHHHHHHHHhcCC-ceEEEecccccCCHHHHHHHHHHHh
Confidence 48999999999999998887 4588888 6678899999999998866 6677788974 68999999999887
No 180
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=59.19 E-value=1e+02 Score=29.81 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhccCc
Q psy7267 103 DRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGS 182 (569)
Q Consensus 103 ~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A~gd 182 (569)
..|..+++.+++. +. --+|+|.-| +++-.++++++. ..+.+.+ +.-..--.....++++...+
T Consensus 25 pLi~~~i~~a~~s------~~---~d~IvVaTd--~~~i~~~~~~~g-----~~v~~~~-~~~~~~~~r~~~~~~~~~~~ 87 (217)
T PF02348_consen 25 PLIEYVIERAKQS------KL---IDEIVVATD--DEEIDDIAEEYG-----AKVIFRR-GSLADDTDRFIEAIKHFLAD 87 (217)
T ss_dssp EHHHHHHHHHHHT------TT---TSEEEEEES--SHHHHHHHHHTT-----SEEEE---TTSSSHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHhC------CC---CCeEEEeCC--CHHHHHHHHHcC-----CeeEEcC-hhhcCCcccHHHHHHHhhhh
Confidence 3455556655543 11 236666533 333444555442 2343333 32233444556666666666
Q ss_pred ---EEEEEcCCCC-CChhhHHHHHHHHHhc
Q psy7267 183 ---IILFADADGA-TKFADLEKLEDKLKEL 208 (569)
Q Consensus 183 ---~Vv~lDaD~~-~~pd~L~~lv~~~~~~ 208 (569)
+++.+.+|+. ++|+.+.++++.+.+.
T Consensus 88 ~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~ 117 (217)
T PF02348_consen 88 DEDIVVRLQGDSPLLDPTSIDRAIEDIREA 117 (217)
T ss_dssp TTSEEEEESTTETT--HHHHHHHHHHHHHS
T ss_pred HHhhccccCCeeeECCHHHHHHHHHHHhcC
Confidence 9999999985 5899999999999885
No 181
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=58.86 E-value=91 Score=33.47 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=68.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhh--CCCeEEEEEcCCCCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC--GEDIVRGLKLLKNRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~--~~~~V~vi~~~~n~Gka~Al 172 (569)
++|+-|.. .|+..|+++.++ . --||+++-. -..+.++++-.+. ...++.++......|-++|+
T Consensus 26 llpI~gkP-ii~~~l~~L~~~----G------v~eivi~~~----y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l 90 (358)
T COG1208 26 LLPIAGKP-LIEYVLEALAAA----G------VEEIVLVVG----YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGAL 90 (358)
T ss_pred cceeCCcc-HHHHHHHHHHHC----C------CcEEEEEec----cchHHHHHHHhcccccCCceEEEecCCcCccHHHH
Confidence 67777664 455555555443 1 347777733 2233444433321 12578888877789999999
Q ss_pred HHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 173 TLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
..+.+...+|-++++.+|...+.+ +..+++...++
T Consensus 91 ~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 91 KNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred HHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 999999988999999999999988 99999888774
No 182
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=56.99 E-value=50 Score=36.30 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=56.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhH-----hhCCCeEEEEEcC------
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTE-----KCGEDIVRGLKLL------ 163 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~-----~~~~~~V~vi~~~------ 163 (569)
++|+-+....|...|+++.+. . --||+++-....+.-.+.+++... .+....+.++...
T Consensus 28 llpv~g~~plId~~L~~l~~~----G------i~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (436)
T PLN02241 28 AVPIGGNYRLIDIPMSNCINS----G------INKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEK 97 (436)
T ss_pred ceEeCCcceEehHHHHHHHhC----C------CCEEEEEeccCHHHHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCC
Confidence 677776656677777766653 1 236777665433333333322100 0000123333211
Q ss_pred -CCCChHHHHHHHHHhcc------CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 164 -KNRGKGGAVTLGTKCAR------GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 164 -~n~Gka~AlN~Gl~~A~------gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
...|.+.|+..++.... .+.++++.+|...+ ..+.++++...+
T Consensus 98 ~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~-~dl~~ll~~h~~ 147 (436)
T PLN02241 98 GWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYR-MDYMDFVQKHRE 147 (436)
T ss_pred ccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEc-cCHHHHHHHHHH
Confidence 13677888876654432 47789999999755 457777776655
No 183
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=55.71 E-value=54 Score=34.98 Aligned_cols=101 Identities=16% Similarity=0.059 Sum_probs=57.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC----CCeEEEE----EcCC--
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG----EDIVRGL----KLLK-- 164 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~----~~~V~vi----~~~~-- 164 (569)
++|+-+....|...|+.+.+. . --+|+|+-..-.+.-.+.+.+. .++. ..++.++ ...+
T Consensus 28 llpv~gk~pli~~~l~~l~~~----G------i~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 96 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCANS----G------IDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGGVTILPPYSESEGGK 96 (380)
T ss_pred eeeeCCceeehhHHHHHHHhC----C------CCEEEEEecCCHHHHHHHHhCC-CcccccCCCCCEEEeCCcccCCCCc
Confidence 677777645677777777663 1 2267777654333222222210 1110 0124433 1122
Q ss_pred -CCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 165 -NRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 165 -n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
..|-+.|+..+..... .|.++++.+|...+. .+.++++...+
T Consensus 97 ~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~ 142 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKE 142 (380)
T ss_pred ccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHh
Confidence 2688899988887754 478999999986654 56677766544
No 184
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=53.55 E-value=85 Score=32.29 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=14.8
Q ss_pred HHHhccCcEEEEEcCCCCC
Q psy7267 175 GTKCARGSIILFADADGAT 193 (569)
Q Consensus 175 Gl~~A~gd~Vv~lDaD~~~ 193 (569)
|+-.++-|=|+++|||..+
T Consensus 85 A~l~ssFeevllLDaD~vp 103 (271)
T PF11051_consen 85 ALLFSSFEEVLLLDADNVP 103 (271)
T ss_pred hhhhCCcceEEEEcCCccc
Confidence 4445677889999999975
No 185
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=52.43 E-value=3.3e+02 Score=30.18 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCCCccEEEEEeec-CCCCChHHHHHHHHHHHHhhhccCCCCceEEEE-EeCCCCccHHHHHHHHhH------hhCCCeE
Q psy7267 86 DEPSVNLSVIVPAY-NEQDRLKPMLDETIEFLNERRKKIPTFKYEIIV-VSDGSTDKTMQVVHQYTE------KCGEDIV 157 (569)
Q Consensus 86 ~~~~p~VSVIIP~y-NE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIV-VDDgStD~T~eil~~~~~------~~~~~~V 157 (569)
.+..|+++-+|-++ ++.+. ++.+++.++. | +-.++| +|--|++.-...+....+ .+ ++|
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~----l~RLL~aLYh-----p--rN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~--~NV 140 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEK----LWRTLRALYH-----P--RNQYVVHLDLESPAEERLELASRVENDPMFSKV--GNV 140 (421)
T ss_pred CCCCCeEEEEEEecCCcHHH----HHHHHHHhcC-----C--CceEEEEecCCCChHHHHHHHHHhhccchhhcc--CcE
Confidence 34578999999998 66444 4455555432 2 223444 677676653333322221 23 678
Q ss_pred EEEEcCC--CCC---hHHHHH----HHHHhc-cCcEEEEEcCCCCC
Q psy7267 158 RGLKLLK--NRG---KGGAVT----LGTKCA-RGSIILFADADGAT 193 (569)
Q Consensus 158 ~vi~~~~--n~G---ka~AlN----~Gl~~A-~gd~Vv~lDaD~~~ 193 (569)
.++.... +.| ...|.- ..++.+ .-||++.+.+.+.+
T Consensus 141 ~vl~k~~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyP 186 (421)
T PLN03183 141 YMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYP 186 (421)
T ss_pred EEEecceeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCccc
Confidence 8876322 233 222222 333322 45899999998864
No 186
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=51.38 E-value=16 Score=38.61 Aligned_cols=41 Identities=17% Similarity=0.022 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 168 KGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 168 ka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
.-.-+|.|++.|+.++|+++|.|..+.++.-+.+.+.....
T Consensus 115 iN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~ 155 (317)
T PF13896_consen 115 INLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRN 155 (317)
T ss_pred hHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhh
Confidence 66789999999999999999999999998888887777653
No 187
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=51.33 E-value=1.4e+02 Score=30.51 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=45.2
Q ss_pred EEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhc--cCcEEEEEcCCC-CCChhhHHHHHHHH
Q psy7267 129 EIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCA--RGSIILFADADG-ATKFADLEKLEDKL 205 (569)
Q Consensus 129 EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A--~gd~Vv~lDaD~-~~~pd~L~~lv~~~ 205 (569)
+|+||-+... .+.+++...+++ ..+.++ ....+....+-.|++.. ..++|++.|+|- .++++.+.++++..
T Consensus 70 ~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~ 143 (252)
T PLN02728 70 EIVVVCDPSY---RDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDA 143 (252)
T ss_pred eEEEEeCHHH---HHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHH
Confidence 6777765321 223333322321 234433 23344567788888875 357899999875 56889999999988
Q ss_pred Hhc
Q psy7267 206 KEL 208 (569)
Q Consensus 206 ~~~ 208 (569)
..+
T Consensus 144 ~~~ 146 (252)
T PLN02728 144 AVH 146 (252)
T ss_pred hhC
Confidence 764
No 188
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=51.28 E-value=1.1e+02 Score=33.28 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=56.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhc
Q psy7267 100 NEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCA 179 (569)
Q Consensus 100 NE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A 179 (569)
+....|..+++.+.+. +. --+|+||-+... .+..+++...+ ..++++. ...+...++..|++..
T Consensus 31 ~GkPll~~tl~~l~~~--------~~-i~~IvVVv~~~~---~~~~~~~~~~~--~~v~~v~--gG~~r~~SV~~gL~~l 94 (378)
T PRK09382 31 GGKPLWLHVLENLSSA--------PA-FKEIVVVIHPDD---IAYMKKALPEI--KFVTLVT--GGATRQESVRNALEAL 94 (378)
T ss_pred CCeeHHHHHHHHHhcC--------CC-CCeEEEEeChHH---HHHHHHhcccC--CeEEEeC--CCchHHHHHHHHHHhc
Confidence 4455566666666543 10 136777754222 23333332222 2244433 2234667788888888
Q ss_pred cCcEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 180 RGSIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 180 ~gd~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
..|+|++.|+|- .++++.++++++.+.+
T Consensus 95 ~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 95 DSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred CCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 779999999996 4688999999988765
No 189
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=47.72 E-value=33 Score=34.15 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCC-cc-HHHHHHHHhHhhCCCeEEEEEcCC-------CCCh---HHHHHHHHHhcc-------CcEEEEE
Q psy7267 127 KYEIIVVSDGST-DK-TMQVVHQYTEKCGEDIVRGLKLLK-------NRGK---GGAVTLGTKCAR-------GSIILFA 187 (569)
Q Consensus 127 ~~EIIVVDDgSt-D~-T~eil~~~~~~~~~~~V~vi~~~~-------n~Gk---a~AlN~Gl~~A~-------gd~Vv~l 187 (569)
++.-|||+|+++ .. +.+++++..-. .+.+..+. +..+ ...+|.|++..+ .-+|.|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~~sgl~-----y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFa 84 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLRRSGLP-----YTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFA 84 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHHHHTSE-----EEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE-
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHcCCc-----eeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEEC
Confidence 788999999874 23 56666663221 12222121 1122 458899998876 2478899
Q ss_pred cCCCCCChhhHHH
Q psy7267 188 DADGATKFADLEK 200 (569)
Q Consensus 188 DaD~~~~pd~L~~ 200 (569)
|.|...+.+.+++
T Consensus 85 DDdNtYdl~LF~e 97 (207)
T PF03360_consen 85 DDDNTYDLRLFDE 97 (207)
T ss_dssp -TTSEE-HHHHHH
T ss_pred CCCCeeeHHHHHH
Confidence 9999888665555
No 190
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=47.49 E-value=1.3e+02 Score=31.96 Aligned_cols=106 Identities=15% Similarity=0.026 Sum_probs=63.8
Q ss_pred ccEEEEEee-cCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC----
Q psy7267 90 VNLSVIVPA-YNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK---- 164 (569)
Q Consensus 90 p~VSVIIP~-yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~---- 164 (569)
..+.|+..+ .|=...+..++.|++.. .+...+.+.|++|+-+++..+.++++...++ ..+.++....
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~n-------n~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~ 95 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLN-------NPDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLK 95 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHh-------CCCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHh
Confidence 347777666 22334455556666553 2333689999999999999998988877753 3565554321
Q ss_pred ------CCChH-HHHHHHHHhc--cCcEEEEEcCCCCCChhhHHHHHHH
Q psy7267 165 ------NRGKG-GAVTLGTKCA--RGSIILFADADGATKFADLEKLEDK 204 (569)
Q Consensus 165 ------n~Gka-~AlN~Gl~~A--~gd~Vv~lDaD~~~~pd~L~~lv~~ 204 (569)
+...+ .++-..-+.- .-|-|+.+|+|..+. +.|.+|.+.
T Consensus 96 ~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~-~dl~~L~~~ 143 (334)
T PRK15171 96 SLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACK-GSIKELIDL 143 (334)
T ss_pred CCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEec-CCHHHHHhc
Confidence 11222 1222122222 478999999999765 457776644
No 191
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=47.29 E-value=1.2e+02 Score=29.59 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=56.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC---CCeEEEEEcCCCCChHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG---EDIVRGLKLLKNRGKGGA 171 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~---~~~V~vi~~~~n~Gka~A 171 (569)
++|+-|. ..|...|+++.++ . --+|+|+-+...+...+.+++...... ...+.++..++..|-+.|
T Consensus 25 llpi~g~-piI~~~l~~l~~~----G------i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~a 93 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALN----G------VEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA 93 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHC----C------CCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchH
Confidence 6788787 5677777766664 1 237777766444433333333211000 023566665555666666
Q ss_pred HHHHHHhc-cCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 172 VTLGTKCA-RGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 172 lN~Gl~~A-~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+....... -.+.++++.+|...+ ..+..+++...+
T Consensus 94 l~~~~~~~~~~~~flv~~gD~i~~-~dl~~~l~~h~~ 129 (217)
T cd04197 94 LRDLDAKGLIRGDFILVSGDVVSN-IDLKEILEEHKE 129 (217)
T ss_pred HHHHhhccccCCCEEEEeCCeeec-cCHHHHHHHHHH
Confidence 64332211 134467899998765 457777877765
No 192
>PRK10122 GalU regulator GalF; Provisional
Probab=47.13 E-value=1.6e+02 Score=30.56 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhcc-CcEEEEEcCCCCCChh-------hHHHHHHHHHh
Q psy7267 156 IVRGLKLLKNRGKGGAVTLGTKCAR-GSIILFADADGATKFA-------DLEKLEDKLKE 207 (569)
Q Consensus 156 ~V~vi~~~~n~Gka~AlN~Gl~~A~-gd~Vv~lDaD~~~~pd-------~L~~lv~~~~~ 207 (569)
++.++..++..|-+.|+-.+..... .+++++. +|..++++ .+..+++...+
T Consensus 98 ~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 98 TIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred eEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 4666766777999999999988864 4566655 88877543 57888887655
No 193
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=44.66 E-value=1.3e+02 Score=30.09 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=55.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCC-----------Ch
Q psy7267 100 NEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR-----------GK 168 (569)
Q Consensus 100 NE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~-----------Gk 168 (569)
|-...+.-++.|+++.. +. .+.++|++|+-+++..+.++++...+. -.++++..+... .+
T Consensus 11 ~y~~~~~v~i~Sl~~~~-------~~-~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (246)
T cd00505 11 EYLRGAIVLMKSVLRHR-------TK-PLRFHVLTNPLSDTFKAALDNLRKLYN-FNYELIPVDILDSVDSEHLKRPIKI 81 (246)
T ss_pred chhHHHHHHHHHHHHhC-------CC-CeEEEEEEccccHHHHHHHHHHHhccC-ceEEEEeccccCcchhhhhcCcccc
Confidence 33444555566665531 11 678999999888888888887654321 345555533111 01
Q ss_pred H-HHHHHHHHhc-cCcEEEEEcCCCCCChhhHHHHHHH
Q psy7267 169 G-GAVTLGTKCA-RGSIILFADADGATKFADLEKLEDK 204 (569)
Q Consensus 169 a-~AlN~Gl~~A-~gd~Vv~lDaD~~~~pd~L~~lv~~ 204 (569)
. .++-...+.. ..|=|+++|+|..+- +.+.++.+.
T Consensus 82 ~~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 82 VTLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred ceeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhc
Confidence 1 1122222222 378899999999876 557777654
No 194
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=44.04 E-value=70 Score=33.83 Aligned_cols=99 Identities=19% Similarity=0.099 Sum_probs=58.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCC-----CeEEEEEc-------
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGE-----DIVRGLKL------- 162 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~-----~~V~vi~~------- 162 (569)
++|+-+....|...|+++.+. . --||+||-.-..+...+.+.+ .+.. ..++++..
T Consensus 23 llpv~g~~pli~~~l~~l~~~----g------i~~i~iv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 89 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCINS----G------IRRIGVLTQYKSHSLNRHIQR---GWDFDGFIDGFVTLLPAQQRESGT 89 (361)
T ss_pred cceecceeeEeeehhhhhhhc----C------CceEEEEeccChHHHHHHHHh---ccCccCccCCCEEEeCCcccCCCC
Confidence 566666545667777777664 0 237777766544444443332 1110 12444321
Q ss_pred CCCCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 163 LKNRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 163 ~~n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+...|-+.|+..++.... .|.++++.+|...+. .+.++++.+.+
T Consensus 90 ~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~-~l~~~l~~~~~ 136 (361)
T TIGR02091 90 DWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKM-DYEKMLDYHIE 136 (361)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHH
Confidence 112688899988888764 578999999986654 47777776654
No 195
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=42.96 E-value=2e+02 Score=30.11 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHH---Hh------------Hh----hC-C
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQ---YT------------EK----CG-E 154 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~---~~------------~~----~~-~ 154 (569)
++|+-+. ..|..+|+++.+. . --+|+|+-+-..+...+.+.. +. .+ .+ .
T Consensus 33 l~pv~g~-pii~~~l~~l~~~----g------i~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~ 101 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAA----G------ITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPH 101 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHC----C------CCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccC
Confidence 6777666 6677777776664 1 236777655443333333321 00 00 00 1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCCCC-------hhhHHHHHHHHHh
Q psy7267 155 DIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATK-------FADLEKLEDKLKE 207 (569)
Q Consensus 155 ~~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~-------pd~L~~lv~~~~~ 207 (569)
..+.........|-+.|+..+......+-++++.+|..++ ...+..+++...+
T Consensus 102 ~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~ 161 (302)
T PRK13389 102 VTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDE 161 (302)
T ss_pred ceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHh
Confidence 1333444345578999988887776545567777888764 3678888887755
No 196
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=42.14 E-value=5.6e+02 Score=28.97 Aligned_cols=94 Identities=12% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCC-CeEEEEEcCCCC
Q psy7267 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGE-DIVRGLKLLKNR 166 (569)
Q Consensus 88 ~~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~-~~V~vi~~~~n~ 166 (569)
...++.|++=+|-.+ .++.+++.+.... ..++++|--+. ++-.+.+++..++.+. .++++.. -+|+
T Consensus 263 ~~~kiav~lHv~Y~D-----Ll~E~l~~l~~~p-----~~~Dl~ITt~~--~~~~~~i~~~l~~~~~~~~~~v~v-v~Nr 329 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-----LLEEILDYLANIP-----FPYDLFITTDS--EEKKEEIEEILAKRPGFKNAEVRV-VENR 329 (498)
T ss_pred CCCcEEEEEEEEcHh-----hHHHHHHHHHhCC-----CCeEEEEECCc--hhhHHHHHHHHHhccCCCceEEEE-eCCC
Confidence 457899999999876 4555555555432 26788886442 2224455554433322 3455554 3677
Q ss_pred ChH-HHHH----HHHHhccCcEEEEEcCCCCCC
Q psy7267 167 GKG-GAVT----LGTKCARGSIILFADADGATK 194 (569)
Q Consensus 167 Gka-~AlN----~Gl~~A~gd~Vv~lDaD~~~~ 194 (569)
|.- .++- ..+...++|+|+.+..--...
T Consensus 330 GRDi~pfLv~~~~~l~~~~YD~v~~~HtKKS~~ 362 (498)
T PF05045_consen 330 GRDILPFLVGLKDELLDSKYDYVCHLHTKKSPH 362 (498)
T ss_pred CccHHHHHHHHHHHhccCCccEEEEEEcccCcC
Confidence 732 2232 233235789999988755444
No 197
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=41.19 E-value=1.7e+02 Score=28.83 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=55.7
Q ss_pred ecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC----------ccHHHHHHHH----hHhhCCCeEEEEEcC
Q psy7267 98 AYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGST----------DKTMQVVHQY----TEKCGEDIVRGLKLL 163 (569)
Q Consensus 98 ~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgSt----------D~T~eil~~~----~~~~~~~~V~vi~~~ 163 (569)
.=+.|.++++.|+.+-+.--....+.|. ++||++-+|... |...+..+++ ..-.| .+.++.++
T Consensus 78 ~I~dEtYlp~LL~kLW~kyGr~~V~QP~-Rf~I~i~~~~~~~~~i~dlvV~Dp~~~l~~~v~da~~RI~P-EGFRVr~~- 154 (188)
T PF09886_consen 78 KIEDETYLPDLLKKLWEKYGRENVDQPD-RFEIIIDSDIDEAKDIEDLVVYDPSEDLKKKVYDAMFRIAP-EGFRVRRH- 154 (188)
T ss_pred EEcccchHHHHHHHHHHHhCccccCCCC-ceEEEecCCcccccchhhcEEECcHHHHHHHHHHHHHHhCC-CccEEeec-
Confidence 3345568888888886543333334453 889887666543 2222222211 11112 22333221
Q ss_pred CCCChHHHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 164 KNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 164 ~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
...++-++++-++..+.++|+++..+.++..
T Consensus 155 --------------~~~~~~f~~vASE~~i~~ewi~~a~e~~~el 185 (188)
T PF09886_consen 155 --------------YYEGNSFAFVASEETIKDEWIEEAKEMIEEL 185 (188)
T ss_pred --------------cccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2457899999999999999999888877664
No 198
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=40.61 E-value=1.5e+02 Score=29.39 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=46.9
Q ss_pred CceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC--------CC----hHHHHHHHHHhc-cCcEEEEEcCCCC
Q psy7267 126 FKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN--------RG----KGGAVTLGTKCA-RGSIILFADADGA 192 (569)
Q Consensus 126 ~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n--------~G----ka~AlN~Gl~~A-~gd~Vv~lDaD~~ 192 (569)
.++.|+|+.++-++...+.++++.... ...++++..+.. .. ...++-...+.- ..|-++++|+|..
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~l 107 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADII 107 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEE
Confidence 368899999988888899888876542 245666554311 01 112222222223 3789999999987
Q ss_pred CChhhHHHHHH
Q psy7267 193 TKFADLEKLED 203 (569)
Q Consensus 193 ~~pd~L~~lv~ 203 (569)
+-. .+..+.+
T Consensus 108 v~~-di~~L~~ 117 (248)
T cd04194 108 VLG-DLSELFD 117 (248)
T ss_pred ecC-CHHHHhc
Confidence 653 4555554
No 199
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=40.17 E-value=2.1e+02 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=35.6
Q ss_pred EEEEEcC-CCCChHHHHHHHHHhc---cCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 157 VRGLKLL-KNRGKGGAVTLGTKCA---RGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 157 V~vi~~~-~n~Gka~AlN~Gl~~A---~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
++++... +..|...++-.|++.+ +.|+++++=+|.- ++++.++++++...+
T Consensus 47 ~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 47 APVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4455422 2345666666667654 5799999999985 588999999887654
No 200
>PF06033 DUF918: Nucleopolyhedrovirus protein of unknown function (DUF918); InterPro: IPR009264 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf57; it is a family of uncharacterised viral proteins.
Probab=40.14 E-value=13 Score=34.96 Aligned_cols=29 Identities=38% Similarity=0.660 Sum_probs=25.1
Q ss_pred ccccccccceEEEEeceeeeeechhhccc
Q psy7267 495 SKTGLLNKNLIIFWNLKCVFFCGYKLLSQ 523 (569)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (569)
+..|+-|...|||-|.|+.|||.+|+.+.
T Consensus 18 ~~d~~~n~eYIIFLNVkrAfy~NF~v~~D 46 (153)
T PF06033_consen 18 SEDGLNNEEYIIFLNVKRAFYKNFKVTCD 46 (153)
T ss_pred cccCCCCccEEEEEEhhhhhhcceeEEEe
Confidence 45788899999999999999999997553
No 201
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=39.25 E-value=1.8e+02 Score=31.31 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=38.8
Q ss_pred eEEEEEcCC-CCChHHHHHHHHHhccCcEEEEEcCCCC-CChhhHHHHHHHH
Q psy7267 156 IVRGLKLLK-NRGKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLEDKL 205 (569)
Q Consensus 156 ~V~vi~~~~-n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~ 205 (569)
+++++.... ..|...++..|++++..+.++++=+|.. ++++.++++++..
T Consensus 233 ~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 233 GIPLITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred CCcEEeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 456665432 4677788999999888889999999985 5888998888764
No 202
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=39.03 E-value=2.1e+02 Score=31.89 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=53.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTL 174 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~ 174 (569)
++|.-+....|..+++.+.+.. .-+++||-+. .+ ...+++....++.+...++..+..+|-+.|+-.
T Consensus 26 ~l~l~g~~~ll~~tl~~l~~~~----------~~~iviv~~~-~~--~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~ 92 (468)
T TIGR01479 26 FLALVGDLTMLQQTLKRLAGLP----------CSSPLVICNE-EH--RFIVAEQLREIGKLASNIILEPVGRNTAPAIAL 92 (468)
T ss_pred eeEcCCCCcHHHHHHHHHhcCC----------CcCcEEecCH-HH--HHHHHHHHHHcCCCcceEEecccccCchHHHHH
Confidence 4566566566777777665530 2256665432 11 122222222221122345555666777766655
Q ss_pred HHHhc-----cCcEEEEEcCCCCC-ChhhHHHHHHHH
Q psy7267 175 GTKCA-----RGSIILFADADGAT-KFADLEKLEDKL 205 (569)
Q Consensus 175 Gl~~A-----~gd~Vv~lDaD~~~-~pd~L~~lv~~~ 205 (569)
+.... ..++++++-+|..+ +++.+.++++..
T Consensus 93 aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 93 AALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 54433 24689999999665 446677777654
No 203
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=38.78 E-value=3e+02 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHhccCcEEEEEcCCCC-CChhhHHHHH
Q psy7267 165 NRGKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLE 202 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv 202 (569)
..|.-.++..+++..+.|+++++=+|.. ++++.++++.
T Consensus 75 ~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 75 LFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHHH
Confidence 3566677888888788899999999995 4888888883
No 204
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=37.75 E-value=6.2 Score=33.73 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=27.1
Q ss_pred eeecceeeccccceeeccccccCCCcceeeeeecccCcce
Q psy7267 426 VHCSSVVCRPMNAVTFGRTVSESSPGIGTIHKFGVSGKSL 465 (569)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (569)
.+|...-..|.|+-+||+-+-.--|+++| -..|+-|+|-
T Consensus 35 ~~C~~~~~~pln~AsFGKlir~vFP~l~~-RRLG~RG~Sk 73 (85)
T PF02257_consen 35 SFCEKNGIKPLNAASFGKLIRQVFPNLKT-RRLGTRGQSK 73 (85)
T ss_dssp HHHHHTT-----HHHHHHHHHHHSTT-EE-EEESSTT--E
T ss_pred HHHHHhCCCCCchHHHHHHHHHHcCCCcc-cccccCCCcc
Confidence 47888888999999999999999999975 6889999885
No 205
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=37.39 E-value=1.3e+02 Score=32.50 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred CccEEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEE--------
Q psy7267 89 SVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGL-------- 160 (569)
Q Consensus 89 ~p~VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi-------- 160 (569)
.+.+.|||=++|..+.+...|+||.+. ... .+.-+|+--|.-.++..++++.. ++ -+|.-|
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~-~~I------~~~llifSHd~~~~ein~~v~~I--~F--c~v~QIf~P~S~ql 98 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQA-RGI------EEALLIFSHDFYSEEINDLVQSI--DF--CRVMQIFYPYSIQL 98 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHh-hCc------cceEEEEeccCChHHHHHHHHhC--Cc--ceeEEEecccchhh
Confidence 356899999999999999999998775 211 14456666677777777777653 11 111111
Q ss_pred -----------EcCCCCChHHHHHHHHHhcc-------------------------------------CcEEEEEcCCCC
Q psy7267 161 -----------KLLKNRGKGGAVTLGTKCAR-------------------------------------GSIILFADADGA 192 (569)
Q Consensus 161 -----------~~~~n~Gka~AlN~Gl~~A~-------------------------------------gd~Vv~lDaD~~ 192 (569)
..+++..|..|+..+-..|. .-+|+|+.-|-.
T Consensus 99 ~p~~FPG~dP~DCpr~i~k~~a~~~~C~na~~pD~yGhyRea~~tq~KHHWWWk~n~Vf~~l~~~~~~~g~v~fLEEDhy 178 (356)
T PF05060_consen 99 YPNEFPGQDPNDCPRDIKKEDALKLGCNNAEYPDSYGHYREAKFTQIKHHWWWKLNFVFDGLEETRNHNGWVLFLEEDHY 178 (356)
T ss_pred CCCCCCCCCcccccccccHhHHHhccCCCCCCccccCCcccccchhhhHHHHHHHHHHHHhhhhhccCCceEEEEecccc
Confidence 11233456666555542221 247999999999
Q ss_pred CChhhHHHHHHHHH
Q psy7267 193 TKFADLEKLEDKLK 206 (569)
Q Consensus 193 ~~pd~L~~lv~~~~ 206 (569)
+.||++.-+....+
T Consensus 179 v~pD~l~~l~~~~~ 192 (356)
T PF05060_consen 179 VAPDFLHVLRLMIK 192 (356)
T ss_pred cchhHHHHHHHHHH
Confidence 99999876555443
No 206
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=36.41 E-value=2.4e+02 Score=28.24 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=54.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhc
Q psy7267 100 NEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCA 179 (569)
Q Consensus 100 NE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A 179 (569)
+....|..+|+.+.+. |. --+|+||-.... .+.++++..+ ..++++.- ..-.......|++..
T Consensus 26 ~Gkpvl~~tl~~f~~~--------~~-i~~Ivvv~~~~~---~~~~~~~~~~---~~v~iv~G--G~tR~~SV~ngL~~l 88 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLAS--------PE-IDEIVVVVPPED---IDYVEELLSK---KKVKIVEG--GATRQESVYNGLKAL 88 (221)
T ss_dssp TTEEHHHHHHHHHHTT--------TT-ESEEEEEESGGG---HHHHHHHHHH---TTEEEEE----SSHHHHHHHHHHCH
T ss_pred CCeEeHHHHHHHHhcC--------CC-CCeEEEEecchh---HHHHHHhhcC---CCEEEecC--ChhHHHHHHHHHHHH
Confidence 3445566666666542 11 347777754332 2333443333 35777762 223556677777775
Q ss_pred cC--cEEEEEcCCC-CCChhhHHHHHHHHHh
Q psy7267 180 RG--SIILFADADG-ATKFADLEKLEDKLKE 207 (569)
Q Consensus 180 ~g--d~Vv~lDaD~-~~~pd~L~~lv~~~~~ 207 (569)
.. |+|++=|+=- .++++.+.++++.+.+
T Consensus 89 ~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 89 AEDCDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp HCTSSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred HcCCCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 43 6999999875 5688999999999987
No 207
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=36.06 E-value=1.6e+02 Score=31.85 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=48.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC--CCChHHHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK--NRGKGGAV 172 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~--n~Gka~Al 172 (569)
++|+-+ ...|...++.+.+. .-+|+|+-. ..+ .++.+.+.+.+ .+++++..++ ..|.+.|+
T Consensus 24 Llpi~g-kPli~~~i~~l~~~-----------~~~i~Ivv~-~~~--~~i~~~~~~~~--~~v~~~~~~~~~~~gt~~al 86 (430)
T PRK14359 24 LHTICG-KPMLFYILKEAFAI-----------SDDVHVVLH-HQK--ERIKEAVLEYF--PGVIFHTQDLENYPGTGGAL 86 (430)
T ss_pred eCEECC-ccHHHHHHHHHHHc-----------CCcEEEEEC-CCH--HHHHHHHHhcC--CceEEEEecCccCCCcHHHH
Confidence 456654 44566666666553 114444433 222 12222222222 3566765432 25777777
Q ss_pred HHHHHhccCcEEEEEcCCC-CCChhhHHHHH
Q psy7267 173 TLGTKCARGSIILFADADG-ATKFADLEKLE 202 (569)
Q Consensus 173 N~Gl~~A~gd~Vv~lDaD~-~~~pd~L~~lv 202 (569)
... ....|.++++++|. ...++.++++.
T Consensus 87 ~~~--~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 87 MGI--EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred hhc--ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 552 22468999999998 45677776654
No 208
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=35.76 E-value=1.5e+02 Score=24.59 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=44.9
Q ss_pred ceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCC
Q psy7267 127 KYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGA 192 (569)
Q Consensus 127 ~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~ 192 (569)
..++.++-..|.|+ |++....+.+ .+..++-..++|-+.|+...++..+..+-+.+-+|..
T Consensus 9 ~~~~~~lvS~s~DG--e~ia~~~~~~---G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDGP 69 (74)
T PF04028_consen 9 RRKIAALVSRSRDG--ELIARVLERF---GFRTIRGSSSRGGARALREMLRALKEGYSIAITPDGP 69 (74)
T ss_pred CCCEEEEEccCcCH--HHHHHHHHHc---CCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 45777777888887 4555555553 6788888899999999999999987555555556653
No 209
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=35.12 E-value=1.3e+02 Score=31.92 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 170 GAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 170 ~AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
.+-..|+++|+.+|++=+=+|..+..+.+-++.+.+.+
T Consensus 85 ~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 85 VSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HHHHHHHHHhCCceEEEEcccccccchHHHHHHHHhcc
Confidence 45567999999999999999998877666666555544
No 210
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=34.70 E-value=4.1e+02 Score=26.90 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcC-----CC--CCh--HHHH
Q psy7267 102 QDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL-----KN--RGK--GGAV 172 (569)
Q Consensus 102 ~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~-----~n--~Gk--a~Al 172 (569)
...+..++.|++... ...+.+.|++|+-+++..+.++++..+++ ..++++... .. ... ..+.
T Consensus 13 ~~~~~v~l~Sll~nn--------~~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~~y 83 (248)
T cd06432 13 ERFLRIMMLSVMKNT--------KSPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIWGY 83 (248)
T ss_pred HHHHHHHHHHHHHcC--------CCCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHHHH
Confidence 344555666666531 13789999999999999999999887763 345544432 01 111 1111
Q ss_pred H-HHHH-hc--cCcEEEEEcCCCCCChhhHHHHHHH
Q psy7267 173 T-LGTK-CA--RGSIILFADADGATKFADLEKLEDK 204 (569)
Q Consensus 173 N-~Gl~-~A--~gd~Vv~lDaD~~~~pd~L~~lv~~ 204 (569)
. ..+. .- .-|=|+.+|+|..+. +.|.+|.+.
T Consensus 84 ~rL~~~~lLP~~vdkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 84 KILFLDVLFPLNVDKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred HHHHHHHhhhhccCEEEEEcCCceec-ccHHHHHhc
Confidence 1 1122 11 358999999999775 667777654
No 211
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=33.93 E-value=2.1e+02 Score=31.35 Aligned_cols=99 Identities=16% Similarity=0.090 Sum_probs=59.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC------CCeEEEEEc------
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG------EDIVRGLKL------ 162 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~------~~~V~vi~~------ 162 (569)
++|+-+....|...|+++.+. . --||+|+-....+...+.+.+ .+. ...+.++..
T Consensus 40 llpv~gkp~lI~~~l~~l~~~----G------i~~i~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~ 106 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCINS----G------IRRIGVLTQYKAHSLIRHIQR---GWSFFREELGEFVDLLPAQQRVDE 106 (425)
T ss_pred eEEECCEEEEhHHHHHHHHHC----C------CCeEEEEecCCHHHHHHHHHh---hhcccccCCCCeEEEeCCcccCCC
Confidence 678877655677777776663 1 237777766544433333322 110 011222211
Q ss_pred -CCCCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 163 -LKNRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 163 -~~n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+...|-+.|+..+..... .|.++++.+|...+ ..+.++++...+
T Consensus 107 e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~ 154 (425)
T PRK00725 107 ENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVE 154 (425)
T ss_pred CccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHH
Confidence 113688999988887764 47899999998654 458888877665
No 212
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=33.11 E-value=3.3e+02 Score=26.88 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=51.9
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC--CCC--
Q psy7267 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK--NRG-- 167 (569)
Q Consensus 92 VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~--n~G-- 167 (569)
|+-+|-+|+.. .+.++.+++.+.. | ...=+|-||-.+++...+.++++.... ++++++.... ..|
T Consensus 1 iAylil~h~~~---~~~~~~l~~~l~~-----~-~~~f~iHiD~k~~~~~~~~~~~~~~~~--~nv~~v~~r~~v~WG~~ 69 (244)
T PF02485_consen 1 IAYLILAHKND---PEQLERLLRLLYH-----P-DNDFYIHIDKKSPDYFYEEIKKLISCF--PNVHFVPKRVDVRWGGF 69 (244)
T ss_dssp EEEEEEESS-----HHHHHHHHHHH-------T-TSEEEEEE-TTS-HHHHHHHHHHHCT---TTEEE-SS-----TTSH
T ss_pred CEEEEEecCCC---HHHHHHHHHHhcC-----C-CCEEEEEEcCCCChHHHHHHHHhcccC--CceeecccccccccCCc
Confidence 35577787633 3445555665442 1 133345577777777777777766666 6777775222 233
Q ss_pred -hHHHH----HHHHH-hccCcEEEEEcCCCCCChhhHHHHHHHHHhc
Q psy7267 168 -KGGAV----TLGTK-CARGSIILFADADGATKFADLEKLEDKLKEL 208 (569)
Q Consensus 168 -ka~Al----N~Gl~-~A~gd~Vv~lDaD~~~~pd~L~~lv~~~~~~ 208 (569)
...|. ..+++ ..+.||++++.+++.+ -...+++.+.++.+
T Consensus 70 S~v~A~l~ll~~al~~~~~~~y~~llSg~D~P-l~s~~~i~~~l~~~ 115 (244)
T PF02485_consen 70 SLVEATLNLLREALKRDGDWDYFILLSGQDYP-LKSNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHHHHHHH-S---EEEEEETTEEE-SS-HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEccccccc-ccchHHHHHHHHhc
Confidence 33343 44444 2366888888888743 23344555566553
No 213
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=30.64 E-value=65 Score=31.35 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=42.0
Q ss_pred CceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC--------------C--ChHHHHHHHHHh-ccCcEEEEEc
Q psy7267 126 FKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN--------------R--GKGGAVTLGTKC-ARGSIILFAD 188 (569)
Q Consensus 126 ~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n--------------~--Gka~AlN~Gl~~-A~gd~Vv~lD 188 (569)
..+.|++++|+.+++..+.+++...+. ..+..+....+ . ....+.-...+. ...|-|+++|
T Consensus 29 ~~~~i~i~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD 106 (250)
T PF01501_consen 29 SNLHIYIITDDISEEDFEKLRALAAEV--IEIEPIEFPDISMLEEFQFNSPSKRHFSPATFARLFIPDLLPDYDRILYLD 106 (250)
T ss_dssp SSEEEEEEESSS-HHHHHHHHHHSCCC--CTTECEEETSGGHHH--TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-
T ss_pred ccceEEEecCCCCHHHHHHHhhhcccc--cceeeeccchHHhhhhhhhcccccccccHHHHHHhhhHHHHhhcCeEEEEc
Confidence 467899999988888888877765543 12222221110 1 112223334444 5779999999
Q ss_pred CCCCCChhhHHHHHH
Q psy7267 189 ADGATKFADLEKLED 203 (569)
Q Consensus 189 aD~~~~pd~L~~lv~ 203 (569)
+|..+- +.+..+.+
T Consensus 107 ~D~lv~-~dl~~lf~ 120 (250)
T PF01501_consen 107 ADTLVL-GDLDELFD 120 (250)
T ss_dssp TTEEES-S-SHHHHC
T ss_pred CCeeee-cChhhhhc
Confidence 999874 34555544
No 214
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=30.62 E-value=2e+02 Score=31.61 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=59.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhC--CCe-EEEEEcCC-------
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG--EDI-VRGLKLLK------- 164 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~--~~~-V~vi~~~~------- 164 (569)
++|+-|....|...|+.+.+. . --+|+|+-....+...+.+.+-. ... ... +.++...+
T Consensus 28 Llpi~gk~plI~~~L~~l~~~----G------i~~vivv~~~~~~~i~~~l~~~~-~~~~~~~g~~~i~~~~~~~~~~~~ 96 (429)
T PRK02862 28 AVPLAGKYRLIDIPISNCINS----G------INKIYVLTQFNSASLNRHISQTY-NFDGFSGGFVEVLAAQQTPENPSW 96 (429)
T ss_pred eeEECCeeEEeHHHHHHHHHC----C------CCEEEEEecCCHHHHHHHHhcCc-CccccCCCEEEEeCCcccCCCCcc
Confidence 778877756777777776663 1 23677776643443344433210 000 011 22222111
Q ss_pred CCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 165 NRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 165 n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
..|-+.|+..+.+... .+.++++.+|...+ ..+..+++.+.+
T Consensus 97 ~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~ 141 (429)
T PRK02862 97 FQGTADAVRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRE 141 (429)
T ss_pred ccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHH
Confidence 1688999998887764 36889999998654 567888877655
No 215
>PF15486 DUF4644: Domain of unknown function (DUF4644)
Probab=30.11 E-value=32 Score=32.01 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=31.7
Q ss_pred ecCCCCCCCCceeecceeeccccceeeccccccCCC
Q psy7267 415 YFPQMPLRPGEVHCSSVVCRPMNAVTFGRTVSESSP 450 (569)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (569)
-+||-.|.||..|||...--+.-.-..|.|.|.||-
T Consensus 89 ~lPqg~l~pgns~~sa~lea~lprdslgntassss~ 124 (161)
T PF15486_consen 89 DLPQGTLGPGNSHCSALLEAQLPRDSLGNTASSSSM 124 (161)
T ss_pred cCCccccCCCCccchhcccccCCccccCcccccccc
Confidence 489999999999999988888888889999887763
No 216
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=30.08 E-value=1.8e+02 Score=31.49 Aligned_cols=99 Identities=13% Similarity=0.061 Sum_probs=59.0
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCC--CeEEEEEc-C--C-----
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGE--DIVRGLKL-L--K----- 164 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~--~~V~vi~~-~--~----- 164 (569)
++|+-|....|...|+++.++ . --||+++-....+...+.+.+ .+.. ..+.++.. + +
T Consensus 30 llPv~gk~plI~~~L~~l~~~----G------i~~i~iv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 96 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVNS----G------YLRIYVLTQYKSHSLDRHISQ---TWRLSGLLGNYITPVPAQQRLGKR 96 (407)
T ss_pred ceeeCCcceEhHHHHHHHHHC----C------CCEEEEEeccCHHHHHHHHHh---CcCccccCCCeEEECCcccCCCCC
Confidence 677777656676677666653 1 237877766554444444431 1100 11222221 1 1
Q ss_pred -CCChHHHHHHHHHhcc---CcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 165 -NRGKGGAVTLGTKCAR---GSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 165 -n~Gka~AlN~Gl~~A~---gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
..|-+.|+..+..... .|+++++.+|...+ ..+.++++...+
T Consensus 97 ~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~ 142 (407)
T PRK00844 97 WYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIE 142 (407)
T ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHh
Confidence 3788999988887763 26899999998654 457777776655
No 217
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=28.65 E-value=2.4e+02 Score=29.48 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCCCC--hhhHHHHHHHHHhc
Q psy7267 155 DIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATK--FADLEKLEDKLKEL 208 (569)
Q Consensus 155 ~~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~~~--pd~L~~lv~~~~~~ 208 (569)
.++.+++.++..|.+.|.-.|=.....|-++++=+|+.+. +..+.+|++.+++-
T Consensus 97 ~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 97 VTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred ceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 5778888888899999999999998888666666676654 57899999988874
No 218
>PHA01631 hypothetical protein
Probab=27.66 E-value=62 Score=31.12 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=40.0
Q ss_pred ceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCC-----CCChHHHHHHHHHh---ccCcEEEEEcCCCCCChh
Q psy7267 127 KYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK-----NRGKGGAVTLGTKC---ARGSIILFADADGATKFA 196 (569)
Q Consensus 127 ~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~-----n~Gka~AlN~Gl~~---A~gd~Vv~lDaD~~~~pd 196 (569)
+++.++|||.=.|-|.-.++.. ...++.... +...|..+...++. ..-|+++++|+|..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~~~-------~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIPKY-------QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccccc-------CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 5678999997777554433332 122333332 34467777777554 567899999999987653
No 219
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=26.70 E-value=1.5e+02 Score=31.37 Aligned_cols=101 Identities=7% Similarity=0.010 Sum_probs=53.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCc-cHHHHHHHHhHhhCCC-----e-EEEEEcCCCC-
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTD-KTMQVVHQYTEKCGED-----I-VRGLKLLKNR- 166 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD-~T~eil~~~~~~~~~~-----~-V~vi~~~~n~- 166 (569)
++|+-|....|+..|+.+.++ . --||+++-..-.+ .-.+.+.+- .++... . +.+...++..
T Consensus 27 LlpV~gk~PlIe~~l~~L~~~----G------i~~I~iv~~~~~~~~I~~~l~~~-~~~~~~~~~~~~~~~~~~e~~~l~ 95 (369)
T TIGR02092 27 SLPFGGRYRLIDFPLSNMVNA----G------IRNVFIFFKNKERQSLFDHLGSG-REWDLHRKRDGLFVFPYNDRDDLS 95 (369)
T ss_pred ccccCCeeeEEEEEhhhhhcc----C------CCEEEEEeCCCcHHHHHHHHhCC-CCCCcccccCcEEEEeccCCCCcc
Confidence 677777646677777777664 1 2377777664333 323333210 011100 0 1222222222
Q ss_pred -ChHHHHHHHHHhc---cCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 167 -GKGGAVTLGTKCA---RGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 167 -Gka~AlN~Gl~~A---~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
|-+.|+..+.+.. ..|.++++.+|...+ -.+.++++...+
T Consensus 96 tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~-~dl~~ll~~h~~ 139 (369)
T TIGR02092 96 EGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCN-IDLKAVLKYHEE 139 (369)
T ss_pred cChHHHHHHHHHHHHhCCCCEEEEECCCEEEe-cCHHHHHHHHHH
Confidence 4455666666554 247899999998655 457777776654
No 220
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=26.41 E-value=4.1e+02 Score=27.02 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=60.4
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHH
Q psy7267 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173 (569)
Q Consensus 94 VIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN 173 (569)
++.|.-.+ ..|..+|+.+..+-. .-+|+|. -|++++-..++++..+ .++.+++-. .-..-.-.-
T Consensus 21 vLlpL~~~-pmI~~~lervrks~~---------~d~ivvA--TS~~~~d~~l~~~~~~---~G~~vfrGs-~~dVL~Rf~ 84 (241)
T COG1861 21 VLLPLGGE-PMIEYQLERVRKSKD---------LDKIVVA--TSDKEEDDALEEVCRS---HGFYVFRGS-EEDVLQRFI 84 (241)
T ss_pred hhhhcCCC-chHHHHHHHHhcccc---------ccceEEE--ecCCcchhHHHHHHHH---cCeeEecCC-HHHHHHHHH
Confidence 34454444 457777877776511 2355554 2445555566666555 357777622 111222334
Q ss_pred HHHHhccCcEEEEEcCCCC-CChhhHHHHHHHHHh
Q psy7267 174 LGTKCARGSIILFADADGA-TKFADLEKLEDKLKE 207 (569)
Q Consensus 174 ~Gl~~A~gd~Vv~lDaD~~-~~pd~L~~lv~~~~~ 207 (569)
.++++-+++.|+-+-+|+. ++|+.+..++..+.+
T Consensus 85 ~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~ 119 (241)
T COG1861 85 IAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLE 119 (241)
T ss_pred HHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHh
Confidence 4555667899999999996 589999999888776
No 221
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=25.99 E-value=8e+02 Score=25.93 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=57.4
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCC-CCccHHHHHHHHhHhhCC-C--eEEEEEcCCCC-
Q psy7267 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDG-STDKTMQVVHQYTEKCGE-D--IVRGLKLLKNR- 166 (569)
Q Consensus 92 VSVIIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDg-StD~T~eil~~~~~~~~~-~--~V~vi~~~~n~- 166 (569)
++||..-.+ +++++-++.+.+... ..++.+.|+.|. ..|...+.++++...+.. - .+..+..+...
T Consensus 3 ~~vv~~g~~----~~~~~~~lkSil~~n-----~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~ 73 (304)
T cd06430 3 LAVVACGER----LEETLTMLKSAIVFS-----QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNA 73 (304)
T ss_pred EEEEEcCCc----HHHHHHHHHHHHHhC-----CCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccch
Confidence 556665555 344444444433321 227788887776 677777778888544310 1 23333333221
Q ss_pred -C--h----HHHHHHHHH-hc-cCcEEEEEcCCCCCChhhHHHHHHHHHh
Q psy7267 167 -G--K----GGAVTLGTK-CA-RGSIILFADADGATKFADLEKLEDKLKE 207 (569)
Q Consensus 167 -G--k----a~AlN~Gl~-~A-~gd~Vv~lDaD~~~~pd~L~~lv~~~~~ 207 (569)
+ + +.....-+. .- +-|-|+.+|+|..+. +.|+++.+.+.+
T Consensus 74 ~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~-~dI~eL~~~~~d 122 (304)
T cd06430 74 AEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFL-RPVEEIWSFLKK 122 (304)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeec-CCHHHHHHHHhh
Confidence 1 1 111111111 11 458999999998775 558888887655
No 222
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=25.62 E-value=1.9e+02 Score=28.16 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=33.8
Q ss_pred EEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHh-c-cCcEEEEEcCCCCCChhhHHHHHHH
Q psy7267 129 EIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKC-A-RGSIILFADADGATKFADLEKLEDK 204 (569)
Q Consensus 129 EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~-A-~gd~Vv~lDaD~~~~pd~L~~lv~~ 204 (569)
|||||+. .|+|..+-+.+ .+.++. ....+.....-.-++. + +-.+|+|+|+|.. -+.|++.+..
T Consensus 4 evIVVEG--K~D~~~lk~~~-------d~~~I~-T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~--GekIRk~i~~ 69 (174)
T TIGR00334 4 EIIVVEG--KDDQARIKQAF-------DVDVIE-TNGSALKDETINLIKKAQKKQGVIILTDPDFP--GEKIRKKIEQ 69 (174)
T ss_pred eEEEEec--chHHHHHHHhc-------CceEEE-ECCCccCHHHHHHHHHHhhcCCEEEEeCCCCc--hHHHHHHHHH
Confidence 7888865 44455553332 244554 2223322232223333 3 4689999999963 4455555544
No 223
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.96 E-value=2.3e+02 Score=23.27 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=36.2
Q ss_pred cCC-CCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCCChHHHHHHHHHhccCcEEEEEcCCCC
Q psy7267 122 KIP-TFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGA 192 (569)
Q Consensus 122 ~yp-~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~Gka~AlN~Gl~~A~gd~Vv~lDaD~~ 192 (569)
.|+ ..+++++.|.- |++.+..+++.++...+...+.. ..+....+...+....-..++++|.|..
T Consensus 29 ~~~~~~~v~~v~Vs~---d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 29 KYKKKDDVEFVFVSL---DEDEEEWKKFLKKNNFPWYNVPF---DDDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHTTTTTEEEEEEE----SSSHHHHHHHHHTCTTSSEEEET---TTHHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred HhCCCCCEEEEEEEe---CCCHHHHHHHHHhcCCCceEEee---CcchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 344 45899999865 34444445554443212333322 2233445555555566799999999864
No 224
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=24.10 E-value=1.7e+02 Score=23.89 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=36.5
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCC
Q psy7267 99 YNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKN 165 (569)
Q Consensus 99 yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n 165 (569)
|+..+.|.+.|+.+.++ +| ++++|-.|+..+.-.++++++++. ++.++..+.+
T Consensus 14 ~~D~~~i~~~Ld~~~~~-------~~----~~~lvhGga~~GaD~iA~~wA~~~---gv~~~~~~ad 66 (71)
T PF10686_consen 14 WTDHELIWAALDKVHAR-------HP----DMVLVHGGAPKGADRIAARWARER---GVPVIRFPAD 66 (71)
T ss_pred cccHHHHHHHHHHHHHh-------CC----CEEEEECCCCCCHHHHHHHHHHHC---CCeeEEeCcC
Confidence 56666666667666663 33 567888888788888888888774 5666665554
No 225
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=24.06 E-value=2.6e+02 Score=24.53 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=22.3
Q ss_pred cCCCCceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEE
Q psy7267 122 KIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGL 160 (569)
Q Consensus 122 ~yp~~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi 160 (569)
+||..+ =|+|-|||-.| .++-.++++++| .+|..+
T Consensus 61 ~fP~~k-fiLIGDsgq~D--peiY~~ia~~~P-~~i~ai 95 (100)
T PF09949_consen 61 DFPERK-FILIGDSGQHD--PEIYAEIARRFP-GRILAI 95 (100)
T ss_pred HCCCCc-EEEEeeCCCcC--HHHHHHHHHHCC-CCEEEE
Confidence 577432 35566777677 677778888887 455433
No 226
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=23.02 E-value=2.4e+02 Score=29.84 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=42.7
Q ss_pred eecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCC--------------------CccHHHHHHHHhHhhCCCe
Q psy7267 97 PAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGS--------------------TDKTMQVVHQYTEKCGEDI 156 (569)
Q Consensus 97 P~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgS--------------------tD~T~eil~~~~~~~~~~~ 156 (569)
-+||+...+.+.++.+.+. +| |++|+-|-+ +|.|.+++.+.+-.+.+.+
T Consensus 95 ~A~~~~givqravr~ik~~-------~p----~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAG 163 (330)
T COG0113 95 EAYDPDGIVQRAVRAIKEA-------FP----ELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAG 163 (330)
T ss_pred cccCCCChHHHHHHHHHHh-------CC----CeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcC
Confidence 4789999888888887763 33 667664433 4555555554332222234
Q ss_pred EEEEEcCCC--CChHHHHHHHHHhccCcEEE
Q psy7267 157 VRGLKLLKN--RGKGGAVTLGTKCARGSIIL 185 (569)
Q Consensus 157 V~vi~~~~n--~Gka~AlN~Gl~~A~gd~Vv 185 (569)
..++. +.+ -|...|+..++..+...-+.
T Consensus 164 AdivA-PSdMMDGrV~aIR~aLd~ag~~~v~ 193 (330)
T COG0113 164 ADIVA-PSDMMDGRVGAIREALDEAGFIDVP 193 (330)
T ss_pred CCeec-ccccccchHHHHHHHHHHcCCCcce
Confidence 44444 322 25555666666555443333
No 227
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=22.94 E-value=2e+02 Score=28.09 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=54.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCccHHHHHHHHhHh--hCCCeEEEEE--cCCCCChHH
Q psy7267 95 IVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK--CGEDIVRGLK--LLKNRGKGG 170 (569)
Q Consensus 95 IIP~yNE~~~I~~~L~sll~~l~~~~~~yp~~~~EIIVVDDgStD~T~eil~~~~~~--~~~~~V~vi~--~~~n~Gka~ 170 (569)
++|+-|. ..|..+++.+.+. . --||+||-....+...+.+.+-... .....+.++. ..+..|-+.
T Consensus 25 llpv~g~-pli~~~l~~l~~~----g------i~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~ 93 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEKA----G------VEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDAL 93 (216)
T ss_pred cceECCE-EHHHHHHHHHHHC----C------CCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHH
Confidence 5677665 6666666666553 0 2267777654444333333321100 0012333333 345688888
Q ss_pred HHHHHHHhccCcEEEEEcCCCCCChhhHHHHHHH
Q psy7267 171 AVTLGTKCARGSIILFADADGATKFADLEKLEDK 204 (569)
Q Consensus 171 AlN~Gl~~A~gd~Vv~lDaD~~~~pd~L~~lv~~ 204 (569)
++..+......| ++++.+|...+.+ +..+++.
T Consensus 94 ~l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~~ 125 (216)
T cd02507 94 RLRDIRGLIRSD-FLLLSCDLVSNIP-LSELLEE 125 (216)
T ss_pred HHHHHhhcCCCC-EEEEeCCEeecCC-HHHHHHH
Confidence 888888777666 6679999876554 5666643
No 228
>PLN03181 glycosyltransferase; Provisional
Probab=22.41 E-value=1.1e+03 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHh-ccCcEEEEEcCCCCC-Chh
Q psy7267 167 GKGGAVTLGTKC-ARGSIILFADADGAT-KFA 196 (569)
Q Consensus 167 Gka~AlN~Gl~~-A~gd~Vv~lDaD~~~-~pd 196 (569)
.|..++..++.+ -+.+||..+|+|..+ +++
T Consensus 184 aKipalRaAM~a~PeAEWfWWLDsDALIMNp~ 215 (453)
T PLN03181 184 AKLPVVRAAMLAHPEAEWIWWVDSDAVFTDMD 215 (453)
T ss_pred hHHHHHHHHHHHCCCceEEEEecCCceeecCC
Confidence 477788877764 478999999999875 444
No 229
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=22.19 E-value=4.9e+02 Score=22.90 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred cEEEEEeecCCCCC-hHHHHHHHHHHHHhhhccCCC---CceEEEEEeCCCCccHHHHHHHHhHhhCCCeEEEEEcCCCC
Q psy7267 91 NLSVIVPAYNEQDR-LKPMLDETIEFLNERRKKIPT---FKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR 166 (569)
Q Consensus 91 ~VSVIIP~yNE~~~-I~~~L~sll~~l~~~~~~yp~---~~~EIIVVDDgStD~T~eil~~~~~~~~~~~V~vi~~~~n~ 166 (569)
++.||.-....-.. -...+..+.+... .+.. .+++++-|.-.+..++.+.++++.++++ .+..++..+...
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~----~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~~~~~~ 97 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALK----QLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLTGTPEE 97 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHH----HhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEECCHHH
Confidence 46666665555543 3333444333222 1211 1488888864444345666777776663 356666533211
Q ss_pred ChHHHHHHHHHhcc------------CcEEEEEcCCCCC
Q psy7267 167 GKGGAVTLGTKCAR------------GSIILFADADGAT 193 (569)
Q Consensus 167 Gka~AlN~Gl~~A~------------gd~Vv~lDaD~~~ 193 (569)
-...+...|+.... ...++++|.+..+
T Consensus 98 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i 136 (142)
T cd02968 98 IEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKL 136 (142)
T ss_pred HHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCE
Confidence 12223333433221 2357888888654
No 230
>TIGR03291 methan_mark_17 putative methanogenesis marker protein 17. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.61 E-value=6.2e+02 Score=24.88 Aligned_cols=27 Identities=4% Similarity=0.100 Sum_probs=22.5
Q ss_pred cCcEEEEEcCCCCCChhhHHHHHHHHH
Q psy7267 180 RGSIILFADADGATKFADLEKLEDKLK 206 (569)
Q Consensus 180 ~gd~Vv~lDaD~~~~pd~L~~lv~~~~ 206 (569)
.++-++++-++..+.++|++++.+.++
T Consensus 157 ~~~~fv~vASE~~l~~ewi~~a~~~~~ 183 (185)
T TIGR03291 157 EDNRFVFVASEETLEDEWIDEAFELID 183 (185)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999877665
Done!