RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7267
(569 letters)
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 321 bits (824), Expect = e-107
Identities = 119/230 (51%), Positives = 147/230 (63%), Gaps = 19/230 (8%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
V++PAYNE+ RL P L+E +E+L ER P+F YEIIVV DGS D T +V + K
Sbjct: 1 VVIPAYNEEKRLPPTLEEAVEYLEER----PSFSYEIIVVDDGSKDGTAEVARKLARKNP 56
Query: 154 EDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDY 213
I R L L KNRGKGGAV G ARG ILFADAD AT F +LEKLE+ LK Y
Sbjct: 57 ALI-RVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKT---SGY 112
Query: 214 IEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFK 273
+ +GSRAHL + A V+RS+ RN+L +GF+F+V I+DTQCGFK
Sbjct: 113 -----------DIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFK 161
Query: 274 LFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIEGSK 323
LFTR +A +LF +H++RWAFDVELL +A L P+ EV V W EI GSK
Sbjct: 162 LFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIPGSK 211
>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
Provisional.
Length = 333
Score = 322 bits (828), Expect = e-106
Identities = 144/345 (41%), Positives = 204/345 (59%), Gaps = 39/345 (11%)
Query: 24 PILTEFEIH-CYIALFLVCGI--LSYAYRSFKTKNPFPDIDFLSKGERVFLDVKTGQELE 80
I H I L LV G+ L Y Y S+ ++V VK+ E
Sbjct: 3 NIWKVIFKHRMLIVLGLVVGLALLFYPYISWPDD------------DKVIRQVKSSVIHE 50
Query: 81 FPSLDD----------EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEI 130
D + V+LS+++PAYNE+DRL ML ETI++L R +K P FKYEI
Sbjct: 51 KSKEVDKENYINNILKDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEI 110
Query: 131 IVVSDGSTDKTMQVVHQY-TEKCGEDI-VRGLKLLKNRGKGGAVTLGTKCARGSIILFAD 188
I+V+DGS DKT++V + + +I +R L LL+N+GKGGAV +G +RG IL D
Sbjct: 111 IIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVD 170
Query: 189 ADGATKFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHL-EALANVQRSFFRN 247
ADGAT D +KLED + ++ G++ GSR HL ++ +R ++RN
Sbjct: 171 ADGATDIDDFDKLEDIMLKIEQNGL-----------GIVFGSRNHLVDSDVVAKRKWYRN 219
Query: 248 ILMKGFHFIVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHI 307
ILM GFHFIV ++DTQCGFKLFTR++A +F S+H++RWAFD+E++ IA+ L++
Sbjct: 220 ILMYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNL 279
Query: 308 PMAEVSVNWTEIEGSKIVPVFSWIQMGWDVLNIWLHYTLGLWKIK 352
P+AEV VNWTE+EGSK+ + + IQM D+L + Y LG+WK+K
Sbjct: 280 PIAEVPVNWTEVEGSKLNVISASIQMARDILLVRSFYLLGIWKVK 324
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely fission
yeast, fungi, and animals, have no transmembrane region,
suggesting the existence of adapter molecules for
membrane anchoring. This family also includes bacteria
and archaea DPM1_like enzymes. However, the enzyme
structure and mechanism of function are not well
understood. The UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 185
Score = 175 bits (447), Expect = 4e-52
Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
V++PAYNE++ + +++ + L E + YEIIVV DGSTD T ++ + +
Sbjct: 1 VVIPAYNEEENIPELVERLLAVLEE------GYDYEIIVVDDGSTDGTAEIARELAARVP 54
Query: 154 EDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDY 213
VR ++L +N GKG AV G K ARG I++ DAD D+ KL +KL E G
Sbjct: 55 R--VRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLE---GGA 109
Query: 214 IEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFK 273
D V++GSR R + + F+F++ I DTQ GF+
Sbjct: 110 --D---------VVIGSRFVRGG--GAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFR 156
Query: 274 LFTRKSALQLFSSIHVQRWAFDVELLFIA 302
LF R+ L S + + F +ELL A
Sbjct: 157 LFRREVLEALLSLLESNGFEFGLELLVGA 185
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 88.3 bits (219), Expect = 2e-20
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC 152
SVI+P YNE+ L+ ET+E L + K +EIIVV DGSTD T+++ +Y +
Sbjct: 1 SVIIPTYNEEKYLE----ETLESLLNQTYK----NFEIIVVDDGSTDGTVEIAEEYAKN- 51
Query: 153 GEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGD 212
+ VR ++L +N GK A G K A G I F DAD LEKL + L++
Sbjct: 52 -DPRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEK----- 105
Query: 213 YIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGF 272
+++GSR + + R L+ + + +
Sbjct: 106 ---------NGADIVIGSRVVINGETRLYGRALRFELLLLLGKLGARSLGLKVLFLIGSN 156
Query: 273 KLFTRKSALQLF 284
L+ R+ +L
Sbjct: 157 ALYRREVLEELL 168
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 86.8 bits (216), Expect = 2e-19
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 30/235 (12%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
+I+P YNE++ + +++ L YEIIVV D S D T ++V + ++
Sbjct: 1 IIIPTYNERENIPELIERLDAALKG-------IDYEIIVVDDNSPDGTAEIVRELAKEYP 53
Query: 154 ED--IVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDG 211
IVR RG G A G K ARG +I+ DAD + + +L + E
Sbjct: 54 RVRLIVRP----GKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLE-GGA 108
Query: 212 DYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCG 271
D +++GSR ++E R ++ +G + + R + D G
Sbjct: 109 D-------------LVIGSR-YVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSG 154
Query: 272 FKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTE-IEG-SKI 324
F+ + R+ +L S+ + + F +ELL A L + EV + + + G SK+
Sbjct: 155 FRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKL 209
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 84.5 bits (210), Expect = 5e-19
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
++VP YNE++ L + + L + YEII V DGSTD+T++++ + +
Sbjct: 1 IVVPVYNEEENLPELYERLKAVLES-----LGYDYEIIFVDDGSTDRTLEILRELAARDP 55
Query: 154 EDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDY 213
V+ ++L +N G+ A+ G ARG ++ DAD + ++ K +E D
Sbjct: 56 R--VKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGYD--- 110
Query: 214 IEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIV-WFTGVRTIRDTQCGF 272
V+ G R N + S+ + + K F+ ++ +GV + F
Sbjct: 111 ------------VVYGVR------KNRKESWLKRLTSKLFYRLINKLSGVDIPDNG-GDF 151
Query: 273 KLFTRK 278
+L RK
Sbjct: 152 RLMDRK 157
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 80.2 bits (198), Expect = 9e-18
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
VI+PAYNE +P L+ +E L +E+IVV DGSTD T++++ +Y +K
Sbjct: 1 VIIPAYNE----EPYLERCLESL----LAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-- 50
Query: 154 EDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDY 213
+ V + +N+G A G K ARG ILF DAD L D L+ L
Sbjct: 51 DPRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLL-------LPDWLERLVAELL 103
Query: 214 IEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIR 266
+ + +A G G ++ R LE + + F + G R
Sbjct: 104 ADPEADAVGGPGNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAFR 156
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 81.3 bits (199), Expect = 7e-17
Identities = 55/282 (19%), Positives = 99/282 (35%), Gaps = 24/282 (8%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
+SV++P YNE++ L L+ + + +EIIVV DGSTD T ++ +Y K
Sbjct: 5 VSVVIPTYNEEEYLPEALESLLNQTYK--------DFEIIVVDDGSTDGTTEIAIEYGAK 56
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDG 211
I + +N G G A G + ARG I+F DAD +L + DG
Sbjct: 57 DVRVIRLINE--RNGGLGAARNAGLEYARGDYIVFLDADDQHP----PELIPLVAAGGDG 110
Query: 212 DYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCG 271
DYI ++ I R L L + + +L+ + +RD G
Sbjct: 111 DYIARLDDR----DDIWLPRKLLSKLVKLLGNRLLGVLIPDGFGDLRL----LVRDAVDG 162
Query: 272 FKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVNWTEIE--GSKIVPVFS 329
+ F + L + L ++ + ++ + + +
Sbjct: 163 LRAFLEGRSRFLRLLLRKLVLIRREVLEYLLLYRLLGASKRVLLGKLLRLGLLLLDSKLK 222
Query: 330 WIQMGWDVLNIWLHYTLGLWKIKAMENKYRAVYVPSQTSPVY 371
+ + +L L + + + R +
Sbjct: 223 AVPLDLLLLLGLFIALLSILLLLLLLLLRRLLGANLSEKGKP 264
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 73.0 bits (180), Expect = 5e-15
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 94 VIVPAYNEQDRLKPMLDETIE-FLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC 152
+IVPAYNE+ +++ TIE L K E+IVV DGSTD T++++ +
Sbjct: 1 IIVPAYNEEA----VIERTIESLLALDYPK-----LEVIVVDDGSTDDTLEILEELAALY 51
Query: 153 GEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
++ ++ +N GK GA+ G + A+G I++ DAD
Sbjct: 52 IRRVLV-VRDKENGGKAGALNAGLRHAKGDIVVVLDAD 88
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 73.4 bits (181), Expect = 1e-14
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 18/123 (14%)
Query: 71 LDVKTGQELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEI 130
L + P P+V ++I+PAYNE+ ++ L+ + L+ R ++ EI
Sbjct: 12 LARLRPKPPSLPDPAYLPTV--TIIIPAYNEEAVIEAKLENLLA-LDYPRDRL-----EI 63
Query: 131 IVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLL---KNRGKGGAVTLGTKCARGSIILFA 187
IVVSDGSTD T ++ +Y +K G+KLL + RGK A+ A G I++F
Sbjct: 64 IVVSDGSTDGTAEIAREYADK-------GVKLLRFPERRGKAAALNRALALATGEIVVFT 116
Query: 188 DAD 190
DA+
Sbjct: 117 DAN 119
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 71.5 bits (176), Expect = 7e-14
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 93 SVIVPAYNEQDRLKPMLDETIE-FLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
S+I+P NE+ ++ E +E LN+ P EIIVV GSTD T ++V +Y K
Sbjct: 3 SIIIPVRNEEKYIE----ELLESLLNQSY---PKDLIEIIVVDGGSTDGTREIVQEYAAK 55
Query: 152 CGEDIVRGLKLLKNRGK--GGAVTLGTKCARGSIILFADADG 191
++L+ N + + +G + +RG II+ DA
Sbjct: 56 DPR-----IRLIDNPKRIQSAGLNIGIRNSRGDIIIRVDAHA 92
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 71.5 bits (176), Expect = 3e-13
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 82 PSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKT 141
L + P V S++VP YNE + + +ETI L + P YE+I ++DGS+D T
Sbjct: 48 AQLKEYPGV--SILVPCYNEGENV----EETISHLL--ALRYP--NYEVIAINDGSSDNT 97
Query: 142 MQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
+++ + + +R + L +N+GK A+ G AR ++ D D
Sbjct: 98 GEILDRLAAQ--IPRLRVIHLAENQGKANALNTGAAAARSEYLVCIDGD 144
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 69.2 bits (170), Expect = 2e-12
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 67 ERVFLDVKTGQELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTF 126
ER + +T P LD+ P V S++VP YNE + +ETI L R P
Sbjct: 28 ERKWPLPRTPP----PPLDEYPGV--SILVPCYNEGANV----EETISHLLALR--YP-- 73
Query: 127 KYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILF 186
+EII ++DGS D T +++ + + + +R + L +N+GK A+ G A+ ++
Sbjct: 74 NFEIIAINDGSKDNTAEILDRLAAQ--DPRLRVIHLAENQGKANALNTGLLAAKYEYLVC 131
Query: 187 ADAD 190
D D
Sbjct: 132 IDGD 135
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 61.4 bits (150), Expect = 1e-10
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
LS+I+P NE L +L + + E+IVV GSTD T+++
Sbjct: 1 LSIIIPVLNEAATLPELLADLQALPGD---------AEVIVVDGGSTDGTVEIARSL--- 48
Query: 152 CGEDIVRGLKLLKN-RGKGGAVTLGTKCARGSIILFADAD 190
G K++ + +G+ + G A+G I+LF AD
Sbjct: 49 -------GAKVIHSPKGRARQMNAGAALAKGDILLFLHAD 81
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 59.2 bits (144), Expect = 7e-10
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
V++ A NE + L +L ++ L+ P K+E+I+V D STD T+Q++ K
Sbjct: 1 VVIAARNEAENLPRLLQ-SLSALD-----YPKEKFEVILVDDHSTDGTVQILEFAAAK-- 52
Query: 154 EDIVRGLKLLKNR-----GKGGAVTLGTKCARGSIILFADAD 190
+ LK+L N GK A+T K A+G I+ DAD
Sbjct: 53 -PNFQ-LKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDAD 92
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 60.7 bits (147), Expect = 1e-09
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 15/103 (14%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
+SVI+PAYNE+ E +E E +YE+IVV DGSTD+T +++ E+
Sbjct: 56 VSVIIPAYNEEP-------EVLEETLESLLSQDYPRYEVIVVDDGSTDETYEIL----EE 104
Query: 152 CGEDIVRGLKLL----KNRGKGGAVTLGTKCARGSIILFADAD 190
G + +++ KN GK GA+ G K A+G +++ DAD
Sbjct: 105 LGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDAD 147
>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase;
Provisional.
Length = 325
Score = 57.1 bits (138), Expect = 7e-09
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 27/191 (14%)
Query: 87 EPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVH 146
P +SV++P YNEQ+ L ++ T K +YEI+++ DGS+D + +++
Sbjct: 3 HPIKKVSVVIPVYNEQESLPELIRRTTAACESLGK-----EYEILLIDDGSSDNSAEMLV 57
Query: 147 QYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLK 206
+ + IV L L +N G+ A+ G G +I+ DAD ++ +L K
Sbjct: 58 EAAQAPDSHIVAIL-LNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKAD 116
Query: 207 ELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIR 266
E D +VG+ N Q S+FR K + ++ T + +
Sbjct: 117 EGYD----------------VVGTVR-----QNRQDSWFRKTASKMINRLIQRTTGKAMG 155
Query: 267 DTQCGFKLFTR 277
D C + + R
Sbjct: 156 DYGCMLRAYRR 166
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 55.7 bits (135), Expect = 8e-09
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
LS+I+P NE + L + L RR EIIVV GSTD T+ +
Sbjct: 1 LSIIIPTLNEAENLPR----LLASL--RRLNPLPL--EIIVVDGGSTDGTVAIARSA--- 49
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
G ++ +G+ + G ARG +LF AD
Sbjct: 50 -GVVVISS-----PKGRARQMNAGAAAARGDWLLFLHAD 82
>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase.
Length = 243
Score = 55.9 bits (135), Expect = 1e-08
Identities = 40/103 (38%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFK-YEIIVVSDGSTDKTMQVVHQYTEK 151
S+IVP YNE+ + I +L K + K +EIIVV DGS D T VV Q +
Sbjct: 12 SIIVPTYNERLNIA-----LIVYL--IFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKV 64
Query: 152 CGEDIV----RGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
GED + R KL G G A G K A G ++ DAD
Sbjct: 65 YGEDRILLRPRPGKL----GLGTAYIHGLKHASGDFVVIMDAD 103
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 54.7 bits (132), Expect = 5e-08
Identities = 51/204 (25%), Positives = 69/204 (33%), Gaps = 46/204 (22%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
LS+I+P YN + + E++ EII+V+DGSTD ++++ Y E
Sbjct: 8 LSIIIPLYNAGKDFRAFM-ESLIAQTWTA-------LEIIIVNDGSTDNSVEIAKHYAEN 59
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKL-----EDKLK 206
VR L N G A G A G + F DAD E L ED L
Sbjct: 60 YPH--VRLLH-QANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLD 116
Query: 207 ELT-DGDYIEDKNNAA---------GCNGVIVGSRAHLEALA----------NVQRSFFR 246
+ D+ GV+ G AL+ V R F
Sbjct: 117 VAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMALSSRRWTHVVWLGVYRRDF- 175
Query: 247 NILMKGFHF--------IVWFTGV 262
I+ F I W T V
Sbjct: 176 -IVKNNIKFEPGLHHQDIPWTTEV 198
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 50.5 bits (121), Expect = 1e-06
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 82 PSLDDE-PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDK 140
P+L PSV +V+VP N L +L P + E+IVV DGS D
Sbjct: 67 PALLPSPPSV--TVVVPVRNRPAGLARLLAAL------LALDYPRDRLEVIVVDDGSEDP 118
Query: 141 TMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
+ VR ++ + +G A G + AR + F D+D
Sbjct: 119 V-PTRAARGARLP---VRVIRHPRRQGPAAARNAGARAARTEFVAFTDSD 164
>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
Length = 444
Score = 48.1 bits (114), Expect = 9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 74 KTGQELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEF-LNERRKKIPTFKYEIIV 132
G ++ P L P V S++VP +NE + ETI L + I E+I
Sbjct: 61 PWGDDVPAPELKGHPLV--SILVPCFNEGLNAR----ETIHAALAQTYTNI-----EVIA 109
Query: 133 VSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
++DGS+D T QV+ + + +R + L N+GK A+ +G AR ++ D D
Sbjct: 110 INDGSSDDTAQVLDALLAE--DPRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGD 165
>gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase;
Provisional.
Length = 306
Score = 46.1 bits (110), Expect = 3e-05
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 38/114 (33%)
Query: 93 SVIVPAYNEQ-------DRLKPMLDET-IEFLNERRKKIPTFKYEIIVVSDGSTDKTMQ- 143
SV++PA NE+ D ++P+L E ++ E+IV+ GSTD T +
Sbjct: 34 SVVLPALNEEETVGKVVDSIRPLLMEPLVD--------------ELIVIDSGSTDATAER 79
Query: 144 -------VVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
VV + E+I+ L GKG A+ G I++F DAD
Sbjct: 80 AAAAGARVVSR------EEILPELPPR--PGKGEALWRSLAATTGDIVVFVDAD 125
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 42.7 bits (101), Expect = 2e-04
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQY--- 148
++V+VP +NE L L + R E+IVV DGS D+T+ V +
Sbjct: 3 VAVVVPTWNEDKVLGRTLRSILAQDYPR--------LEVIVVVDGSDDETLDVARELAAA 54
Query: 149 TEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
+VR + GK A+ + + +++ DAD
Sbjct: 55 YPDVRVHVVRRPRPPGPTGKARALNEALRAIKSDLVVLLDAD 96
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 42.0 bits (99), Expect = 4e-04
Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 7/119 (5%)
Query: 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKI-PTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
SVI+P Y + + ++ R EIIVV S + + + K
Sbjct: 1 SVIIPVYL--SLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSFAKELKKIIAK 58
Query: 152 CGEDIVRGLKLLKNR-GKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELT 209
G K K+ A G + + I F D D + LE +K
Sbjct: 59 NGAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVD---CLISPDTLEKIIKHFQ 114
>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4
glucosyltransferase is required for biosynthesis of
lipooligosaccharide. UDP-glucose: lipooligosaccharide
(LOS) beta-1-4-glucosyltransferase catalyzes the
addition of the first residue, glucose, of the
lacto-N-neotetrase structure to HepI of the LOS inner
core. LOS is the major constituent of the outer leaflet
of the outer membrane of gram-positive bacteria. It
consists of a short oligosaccharide chain of variable
composition (alpha chain) attached to a branched inner
core which is lined in turn to lipid A. Beta 1,4
glucosyltransferase is required to attach the alpha
chain to the inner core.
Length = 229
Score = 40.7 bits (96), Expect = 9e-04
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTE 150
LSV++ NE+ ++ L E++++ + EIIVV GSTD+T+++ +Y
Sbjct: 1 TLSVVIITKNEERNIERCL-ESVKWAVD----------EIIVVDSGSTDRTVEIAKEYGA 49
Query: 151 KCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
K + + G G + A +L DAD
Sbjct: 50 K----VYQ----RWWDGFGAQRNFALELATNDWVLSLDAD 81
>gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family.
Members of this family are glycosyltransferases
restricted to the archaea. All but two members are from
species with the PGF-CTERM/archaeosortase A system, a
proposed maturation system for exported, glycosylated
proteins as are found often in S-layers.
Length = 293
Score = 39.6 bits (93), Expect = 0.003
Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFK----YEIIVVSDGSTDKTMQVVHQYT 149
V++P NE + ++D F+ +I+V+ STD T ++ +
Sbjct: 4 VLIPTLNEAATIGDVIDG--------------FQELGYSDILVIDGNSTDGTQEIAKEA- 48
Query: 150 EKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELT 209
G +V + +GKG AV + +L D DG AD + L + L
Sbjct: 49 ---GARVV----IQSGKGKGQAVREAFELIDAPYVLMLDGDGTYLPADADALLEPL---- 97
Query: 210 DGDYIEDKNNAAGCNGVIVGSR-AHLEALANVQRSFFRN-ILMKGFHFIVWFTGVRTIRD 267
+G ++G+R A +E A + + N ++ + F I GV +RD
Sbjct: 98 ----------LSGRADHVIGNRFADMEPGAFTRLNLVGNRLINRLFRII---HGVD-LRD 143
Query: 268 TQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLH--IPMAEVSV 314
G++ FTR+S + + F++E E + + + V +
Sbjct: 144 ILSGYRAFTRES----IRRMELTETGFEIETEIAVECVKKNLRVEVVPI 188
>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 214
Score = 39.2 bits (92), Expect = 0.003
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 EIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT---LGTKCARGSIIL 185
E+I+ DGSTD T++++ +Y +K + L++N G + A G +
Sbjct: 29 ELIISDDGSTDGTVEIIKEYIDK----DPFIIILIRNGKNLGVARNFESLLQAADGDYVF 84
Query: 186 FADAD 190
F D D
Sbjct: 85 FCDQD 89
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 38.4 bits (90), Expect = 0.006
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
++VI+P Y+E D E L ++ P EIIVV+DG + + ++
Sbjct: 2 VTVIIPVYDED------PDVFRECLRSILRQKP---LEIIVVTDGDDEP---YLSILSQT 49
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
+ + + + GK A+ G + I++ D+D
Sbjct: 50 VKYGGIF-VITVPHPGKRRALAEGIRHVTTDIVVLLDSD 87
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 38.3 bits (90), Expect = 0.007
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKY---EIIVVSDGSTDKTMQVVHQYT 149
SVI+ +NE L T+ + R T EII+V D S ++++ +
Sbjct: 1 SVIIIFHNEA---LSTLLRTVHSVINR-----TPPELLKEIILVDDFSDKPELKLLLEEY 52
Query: 150 EKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADA 189
K V+ L+L K G A G + A G +++F D+
Sbjct: 53 YKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDS 92
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 37.2 bits (87), Expect = 0.009
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
+I+ YN + LK LD L + +E+IVV + STD +++++ +
Sbjct: 1 IIIVNYNSLEYLKACLDS---LLAQTYPD-----FEVIVVDNASTDGSVELLREL----- 47
Query: 154 EDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDGDY 213
VR ++ +N G G G + A+G +L + D L EL D
Sbjct: 48 FPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLN-------PDTVVEPGALLELL--DA 98
Query: 214 IEDKNNAAGCNGVIVGSRA 232
E + IVG +
Sbjct: 99 AEQDPDVG-----IVGPKV 112
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 36.7 bits (85), Expect = 0.023
Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 31/200 (15%)
Query: 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTE 150
+S+I+ YN ++ +E L + I+VV +GSTD +++ +
Sbjct: 4 KISIIIVTYNR-------GEDLVECLASLAAQTYPDDV-IVVVDNGSTDGSLEALKAR-- 53
Query: 151 KCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFA----DLEKLEDKLK 206
VR ++ +N G G G I +A A G D D L+
Sbjct: 54 --FFPNVRLIENGENLGFAGGFNRG--------IKYALAKGDDYVLLLNPDTVVEPDLLE 103
Query: 207 ELTDGDYIEDKNNAAGCNGVIVGS--RAHLEALANVQRSFFRNILMKGFHFIVWFTGVRT 264
EL E+ A +I +++ + +
Sbjct: 104 EL--LKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESDGLTGGWRASPLLEIAPDLSSY 160
Query: 265 --IRDTQCGFKLFTRKSALQ 282
+ + G L R+ A +
Sbjct: 161 LEVVASLSGACLLIRREAFE 180
>gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen
biosynthesis. Escherichia coli WfgS and Shigella
dysenteriae WfeV are glycosyltransferase 2 family
enzymes involved in O-antigen biosynthesis. GT-2 enzymes
have GT-A type structural fold, which has two tightly
associated beta/alpha/beta domains that tend to form a
continuous central sheet of at least eight beta-strands.
These are enzymes that catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds.
Glycosyltransferases have been classified into more than
90 distinct sequence based families.
Length = 202
Score = 35.2 bits (82), Expect = 0.054
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 93 SVIVPAYNEQDRLKPMLDETIE-FLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
S+I P YN+ + L+ ETI+ L++ I E IV+ GSTD T+ ++ +Y +K
Sbjct: 1 SIITPTYNQAETLE----ETIDSVLSQTYPNI-----EYIVIDGGSTDGTVDIIKKYEDK 51
Query: 152 CGEDIVRGLKLLKNRGKG--GAVTLGTKCARGSIILF--AD---ADGATKFADLEKLEDK 204
+ KG A+ G A G II F +D GA L +
Sbjct: 52 I-------TYWISEPDKGIYDAMNKGIALATGDIIGFLNSDDTLLPGA-----LLAVVAA 99
Query: 205 LKELTDGDYI 214
E + D +
Sbjct: 100 FAEHPEVDVV 109
>gnl|CDD|213815 TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This
family of genes include a glycosyl transferase, group 2
domain (pfam00535) which are responsible, generally for
the transfer of nucleotide-diphosphate sugars to
substrates such as polysaccharides and lipids. The genes
of this family are often found in the same genetic locus
with squalene-hopene cyclase genes, and are never
associated with genes for the metabolism of phytoene.
Indeed, the members of this family appear to never be
found in a genome lacking squalene-hopene cyclase (SHC),
although not all genomes encoding SHC have this glycosyl
transferase. In the organism Zymomonas mobilis the
linkage of this gene to hopanoid biosynthesis has been
noted and the gene named HpnB. Hopanoids are known to
feature polar glycosyl head groups in many organisms.
Length = 384
Score = 35.8 bits (83), Expect = 0.061
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 82 PSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKT 141
PS + P+V +VPA NE D ++ E + L + P K +I+V D STD T
Sbjct: 34 PSPEAWPAV--VAVVPARNEAD----VIGECVTSL--LEQDYPG-KLHVILVDDHSTDGT 84
Query: 142 ----MQVVHQYTEKCGEDIVRGLKLLKN-RGKGGAVTLGTKCARGSI-----ILFADAD 190
Y +V G L GK AV+ G AR +L DAD
Sbjct: 85 ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDAD 143
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein family
are probable glycosyltransferases of family 2, whose
genes are near those for the exosortase homolog XrtG
(TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene neighborhood
include a 6-pyruvoyl tetrahydropterin synthase homolog
(TIGR03112) and an uncharacterized intergral membrane
protein (TIGR03766).
Length = 439
Score = 35.5 bits (82), Expect = 0.067
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
+++I+P YN +D L ++ + P +II+ ++ STD + QV + +
Sbjct: 51 ITIIIPVYNSEDTLFNCIESIYN------QTYPIELIDIILANNQSTDDSFQVFCRAQNE 104
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADG 191
+R + ++GK A+ + G I+ D+DG
Sbjct: 105 FPGLSLRYMN--SDQGKAKALNAAIYNSIGKYIIHIDSDG 142
>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
polymerase functions as a GalNAc transferase.
Chondroitin polymerase is a two domain, bi-functional
protein. The N-terminal domain functions as a GalNAc
transferase. The bacterial chondroitin polymerase
catalyzes elongation of the chondroitin chain by
alternatively transferring the GlcUA and GalNAc moiety
from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
of the chondroitin chain. The enzyme consists of
N-terminal and C-terminal domains in which the two
active sites catalyze the addition of GalNAc and GlcUA,
respectively. Chondroitin chains range from 40 to over
100 repeating units of the disaccharide. Sulfated
chondroitins are involved in the regulation of various
biological functions such as central nervous system
development, wound repair, infection, growth factor
signaling, and morphogenesis, in addition to its
conventional structural roles. In Caenorhabditis
elegans, chondroitin is an essential factor for the worm
to undergo cytokinesis and cell division. Chondroitin is
synthesized as proteoglycans, sulfated and secreted to
the cell surface or extracellular matrix.
Length = 182
Score = 33.7 bits (78), Expect = 0.13
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC 152
+I+ YN + L+ +L LN+ +E+I+ DGST++T +++ ++ +
Sbjct: 1 LIITTYNRPEALELVLKS---VLNQSILP-----FEVIIADDGSTEETKELIEEFKSQF 51
>gnl|CDD|219174 pfam06780, Erp_C, Erp protein C-terminus. This family represents
the C-terminus of bacterial Erp proteins that seem to be
specific to Borrelia burgdorferi (a causative agent of
Lyme disease). Borrelia Erp proteins are particularly
heterogeneous, which might enable them to interact with
a wide variety of host components.
Length = 141
Score = 32.8 bits (75), Expect = 0.20
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 197 DLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGS 230
DLEKL+ KL+E+ +Y+EDK+N G + S
Sbjct: 110 DLEKLKSKLEEVK--EYLEDKDNFEEIKGYVKDS 141
>gnl|CDD|211965 TIGR04242, nodulat_NodC, chitooligosaccharide synthase NodC.
Members of this family are NodC, an
N-acetylglucosaminyltransferase involved in the
production of nodulation factors through which rhizobia
establish symbioses with leguminous plants.
Length = 395
Score = 33.9 bits (78), Expect = 0.23
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 21/117 (17%)
Query: 80 EFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKY----EIIVVSD 135
+ D PSV+ VIVP +NE R L+E I Y + VV D
Sbjct: 40 DALPSDPLPSVD--VIVPCFNEDPRT----------LSECLASIAAQDYAGKLRVYVVDD 87
Query: 136 GSTDKT--MQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
GST++ + V Y + + L KN GK A + + G ++L D+D
Sbjct: 88 GSTNRDALVPVHDAYA---SDPRFNFILLPKNVGKRKAQIAAIRRSSGDLVLNVDSD 141
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 33.5 bits (76), Expect = 0.29
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 31 IHCYIALFLVCGILSYAYRSFKTKNPFPDIDFLSKGERVFLDVKTGQELEFPSLD----- 85
I C I CG S YR + N FPD++ L+ Q +E P+L
Sbjct: 125 IPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLN------------QTVELPALPLLEVR 172
Query: 86 DEPSVNL 92
D PS L
Sbjct: 173 DLPSFML 179
>gnl|CDD|133059 cd06437, CESA_CaSu_A2, Cellulose synthase catalytic subunit A2
(CESA2) is a catalytic subunit or a catalytic subunit
substitute of the cellulose synthase complex. Cellulose
synthase (CESA) catalyzes the polymerization reaction of
cellulose using UDP-glucose as the substrate. Cellulose
is an aggregate of unbranched polymers of
beta-1,4-linked glucose residues, which is an abundant
polysaccharide produced by plants and in varying degrees
by several other organisms including algae, bacteria,
fungi, and even some animals. Genomes from higher plants
harbor multiple CESA genes. There are ten in
Arabidopsis. At least three different CESA proteins are
required to form a functional complex. In Arabidopsis,
CESA1, 3 and 6 and CESA4, 7 and 8, are required for
cellulose biosynthesis during primary and secondary cell
wall formation. CESA2 is very closely related to CESA6
and is viewed as a prime substitute for CESA6. They
functionally compensate each other. The cesa2 and cesa6
double mutant plants were significantly smaller, while
the single mutant plants were almost normal.
Length = 232
Score = 31.1 bits (71), Expect = 1.1
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 88 PSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQ 147
P V +V +P +NE+ +++ IE P + EI V+ D STD+T+++ +
Sbjct: 1 PMV--TVQLPVFNEKY----VVERLIE--AACALDYPKDRLEIQVLDD-STDETVRLARE 51
Query: 148 YTEKCGEDIVRGLKLL----KNRG--KGGAVTLGTKCARGSIILFADAD 190
E+ +G+ + +R K GA+ G K A+G + DAD
Sbjct: 52 IVEEYAA---QGVNIKHVRRADRTGYKAGALAEGMKVAKGEYVAIFDAD 97
>gnl|CDD|190261 pfam02257, RFX_DNA_binding, RFX DNA-binding domain. RFX is a
regulatory factor which binds to the X box of MHC class
II genes and is essential for their expression. The
DNA-binding domain of RFX is the central domain of the
protein and binds ssDNA as either a monomer or
homodimer.
Length = 73
Score = 28.3 bits (64), Expect = 1.8
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 427 HCSSVVCRPMNAVTFGRTVSESSPGIGTIHKFGVSGKS 464
HC+ + +P++A +FG+ + PG+ + G G+S
Sbjct: 36 HCAELGLKPLSAASFGKLIRSVFPGL-KTRRLGTRGQS 72
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase Family
GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 30.2 bits (69), Expect = 1.9
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 92 LSVIVPAYN-EQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTD-KTMQVVHQYT 149
+S+++P YN + L+ ++ +E+ + D STD + +V+ +Y
Sbjct: 3 ISIVMPVYNTPEKYLREAIESVRAQTYPN--------WELCIADDASTDPEVKRVLKKYA 54
Query: 150 EKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGA-TKFADLEKLEDKLKEL 208
+ + ++ + +N G A + A G + D D A E + L E
Sbjct: 55 AQ--DPRIKVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEVV-KALNEH 111
Query: 209 TDGDYI---EDKNNAAG 222
D D I EDK + G
Sbjct: 112 PDADLIYSDEDKIDEGG 128
>gnl|CDD|133063 cd06913, beta3GnTL1_like, Beta 1, 3-N-acetylglucosaminyltransferase
is essential for the formation of
poly-N-acetyllactosamine . This family includes human
Beta3GnTL1 and related eukaryotic proteins. Human
Beta3GnTL1 is a putative
beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is
expressed at various levels in most of tissues examined.
Beta 1, 3-N-acetylglucosaminyltransferase has been found
to be essential for the formation of
poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a
unique carbohydrate composed of N-acetyllactosamine
repeats. It is often an important part of
cell-type-specific oligosaccharide structures and some
functional oligosaccharides. It has been shown that the
structure and biosynthesis of poly-N-acetyllactosamine
display a dramatic change during development and
oncogenesis. Several members of beta-1,
3-N-acetylglucosaminyltransferase have been identified.
Length = 219
Score = 30.1 bits (68), Expect = 2.1
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC- 152
+I+P +N + LDE +E + ++ + E+ V +D STDK+ +++ ++ +K
Sbjct: 1 IILPVHNGE----QWLDECLESVLQQDFEGTL---ELSVFNDASTDKSAEIIEKWRKKLE 53
Query: 153 ---GEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
+V +G G A + G + F D+D
Sbjct: 54 DSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSD 94
>gnl|CDD|216924 pfam02191, OLF, Olfactomedin-like domain.
Length = 250
Score = 29.9 bits (68), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 14/44 (31%)
Query: 38 FLVCGILSYAYRSFKTKNPFPDIDFLSKGERVFL--DVKTGQEL 79
F+VCG+L Y RS+ ++ R+F D TG E
Sbjct: 177 FMVCGVL-YVTRSYSLRD-----------TRIFYAYDTSTGTEE 208
>gnl|CDD|133060 cd06438, EpsO_like, EpsO protein participates in the methanolan
synthesis. The Methylobacillus sp EpsO protein is
predicted to participate in the methanolan synthesis.
Methanolan is an exopolysaccharide (EPS), composed of
glucose, mannose and galactose. A 21 genes cluster was
predicted to participate in the methanolan synthesis.
Gene disruption analysis revealed that EpsO is one of
the glycosyltransferase enzymes involved in the
synthesis of repeating sugar units onto the lipid
carrier.
Length = 183
Score = 29.5 bits (67), Expect = 3.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVV 145
+++PA+NE+ + + + + + P Y I VV+D TD T QV
Sbjct: 1 ILIPAHNEEAVIGNTVR------SLKAQDYPRELYRIFVVADNCTDDTAQVA 46
>gnl|CDD|177282 PHA00447, PHA00447, lysozyme.
Length = 142
Score = 29.0 bits (65), Expect = 4.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 544 NHHSVPVCVSGGIDAEG 560
N +SV VC+ GGID +G
Sbjct: 72 NSNSVGVCLVGGIDDKG 88
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 29.6 bits (67), Expect = 4.8
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 179 ARGSIILFADADGATKFADLEKLEDKLKELTDGD---YIEDKNNAAGCNGVIVGSRAHLE 235
A G ++ + D + LE LKE T+G+ +N G V + LE
Sbjct: 110 AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTG----TVATLEELE 165
Query: 236 ALANVQRSFFRNIL 249
L ++ + NIL
Sbjct: 166 KLLDLAKE--HNIL 177
>gnl|CDD|211918 TIGR04195, S_glycosyl_SunS, peptide S-glycosyltransferase, SunS
family. Members of this family include SunS, the
S-glycosyltransferase that transfers a sugar (substrate
is variable in reconstitution assays) onto the precursor
of the glycopeptide sublancin, which once was thought to
be a lantibiotic.
Length = 422
Score = 29.6 bits (66), Expect = 4.9
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 72 DVKTGQELEFP-SLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEI 130
D EL D PS+ +I YNE+ +K LD + +E I
Sbjct: 40 DSMNINELVAGYEKADTPSITCGIIT--YNEEKCIKKCLDSLGDDFDE-----------I 86
Query: 131 IVVSDGSTDKTMQVV 145
IV+ STD T ++
Sbjct: 87 IVLDSHSTDDTTDII 101
>gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional.
Length = 248
Score = 29.4 bits (66), Expect = 5.1
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 124 PTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSI 183
P +E IVV GS D T + + V + G A+ G A+G
Sbjct: 30 PGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE----PDNGIYDAMNKGIAMAQGRF 85
Query: 184 ILFADA-----DGATKFADLEKLEDKLKELTDGDYIED 216
LF ++ A F K++ K + GD + D
Sbjct: 86 ALFLNSGDIFHQDAANFVRQLKMQ-KDNAMIIGDALLD 122
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 29.7 bits (67), Expect = 6.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 479 YYYYFWYPQIIICPEMSKTGLLNKNLIIFWNLKCVFFCGYKLLSQSII 526
+++ WY + SKTG +++ ++FW L +FF + L Q +I
Sbjct: 1191 IFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVI 1238
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 29.3 bits (67), Expect = 6.8
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 196 ADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRS 243
+++L + +KEL G + ++ GV + + HLEAL
Sbjct: 356 EGIDELREAIKELAFGGFGGNQE------GVFLTNARHLEALERALEH 397
>gnl|CDD|221463 pfam12211, LMWSLP_N, Low molecular weight S layer protein N
terminal. This family of proteins is found in bacteria.
Proteins in this family are typically between 328 and
381 amino acids in length. There is a conserved LGDG
sequence motif. Clostridial species have a layer of
surface proteins surrounding their membrane. This layer
is comprised of a high molecular weight protein and a
low molecular weight protein. This domain is the N
terminal domain of the low molecular weight protein. It
is a structural domain.
Length = 253
Score = 28.5 bits (64), Expect = 7.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 190 DGATKFADLEKL----EDKLKELTDGDYIE 215
D A K A +KL ++KL L DGDY++
Sbjct: 49 DAADKSAAADKLYNLVDNKLDNLGDGDYVD 78
>gnl|CDD|206175 pfam14005, YpjP, YpjP-like protein. The YpjP-like protein family
includes the B. subtilis YpjP protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are
approximately 200 amino acids in length.
Length = 137
Score = 27.6 bits (62), Expect = 9.5
Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 94 VIVPAYNE--QDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDG-STDKTMQVVHQYTE 150
VI + E +++ + + + ++P + + +S+ + + ++ H Y
Sbjct: 32 VIEDEFREEILPKIEEAIADLLA-------ELPEDDLQDLEISEAPAGGQGEKIFHIYNR 84
Query: 151 KCGEDIVRGLKLLKNRGKGGAVT 173
K GED++R + + G
Sbjct: 85 KTGEDLLRFHVRRDHPPQDGYWF 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,936,067
Number of extensions: 2837928
Number of successful extensions: 2541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2482
Number of HSP's successfully gapped: 55
Length of query: 569
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 467
Effective length of database: 6,413,494
Effective search space: 2995101698
Effective search space used: 2995101698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.6 bits)