RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7267
(569 letters)
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 103 bits (259), Expect = 1e-24
Identities = 41/227 (18%), Positives = 74/227 (32%), Gaps = 22/227 (9%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
+SV++PA +E+D + ++D + E+IV+ GSTD T +
Sbjct: 50 ISVVLPALDEEDTIGSVIDSI-------SPLVDGLVDELIVLDSGSTDDTEIRAVAAGAR 102
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFA-DLEKLEDKLKELTD 210
++ GKG A+ +RG I++F D+D + L L LT
Sbjct: 103 VVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPL--LTG 160
Query: 211 GDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQC 270
K+ V L + I
Sbjct: 161 DGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPL-----LAALRPELGCILQPLG 215
Query: 271 GFKLFTRKSALQL-FSSIHVQRWAFDVELLF--IAEVLHIPMAEVSV 314
G TR+ + F+ + ++ LL + +A+V++
Sbjct: 216 GEYAATRELLTSVPFAP----GYGVEIGLLVDTFDRLGLDAIAQVNL 258
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 91.8 bits (227), Expect = 3e-20
Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 25/246 (10%)
Query: 80 EFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTD 139
+ E + +S ++P+ N D + ++DE +I+VV S D
Sbjct: 84 DLARRKRELGLTVSAVLPSRNVADTVGGIIDEIHALNER-----APLIDQILVVDADSED 138
Query: 140 KTMQVVHQYTEKCGEDIVRGLKLLK----NRGKGGAVTLGTKCARGSIILFADADGATKF 195
T V G ++ +L+ GKG A+ RG ++L+ DAD
Sbjct: 139 GTAGVA----ASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRD-- 192
Query: 196 ADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHF 255
+ L + + + AA G + V + + F
Sbjct: 193 FRPQLAYGVLGPVLEVPGV-RFVKAAYRRPFRKGESIEEDGGGRVTELTAKPL------F 245
Query: 256 IVWFTGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSVN 315
+++ + G + R+ + + +A + ++ A V+
Sbjct: 246 NLFYPELAGFVQPLAGEFVADRELFCSI---PFLTGYAVETGIMIDVLKKVGLGAMAQVD 302
Query: 316 WTEIEG 321
E +
Sbjct: 303 LGERQN 308
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 69.6 bits (170), Expect = 1e-12
Identities = 53/347 (15%), Positives = 97/347 (27%), Gaps = 60/347 (17%)
Query: 56 PFPDIDFLSKGERVFLDVKTGQELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIE- 114
P D++ G+R LD ++L LS+++P YN +L T+
Sbjct: 67 PESTNDYVWAGKRKELDDYPRKQLIID--------GLSIVIPTYNRAK----ILAITLAC 114
Query: 115 FLNERRKKIPTFK-YEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVT 173
N++ T YE+IV DGS + ++V ++ VR K+ G
Sbjct: 115 LCNQK-----TIYDYEVIVADDGSKENIEEIVREFESLLNIKYVR----QKDYGYQLCAV 165
Query: 174 L--GTKCARGSIILFADADGATKFADL---EKLEDKLKEL----------TDGDYIEDKN 218
G + A+ + + D D ++ ++ L K+
Sbjct: 166 RNLGLRAAKYNYVAILDCD------MAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKH 219
Query: 219 NAAGCNGVIVGSRAHLEAL------ANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGF 272
E + V+++ + ++ F T G
Sbjct: 220 TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGG 279
Query: 273 KLFTRKSALQ---LFSSIHVQRWAFDVELLF-IAE----VLHIPMAEVSVNWTEIEGSKI 324
+ K L F D E + + + E G +
Sbjct: 280 NVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE--GAMAYHQEPPGKEN 337
Query: 325 VPVFSWIQMGWDVLNIWLHYTLGLWKIKAMENKYRAVYVPSQTSPVY 371
+ + L K K + V + S P Y
Sbjct: 338 ETDRAAGKNITVQLLQQKVPYFYRKKEKIESATLKRVPLVSIYIPAY 384
Score = 61.9 bits (150), Expect = 3e-10
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 34/143 (23%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIE-FLNERRKKIPTFK-YEIIVVSDGSTDKTMQVVHQYT 149
+S+ +PAYN + +E LN+ T E+ + DGSTD T++++ ++
Sbjct: 377 VSIYIPAYNCSKYIV----RCVESALNQ------TITDLEVCICDDGSTDDTLRILQEHY 426
Query: 150 EKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADL---EKLEDKLK 206
VR KN+G G A + RG I D+D D + +E L
Sbjct: 427 AN--HPRVR-FISQKNKGIGSASNTAVRLCRGFYIGQLDSD------DFLEPDAVELCLD 477
Query: 207 EL----------TDGDYIEDKNN 219
E T I+ + N
Sbjct: 478 EFRKDLSLACVYTTNRNIDREGN 500
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 66.9 bits (163), Expect = 9e-12
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFK-YEIIVVSDGSTDKTMQVVHQYTE 150
L++IV YN ++ + L+ + + + +I+V+DGSTD++ +++ + +
Sbjct: 4 LTIIVTYYNAEEYITGCLESIKQ---------QRTQDFNLIIVNDGSTDQSKKLMDEAIK 54
Query: 151 KCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
+ +R + L +N G A + + +F DAD
Sbjct: 55 DY-DKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 64.0 bits (155), Expect = 4e-11
Identities = 32/240 (13%), Positives = 60/240 (25%), Gaps = 49/240 (20%)
Query: 93 SVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKC 152
V+ P +E + P + ++ D+T + V + +
Sbjct: 3 LVVFPFKHEHPE-------VLLHNVRVAAAHP--RVHEVLCIGYERDQTYEAVERAAPEI 53
Query: 153 GEDIVRGLKLLK-------NRGKGGAVTLG----TKCARGSIILFADADGATKFAD-LEK 200
+ + GKG + + + I F DAD + D + K
Sbjct: 54 SRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITK 113
Query: 201 LEDKLK---ELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIV 257
E+ L + +A I GF +
Sbjct: 114 AEEAADFGYGLVRHYFPRASTDAM----------------------ITWMITRTGFALLW 151
Query: 258 WFTGVRTIRDTQCGFKLFTRK---SALQLFSSIHVQRWAFDVELLFIAEVLHIPMAEVSV 314
T + I G L R+ + W D F+ + + E +
Sbjct: 152 PHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYI 211
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 62.4 bits (152), Expect = 5e-11
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 26/120 (21%)
Query: 93 SVIVPAYNEQDRLKPMLDETIE-FLNERRKKIPTFK-YEIIVVSDGSTDKTMQVVHQYTE 150
SVI+ +YN+ D + ++I L++ TF +E+ ++ D S ++T+ V+ +
Sbjct: 4 SVIMTSYNKSDYVA----KSISSILSQ------TFSDFELFIMDDNSNEETLNVIRPFLN 53
Query: 151 KC-----GEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADL---EKLE 202
DI + + + + A G I +A D ++ ++L
Sbjct: 54 DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDD------NIYMPDRLL 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 95/599 (15%), Positives = 163/599 (27%), Gaps = 246/599 (41%)
Query: 45 SYAYRSFKTKNPFPDIDFLSKGE-RVFLDVKT-----GQEL--EF------PS----LDD 86
+Y+ R LS G L V T +L +F P+ DD
Sbjct: 3 AYSTRPLT----------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 87 EPSVNLSVI------VPAYNEQDR-------LKPMLDE-TIEFLNERRKKIPTFKYEIIV 132
EP+ ++ V + E + L L E +L I +++
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDIHALAAKLLQ 110
Query: 133 VSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNR--GKGGAVTLGTKCARGSIILFA--- 187
+D + KT +++ Y ++ R K L G+ L A
Sbjct: 111 ENDTTLVKTKELIKNYITAR---------IMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 188 --DADGATKFADLEKLEDKLKEL-----TDGDYIEDKNNAAGCNGVIVGSRAHLEALANV 240
G T +D +EL T + D +I S L L
Sbjct: 162 GQ---GNT--------DDYFEELRDLYQTYHVLVGD---------LIKFSAETLSELIRT 201
Query: 241 QRSFFRNILMKGFHFIVWFTGVRTIRD----------------TQCG-FKLFTRKSAL-- 281
+ + +G + + W D Q + + +
Sbjct: 202 TLDAEK-VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 282 -QLFSSI-----HVQR------------WA-FD------VELLFI--------------- 301
+L S + H Q W F + +LF
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 302 AEVLHI----------PMAEVS-VNWTEIEGSKI------VPVFSWIQM----GWD--V- 337
+L PM +S + +++ + +P +++ G V
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 338 ---------LNIWLHYTLGLWKIKAM--ENKYRAVYVPSQTSPVY---FLKVT------- 376
LN+ L K KA ++ R + S+ + FL V
Sbjct: 380 SGPPQSLYGLNLTLR------KAKAPSGLDQSRIPF--SERKLKFSNRFLPVASPFHSHL 431
Query: 377 -GSCNMDVHKTCAKNDCSARSK-LGVVAVKCVLLPVVRIEYFPQ--MPLRP-----GEVH 427
+ ++K KN+ S +K + + PV Y LR E
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQI--------PV----YDTFDGSDLRVLSGSISERI 479
Query: 428 CSSVVCRPMN-----------AVTFGRTVSESSPGIGTIHKFGVSGKSLLFIQLCDIGR 475
++ P+ + FG PG G SG +L + D G
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFG-------PG-------GASGLGVLTHRNKD-GT 523
Score = 46.6 bits (110), Expect = 2e-05
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 17/114 (14%)
Query: 154 EDIVRGLKLLKNRGK--GGAVTLGTKCARGSIILFADADG--ATKFAD--LEKLEDKLKE 207
E ++++ RG AV + R + + A G A F+ L+ + +++ +
Sbjct: 1780 ES---LVEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 208 LTDGDYIEDKN-NAAGCNGVIVGSRAHLEALANVQRSF-FRNI----LMKGFHF 255
T G +E N N V G L+ + NV + I L K
Sbjct: 1836 RT-GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 35.0 bits (80), Expect = 0.070
Identities = 45/280 (16%), Positives = 69/280 (24%), Gaps = 138/280 (49%)
Query: 32 HCYIALFLVCGILSYAYRSFKTKNPFPDIDFLSKGERVFLDVKTGQELEFP-SLDDEPSV 90
I+L N G + V +G P SL +
Sbjct: 365 QVEISLV----------------N----------GAKNL--VVSG----PPQSLY---GL 389
Query: 91 NLS---VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVV-- 145
NL+ P+ +Q R I F RK F + V+
Sbjct: 390 NLTLRKAKAPSGLDQSR--------IPF--SERK--LKFSNRFLPVA----------SPF 427
Query: 146 H-QY----TEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEK 200
H ++ +D+V+ A + I ++ DG+ DL
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFN------AKDIQ-------IPVYDTFDGS----DLRV 470
Query: 201 LEDKLKE-LTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWF 259
L + E + D I+ E + + H + F
Sbjct: 471 LSGSISERIVD---------------CIIRLPVKWETTTQFKAT----------HILD-F 504
Query: 260 ------------------TGVRTI--------RDTQCGFK 273
TGVR I D GFK
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 54.2 bits (131), Expect = 2e-08
Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 43/224 (19%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFK-YEIIVVSDGSTDKTMQVVHQYTE 150
+SVIVP YN + L + + L + T EII++ D S D ++ Y
Sbjct: 7 VSVIVPIYNVEKYLDQCVQ-AL--LAQ------TLSDIEIILIDDESPDNCPKICDDYAA 57
Query: 151 KCGED--IVRGLKLL--KNRGKGGAVTLGTKCARGSIILFADADGATKFAD------LEK 200
+ I K++ KN G G A G A G + F D+D D
Sbjct: 58 Q---YPNI----KVIHKKNAGLGMACNSGLDVATGEYVAFCDSD------DYVDSDMYMT 104
Query: 201 LEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQ-RSFFRNILMKGFHFIVWF 259
+ + ++ D + G+ G+ H + + ++ +L +
Sbjct: 105 MYNVAQK-YTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYA 163
Query: 260 TGVRTIRDTQCGFKLFTRKSALQLFSSIHVQRWAFDVELLFIAE 303
R I+ + L+ R++ L H++ F E + +E
Sbjct: 164 REERAIQVSAKV-VLY-RRN---LIEKKHLR---FVSERILPSE 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 6e-08
Identities = 55/423 (13%), Positives = 113/423 (26%), Gaps = 96/423 (22%)
Query: 42 GILSYAYR--------SFKTKNPFPDI-DFLSKGERVFLDVKTGQELEFPSLDDEPSVNL 92
G Y Y+ +F D+ D + + + + ++ L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMP---KSILSKEEIDHIIMSKD-AVSGTLRL 67
Query: 93 SVIVPAYNE---QDRLKPMLDETIEFLNER---RKKIPTFKYEIIVVSDGSTDKTMQVVH 146
+ + E Q ++ +L +FL ++ P+ + + QV
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 147 QYT---EKCGEDIVRGLKLLKNR------GKGGA--VTLGTKCARGSIILFADADGA--T 193
+Y + + + L L+ G G+ + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 194 KFADLEKLEDKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFR-----NI 248
+ E L+ L Y D N + + + + ++ R + N
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 249 LMKGFHFI---VWFTGVRTIR--DTQCGFKLFTRKS----ALQLFSSIHV----QRWAFD 295
L+ + V + + C L TR L ++ H+
Sbjct: 247 LL-----VLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 296 ----VELLFIAEVLHIPMAEVSVNWTEIEGSKIVP-VFSWI----QMGWDVLNIWLHYTL 346
LL + L ++ E P S I + G + W H
Sbjct: 300 PDEVKSLL--LKYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 347 GLWKIKAM---------ENKYRAVY-----------VPSQTSPVYFLKVTGSCNMDVHKT 386
K+ + +YR ++ +P+ + + V S M V
Sbjct: 353 --DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 387 CAK 389
K
Sbjct: 411 LHK 413
Score = 44.1 bits (103), Expect = 1e-04
Identities = 57/314 (18%), Positives = 97/314 (30%), Gaps = 95/314 (30%)
Query: 25 ILTEFEIHCYIALFL-----VCGILSYAYRSFKTKNPFPD-------IDFLSKGERVFLD 72
F + C I L V LS A + + + L K +LD
Sbjct: 258 AWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLD 312
Query: 73 VKTGQELEFPS--LDDEPSVNLSVIV------PA------YNEQDRLKPMLDETIEFLN- 117
+ Q+L P L P LS+I A + D+L +++ ++ L
Sbjct: 313 CRP-QDL--PREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 118 -ERRK------------KIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLK 164
E RK IPT +I D M VV++ + L++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYS---------LVE 418
Query: 165 NRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKL-------KELTDGDYIEDK 217
+ K +++ SI L + K + L + K D I
Sbjct: 419 KQPKESTISIP------SIYL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 218 NNAAGCNGVI---VGSRAHLEALANVQR-SFFRNILMKGFHFIVWFTGVRTIRDTQCGFK 273
+ +G HL+ + + +R + FR + + F F+ + IR
Sbjct: 469 LD-----QYFYSHIGH--HLKNIEHPERMTLFRMVFLD-FRFL-----EQKIRHD--STA 513
Query: 274 LFTRKSALQLFSSI 287
S L +
Sbjct: 514 WNASGSILNTLQQL 527
Score = 39.5 bits (91), Expect = 0.004
Identities = 39/264 (14%), Positives = 77/264 (29%), Gaps = 95/264 (35%)
Query: 233 HLEALANVQRSFFRNILMKGFHFIVWFTGVRTIRDTQCGFKL-FTRKSALQLFSSIHVQR 291
H++ + +++IL F F + + C + + S
Sbjct: 6 HMDFETGEHQYQYKDIL---SVFEDAF-----VDNFDCKDVQDMPK----SILSK----- 48
Query: 292 WAFDVELLFIAEVLHI---PMAEVSVN---WT-EIEGSKIVPVFSWIQMGWDVLNIWLHY 344
E+ HI A WT + ++V F + +VL I +Y
Sbjct: 49 ----------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF----VE-EVLRI--NY 91
Query: 345 TLGLWKIKAMENKYRAVYVPSQTSPVYFLKVTGSCNMDVHKTCAKNDCSARSKLGVVAVK 404
+ + ++ + R PS + +Y R +L
Sbjct: 92 K---FLMSPIKTEQRQ---PSMMTRMYI--------------------EQRDRLYNDNQV 125
Query: 405 CVLLPVVRIEYFPQMPLRPGEVHCSSVVCRPMNAVTFGRTVSESSPGIG-TIHKFGVSGK 463
V R++ P + LR + + E P I SGK
Sbjct: 126 FAKYNVSRLQ--PYLKLR--------------------QALLELRPAKNVLIDGVLGSGK 163
Query: 464 SLLFIQLC---DIGREFNYYYYFW 484
+ + + +C + + + + FW
Sbjct: 164 TWVALDVCLSYKVQCKMD-FKIFW 186
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 54.5 bits (130), Expect = 6e-08
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 67 ERVFLDVKTGQELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTF 126
R D++ L+ P+ S+I+P +NE L T+ + R P
Sbjct: 91 NRSLPDIRHPNCNSKRYLETLPNT--SIIIPFHNEGWS---SLLRTVHSVLNRSP--PEL 143
Query: 127 KYEIIVVSDGSTDKT-MQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIIL 185
EI++V D S + + + Y VR L+ K G LG A G +I
Sbjct: 144 VAEIVLVDDFSDREHLKKPLEDYMALF--PSVRILRTKKREGLIRTRMLGASVATGDVIT 201
Query: 186 FADADGATKFADLEKLEDKLKE 207
F D+ L L D++
Sbjct: 202 FLDSHCEANVNWLPPLLDRIAR 223
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 52.4 bits (125), Expect = 2e-07
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 14/173 (8%)
Query: 84 LDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQ 143
D+ P+ SV++ +NE L T+ + R EI++V D S ++
Sbjct: 25 PDNLPTT--SVVIVFHNEA---WSTLLRTVHSVINRSP--RHMIEEIVLVDDASERDFLK 77
Query: 144 VVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLED 203
+ K + V +++ + G A G +RG +I F D A E
Sbjct: 78 RPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLD-------AHCECTAG 130
Query: 204 KLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFI 256
L+ L + + VI A +++ F L ++ +
Sbjct: 131 WLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPV 183
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 51.3 bits (122), Expect = 5e-07
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 86 DEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVV 145
D P+ SV++ +NE + L T+ + ++ P EII+V D S D +
Sbjct: 64 DLPAT--SVVITFHNEA---RSALLRTVVSVLKKSP--PHLIKEIILVDDYSNDPEDGAL 116
Query: 146 HQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADAD 190
EK VR L+ + G + G A+ ++ F D+
Sbjct: 117 LGKIEK-----VRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSH 156
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold,
glycosyltransferase, GT55, GDP, cytoplasm, magnesium,
transferase; HET: GDP; 2.00A {Pyrococcus horikoshii}
PDB: 2zu7_A* 2zu8_A*
Length = 394
Score = 41.7 bits (97), Expect = 5e-04
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 91 NLSVIVPAYNEQDRLK-------PMLDETIEFLNERRKKIPTFKYEIIVVSD--GSTDKT 141
++VIVP NE+ L P I N +R+ +K E+ ++ T
Sbjct: 52 KMAVIVPMKNEKLHLVDGVLKAIPHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTHSK 111
Query: 142 MQVVHQ--------YTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGS---IILFADAD 190
+ ++HQ + E DI+ ++++ GKG + +G A+ + F DAD
Sbjct: 112 IIMIHQKDPGLAKAFKEVGYTDILDENGMIRS-GKGEGMLVGLLLAKAIGAEYVGFVDAD 170
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 38.5 bits (89), Expect = 0.006
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 16/143 (11%)
Query: 59 DIDFLSKGERVFLDVKTGQELE------FPSLDDEPSVNLSVIVPAYNEQDRLKPMLDET 112
+ G V+ D+ T + + + + N++V +P +N L E
Sbjct: 143 VLQPFEDGGWVWFDITTDTAVTLHSGGWYATSPAPGTANIAVGIPTFNRPADCVNALREL 202
Query: 113 IEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAV 172
+ +IV G + + N G G
Sbjct: 203 -----TADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLS-IHDQPNLGGSGGY 256
Query: 173 TLGTKCARGSI----ILFADADG 191
+ A + ILF D D
Sbjct: 257 SRVMYEALKNTDCQQILFMDDDI 279
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase; methylmercury derivative,
N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus
cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A*
2am3_A* 2am4_A* 2am5_A*
Length = 343
Score = 34.7 bits (79), Expect = 0.066
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTE 150
+ ++V A + + + ++ L R + IIV D ++T QV+ Y
Sbjct: 3 VIPILVIACD-----RSTVRRCLDKLLHYRPSA--ELFPIIVSQDCGHEETAQVIASYGS 55
Query: 151 KCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKL 205
L + + K AR + +ED L
Sbjct: 56 AVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDL 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.11
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 198 LEKLEDKLKELTDGDYIEDKNNAAGCNGVI 227
L+KL+ LK L Y +D A +
Sbjct: 22 LKKLQASLK-L----YADDSAPALAIKATM 46
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A
{Methanocaldococcus jannaschii}
Length = 311
Score = 33.7 bits (76), Expect = 0.14
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 13/171 (7%)
Query: 31 IHCYIALFLVCGILSYAYRSFKTKNPFPDIDFLSKGERVFLDVKTGQELEFPSLDDEPSV 90
I C+ L GI + K + P + + + + G + ++
Sbjct: 67 IFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEAL 126
Query: 91 NLSVIVPAYNEQDRLKPMLDETIEFLNERR------------KKIPTFKYEIIVVS-DGS 137
+ + + + L P LDE I+ ++ I + + +S D
Sbjct: 127 EPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQLYISLDAY 186
Query: 138 TDKTMQVVHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFAD 188
+ + + ++ E I+ L +LK + + T + I+ F +
Sbjct: 187 DLDSYRRICGGKKEYWESILNTLDILKEKKRTCIRTTLIRGYNDDILKFVE 237
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA
conovel mode of DNA recognition, transcription/DNA
complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Length = 76
Score = 30.2 bits (68), Expect = 0.27
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 427 HCSSVVCRPMNAVTFGRTVSESSPGIGTIHKFGVSGKS 464
H P+NA +FG+ + G+ T + G G S
Sbjct: 29 HSQEQKLEPVNAASFGKLIRSVFMGLRT-RRLGTRGNS 65
>1ygm_A Hypothetical protein BSU31320; alpha-helical bundle, integral
membrane protein; NMR {Bacillus subtilis subsp}
Length = 118
Score = 28.9 bits (64), Expect = 1.7
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 62 FLSKGER---VFLDVKTGQELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNE 118
F K R + L+ TG +E + E LS + DR+ LD I+ NE
Sbjct: 9 FFEKHHRKWDILLEKSTGV-MEAMKVTSEEKEQLSTAI------DRMNEGLDAFIQLYNE 61
Query: 119 RRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRG 159
P + + D T +++ Q + G++ +
Sbjct: 62 SEIDEPLIQLD---------DDTAELMKQARDMYGQEKLNE 93
>1sx5_A Type II restriction enzyme ecorv; endonuclease, protein-DNA
complex, hydrolase/DNA complex; 1.50A {Escherichia
coli} SCOP: c.52.1.2 PDB: 1stx_A 1eon_A* 1eo3_A*
1eo4_A* 1eoo_A* 1eop_A* 1rve_A 2b0d_A 2b0e_A 1b94_A*
1az3_A 1az0_A* 1b95_A* 1bgb_A* 1bsu_A* 1bua_A* 1rv5_A
1rva_A* 1rvb_A* 1rvc_A* ...
Length = 244
Score = 30.0 bits (67), Expect = 1.9
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 18 MGGESEPILTEFEIHCYIALFLVCGILSYAYRSFKTKNPFPDIDFLSK---GERVFLDVK 74
+G ++ + T FE+ + + Y K +N +PD +++ +D+K
Sbjct: 32 LGSDTAVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIK 91
Query: 75 T 75
T
Sbjct: 92 T 92
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel
beta-sheet, omega-like loop, hydrolase; 2.80A
{Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Length = 379
Score = 28.5 bits (64), Expect = 6.6
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 43 ILSYAYRSFKTKNPFPDIDFLSKGERVFLDVKTGQELEFPSLDDEPSVNLSVIVPAYNEQ 102
++ Y +F + D + V+ G+E ++ E + +I Q
Sbjct: 270 LMDYISSTFTLRKIVQQGDAYQDSK---APVQDGKEDTVIAVAPED---IYLIERV-GNQ 322
Query: 103 DRLKP 107
Sbjct: 323 SSQSV 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,847,384
Number of extensions: 540157
Number of successful extensions: 1286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 40
Length of query: 569
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 470
Effective length of database: 3,937,614
Effective search space: 1850678580
Effective search space used: 1850678580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.3 bits)