RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7267
(569 letters)
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 111 bits (278), Expect = 3e-27
Identities = 36/244 (14%), Positives = 66/244 (27%), Gaps = 41/244 (16%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCG 153
V+ P +E E + P +E++ + V E
Sbjct: 3 VVFPFKHEHP-------EVLLHNVRVAAAHPRV-HEVLCIGYERDQTYEAVERAAPEISR 54
Query: 154 ----------EDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFAD-LEKLE 202
++ + L+ K G A+ + + I F DAD + D + K E
Sbjct: 55 ATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAE 114
Query: 203 DKLKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWFTGV 262
+ + RA +A + R + T +
Sbjct: 115 EAADF--GYGLV-----------RHYFPRASTDA--MITWMITRTGF----ALLWPHTEL 155
Query: 263 RTIRDTQCGFKLFTRKSALQLFSSIHVQ---RWAFDVELLFIAEVLHIPMAEVSVNWTEI 319
I G L R+ A L+ V+ W D F+ + + E + +
Sbjct: 156 SWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKA 215
Query: 320 EGSK 323
Sbjct: 216 HRLY 219
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 54.3 bits (129), Expect = 1e-08
Identities = 20/165 (12%), Positives = 44/165 (26%), Gaps = 12/165 (7%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
++I+ YN D L +L+ +++IVV + +K + +
Sbjct: 5 FTLIMQTYNRTDLLLRLLNHYQAV---------PSLHKVIVVWNNVGEKGPEELWNSLGP 55
Query: 152 CGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDKLKELTDG 211
++ + K + +L D D DL ++ D
Sbjct: 56 HPIPVIFKPQ---TANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQ 112
Query: 212 DYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFI 256
+ I ++++ G F
Sbjct: 113 IIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFF 157
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 48.8 bits (115), Expect = 9e-07
Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 14/175 (8%)
Query: 85 DDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQV 144
D+ P+ SV++ +NE L T+ + R EI++V D S ++
Sbjct: 19 DNLPTT--SVVIVFHNEAWS---TLLRTVHSVINR--SPRHMIEEIVLVDDASERDFLKR 71
Query: 145 VHQYTEKCGEDIVRGLKLLKNRGKGGAVTLGTKCARGSIILFADADGATKFADLEKLEDK 204
+ K + V +++ + G A G +RG +I F DA LE L +
Sbjct: 72 PLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 131
Query: 205 LKELTDGDYIEDKNNAAGCNGVIVGSRAHLEALANVQRSFFRNILMKGFHFIVWF 259
+K + + VI A +++ F L ++ +
Sbjct: 132 IK-------HDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQR 179
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 45.1 bits (105), Expect = 1e-05
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 92 LSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
+SVI+ +YN+ D + ++I + + +E+ ++ D S ++T+ V+ +
Sbjct: 3 VSVIMTSYNKSDYVA----KSISSILSQTFS----DFELFIMDDNSNEETLNVIRPFLND 54
Query: 152 C 152
Sbjct: 55 N 55
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 343
Score = 33.7 bits (77), Expect = 0.049
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 94 VIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEK 151
++V A + + + ++ L + + IIV D ++T QV+ Y
Sbjct: 6 ILVIACD-----RSTVRRCLDKL--LHYRPSAELFPIIVSQDCGHEETAQVIASYGSA 56
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 28.6 bits (64), Expect = 0.34
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 427 HCSSVVCRPMNAVTFGRTVSESSPGIGTIHKFGVSGKS 464
H P+NA +FG+ + G+ T + G G S
Sbjct: 29 HSQEQKLEPVNAASFGKLIRSVFMGLRT-RRLGTRGNS 65
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 202
Score = 29.8 bits (67), Expect = 0.67
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 77 QELEFPSLDDEPSVNLSVIVPAYNEQDRLKPMLDETIEFLNERRKKIPTFKYEIIVVSDG 136
EL+ + L + + D P D + + + +E++V+ +G
Sbjct: 81 LELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQ-------FEVVVILEG 133
Query: 137 STDKTMQVVHQYTEKCGEDIVRG 159
+ T T ++++ G
Sbjct: 134 IVETTGMTCQARTSYTEDEVLWG 156
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 27.9 bits (61), Expect = 2.0
Identities = 12/73 (16%), Positives = 25/73 (34%)
Query: 454 TIHKFGVSGKSLLFIQLCDIGREFNYYYYFWYPQIIICPEMSKTGLLNKNLIIFWNLKCV 513
T K V ++ D+G + Y Q + KT + L ++N
Sbjct: 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82
Query: 514 FFCGYKLLSQSII 526
F ++ + + +
Sbjct: 83 FEVPFEQIQKVQV 95
>d1ewqa3 c.55.6.1 (A:121-266) DNA repair protein MutS, domain II
{Thermus aquaticus [TaxId: 271]}
Length = 146
Score = 26.6 bits (58), Expect = 4.8
Identities = 10/52 (19%), Positives = 15/52 (28%)
Query: 29 FEIHCYIALFLVCGILSYAYRSFKTKNPFPDIDFLSKGERVFLDVKTGQELE 80
+L+YA R+ F G + L T + LE
Sbjct: 90 EGEGPLALRRARGALLAYAQRTQGGALSLQPFRFYDPGAFMRLPEATLRALE 141
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 158
Score = 26.3 bits (58), Expect = 6.8
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 107 PMLDETIEFLNERRKKIPTFKYEIIVVSDGSTDKTMQVVHQYTEKCGEDIVRG 159
P+ ET E L E R ++V+ +GS + T QV+ +DI
Sbjct: 86 PLFGETPESLAEGR-------AMLLVMIEGSDETTAQVMQARHAWEHDDIRWH 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.433
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,204,472
Number of extensions: 107618
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 13
Length of query: 569
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 479
Effective length of database: 1,171,896
Effective search space: 561338184
Effective search space used: 561338184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.3 bits)